Query 032362
Match_columns 142
No_of_seqs 98 out of 119
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 21:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j20_W 30S ribosomal protein S 92.1 0.091 3.1E-06 35.6 2.6 38 82-120 15-52 (63)
2 1qxf_A GR2, 30S ribosomal prot 92.1 0.092 3.1E-06 36.0 2.6 39 82-121 7-45 (66)
3 2xzm_6 RPS27E; ribosome, trans 91.1 0.25 8.6E-06 35.0 4.1 45 82-127 32-76 (81)
4 1qxf_A GR2, 30S ribosomal prot 90.1 0.18 6E-06 34.6 2.5 39 43-83 7-45 (66)
5 3j20_W 30S ribosomal protein S 89.2 0.22 7.7E-06 33.7 2.4 37 43-81 15-51 (63)
6 2xzm_6 RPS27E; ribosome, trans 88.6 0.27 9.2E-06 34.8 2.6 39 43-83 32-70 (81)
7 3u5c_b RP61, YS20, 40S ribosom 88.0 0.22 7.6E-06 35.3 1.8 44 82-126 34-77 (82)
8 3u5c_b RP61, YS20, 40S ribosom 83.9 0.31 1.1E-05 34.5 0.9 40 43-84 34-73 (82)
9 3iz6_X 40S ribosomal protein S 83.2 0.28 9.7E-06 35.0 0.5 44 82-126 36-79 (86)
10 3iz6_X 40S ribosomal protein S 80.1 0.39 1.3E-05 34.3 0.3 38 43-82 36-73 (86)
11 2yrc_A Protein transport prote 70.7 3.3 0.00011 27.0 2.8 39 20-58 4-48 (59)
12 2ppt_A Thioredoxin-2; thiredox 68.3 1.1 3.9E-05 31.8 0.2 29 83-111 15-43 (155)
13 1pft_A TFIIB, PFTFIIBN; N-term 60.3 5.3 0.00018 24.2 2.1 27 65-91 6-33 (50)
14 1wii_A Hypothetical UPF0222 pr 59.6 10 0.00035 26.4 3.8 40 81-120 22-65 (85)
15 1pft_A TFIIB, PFTFIIBN; N-term 57.1 8.4 0.00029 23.3 2.7 31 23-53 3-34 (50)
16 2dkt_A Ring finger and CHY zin 54.3 37 0.0013 25.8 6.4 43 42-89 26-78 (143)
17 1gh9_A 8.3 kDa protein (gene M 54.0 14 0.00049 24.9 3.7 28 64-93 4-31 (71)
18 1gh9_A 8.3 kDa protein (gene M 53.0 16 0.00056 24.6 3.8 32 101-134 3-34 (71)
19 3p2a_A Thioredoxin 2, putative 51.7 3.7 0.00013 28.0 0.4 30 82-111 5-34 (148)
20 1bor_A Transcription factor PM 50.8 3.3 0.00011 25.1 0.1 43 85-134 9-51 (56)
21 2ppt_A Thioredoxin-2; thiredox 49.3 3.3 0.00011 29.3 -0.2 31 43-74 14-44 (155)
22 2yrc_A Protein transport prote 47.8 11 0.00038 24.4 2.2 21 115-135 28-48 (59)
23 1vq8_Z 50S ribosomal protein L 40.1 12 0.0004 25.9 1.5 34 97-130 22-55 (83)
24 1twf_I B12.6, DNA-directed RNA 39.2 22 0.00075 25.5 2.9 28 105-132 7-38 (122)
25 3efo_B SEC24 related gene fami 38.3 20 0.0007 32.9 3.2 36 23-58 96-135 (770)
26 3eh2_A Protein transport prote 36.8 24 0.00084 32.4 3.5 36 23-58 92-131 (766)
27 1rfh_A RAS association (ralgds 35.4 26 0.00089 21.9 2.5 25 102-130 22-46 (59)
28 1vq8_Z 50S ribosomal protein L 34.9 22 0.00074 24.5 2.2 32 61-92 24-55 (83)
29 1faq_A RAF-1; transferase, ser 33.7 27 0.00092 20.7 2.3 23 103-130 15-37 (52)
30 2k2d_A Ring finger and CHY zin 33.5 44 0.0015 22.6 3.6 36 59-94 32-67 (79)
31 4b6d_A RAC GTPase-activating p 29.6 33 0.0011 22.0 2.3 28 102-131 19-46 (61)
32 1pcx_A Protein transport prote 28.7 48 0.0016 30.6 4.0 33 25-57 112-148 (810)
33 2ct7_A Ring finger protein 31; 26.4 54 0.0018 21.7 3.0 23 28-50 28-50 (86)
34 3na7_A HP0958; flagellar bioge 26.0 26 0.00088 27.5 1.5 9 27-35 200-208 (256)
35 1ptq_A Protein kinase C delta 24.5 31 0.0011 20.2 1.3 25 104-129 13-37 (50)
36 1tot_A CREB-binding protein; z 24.0 42 0.0015 20.9 2.0 24 101-129 5-28 (52)
37 1m2v_B SEC24, protein transpor 23.4 69 0.0023 30.4 4.1 33 25-57 228-264 (926)
38 2fnf_X Putative RAS effector N 22.8 35 0.0012 22.3 1.5 24 103-130 36-59 (72)
39 3p8b_A DNA-directed RNA polyme 22.7 34 0.0012 23.9 1.4 30 19-54 17-46 (81)
40 1v98_A Thioredoxin; oxidoreduc 21.6 20 0.00067 24.0 0.0 13 44-56 3-15 (140)
41 1zbd_B Rabphilin-3A; G protein 21.5 7.9 0.00027 28.6 -2.2 62 63-137 54-115 (134)
42 2jrp_A Putative cytoplasmic pr 21.5 87 0.003 21.7 3.3 26 104-129 33-60 (81)
43 1pcx_A Protein transport prote 20.2 53 0.0018 30.3 2.6 20 115-134 129-148 (810)
44 1y8f_A UNC-13 homolog A, MUNC1 20.0 36 0.0012 21.5 1.1 26 103-129 25-50 (66)
No 1
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.13 E-value=0.091 Score=35.64 Aligned_cols=38 Identities=21% Similarity=0.496 Sum_probs=28.1
Q ss_pred eEECCCCccccccccccceeEEEcCCcceEEEeecCCCe
Q 032362 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARS 120 (142)
Q Consensus 82 sVrC~~C~tVn~v~~a~q~~~v~Cg~C~t~LmYP~GA~s 120 (142)
.|||+.|..++.+= .+-...+.|.+|.++|..|.|-..
T Consensus 15 ~VkCp~C~~~q~VF-Sha~t~V~C~~Cgt~L~~PTGGKa 52 (63)
T 3j20_W 15 RVKCIDCGNEQIVF-SHPATKVRCLICGATLVEPTGGKG 52 (63)
T ss_dssp EEECSSSCCEEEEE-SSCSSCEECSSSCCEEEECCSSSC
T ss_pred EEECCCCCCeeEEE-ecCCeEEEccCcCCEEecCCCCcE
Confidence 57777777777663 345567888888888988888654
No 2
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=92.11 E-value=0.092 Score=35.97 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=30.5
Q ss_pred eEECCCCccccccccccceeEEEcCCcceEEEeecCCCeE
Q 032362 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSV 121 (142)
Q Consensus 82 sVrC~~C~tVn~v~~a~q~~~v~Cg~C~t~LmYP~GA~sV 121 (142)
.|||+.|..++.+=+ +-...+.|.+|.++|..|.|-..-
T Consensus 7 ~VKCp~C~niq~VFS-hA~tvV~C~~Cg~~L~~PTGGKA~ 45 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFD-HPSTIVKCIICGRTVAEPTGGKGN 45 (66)
T ss_dssp EEECTTTCCEEEEES-SCSSCEECSSSCCEEEECCSSSCE
T ss_pred EEECCCCCCceEEEe-cCceEEEcccCCCEEeecCCccee
Confidence 588999988887643 455678999999999999986543
No 3
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=91.11 E-value=0.25 Score=34.95 Aligned_cols=45 Identities=22% Similarity=0.570 Sum_probs=28.1
Q ss_pred eEECCCCccccccccccceeEEEcCCcceEEEeecCCCeEeCCcCc
Q 032362 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCN 127 (142)
Q Consensus 82 sVrC~~C~tVn~v~~a~q~~~v~Cg~C~t~LmYP~GA~sVkCa~C~ 127 (142)
.|+|+.|..++.+-+ +-...|.|.+|.++|..|.|-..-.=.-|.
T Consensus 32 ~VkCp~C~n~q~VFS-hA~t~V~C~~Cg~~L~~PTGGKA~l~egc~ 76 (81)
T 2xzm_6 32 DVKCAQCQNIQMIFS-NAQSTIICEKCSAILCKPTGGKVQIQAGCA 76 (81)
T ss_dssp EEECSSSCCEEEEET-TCSSCEECSSSCCEEEEECSSCEEECSSCE
T ss_pred EeECCCCCCeeEEEe-cCccEEEccCCCCEEeecCCCCeEecCCcc
Confidence 356666666665532 344567788888888888776654434443
No 4
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=90.10 E-value=0.18 Score=34.57 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=30.5
Q ss_pred eEecCCCCccccCCCCCCceeeEEeCCccceEEeecCCCeE
Q 032362 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83 (142)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~~~aql~Cg~Cr~lLmYp~GA~sV 83 (142)
.|+|+.|..++.+= +.....+.|.+|.++|..|.|-..-
T Consensus 7 ~VKCp~C~niq~VF--ShA~tvV~C~~Cg~~L~~PTGGKA~ 45 (66)
T 1qxf_A 7 KVKCPDCEHEQVIF--DHPSTIVKCIICGRTVAEPTGGKGN 45 (66)
T ss_dssp EEECTTTCCEEEEE--SSCSSCEECSSSCCEEEECCSSSCE
T ss_pred EEECCCCCCceEEE--ecCceEEEcccCCCEEeecCCccee
Confidence 58899998888763 4556778899999999999886543
No 5
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.20 E-value=0.22 Score=33.71 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=24.4
Q ss_pred eEecCCCCccccCCCCCCceeeEEeCCccceEEeecCCC
Q 032362 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGAT 81 (142)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~~~aql~Cg~Cr~lLmYp~GA~ 81 (142)
.|+|..|..++.+= ++....+.|.+|.++|..|.|-.
T Consensus 15 ~VkCp~C~~~q~VF--Sha~t~V~C~~Cgt~L~~PTGGK 51 (63)
T 3j20_W 15 RVKCIDCGNEQIVF--SHPATKVRCLICGATLVEPTGGK 51 (63)
T ss_dssp EEECSSSCCEEEEE--SSCSSCEECSSSCCEEEECCSSS
T ss_pred EEECCCCCCeeEEE--ecCCeEEEccCcCCEEecCCCCc
Confidence 46777777776652 44456677777777777777654
No 6
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=88.55 E-value=0.27 Score=34.79 Aligned_cols=39 Identities=21% Similarity=0.524 Sum_probs=25.8
Q ss_pred eEecCCCCccccCCCCCCceeeEEeCCccceEEeecCCCeE
Q 032362 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSV 83 (142)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~~~aql~Cg~Cr~lLmYp~GA~sV 83 (142)
.|+|..|..++.+= ++....+.|.+|.++|..|.|--.-
T Consensus 32 ~VkCp~C~n~q~VF--ShA~t~V~C~~Cg~~L~~PTGGKA~ 70 (81)
T 2xzm_6 32 DVKCAQCQNIQMIF--SNAQSTIICEKCSAILCKPTGGKVQ 70 (81)
T ss_dssp EEECSSSCCEEEEE--TTCSSCEECSSSCCEEEEECSSCEE
T ss_pred EeECCCCCCeeEEE--ecCccEEEccCCCCEEeecCCCCeE
Confidence 46777777777652 3445667777777777777775543
No 7
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=87.97 E-value=0.22 Score=35.32 Aligned_cols=44 Identities=18% Similarity=0.462 Sum_probs=25.5
Q ss_pred eEECCCCccccccccccceeEEEcCCcceEEEeecCCCeEeCCcC
Q 032362 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVC 126 (142)
Q Consensus 82 sVrC~~C~tVn~v~~a~q~~~v~Cg~C~t~LmYP~GA~sVkCa~C 126 (142)
.|+|+.|..++.+=+ +-...|.|.+|.++|..|.|-..-.=..|
T Consensus 34 ~VkCp~C~~~q~VFS-ha~t~V~C~~Cg~~L~~PTGGKa~l~egc 77 (82)
T 3u5c_b 34 DVKCPGCLNITTVFS-HAQTAVTCESCSTILCTPTGGKAKLSEGT 77 (82)
T ss_dssp EEECTTSCSCEEEES-BCSSCCCCSSSCCCCEECCSSBCEECSSC
T ss_pred EEECCCCCCeeEEEe-cCCeEEEccccCCEEeccCCCCeEecCCc
Confidence 456666666665432 33445667777777777777655444444
No 8
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=83.91 E-value=0.31 Score=34.53 Aligned_cols=40 Identities=25% Similarity=0.468 Sum_probs=26.6
Q ss_pred eEecCCCCccccCCCCCCceeeEEeCCccceEEeecCCCeEE
Q 032362 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQ 84 (142)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~~~aql~Cg~Cr~lLmYp~GA~sVr 84 (142)
.|+|..|..++.+= ++....+.|.+|.++|..|.|-..-.
T Consensus 34 ~VkCp~C~~~q~VF--Sha~t~V~C~~Cg~~L~~PTGGKa~l 73 (82)
T 3u5c_b 34 DVKCPGCLNITTVF--SHAQTAVTCESCSTILCTPTGGKAKL 73 (82)
T ss_dssp EEECTTSCSCEEEE--SBCSSCCCCSSSCCCCEECCSSBCEE
T ss_pred EEECCCCCCeeEEE--ecCCeEEEccccCCEEeccCCCCeEe
Confidence 47777777777652 34456677777777777777755443
No 9
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=83.20 E-value=0.28 Score=35.04 Aligned_cols=44 Identities=20% Similarity=0.528 Sum_probs=26.6
Q ss_pred eEECCCCccccccccccceeEEEcCCcceEEEeecCCCeEeCCcC
Q 032362 82 SVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVC 126 (142)
Q Consensus 82 sVrC~~C~tVn~v~~a~q~~~v~Cg~C~t~LmYP~GA~sVkCa~C 126 (142)
.|+|+.|..++.+=+ +-...|.|.+|.++|.-|.|-.+-.=..|
T Consensus 36 ~VkCp~C~~~~~VFS-hA~t~V~C~~CgtvL~~PTGGKa~l~egc 79 (86)
T 3iz6_X 36 DVKCQGCFNITTVFS-HSQTVVVCPGCQTVLCQPTGGKARLTEGC 79 (86)
T ss_dssp EEECTTTCCEEEEET-TCSSCCCCSSSCCCCSCCCSSSCCCSCBC
T ss_pred EEECCCCCCeeEEEe-cCCcEEEccCCCCEeecCCCCCEEecCCc
Confidence 366777766665532 34445677777777777777655444444
No 10
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=80.11 E-value=0.39 Score=34.32 Aligned_cols=38 Identities=32% Similarity=0.588 Sum_probs=24.5
Q ss_pred eEecCCCCccccCCCCCCceeeEEeCCccceEEeecCCCe
Q 032362 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 82 (142)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~~~aql~Cg~Cr~lLmYp~GA~s 82 (142)
.|+|..|..++.+= ++....+.|.+|.++|..|.|-..
T Consensus 36 ~VkCp~C~~~~~VF--ShA~t~V~C~~CgtvL~~PTGGKa 73 (86)
T 3iz6_X 36 DVKCQGCFNITTVF--SHSQTVVVCPGCQTVLCQPTGGKA 73 (86)
T ss_dssp EEECTTTCCEEEEE--TTCSSCCCCSSSCCCCSCCCSSSC
T ss_pred EEECCCCCCeeEEE--ecCCcEEEccCCCCEeecCCCCCE
Confidence 37777777777652 344556677777777777776544
No 11
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=70.66 E-value=3.3 Score=26.98 Aligned_cols=39 Identities=26% Similarity=0.572 Sum_probs=27.3
Q ss_pred ccccceeeccC--cccee----ecccCCCeEecCCCCccccCCCC
Q 032362 20 NGAQSQLVCSG--CRNLL----LYPVGATSVCCAVCNAVTAVPPP 58 (142)
Q Consensus 20 ~~~~sQlvC~g--Cr~lL----~YprGA~~VrC~~C~tvn~vpp~ 58 (142)
+.+..-+.|.. ||+.| ..-.|+..-+|..|...|.+|++
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~ 48 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPS 48 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSC
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHH
Confidence 45555677876 88776 34456677888888888888754
No 12
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=68.27 E-value=1.1 Score=31.78 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=12.3
Q ss_pred EECCCCccccccccccceeEEEcCCcceE
Q 032362 83 VQCSCCHTVNLALEANQVAHVNCGNCRML 111 (142)
Q Consensus 83 VrC~~C~tVn~v~~a~q~~~v~Cg~C~t~ 111 (142)
+.|+.|+++|.+++......-.||.|+..
T Consensus 15 ~~c~~c~~~~~~~~~r~~~~~~~~~~~~~ 43 (155)
T 2ppt_A 15 LTCLACGQANKVPSDRLAAGPKCGICGAG 43 (155)
T ss_dssp EECTTTCCEEEEEGGGTTSCCBCTTTCCB
T ss_pred EECccccccccCCcccccCCCCCCcCCcc
Confidence 44444444444443333333344444433
No 13
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=60.26 E-value=5.3 Score=24.22 Aligned_cols=27 Identities=30% Similarity=0.650 Sum_probs=14.6
Q ss_pred EEeCCccc-eEEeecCCCeEECCCCccc
Q 032362 65 LVCGGCHT-LLMYIRGATSVQCSCCHTV 91 (142)
Q Consensus 65 l~Cg~Cr~-lLmYp~GA~sVrC~~C~tV 91 (142)
+.|-.|.. .|.|-..+....|..|..|
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v 33 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYV 33 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCB
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCc
Confidence 44555554 5555555555555555553
No 14
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=59.64 E-value=10 Score=26.43 Aligned_cols=40 Identities=18% Similarity=0.281 Sum_probs=25.6
Q ss_pred CeEECCCCccccccc----cccceeEEEcCCcceEEEeecCCCe
Q 032362 81 TSVQCSCCHTVNLAL----EANQVAHVNCGNCRMLLMYQYGARS 120 (142)
Q Consensus 81 ~sVrC~~C~tVn~v~----~a~q~~~v~Cg~C~t~LmYP~GA~s 120 (142)
....|+-|+..+.+. -.+.++++.|+.|...-.++.++.+
T Consensus 22 t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ 65 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLS 65 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSC
T ss_pred CeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccC
Confidence 345677777665432 2456788888888877766665543
No 15
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=57.09 E-value=8.4 Score=23.27 Aligned_cols=31 Identities=32% Similarity=0.697 Sum_probs=23.4
Q ss_pred cceeeccCccc-eeecccCCCeEecCCCCccc
Q 032362 23 QSQLVCSGCRN-LLLYPVGATSVCCAVCNAVT 53 (142)
Q Consensus 23 ~sQlvC~gCr~-lL~YprGA~~VrC~~C~tvn 53 (142)
...++|..|.. -|.|-..+....|..|..+-
T Consensus 3 ~~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 3 NKQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SSCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred CccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 34677888877 78888777788888887754
No 16
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=54.35 E-value=37 Score=25.78 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=28.1
Q ss_pred CeEecCCCCccc----------cCCCCCCceeeEEeCCccceEEeecCCCeEECCCCc
Q 032362 42 TSVCCAVCNAVT----------AVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCH 89 (142)
Q Consensus 42 ~~VrC~~C~tvn----------~vpp~~~~~aql~Cg~Cr~lLmYp~GA~sVrC~~C~ 89 (142)
-..||+.|+.+- .-+-...+...++|+.|++.+-+- -.|+.|.
T Consensus 26 ~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~-----~~C~~Cg 78 (143)
T 2dkt_A 26 CLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQ-----QTCEDCS 78 (143)
T ss_dssp EEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSC-----SBCSSSC
T ss_pred eeEECCCCCCccchhhhhccccccccchhccceeeecccCcccccc-----CcCCCCC
Confidence 458888888742 112123456789999999999552 2676664
No 17
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=54.03 E-value=14 Score=24.89 Aligned_cols=28 Identities=25% Similarity=0.520 Sum_probs=14.6
Q ss_pred eEEeCCccceEEeecCCCeEECCCCccccc
Q 032362 64 QLVCGGCHTLLMYIRGATSVQCSCCHTVNL 93 (142)
Q Consensus 64 ql~Cg~Cr~lLmYp~GA~sVrC~~C~tVn~ 93 (142)
-+.|. |+..+.-..|+.+.+|+ |...-.
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~ 31 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVN 31 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEE
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeee
Confidence 34555 55555555555555555 554443
No 18
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=52.96 E-value=16 Score=24.60 Aligned_cols=32 Identities=28% Similarity=0.533 Sum_probs=27.1
Q ss_pred eEEEcCCcceEEEeecCCCeEeCCcCcceeeecc
Q 032362 101 AHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGV 134 (142)
Q Consensus 101 ~~v~Cg~C~t~LmYP~GA~sVkCa~C~~VT~i~~ 134 (142)
.-+.|- |...+.--.|+.+.+|+ |..+-+|..
T Consensus 3 ~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 3 IIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEEEET-TSCCEEEETTCSEEEET-TTEEEECCS
T ss_pred EEEECC-CCCEEEEcCCCcEEECC-CCCeeeece
Confidence 457888 88888889999999998 999888764
No 19
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=51.70 E-value=3.7 Score=27.98 Aligned_cols=30 Identities=23% Similarity=0.507 Sum_probs=16.1
Q ss_pred eEECCCCccccccccccceeEEEcCCcceE
Q 032362 82 SVQCSCCHTVNLALEANQVAHVNCGNCRML 111 (142)
Q Consensus 82 sVrC~~C~tVn~v~~a~q~~~v~Cg~C~t~ 111 (142)
.+.|+.|...|.+++........||.|...
T Consensus 5 ~~~c~~c~~~n~~p~~~~~~~~~~~~~~~~ 34 (148)
T 3p2a_A 5 NTVCTACMATNRLPEERIDDGAKCGRCGHS 34 (148)
T ss_dssp EEECTTTCCEEEEESSCSCSCCBCTTTCCB
T ss_pred EEECcccccccCCCCcccccCCcchhcCCc
Confidence 345555555555555444445555655554
No 20
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.76 E-value=3.3 Score=25.13 Aligned_cols=43 Identities=19% Similarity=0.505 Sum_probs=23.0
Q ss_pred CCCCccccccccccceeEEEcCCcceEEEeecCCCeEeCCcCcceeeecc
Q 032362 85 CSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGV 134 (142)
Q Consensus 85 C~~C~tVn~v~~a~q~~~v~Cg~C~t~LmYP~GA~sVkCa~C~~VT~i~~ 134 (142)
|+.|...-..+....=+|.-|..|-.. ...+|+.|+....++.
T Consensus 9 C~IC~~~~~~p~~l~CgH~fC~~Ci~~-------~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 9 CQQCQAEAKCPKLLPCLHTLCSGCLEA-------SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CSSSCSSCBCCSCSTTSCCSBTTTCSS-------SSSSCSSCCSSSSCCS
T ss_pred ceEeCCccCCeEEcCCCCcccHHHHcc-------CCCCCCcCCcEeecCC
Confidence 444444333222233455666666443 3567888877766653
No 21
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=49.26 E-value=3.3 Score=29.31 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=21.3
Q ss_pred eEecCCCCccccCCCCCCceeeEEeCCccceE
Q 032362 43 SVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLL 74 (142)
Q Consensus 43 ~VrC~~C~tvn~vpp~~~~~aql~Cg~Cr~lL 74 (142)
++.|..|+++|.+|. ......-.||.|+..|
T Consensus 14 ~~~c~~c~~~~~~~~-~r~~~~~~~~~~~~~~ 44 (155)
T 2ppt_A 14 RLTCLACGQANKVPS-DRLAAGPKCGICGAGL 44 (155)
T ss_dssp EEECTTTCCEEEEEG-GGTTSCCBCTTTCCBS
T ss_pred eEECccccccccCCc-ccccCCCCCCcCCccc
Confidence 478888888888763 2334456788887766
No 22
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=47.81 E-value=11 Score=24.41 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=14.1
Q ss_pred ecCCCeEeCCcCcceeeeccc
Q 032362 115 QYGARSVKCAVCNFVTAVGVS 135 (142)
Q Consensus 115 P~GA~sVkCa~C~~VT~i~~~ 135 (142)
-.|....+|..|...++++.+
T Consensus 28 ~~~~~~W~C~~C~~~N~~P~~ 48 (59)
T 2yrc_A 28 DYRAKLWACNFCYQRNQFPPS 48 (59)
T ss_dssp EGGGTEEECSSSCCEEECCSC
T ss_pred ECCCCEEEcccCCCcCCCCHH
Confidence 345667777777777777643
No 23
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=40.11 E-value=12 Score=25.87 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=25.8
Q ss_pred ccceeEEEcCCcceEEEeecCCCeEeCCcCccee
Q 032362 97 ANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVT 130 (142)
Q Consensus 97 a~q~~~v~Cg~C~t~LmYP~GA~sVkCa~C~~VT 130 (142)
..|-.+-.|-+|.-.+++-.++...+|..|.++-
T Consensus 22 ~~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 22 SEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHHHSCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred HhccccCcCCCCCCcceeccCCCeEECCCCCCEe
Confidence 3456677788888888888888888888887763
No 24
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=39.22 E-value=22 Score=25.47 Aligned_cols=28 Identities=21% Similarity=0.634 Sum_probs=12.5
Q ss_pred cCCcceEEEeec----CCCeEeCCcCcceeee
Q 032362 105 CGNCRMLLMYQY----GARSVKCAVCNFVTAV 132 (142)
Q Consensus 105 Cg~C~t~LmYP~----GA~sVkCa~C~~VT~i 132 (142)
|..|..+|.... +...+.|..|.|...+
T Consensus 7 Cp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 7 CRDCNNMLYPREDKENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CSSSCCBCEEEEETTTTEEEEECSSSSCEEEC
T ss_pred ccccCccCcccccCcCCCCEEECCcCCCeeec
Confidence 444444444332 2334555555554443
No 25
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=38.31 E-value=20 Score=32.94 Aligned_cols=36 Identities=28% Similarity=0.711 Sum_probs=28.3
Q ss_pred cceeeccCcccee----ecccCCCeEecCCCCccccCCCC
Q 032362 23 QSQLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPPP 58 (142)
Q Consensus 23 ~sQlvC~gCr~lL----~YprGA~~VrC~~C~tvn~vpp~ 58 (142)
.+=+-|..||+.| .+-.|....+|..|+..|.+|++
T Consensus 96 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 135 (770)
T 3efo_B 96 SGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPF 135 (770)
T ss_dssp TCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGG
T ss_pred CCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchH
Confidence 3457899999876 44567788999999999998853
No 26
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=36.80 E-value=24 Score=32.41 Aligned_cols=36 Identities=25% Similarity=0.746 Sum_probs=28.6
Q ss_pred cceeeccCcccee----ecccCCCeEecCCCCccccCCCC
Q 032362 23 QSQLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPPP 58 (142)
Q Consensus 23 ~sQlvC~gCr~lL----~YprGA~~VrC~~C~tvn~vpp~ 58 (142)
.+-+-|..||+.| .+-.|....+|..|+..|.+|++
T Consensus 92 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~ 131 (766)
T 3eh2_A 92 SGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQ 131 (766)
T ss_dssp GCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTT
T ss_pred CCCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHH
Confidence 3457899999976 34567788999999999999864
No 27
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=35.35 E-value=26 Score=21.95 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=17.9
Q ss_pred EEEcCCcceEEEeecCCCeEeCCcCccee
Q 032362 102 HVNCGNCRMLLMYQYGARSVKCAVCNFVT 130 (142)
Q Consensus 102 ~v~Cg~C~t~LmYP~GA~sVkCa~C~~VT 130 (142)
-..|..|...| +.+.+||..|.++-
T Consensus 22 pt~C~~C~~~i----~kqg~kC~~C~~~c 46 (59)
T 1rfh_A 22 PGWCDLCGREV----LRQALRCANCKFTC 46 (59)
T ss_dssp CEECTTTCSEE----CSCCEECTTTSCEE
T ss_pred CeEchhcchhh----hhCccEeCCCCCeE
Confidence 35688887777 57778888887653
No 28
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=34.89 E-value=22 Score=24.51 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=26.7
Q ss_pred ceeeEEeCCccceEEeecCCCeEECCCCcccc
Q 032362 61 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVN 92 (142)
Q Consensus 61 ~~aql~Cg~Cr~lLmYp~GA~sVrC~~C~tVn 92 (142)
|..+-.|..|...++|..++...+|..|..+-
T Consensus 24 q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDRQGTGIWQCSYCDYKF 55 (83)
T ss_dssp HHSCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred ccccCcCCCCCCcceeccCCCeEECCCCCCEe
Confidence 45667899999999999999999999998763
No 29
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=33.72 E-value=27 Score=20.71 Aligned_cols=23 Identities=22% Similarity=0.784 Sum_probs=16.4
Q ss_pred EEcCCcceEEEeecCCCeEeCCcCccee
Q 032362 103 VNCGNCRMLLMYQYGARSVKCAVCNFVT 130 (142)
Q Consensus 103 v~Cg~C~t~LmYP~GA~sVkCa~C~~VT 130 (142)
..|..|+.+|. +.++|..|.+.-
T Consensus 15 t~C~~C~~~l~-----qG~~C~~C~~~~ 37 (52)
T 1faq_A 15 AFCDICQKFLL-----NGFRCQTCGYKF 37 (52)
T ss_dssp EECTTSSSEEC-----SEEECTTTTCCB
T ss_pred cCCCCcccccc-----cCCEeCCCCCeE
Confidence 56778877663 678888887653
No 30
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=33.54 E-value=44 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.397 Sum_probs=29.3
Q ss_pred CCceeeEEeCCccceEEeecCCCeEECCCCcccccc
Q 032362 59 GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA 94 (142)
Q Consensus 59 ~~~~aql~Cg~Cr~lLmYp~GA~sVrC~~C~tVn~v 94 (142)
..++.++.|..|...---+..-...+|+.|+..|-.
T Consensus 32 ~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr 67 (79)
T 2k2d_A 32 QNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTA 67 (79)
T ss_dssp -CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEE
T ss_pred hCCEeEEECCCCCCCccCCceeecccCcCCCCcCeE
Confidence 356788999999998888887777799999998863
No 31
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=29.58 E-value=33 Score=21.97 Aligned_cols=28 Identities=29% Similarity=0.641 Sum_probs=21.1
Q ss_pred EEEcCCcceEEEeecCCCeEeCCcCcceee
Q 032362 102 HVNCGNCRMLLMYQYGARSVKCAVCNFVTA 131 (142)
Q Consensus 102 ~v~Cg~C~t~LmYP~GA~sVkCa~C~~VT~ 131 (142)
-.+|..|...+- .|.+.+||..|..+-.
T Consensus 19 ~~~C~~Cg~~i~--~gkq~~kC~dC~~~cH 46 (61)
T 4b6d_A 19 PESCVPCGKRIK--FGKLSLKCRDCRVVSH 46 (61)
T ss_dssp CEECTTTCCEEC--TTCEEEEESSSSCEEC
T ss_pred CcccccccCEEE--EeeEeeECCCCCCeEc
Confidence 367888876653 7889999999887654
No 32
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=28.68 E-value=48 Score=30.63 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=22.4
Q ss_pred eeeccCcccee----ecccCCCeEecCCCCccccCCC
Q 032362 25 QLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (142)
Q Consensus 25 QlvC~gCr~lL----~YprGA~~VrC~~C~tvn~vpp 57 (142)
-+-|..||+.| .+-.|....+|..|++.|.+|+
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcCCCch
Confidence 36677777755 3446667777777777777764
No 33
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=26.42 E-value=54 Score=21.71 Aligned_cols=23 Identities=22% Similarity=0.667 Sum_probs=10.6
Q ss_pred ccCccceeecccCCCeEecCCCC
Q 032362 28 CSGCRNLLLYPVGATSVCCAVCN 50 (142)
Q Consensus 28 C~gCr~lL~YprGA~~VrC~~C~ 50 (142)
|-+|..+++...+...|.|..|+
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~ 50 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCH 50 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTC
T ss_pred CcCCCchheecCCCCceEeCCCC
Confidence 44555544444444444444444
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.05 E-value=26 Score=27.54 Aligned_cols=9 Identities=44% Similarity=0.958 Sum_probs=5.5
Q ss_pred eccCcccee
Q 032362 27 VCSGCRNLL 35 (142)
Q Consensus 27 vC~gCr~lL 35 (142)
+|+||+.-|
T Consensus 200 ~C~GC~~~l 208 (256)
T 3na7_A 200 ACGGCFIRL 208 (256)
T ss_dssp BCTTTCCBC
T ss_pred ccCCCCeee
Confidence 566666554
No 35
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=24.46 E-value=31 Score=20.21 Aligned_cols=25 Identities=28% Similarity=0.707 Sum_probs=15.1
Q ss_pred EcCCcceEEEeecCCCeEeCCcCcce
Q 032362 104 NCGNCRMLLMYQYGARSVKCAVCNFV 129 (142)
Q Consensus 104 ~Cg~C~t~LmYP~GA~sVkCa~C~~V 129 (142)
.|..|+.+| +=.+.+.++|..|.+.
T Consensus 13 ~C~~C~~~l-~g~~~qg~~C~~C~~~ 37 (50)
T 1ptq_A 13 FCDHCGSLL-WGLVKQGLKCEDCGMN 37 (50)
T ss_dssp BCTTTCCBC-CSSSSCEEEETTTCCE
T ss_pred CcCCCCcee-eccCCccCEeCCCCCe
Confidence 466666554 4345677777777654
No 36
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=24.04 E-value=42 Score=20.87 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=17.4
Q ss_pred eEEEcCCcceEEEeecCCCeEeCCcCcce
Q 032362 101 AHVNCGNCRMLLMYQYGARSVKCAVCNFV 129 (142)
Q Consensus 101 ~~v~Cg~C~t~LmYP~GA~sVkCa~C~~V 129 (142)
..+.|.+|... + |. -+||+.|...
T Consensus 5 ~~~~Cd~C~~~-i---g~-R~~C~~C~dy 28 (52)
T 1tot_A 5 FVYTCNECKHH-V---ET-RWHCTVCEDY 28 (52)
T ss_dssp SCEEETTTTEE-E---SS-EEEESSSSSC
T ss_pred CEEECCCCCCC-C---cc-eEEcCCCCCc
Confidence 45789999987 2 64 5899998643
No 37
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=23.43 E-value=69 Score=30.37 Aligned_cols=33 Identities=21% Similarity=0.531 Sum_probs=23.9
Q ss_pred eeeccCcccee----ecccCCCeEecCCCCccccCCC
Q 032362 25 QLVCSGCRNLL----LYPVGATSVCCAVCNAVTAVPP 57 (142)
Q Consensus 25 QlvC~gCr~lL----~YprGA~~VrC~~C~tvn~vpp 57 (142)
-+-|..||+.| .+-.|....+|..|++.|.+|+
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N~~P~ 264 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPM 264 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCG
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCCCCch
Confidence 46788888765 3456777788888888887764
No 38
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=22.81 E-value=35 Score=22.31 Aligned_cols=24 Identities=25% Similarity=0.585 Sum_probs=16.0
Q ss_pred EEcCCcceEEEeecCCCeEeCCcCccee
Q 032362 103 VNCGNCRMLLMYQYGARSVKCAVCNFVT 130 (142)
Q Consensus 103 v~Cg~C~t~LmYP~GA~sVkCa~C~~VT 130 (142)
..|..|.-+| +.+.+||..|.+.-
T Consensus 36 t~C~~C~~~l----~~qG~kC~~C~~~c 59 (72)
T 2fnf_X 36 GWCDLCGREV----LRQALRCANCKFTC 59 (72)
T ss_dssp CBCTTTSSBC----SSCCEECTTSSCEE
T ss_pred cchhhhhHHH----HhCcCccCCCCCee
Confidence 3477777666 56667777776653
No 39
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=22.70 E-value=34 Score=23.89 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=18.2
Q ss_pred CccccceeeccCccceeecccCCCeEecCCCCcccc
Q 032362 19 ANGAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA 54 (142)
Q Consensus 19 ~~~~~sQlvC~gCr~lL~YprGA~~VrC~~C~tvn~ 54 (142)
.+..|....|..|+.++.+. .|+.|..-+.
T Consensus 17 ~~~~m~~rAC~~C~~v~~~d------~CPnCgs~~~ 46 (81)
T 3p8b_A 17 RGSHMSEKACRHCHYITSED------RCPVCGSRDL 46 (81)
T ss_dssp -----CCEEETTTCBEESSS------SCTTTCCCCE
T ss_pred CCcchhHHHHhhCCCccCCC------CCCCCCCCcc
Confidence 35566777888888887553 4888876543
No 40
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=21.56 E-value=20 Score=24.03 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=0.0
Q ss_pred EecCCCCccccCC
Q 032362 44 VCCAVCNAVTAVP 56 (142)
Q Consensus 44 VrC~~C~tvn~vp 56 (142)
++|+.|.+++..+
T Consensus 3 ~~~~~~~~~~~~~ 15 (140)
T 1v98_A 3 VTCPKCGAKNRLG 15 (140)
T ss_dssp -------------
T ss_pred eEcccccccccCC
Confidence 5566666666654
No 41
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.53 E-value=7.9 Score=28.64 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=41.3
Q ss_pred eeEEeCCccceEEeecCCCeEECCCCccccccccccceeEEEcCCcceEEEeecCCCeEeCCcCcceeeecccce
Q 032362 63 AQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTAVGVSNH 137 (142)
Q Consensus 63 aql~Cg~Cr~lLmYp~GA~sVrC~~C~tVn~v~~a~q~~~v~Cg~C~t~LmYP~GA~sVkCa~C~~VT~i~~~~~ 137 (142)
++-.|.-|...+- ..+.....|..|+ +-.|..|+.-.-+-.......|..|+.-.++-...+
T Consensus 54 ~~~~C~~C~~~~g-~l~~~g~~C~~C~------------~~VC~~C~~~~~~~~~~~~W~C~vC~k~rel~~kSG 115 (134)
T 1zbd_B 54 GVNRCILCGEQLG-MLGSASVVCEDCK------------KNVCTKCGVETSNNRPHPVWLCKICLEQREVWKRSG 115 (134)
T ss_dssp SSSBCSSSCCBCS-TTSCCEEECTTTC------------CEEETTSEEECCCSSSSCCEEEHHHHHHHHHHHHTS
T ss_pred CCccccccCCCcc-cccCCCCCCCCCC------------cccccccCCccCCCCCccceechhhHHHHHHHHhhh
Confidence 3456777777775 3445567888775 457888888765545567788888887666644433
No 42
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.48 E-value=87 Score=21.66 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=14.2
Q ss_pred EcCCcceEE--EeecCCCeEeCCcCcce
Q 032362 104 NCGNCRMLL--MYQYGARSVKCAVCNFV 129 (142)
Q Consensus 104 ~Cg~C~t~L--mYP~GA~sVkCa~C~~V 129 (142)
.|-.|...| .=.=||.++-|..|+..
T Consensus 33 fCPeCgq~Le~lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQVLKACGAVDYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCEEEETTEEEECCTTTTCC
T ss_pred cCcchhhHHHHHHhcCCcCeeeccCCCE
Confidence 444444444 33446667777777653
No 43
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=20.17 E-value=53 Score=30.34 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=16.0
Q ss_pred ecCCCeEeCCcCcceeeecc
Q 032362 115 QYGARSVKCAVCNFVTAVGV 134 (142)
Q Consensus 115 P~GA~sVkCa~C~~VT~i~~ 134 (142)
=.|....+|.-|.+.|+++.
T Consensus 129 ~~~g~~W~C~~C~~~N~~P~ 148 (810)
T 1pcx_A 129 IEQGRRWRCNFCRLANDVPM 148 (810)
T ss_dssp ETTTTEEECTTTCCEEECCG
T ss_pred eCCCCEEEccCCCCcCCCch
Confidence 35778899999999988864
No 44
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=20.03 E-value=36 Score=21.49 Aligned_cols=26 Identities=23% Similarity=0.672 Sum_probs=16.3
Q ss_pred EEcCCcceEEEeecCCCeEeCCcCcce
Q 032362 103 VNCGNCRMLLMYQYGARSVKCAVCNFV 129 (142)
Q Consensus 103 v~Cg~C~t~LmYP~GA~sVkCa~C~~V 129 (142)
..|..|+.+| +-.+.+.++|..|.+.
T Consensus 25 t~C~~C~~~l-~Gl~~qg~~C~~C~~~ 50 (66)
T 1y8f_A 25 TYCYECEGLL-WGIARQGMRCTECGVK 50 (66)
T ss_dssp CCCTTTCCCC-CSSCCEEEEETTTCCE
T ss_pred cChhhcChhh-cccCcceeEcCCCCCe
Confidence 3477776655 4445677777777654
Done!