BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032363
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLN4|RK27_ARATH 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana
GN=RPL27 PE=2 SV=1
Length = 198
Score = 188 bits (478), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 107/140 (76%), Positives = 120/140 (85%), Gaps = 7/140 (5%)
Query: 1 MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPK-SVTVSLPPT---SPLPLTIESA 56
MAT SMS +LIG+FKGLSLSS+SS +GD + PK S TV+LP +P+PLTIESA
Sbjct: 3 MAT-SMSLNLIGAFKGLSLSSTSSFL--RGDLSFSPKTSFTVTLPLENLQAPIPLTIESA 59
Query: 57 HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSL 116
HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTKFH GKNVG+GKDHTIFSL
Sbjct: 60 HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSL 119
Query: 117 IDGLVKFEKFGPDRKQVKYF 136
IDGLVKFEKFGPDRK++ +
Sbjct: 120 IDGLVKFEKFGPDRKKISVY 139
>sp|P30155|RK27_TOBAC 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum
GN=RPL27 PE=1 SV=1
Length = 179
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/136 (77%), Positives = 115/136 (84%), Gaps = 9/136 (6%)
Query: 5 SMSASLIGSFKGLSLSSSSSSSFLKGDF----TVCPKSVTVSLPPTSPLPLTIESAHKKG 60
++S SL+G+FKGLSL+SSSS KGDF V PK +VS P SPL TIESAHKKG
Sbjct: 2 AVSFSLVGAFKGLSLASSSSFL--KGDFGAAFPVAPK-FSVSFPLKSPL--TIESAHKKG 56
Query: 61 AGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGL 120
AGSTKNGRDS GQRLGVKIFGDQVAKPG+IIVRQRGTKFHPGKNVGLGKDHTIFSLIDGL
Sbjct: 57 AGSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGL 116
Query: 121 VKFEKFGPDRKQVKYF 136
VKFEKFGPDRK++ +
Sbjct: 117 VKFEKFGPDRKKISVY 132
>sp|O65037|RK27_ORYSJ 50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp.
japonica GN=RPL27 PE=2 SV=1
Length = 195
Score = 161 bits (408), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 90/140 (64%), Positives = 109/140 (77%), Gaps = 7/140 (5%)
Query: 4 ASMSASLIGSFKGLSLSSSSSSS----FLKGDFTVCPKSVTVSL--PPTSPLP-LTIESA 56
ASM+ +L+G+FKG+SLSS SS FL+ D V + P T P+ LTI+ A
Sbjct: 2 ASMAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQMA 61
Query: 57 HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSL 116
HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAII+RQRGT+ +PG NVG+GKDHT+FSL
Sbjct: 62 HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFSL 121
Query: 117 IDGLVKFEKFGPDRKQVKYF 136
IDGLVKFEK+GPD+K+V +
Sbjct: 122 IDGLVKFEKYGPDKKKVSVY 141
>sp|A6Q4D3|RL27_NITSB 50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2)
GN=rpmA PE=3 SV=1
Length = 85
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 55/83 (66%), Positives = 68/83 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGTK HPG NVGLGKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFAI 138
LIDG+VKFE++G DR++V + +
Sbjct: 62 LIDGVVKFERYGKDRQKVSVYPV 84
>sp|B8HUY8|RL27_CYAP4 50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 7425 / ATCC
29141) GN=rpmA PE=3 SV=1
Length = 89
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 65/83 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G +V + G I+VRQRGTKFHPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGEVVRAGNILVRQRGTKFHPGNNVGRGNDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFAI 138
IDG+V FE++G DRK++ + +
Sbjct: 62 TIDGVVTFERYGKDRKRISVYPV 84
>sp|P82190|RK27_SPIOL 50S ribosomal protein L27, chloroplastic (Fragment) OS=Spinacia
oleracea GN=RPL27 PE=1 SV=1
Length = 58
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/58 (93%), Positives = 58/58 (100%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTI 113
AHKKGAGSTKNGRDS+GQRLGVKI+GDQVAKPGAII+RQRGTKFHPGKNVG+GKDHTI
Sbjct: 1 AHKKGAGSTKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGKDHTI 58
>sp|B2IV09|RL27_NOSP7 50S ribosomal protein L27 OS=Nostoc punctiforme (strain ATCC 29133
/ PCC 73102) GN=rpmA PE=3 SV=1
Length = 98
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 64/81 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G QV + G I+VRQRGTKFHPG NVG+G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGQVVRAGNILVRQRGTKFHPGNNVGIGSDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG+V FE+ G RK+V +
Sbjct: 62 LIDGVVMFERKGKTRKKVSVY 82
>sp|A8EV84|RL27_ARCB4 50S ribosomal protein L27 OS=Arcobacter butzleri (strain RM4018)
GN=rpmA PE=3 SV=1
Length = 85
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 67/82 (81%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK +G +V + G II+RQRGT+ H G+NVG+GKDHTI+S
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKYGGEVVRAGNIIIRQRGTRVHLGQNVGMGKDHTIYS 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFA 137
LIDG+VKFE+ +RK+V +A
Sbjct: 62 LIDGVVKFEQKDKNRKKVSVYA 83
>sp|B5E957|RL27_GEOBB 50S ribosomal protein L27 OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=rpmA PE=3 SV=1
Length = 85
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 64/81 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLGKD+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LI+G+VKFE+ G DRK+V +
Sbjct: 62 LIEGVVKFERMGKDRKKVSVY 82
>sp|Q10ZG7|RL27_TRIEI 50S ribosomal protein L27 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpmA PE=3 SV=1
Length = 95
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 65/81 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G QV K G I+VRQRG+KFH G NVG+GKD+T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNSQRLGVKRYGGQVVKAGNILVRQRGSKFHAGNNVGVGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
L++G+V FE+ G RK+V +
Sbjct: 62 LVEGMVTFERKGKSRKKVSVY 82
>sp|C6E8U2|RL27_GEOSM 50S ribosomal protein L27 OS=Geobacter sp. (strain M21) GN=rpmA
PE=3 SV=1
Length = 85
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 64/81 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLGKD+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LI+G+VKFE+ G DRK+V +
Sbjct: 62 LIEGVVKFERMGRDRKKVSVY 82
>sp|B3E330|RL27_GEOLS 50S ribosomal protein L27 OS=Geobacter lovleyi (strain ATCC
BAA-1151 / DSM 17278 / SZ) GN=rpmA PE=3 SV=1
Length = 84
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 65/81 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS GQRLG K FG ++ K G II RQRGT+ HPG NVG GKD+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGELVKAGNIIYRQRGTQIHPGNNVGCGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LI+G+VKFE+ G DRK+V +
Sbjct: 62 LIEGVVKFERLGRDRKKVSVY 82
>sp|B0JQG5|RL27_MICAN 50S ribosomal protein L27 OS=Microcystis aeruginosa (strain
NIES-843) GN=rpmA PE=3 SV=1
Length = 89
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 63/81 (77%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK HPGKNVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTKVHPGKNVGRGGDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG+VKFE R+QV +
Sbjct: 62 LIDGVVKFEYKDKSRRQVSVY 82
>sp|Q7VK83|RL27_HELHP 50S ribosomal protein L27 OS=Helicobacter hepaticus (strain ATCC
51449 / 3B1) GN=rpmA PE=3 SV=1
Length = 85
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 64/78 (82%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG Q + G IIVRQRGTK HPG NVGLGKDHTI++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKRFGSQFVRAGNIIVRQRGTKVHPGDNVGLGKDHTIYA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
LIDG+VKF++ +RK+V
Sbjct: 62 LIDGVVKFQQKDKNRKKV 79
>sp|B9L606|RL27_NAUPA 50S ribosomal protein L27 OS=Nautilia profundicola (strain ATCC
BAA-1463 / DSM 18972 / AmH) GN=rpmA PE=3 SV=1
Length = 87
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 64/85 (75%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGTK HPG NVGLGKDHTI++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIYA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFAITN 140
LIDG VKFE RK+V + I N
Sbjct: 62 LIDGYVKFEIKDKQRKKVSVYPIEN 86
>sp|A5GD28|RL27_GEOUR 50S ribosomal protein L27 OS=Geobacter uraniireducens (strain Rf4)
GN=rpmA PE=3 SV=1
Length = 85
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 64/81 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLG+D+T+F+
Sbjct: 2 AHKKGVGSTRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGRDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LI+G+VKFE+ G DRK+V +
Sbjct: 62 LIEGVVKFERMGRDRKKVSVY 82
>sp|B9M3W2|RL27_GEOSF 50S ribosomal protein L27 OS=Geobacter sp. (strain FRC-32) GN=rpmA
PE=3 SV=1
Length = 85
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 64/81 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLGKD+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LI+G+VKFE+ G DRK+V +
Sbjct: 62 LIEGVVKFERLGRDRKKVSVY 82
>sp|Q747N0|RL27_GEOSL 50S ribosomal protein L27 OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=rpmA PE=3 SV=1
Length = 85
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 63/81 (77%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS +RLG K FG + K G II RQRGT+ HPG NVG GKD+T+F+
Sbjct: 2 AHKKGVGSTRNGRDSESKRLGCKKFGGETVKAGNIIYRQRGTQIHPGTNVGCGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG+VKFE+ G DRK+V +
Sbjct: 62 LIDGVVKFERLGRDRKKVSVY 82
>sp|Q2LR76|RL27_SYNAS 50S ribosomal protein L27 OS=Syntrophus aciditrophicus (strain SB)
GN=rpmA PE=3 SV=1
Length = 85
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 64/82 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS QR GVK++G Q G+II+RQ GTK HPG NVG+GKD+T+FS
Sbjct: 2 AHKKGQGSSRNGRDSNAQRRGVKVYGGQSIHAGSIIIRQLGTKIHPGNNVGMGKDYTLFS 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFA 137
LIDG+VKFE+ RK+V +A
Sbjct: 62 LIDGVVKFERLDKKRKKVSVYA 83
>sp|P56050|RL27_HELPY 50S ribosomal protein L27 OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=rpmA PE=3 SV=1
Length = 88
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 63/78 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G IIVRQRGTK HPG NVG+GKDHT+++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
LIDG+VKFE +RK+V
Sbjct: 62 LIDGVVKFEHKDRNRKKV 79
>sp|B2USC8|RL27_HELPS 50S ribosomal protein L27 OS=Helicobacter pylori (strain Shi470)
GN=rpmA PE=3 SV=1
Length = 88
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 63/78 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G IIVRQRGTK HPG NVG+GKDHT+++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
LIDG+VKFE +RK+V
Sbjct: 62 LIDGVVKFEHKDRNRKKV 79
>sp|Q1CUK6|RL27_HELPH 50S ribosomal protein L27 OS=Helicobacter pylori (strain HPAG1)
GN=rpmA PE=3 SV=1
Length = 88
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 63/78 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G IIVRQRGTK HPG NVG+GKDHT+++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
LIDG+VKFE +RK+V
Sbjct: 62 LIDGVVKFEHKDRNRKKV 79
>sp|B5ZA63|RL27_HELPG 50S ribosomal protein L27 OS=Helicobacter pylori (strain G27)
GN=rpmA PE=3 SV=1
Length = 88
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 63/78 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G IIVRQRGTK HPG NVG+GKDHT+++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
LIDG+VKFE +RK+V
Sbjct: 62 LIDGVVKFEHKDRNRKKV 79
>sp|B6JKM6|RL27_HELP2 50S ribosomal protein L27 OS=Helicobacter pylori (strain P12)
GN=rpmA PE=3 SV=1
Length = 88
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 63/78 (80%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G IIVRQRGTK HPG NVG+GKDHT+++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
LIDG+VKFE +RK+V
Sbjct: 62 LIDGVVKFEHKDRNRKKV 79
>sp|Q7MA29|RL27_WOLSU 50S ribosomal protein L27 OS=Wolinella succinogenes (strain ATCC
29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W)
GN=rpmA PE=3 SV=1
Length = 85
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 64/81 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGTK HPG NVG+G DHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGSNVGMGTDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG+VKFE+ +RK+V +
Sbjct: 62 LIDGIVKFERKDKERKKVSIY 82
>sp|Q89ZR3|RL27_BACTN 50S ribosomal protein L27 OS=Bacteroides thetaiotaomicron (strain
ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
GN=rpmA PE=3 SV=1
Length = 89
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 64/78 (82%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS+KNGR+S +RLGVKIFG + K G II+RQRGT+FHPG+N+G+GKDHT+F+
Sbjct: 2 AHKKGVGSSKNGRESHSKRLGVKIFGGEACKAGNIIIRQRGTEFHPGENIGMGKDHTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
L+DG VKF+ DR+ V
Sbjct: 62 LVDGTVKFKVGREDRRYV 79
>sp|Q39QR5|RL27_GEOMG 50S ribosomal protein L27 OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=rpmA PE=3 SV=1
Length = 85
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 63/81 (77%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS +RLG K +G + K G II RQRGT+ HPG NVG GKD+T+F+
Sbjct: 2 AHKKGVGSTRNGRDSESKRLGCKKYGGENVKAGNIIYRQRGTQIHPGTNVGCGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG+VKFE+ G DRK+V +
Sbjct: 62 LIDGVVKFERLGRDRKKVSVY 82
>sp|Q64XL7|RL27_BACFR 50S ribosomal protein L27 OS=Bacteroides fragilis (strain YCH46)
GN=rpmA PE=3 SV=1
Length = 89
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 64/78 (82%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS+KNGR+S+ +RLGVKIFG + K G IIVRQRGT+FHPG+N+G+GKDHT+F+
Sbjct: 2 AHKKGVGSSKNGRESQSKRLGVKIFGGEACKAGNIIVRQRGTEFHPGENIGMGKDHTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
L+DG V F+ DR+ V
Sbjct: 62 LVDGTVNFKVGREDRRYV 79
>sp|Q5LGR6|RL27_BACFN 50S ribosomal protein L27 OS=Bacteroides fragilis (strain ATCC
25285 / NCTC 9343) GN=rpmA PE=3 SV=1
Length = 89
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/78 (64%), Positives = 64/78 (82%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS+KNGR+S+ +RLGVKIFG + K G IIVRQRGT+FHPG+N+G+GKDHT+F+
Sbjct: 2 AHKKGVGSSKNGRESQSKRLGVKIFGGEACKAGNIIVRQRGTEFHPGENIGMGKDHTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
L+DG V F+ DR+ V
Sbjct: 62 LVDGTVNFKVGREDRRYV 79
>sp|A1AKW2|RL27_PELPD 50S ribosomal protein L27 OS=Pelobacter propionicus (strain DSM
2379) GN=rpmA PE=3 SV=1
Length = 84
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 63/81 (77%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKK GS++NGRDS+GQRLG K FG + K G II RQRGT+ HPG NVG GKD+T+F+
Sbjct: 2 AHKKAGGSSRNGRDSKGQRLGCKKFGGETVKAGNIIYRQRGTQIHPGNNVGCGKDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LI+G+V FE+ G DRK+V +
Sbjct: 62 LIEGIVTFERMGRDRKKVSVY 82
>sp|Q7NME2|RL27_GLOVI 50S ribosomal protein L27 OS=Gloeobacter violaceus (strain PCC
7421) GN=rpmA PE=3 SV=1
Length = 95
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 63/86 (73%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK +G + K G I++RQRGTK HPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGERVKAGNILIRQRGTKIHPGANVGRGSDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFAITNC 141
LI+G+V FE+ G DRK+V + +
Sbjct: 62 LIEGIVTFERLGRDRKKVSVYPLAQT 87
>sp|Q8Z0F1|RL27_NOSS1 50S ribosomal protein L27 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpmA PE=3 SV=1
Length = 92
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK FG Q G I+VRQRGTKFH G NVG+GKD T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRFGGQAVIAGNILVRQRGTKFHAGNNVGIGKDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
L+DG+V FE+ G RK+V +
Sbjct: 62 LVDGVVTFERKGKSRKKVSVY 82
>sp|A7I2Z9|RL27_CAMHC 50S ribosomal protein L27 OS=Campylobacter hominis (strain ATCC
BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rpmA PE=3
SV=1
Length = 85
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/84 (61%), Positives = 64/84 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+G DHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGIGTDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFAIT 139
LIDG+VKFE+F RKQV + ++
Sbjct: 62 LIDGVVKFERFDKTRKQVSVYPLS 85
>sp|Q9ZMD8|RL27_HELPJ 50S ribosomal protein L27 OS=Helicobacter pylori (strain J99)
GN=rpmA PE=3 SV=1
Length = 88
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 62/78 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G IIVRQRGTK HPG NVG+GKDHT+++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKIHPGNNVGMGKDHTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
LIDG+VKFE RK+V
Sbjct: 62 LIDGVVKFEHKDRSRKKV 79
>sp|Q3MCZ8|RL27_ANAVT 50S ribosomal protein L27 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rpmA PE=3 SV=1
Length = 93
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDS QRLGVK FG Q G I+VRQRGTKFH G NVG+GKD T+F+
Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRFGGQAVIAGNILVRQRGTKFHAGNNVGIGKDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
L+DG+V FE+ G RK+V +
Sbjct: 62 LVDGVVTFERKGKSRKKVSVY 82
>sp|Q8REI3|RL27_FUSNN 50S ribosomal protein L27 OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=rpmA PE=3 SV=1
Length = 94
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 64/82 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS KNGRDS + LGVK + +V K G IIVRQRGTK+H G N+G+GKDHT+F+
Sbjct: 11 AHKKGQGSVKNGRDSNPKYLGVKKYDGEVVKAGNIIVRQRGTKYHAGNNMGIGKDHTLFA 70
Query: 116 LIDGLVKFEKFGPDRKQVKYFA 137
LIDG VKFE+ G ++KQ+ ++
Sbjct: 71 LIDGYVKFERLGKNKKQISIYS 92
>sp|B0TBW5|RL27_HELMI 50S ribosomal protein L27 OS=Heliobacterium modesticaldum (strain
ATCC 51547 / Ice1) GN=rpmA PE=3 SV=1
Length = 92
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 63/83 (75%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS +RLGVK Q G I+VRQRGTK HPG NVGLG D T+F+
Sbjct: 10 AHKKGVGSSRNGRDSEAKRLGVKRSDGQAVLSGNILVRQRGTKIHPGNNVGLGSDDTLFA 69
Query: 116 LIDGLVKFEKFGPDRKQVKYFAI 138
LIDG+VKFE+ G D+KQV +A+
Sbjct: 70 LIDGVVKFERKGRDKKQVSVYAV 92
>sp|A0RR38|RL27_CAMFF 50S ribosomal protein L27 OS=Campylobacter fetus subsp. fetus
(strain 82-40) GN=rpmA PE=3 SV=1
Length = 85
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 63/81 (77%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT HPG NVG+G+DHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHPGNNVGIGRDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
L+DG VKFE+ DRK+V +
Sbjct: 62 LVDGFVKFERKDKDRKKVSVY 82
>sp|B1WWL8|RL27_CYAA5 50S ribosomal protein L27 OS=Cyanothece sp. (strain ATCC 51142)
GN=rpmA PE=3 SV=1
Length = 87
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 62/83 (74%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK HPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTKVHPGNNVGRGNDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFAI 138
LIDG+V FE R++V + +
Sbjct: 62 LIDGIVTFEYKTKSRRKVSVYPV 84
>sp|B1XPD9|RL27_SYNP2 50S ribosomal protein L27 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rpmA PE=3 SV=1
Length = 88
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/81 (61%), Positives = 62/81 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+NGRDSR QRLGVK +G Q G+I+VRQRGTK HPG NVG G D T+F+
Sbjct: 2 AHKKGTGSTRNGRDSRAQRLGVKRYGGQTVTTGSILVRQRGTKVHPGNNVGRGGDDTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
L+DG+VKFE + R++V +
Sbjct: 62 LVDGIVKFEHYKRGRRKVSVY 82
>sp|A7ZC11|RL27_CAMC1 50S ribosomal protein L27 OS=Campylobacter concisus (strain 13826)
GN=rpmA PE=3 SV=1
Length = 85
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/81 (62%), Positives = 62/81 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVGLGKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGLGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
L+DG VKFE+ +RK+V +
Sbjct: 62 LVDGFVKFERLDKNRKKVSVY 82
>sp|Q3A1D7|RL27_PELCD 50S ribosomal protein L27 OS=Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1) GN=rpmA PE=3 SV=1
Length = 84
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/82 (60%), Positives = 64/82 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKK GS+KNGRDS G+RLGVK FG Q G+I+VRQRGT HPG NVG GKD+T+++
Sbjct: 2 AHKKAGGSSKNGRDSAGKRLGVKRFGGQQVTAGSILVRQRGTTIHPGANVGCGKDYTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFA 137
L+DG+V FE+ G D+K+V +A
Sbjct: 62 LVDGVVSFERKGKDKKKVSVYA 83
>sp|B5YJ66|RL27_THEYD 50S ribosomal protein L27 OS=Thermodesulfovibrio yellowstonii
(strain ATCC 51303 / DSM 11347 / YP87) GN=rpmA PE=3 SV=1
Length = 89
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 65/83 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GS++NGRDS+ +RLGVK FG Q K G I+VRQRGTKFHPG NVG+G D+T+F+
Sbjct: 2 AHKKGVGSSRNGRDSQAKRLGVKRFGGQFVKAGNILVRQRGTKFHPGANVGVGSDYTLFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYFAI 138
LIDG+VKFE+ R +V + +
Sbjct: 62 LIDGIVKFERKDKQRLKVSVYPV 84
>sp|Q17Y99|RL27_HELAH 50S ribosomal protein L27 OS=Helicobacter acinonychis (strain
Sheeba) GN=rpmA PE=3 SV=1
Length = 88
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 61/78 (78%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G IIVRQRGTK HPG NVG+GKDHT+++
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLYA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
L DG+VKFE RK+V
Sbjct: 62 LTDGVVKFEYKDKSRKKV 79
>sp|Q30QN9|RL27_SULDN 50S ribosomal protein L27 OS=Sulfurimonas denitrificans (strain
ATCC 33889 / DSM 1251) GN=rpmA PE=3 SV=1
Length = 85
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 62/78 (79%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK +G +V PG II+RQRGTK HPGKNVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKYGGEVVIPGNIIIRQRGTKIHPGKNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQV 133
L+ G+V F + R+QV
Sbjct: 62 LVAGVVTFHRKDKKRQQV 79
>sp|Q5HX71|RL27_CAMJR 50S ribosomal protein L27 OS=Campylobacter jejuni (strain RM1221)
GN=rpmA PE=3 SV=1
Length = 84
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG VKFE+ DRK+V +
Sbjct: 62 LIDGFVKFERKDKDRKKVSVY 82
>sp|A1VXH8|RL27_CAMJJ 50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=rpmA PE=3 SV=1
Length = 84
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG VKFE+ DRK+V +
Sbjct: 62 LIDGFVKFERKDKDRKKVSVY 82
>sp|Q9PJ31|RL27_CAMJE 50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=rpmA PE=3 SV=1
Length = 84
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG VKFE+ DRK+V +
Sbjct: 62 LIDGFVKFERKDKDRKKVSVY 82
>sp|A7H1G9|RL27_CAMJD 50S ribosomal protein L27 OS=Campylobacter jejuni subsp. doylei
(strain ATCC BAA-1458 / RM4099 / 269.97) GN=rpmA PE=3
SV=1
Length = 84
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG VKFE+ DRK+V +
Sbjct: 62 LIDGFVKFERKDKDRKKVSVY 82
>sp|A8FJQ0|RL27_CAMJ8 50S ribosomal protein L27 OS=Campylobacter jejuni subsp. jejuni
serotype O:6 (strain 81116 / NCTC 11828) GN=rpmA PE=3
SV=1
Length = 84
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGT H G NVG+GKDHTIF+
Sbjct: 2 AHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTATHAGNNVGMGKDHTIFA 61
Query: 116 LIDGLVKFEKFGPDRKQVKYF 136
LIDG VKFE+ DRK+V +
Sbjct: 62 LIDGFVKFERKDKDRKKVSVY 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,396,760
Number of Sequences: 539616
Number of extensions: 2213907
Number of successful extensions: 7804
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6944
Number of HSP's gapped (non-prelim): 853
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)