Query 032363
Match_columns 142
No_of_seqs 125 out of 921
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 21:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbo_X Ribosomal protein L27; 100.0 2.6E-63 8.7E-68 400.3 -4.1 137 1-139 1-142 (198)
2 3v2d_0 50S ribosomal protein L 100.0 1.6E-49 5.4E-54 286.1 8.6 85 55-139 1-85 (85)
3 2zjr_T 50S ribosomal protein L 100.0 1.3E-49 4.6E-54 289.3 7.8 85 55-139 1-85 (91)
4 3r8s_W 50S ribosomal protein L 100.0 1.4E-43 4.7E-48 250.7 8.1 75 64-138 1-76 (76)
5 2ftc_O L27MT, MRP-L27, mitocho 100.0 2E-43 6.8E-48 246.2 6.7 68 56-123 1-69 (69)
6 2xha_A NUSG, transcription ant 95.5 0.006 2E-07 48.9 2.5 40 80-138 86-125 (193)
7 2xhc_A Transcription antitermi 95.0 0.014 4.9E-07 49.6 3.4 40 80-138 126-165 (352)
8 3m7n_A Putative uncharacterize 92.9 0.17 5.8E-06 38.5 5.4 49 83-139 2-50 (179)
9 2je6_I RRP4, exosome complex R 91.1 0.35 1.2E-05 39.0 5.5 51 81-140 15-67 (251)
10 2nn6_I 3'-5' exoribonuclease C 90.1 0.043 1.5E-06 43.2 -0.6 56 80-138 17-72 (209)
11 2ba0_A Archeal exosome RNA bin 88.7 0.38 1.3E-05 38.1 3.9 48 83-139 3-50 (229)
12 2d5d_A Methylmalonyl-COA decar 83.6 0.85 2.9E-05 28.3 2.8 36 78-123 20-55 (74)
13 1dcz_A Transcarboxylase 1.3S s 83.1 0.9 3.1E-05 28.7 2.8 38 77-124 22-59 (77)
14 2nn6_H Exosome complex exonucl 82.2 1.5 5.1E-05 36.7 4.5 50 82-139 39-88 (308)
15 2z0s_A Probable exosome comple 80.5 0.35 1.2E-05 38.3 0.1 50 82-138 9-58 (235)
16 1z6h_A Biotin/lipoyl attachmen 79.5 1.2 4.2E-05 27.6 2.4 37 77-123 13-49 (72)
17 3bbo_W Ribosomal protein L24; 77.5 0.46 1.6E-05 38.1 0.0 22 3-29 1-22 (191)
18 1qjo_A Dihydrolipoamide acetyl 77.2 2.1 7.2E-05 27.3 3.1 41 73-123 16-56 (80)
19 2lmc_B DNA-directed RNA polyme 77.0 1.4 4.9E-05 30.7 2.4 30 109-138 22-51 (84)
20 1iyu_A E2P, dihydrolipoamide a 75.9 1.4 4.7E-05 28.3 1.9 39 75-123 16-54 (79)
21 2auk_A DNA-directed RNA polyme 75.7 1.7 5.9E-05 33.6 2.8 37 78-126 65-101 (190)
22 2ejm_A Methylcrotonoyl-COA car 74.6 2.3 7.8E-05 28.8 2.9 37 77-123 28-64 (99)
23 1bdo_A Acetyl-COA carboxylase; 73.9 2.1 7.1E-05 27.4 2.4 36 78-123 26-61 (80)
24 1ghj_A E2, E2, the dihydrolipo 73.1 2.3 7.7E-05 27.2 2.5 38 76-123 20-57 (79)
25 2l5t_A Lipoamide acyltransfera 68.2 1.3 4.6E-05 28.1 0.5 37 77-123 21-57 (77)
26 2dn8_A Acetyl-COA carboxylase 67.1 4.1 0.00014 27.5 2.8 36 77-122 31-66 (100)
27 2k7v_A Dihydrolipoyllysine-res 62.0 1.2 4.1E-05 29.2 -0.7 37 77-123 16-52 (85)
28 3lu0_D DNA-directed RNA polyme 60.3 2.6 8.8E-05 42.2 1.0 59 79-139 1109-1181(1407)
29 2k32_A A; NMR {Campylobacter j 60.0 5.4 0.00018 27.1 2.4 19 77-95 15-33 (116)
30 3crk_C Dihydrolipoyllysine-res 59.4 6.6 0.00023 25.7 2.7 42 72-123 20-61 (87)
31 2nn6_G Exosome complex exonucl 58.1 10 0.00035 31.3 4.2 57 82-139 39-120 (289)
32 2kcc_A Acetyl-COA carboxylase 57.6 7.8 0.00027 25.4 2.8 37 77-123 19-55 (84)
33 1gjx_A Pyruvate dehydrogenase; 53.8 2.2 7.5E-05 27.3 -0.4 37 76-122 20-56 (81)
34 2jku_A Propionyl-COA carboxyla 53.4 3.3 0.00011 27.8 0.4 36 77-122 39-74 (94)
35 2dnc_A Pyruvate dehydrogenase 46.7 14 0.00048 25.1 2.8 41 73-123 23-63 (98)
36 2dne_A Dihydrolipoyllysine-res 40.7 15 0.00052 25.5 2.2 42 72-123 22-63 (108)
37 1k8m_A E2 component of branche 38.8 12 0.00041 25.1 1.4 41 72-122 19-59 (93)
38 1pmr_A Dihydrolipoyl succinylt 38.0 3.9 0.00013 26.3 -1.2 37 76-122 21-57 (80)
39 2qj8_A MLR6093 protein; struct 34.1 31 0.0011 27.7 3.3 39 81-125 274-312 (332)
40 1y8o_B Dihydrolipoyllysine-res 32.3 29 0.001 25.1 2.7 41 72-122 42-82 (128)
41 3lu0_D DNA-directed RNA polyme 31.1 37 0.0013 34.2 3.9 36 78-125 1004-1039(1407)
42 3dn7_A Cyclic nucleotide bindi 31.1 1.3E+02 0.0044 20.6 6.0 35 83-129 33-67 (194)
43 3csq_A Morphogenesis protein 1 28.9 23 0.00079 29.0 1.8 31 95-125 183-217 (334)
44 3cdx_A Succinylglutamatedesucc 28.4 57 0.0019 26.6 4.0 42 79-126 282-323 (354)
45 3na6_A Succinylglutamate desuc 27.9 62 0.0021 26.3 4.2 42 79-126 272-313 (331)
46 3tuf_B Stage II sporulation pr 27.6 80 0.0027 25.3 4.7 31 96-126 77-109 (245)
47 3nyy_A Putative glycyl-glycine 26.3 66 0.0023 25.7 4.0 29 98-126 123-155 (252)
48 3mdp_A Cyclic nucleotide-bindi 25.9 74 0.0025 20.4 3.5 33 83-127 32-64 (142)
49 3f6q_B LIM and senescent cell 24.5 36 0.0012 20.4 1.7 21 82-102 18-38 (72)
50 3dv8_A Transcriptional regulat 23.6 1.9E+02 0.0064 20.1 5.8 35 83-129 29-63 (220)
51 3fx3_A Cyclic nucleotide-bindi 23.4 2E+02 0.0068 20.3 6.0 35 83-129 37-71 (237)
52 1qwy_A Peptidoglycan hydrolase 22.5 88 0.003 26.0 4.1 32 95-126 180-211 (291)
No 1
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=2.6e-63 Score=400.28 Aligned_cols=137 Identities=79% Similarity=1.204 Sum_probs=82.0
Q ss_pred Cccc-cceeeeeeeeeeeeeccCCccceeecCceecc-ccceecCCCC---CCcceeEEeeeccCCCcCCCCCCCCCccc
Q 032363 1 MATA-SMSASLIGSFKGLSLSSSSSSSFLKGDFTVCP-KSVTVSLPPT---SPLPLTIESAHKKGAGSTKNGRDSRGQRL 75 (142)
Q Consensus 1 ~~~~-~~~~~~~~~f~glsl~s~~sss~~~g~~~~~~-~~~~~~~~~~---~~~~~~ir~A~KKggGSTkNGRdS~~KrL 75 (142)
|||| +|+|||+++|||||||| |||||+||.++.+ ....+++|.. .+++++|||||||++|||+|||||++|||
T Consensus 1 ~~~~~~~~~~l~~~f~g~s~ss--sssf~~~~~~~~~~~~~~~~~p~~~~~~~~~l~VRmAhKKggGSTkNGRDS~~KRL 78 (198)
T 3bbo_X 1 MAMATSMSLNLIGAFKGLSLSS--TSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGSTKNGRDSPGQRL 78 (198)
T ss_dssp ------------------------------------------------------------CCCCSSCCCCCCCCCCCCCC
T ss_pred ChHHHHHHHHHHHHhccccccc--ccceecccccccccccccccccccccccchhhheeeeeccCCCCCCCCCCCCCcee
Confidence 4544 49999999999999999 6889999998875 3333355543 67889999999999999999999999999
Q ss_pred eeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEEEEecC
Q 032363 76 GVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAIT 139 (142)
Q Consensus 76 GvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~~ 139 (142)
|||+++||+|+||+||||||||+||||+||||||||||||++||+|+|++.+++|++|+|+|++
T Consensus 79 GVK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl~~G~VkF~~~~~~Rk~VsV~p~~ 142 (198)
T 3bbo_X 79 GVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFGPDRKKISVYPRE 142 (198)
T ss_dssp SCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSSSCCCCSCCCSSCCC
T ss_pred eEEecCCeEeccCcEEEeccCceEcCCCCeeecCCCceEeccceEEEEEEcCCCcEEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999777899999999964
No 2
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=100.00 E-value=1.6e-49 Score=286.06 Aligned_cols=85 Identities=54% Similarity=0.927 Sum_probs=74.5
Q ss_pred eeeccCCCcCCCCCCCCCccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEE
Q 032363 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVK 134 (142)
Q Consensus 55 ~A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~ 134 (142)
|||||++|||+|||||++||||||+++||+|.||+||||||||+||||+||||||||||||++||+|+|++...++++|+
T Consensus 1 MAhKK~gGStkNGrdS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~Vs 80 (85)
T 3v2d_0 1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYVH 80 (85)
T ss_dssp --------CCSCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEECGGGCEEEE
T ss_pred CCcccCCCCCCCCCCCCCccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEcCCCCEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred EEecC
Q 032363 135 YFAIT 139 (142)
Q Consensus 135 V~p~~ 139 (142)
|+|++
T Consensus 81 V~p~a 85 (85)
T 3v2d_0 81 VRPLA 85 (85)
T ss_dssp EEEC-
T ss_pred EEECC
Confidence 99963
No 3
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=100.00 E-value=1.3e-49 Score=289.34 Aligned_cols=85 Identities=54% Similarity=0.846 Sum_probs=82.0
Q ss_pred eeeccCCCcCCCCCCCCCccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEE
Q 032363 55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVK 134 (142)
Q Consensus 55 ~A~KKggGSTkNGRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~ 134 (142)
|||||++|||+|||||++||||||+|+||+|.||+||||||||+||||+||||||||||||++||+|+|++..+++++|+
T Consensus 1 mAhKK~~GSt~NGRdS~~krLGvK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~r~~V~ 80 (91)
T 2zjr_T 1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKGKGARFIS 80 (91)
T ss_dssp -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEETTTEEEEE
T ss_pred CCcccCCCCCCCCCCCCCceeeEEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcCCCcEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred EEecC
Q 032363 135 YFAIT 139 (142)
Q Consensus 135 V~p~~ 139 (142)
|+|++
T Consensus 81 V~p~~ 85 (91)
T 2zjr_T 81 IEAAQ 85 (91)
T ss_dssp ECCCC
T ss_pred EEeCh
Confidence 99964
No 4
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=100.00 E-value=1.4e-43 Score=250.73 Aligned_cols=75 Identities=57% Similarity=0.856 Sum_probs=72.0
Q ss_pred CCCCCCCCCccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEe-CCCceEEEEEec
Q 032363 64 TKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF-GPDRKQVKYFAI 138 (142)
Q Consensus 64 TkNGRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~-~p~r~~V~V~p~ 138 (142)
|+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||++||+|+|++. .+++++|+|+|+
T Consensus 1 t~NGRDS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p~ 76 (76)
T 3r8s_W 1 TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE 76 (76)
T ss_dssp CCCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCCCcccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEeC
Confidence 799999999999999999999999999999999999999999999999999999999999865 468999999995
No 5
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=100.00 E-value=2e-43 Score=246.18 Aligned_cols=68 Identities=41% Similarity=0.793 Sum_probs=67.4
Q ss_pred eeccCCCcCCC-CCCCCCccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 56 AHKKGAGSTKN-GRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 56 A~KKggGSTkN-GRdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
||||++|||+| ||||++||||||+++||+|.||+||||||||+||||+||||||||||||+++|+|+|
T Consensus 1 A~KK~~GSt~N~grdS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~f 69 (69)
T 2ftc_O 1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY 69 (69)
T ss_pred CcccccCcccCCCCCCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence 89999999999 999999999999999999999999999999999999999999999999999999998
No 6
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.54 E-value=0.006 Score=48.86 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=31.5
Q ss_pred eCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEEEEec
Q 032363 80 FGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAI 138 (142)
Q Consensus 80 ~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~ 138 (142)
-+||.|.+|+||+ ||+.+.|-+||+|.|.+ +++.|-|.|.
T Consensus 86 ~dG~~V~~GdvLA----------------Kd~AIiaEIdG~V~fgk---gkrrivI~~~ 125 (193)
T 2xha_A 86 RVGTKVKQGLPLS----------------KNEEYICELDGKIVEIE---RMKKVVVQTP 125 (193)
T ss_dssp CTTCEECTTSBSS----------------TTSCSBCCSSEEEEEEE---EEEEEEEECT
T ss_pred CCCCEEcCCCEEe----------------cCCeEEEccceEEEECC---CeEEEEEECC
Confidence 3566666666666 99999999999999987 5677777774
No 7
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=95.00 E-value=0.014 Score=49.60 Aligned_cols=40 Identities=18% Similarity=0.058 Sum_probs=31.2
Q ss_pred eCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEEEEec
Q 032363 80 FGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAI 138 (142)
Q Consensus 80 ~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~ 138 (142)
-+|+.|.+|+||+ ||+.+.|-+||+|.|.+. ++.|-|.|.
T Consensus 126 ~~g~~v~~G~vla----------------k~~aiiaeidG~V~fg~~---kr~i~i~~~ 165 (352)
T 2xhc_A 126 RVGTKVKQGLPLS----------------KNEEYICELDGKIVEIER---MKKVVVQTP 165 (352)
T ss_dssp CTTCEECTTCBSB----------------SSSSCBCCSCEEEEEEEE---EEEEEEECT
T ss_pred CCCCEEccCcEEe----------------cCceEEeccceEEEECCc---EEEEEEECC
Confidence 3566666666666 999999999999999874 677777774
No 8
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=92.90 E-value=0.17 Score=38.54 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=39.7
Q ss_pred eEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEEEEecC
Q 032363 83 QVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAIT 139 (142)
Q Consensus 83 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~~ 139 (142)
+.|.||+.|.-. ..|.||.++.. .|..|+|.+-|.|++. .+.|+|.|..
T Consensus 2 ~iV~PGd~l~~~--~~~~~G~Gty~-~~~~i~as~~G~v~~~-----~~~v~V~~~~ 50 (179)
T 3m7n_A 2 RFVMPGDRIGSA--EEYVKGEGVYE-EGGELFAAVAGKLIIK-----DRVAKVESIS 50 (179)
T ss_dssp CEECTTCEEEET--TTSEECTTEEE-ETTEEEESSSEEEEEE-----TTEEEEEESS
T ss_pred eEEcCCCCCCCC--CCEeccCCEEE-eCCEEEEEEEEEEEEe-----CCEEEEEECC
Confidence 479999999864 35899999988 4889999999999982 2578888863
No 9
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=91.10 E-value=0.35 Score=39.02 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=41.0
Q ss_pred CCeEeecCcEEeecccceEEcCC--CeeecccceEEEeeceEEEEEEeCCCceEEEEEecCC
Q 032363 81 GDQVAKPGAIIVRQRGTKFHPGK--NVGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAITN 140 (142)
Q Consensus 81 ~Gq~V~~G~IIvRQRGtkfhPG~--NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~~~ 140 (142)
+++.|.||+.|... .|.||. ++.. .|..|||.+-|.|.+.. +.|+|.|.+.
T Consensus 15 ~~~iV~PGd~l~~~---~~~~G~~~Gty~-~~g~i~as~~G~v~~~~-----~~v~V~p~~~ 67 (251)
T 2je6_I 15 PRSIVVPGELLAEG---EFQIPWSPYILK-INSKYYSTVVGLFDVKD-----TQFEVIPLEG 67 (251)
T ss_dssp SSCEECTTCEEEEE---CCCCCCCTTEEE-ETTEEEECSSEEEEEET-----TEEEEEESCC
T ss_pred CCcEEcCCCCCccC---CeeeCCCCCEEE-ECCEEEEEEEEEEEEeC-----CEEEEEECCC
Confidence 58899999999853 489999 9886 57889999999998652 3588888643
No 10
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=90.13 E-value=0.043 Score=43.16 Aligned_cols=56 Identities=16% Similarity=0.087 Sum_probs=39.2
Q ss_pred eCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEEEEec
Q 032363 80 FGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAI 138 (142)
Q Consensus 80 ~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~ 138 (142)
..++.|.||+.|... ..|.||.++.. .|..|||.+-|.|.++..+...+.|+|.|.
T Consensus 17 ~~~~iV~PGd~l~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~~~~~~~~vi~V~p~ 72 (209)
T 2nn6_I 17 PPVRYCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSENGALPVVSVVRE 72 (209)
T ss_dssp ---CCCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBCTTSSBC-CBCCS
T ss_pred CCCcEEcCCCCCCCC--CCeeecCCEEE-ECCEEEEEEEEEEEEeccCCcccEEEEecC
Confidence 347789999999864 35899999876 577899999999987542223355667665
No 11
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=88.73 E-value=0.38 Score=38.13 Aligned_cols=48 Identities=15% Similarity=0.331 Sum_probs=37.7
Q ss_pred eEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEEEEecC
Q 032363 83 QVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAIT 139 (142)
Q Consensus 83 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~~ 139 (142)
+.|.||+.|.. ..|.||.++.. .|..|||.+-|.|.+.. +.|+|.|..
T Consensus 3 ~iV~PGd~l~~---~~~~~G~Gty~-~~g~i~as~~G~v~~~~-----~~v~V~p~~ 50 (229)
T 2ba0_A 3 KIVLPGDLLST---NPRAAGYGTYV-EGGKVYAKIIGLFDQTE-----THVRVIPLK 50 (229)
T ss_dssp CEECTTCEEES---CTTSBCTTEEE-ETTEEEECSSEEEEECS-----SCEEEEECS
T ss_pred CEEcCCCCccc---CCeEecCCEEE-eCCEEEEEEEEEEEEeC-----CEEEEEeCC
Confidence 67999999983 34889999887 78889999999988642 247888754
No 12
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=83.62 E-value=0.85 Score=28.30 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=28.8
Q ss_pred EeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 78 KIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 78 K~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
..-.|+.|.+|++|++-.-.+. ..+|.|+.+|+|.-
T Consensus 20 ~v~~G~~V~~G~~l~~i~~~~~----------~~~i~ap~~G~v~~ 55 (74)
T 2d5d_A 20 LVRVGDRVRVGQGLLVLEAMKM----------ENEIPSPRDGVVKR 55 (74)
T ss_dssp CCCTTCEECTTCEEEEEEETTE----------EEEEECSSSEEEEE
T ss_pred EcCCCCEeCCCCEEEEEecccc----------eEEEeCCCCEEEEE
Confidence 4558999999999998655443 46899999999964
No 13
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=83.12 E-value=0.9 Score=28.68 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=29.8
Q ss_pred eEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEE
Q 032363 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFE 124 (142)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~ 124 (142)
+..-.|+.|.+|++|++-.-.++ ..+|.|+.+|+|.-.
T Consensus 22 ~~v~~G~~V~~G~~L~~l~~~~~----------~~~i~Ap~~G~v~~~ 59 (77)
T 1dcz_A 22 ILVKEGDTVKAGQTVLVLEAMKM----------ETEINAPTDGKVEKV 59 (77)
T ss_dssp ECCCTTCEECTTSEEEEEEETTE----------EEEEECSSSEEEEEE
T ss_pred EEcCCcCEEcCCCEEEEEEccce----------eEEEECCCCEEEEEE
Confidence 44558999999999998655443 578999999998753
No 14
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=82.24 E-value=1.5 Score=36.66 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=38.0
Q ss_pred CeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEEEEecC
Q 032363 82 DQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAIT 139 (142)
Q Consensus 82 Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~~ 139 (142)
++.|.||+.|... ..|.||.++.. .|..|||.+-|.|... .+.|+|.|..
T Consensus 39 ~~iVlPGd~L~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~-----~~~vsV~p~~ 88 (308)
T 2nn6_H 39 KHLVVPGDTITTD--TGFMRGHGTYM-GEEKLIASVAGSVERV-----NKLICVKALK 88 (308)
T ss_dssp -CBCCTTCBCCCC--TTCCBCTTEEE-CSSSEEECSSEEEEEE-----TTEEEEEESS
T ss_pred CcEEeCCCCCCCC--CCEeecCCeEE-ECCEEEEEEEEEEEec-----CCEEEEeeCC
Confidence 4679999999853 35889999876 5678999999998854 2468888754
No 15
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=80.54 E-value=0.35 Score=38.30 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred CeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCCceEEEEEec
Q 032363 82 DQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAI 138 (142)
Q Consensus 82 Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~ 138 (142)
++.|.||+.|... .|.||.++.. .|..|+|.+-|.|.+.. ++..|+|.|.
T Consensus 9 ~~iV~PGd~l~~~---~~~~G~Gty~-~~~~I~Asv~G~v~~~~---~~~~vsV~p~ 58 (235)
T 2z0s_A 9 GRIVVPGEPLPEE---VEASPPYVID-YKGVKRATVVGLLREKG---DGGGRAFVKL 58 (235)
T ss_dssp ---------------------------------------------------------
T ss_pred CcEEeCCCCcccC---ceEcCCCEEE-ECCEEEEEEeEEEEEeC---CccEEEEEeC
Confidence 5789999999853 4899998876 67789999999988653 2245777764
No 16
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=79.52 E-value=1.2 Score=27.59 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=28.2
Q ss_pred eEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
+..-.|+.|.+|++|++=.-.+ ...+|.|+.+|+|.-
T Consensus 13 ~~v~~G~~V~~G~~l~~i~~~~----------~~~~i~ap~~G~v~~ 49 (72)
T 1z6h_A 13 VHVKAGDQIEKGQEVAILESMK----------MEIPIVADRSGIVKE 49 (72)
T ss_dssp ECCCTTCEECTTCEEEEEEETT----------EEEEEECSSCEEEEE
T ss_pred EEcCCcCEECCCCEEEEEECCc----------cEEEEECCCCcEEEE
Confidence 4455799999999999843322 367899999999863
No 17
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=77.53 E-value=0.46 Score=38.10 Aligned_cols=22 Identities=59% Similarity=0.697 Sum_probs=0.0
Q ss_pred cccceeeeeeeeeeeeeccCCccceee
Q 032363 3 TASMSASLIGSFKGLSLSSSSSSSFLK 29 (142)
Q Consensus 3 ~~~~~~~~~~~f~glsl~s~~sss~~~ 29 (142)
||+| +|-++|.+||||| ++||-
T Consensus 1 ~~~~--~~~~~~~~~~~~~---~~~~~ 22 (191)
T 3bbo_W 1 MAAM--VLQSSFTSLSLSS---NSFLG 22 (191)
T ss_dssp ---------------------------
T ss_pred Ccch--hhhhhhhcccccc---ccccC
Confidence 4567 7889999999976 55664
No 18
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=77.24 E-value=2.1 Score=27.27 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=31.5
Q ss_pred ccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 73 QRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 73 KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
+=.=|.+-.|+.|.+|++|++-.-.+ -..+|.|+.+|+|.-
T Consensus 16 ~v~~~~v~~G~~V~~G~~l~~ie~~~----------~~~~i~Ap~~G~v~~ 56 (80)
T 1qjo_A 16 EVTEVMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVKE 56 (80)
T ss_dssp EEEECCCCTTCEECBTSEEEEEESSS----------SCEEEEBSSCEEEEE
T ss_pred EEEEEEcCCCCEECCCCEEEEEEcCC----------ceEEEeCCCCEEEEE
Confidence 33345566899999999999865443 368899999999974
No 19
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=76.98 E-value=1.4 Score=30.74 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=22.5
Q ss_pred ccceEEEeeceEEEEEEeCCCceEEEEEec
Q 032363 109 KDHTIFSLIDGLVKFEKFGPDRKQVKYFAI 138 (142)
Q Consensus 109 rD~TLfAl~~G~V~F~k~~p~r~~V~V~p~ 138 (142)
|+..+.|-++|+|.|.+.....+.|.|.|.
T Consensus 22 K~~AiIaEi~G~V~i~~~~k~~r~i~I~~~ 51 (84)
T 2lmc_B 22 KEPAILAEISGIVSFGKETKGKRRLVITPV 51 (84)
T ss_dssp --CCBSBSSSEEEEEECCSSSCCEEEEEES
T ss_pred CCCEEeecCccEEEEeEecCCcEEEEEEEC
Confidence 567788999999999874356677888875
No 20
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=75.91 E-value=1.4 Score=28.29 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=30.6
Q ss_pred ceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 75 LGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 75 LGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
.-|.+-.|+.|.+|++|+.---.+. ..+|.|+.+|+|.-
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~k~----------~~~i~Ap~~G~v~~ 54 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESAKA----------SMEVPSPKAGVVKS 54 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECSSC----------EEEEECSSSSEEEE
T ss_pred EEEecCCCCEEcCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 3455668999999999998765443 47899999999874
No 21
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=75.74 E-value=1.7 Score=33.61 Aligned_cols=37 Identities=14% Similarity=0.379 Sum_probs=26.2
Q ss_pred EeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEe
Q 032363 78 KIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 126 (142)
Q Consensus 78 K~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~ 126 (142)
.+-+||.|.+|++|+ .|-| -.+-|.+-.+|+|+|+..
T Consensus 65 ~V~dG~~V~~G~~la-----ewDp-------~t~pIisE~~G~V~f~di 101 (190)
T 2auk_A 65 AKGDGEQVAGGETVA-----NWDP-------HTMPVITEVSGFVRFTDM 101 (190)
T ss_dssp SSCTTCEECTTCEEE-----ECCS-------SEEEEECSSCEEEEEESC
T ss_pred EecCCCEEcCCCEEE-----EEcC-------cCCcEEeccccEEEEEec
Confidence 344677777777776 3434 235699999999999753
No 22
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=74.63 E-value=2.3 Score=28.84 Aligned_cols=37 Identities=32% Similarity=0.312 Sum_probs=29.1
Q ss_pred eEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
+.+-.|+.|.+|++|++---.++ ..+|.|+.+|+|.-
T Consensus 28 ~~v~~Gd~V~~Gq~L~~ie~~~~----------~~~i~AP~~G~V~~ 64 (99)
T 2ejm_A 28 VFVKAGDKVKAGDSLMVMIAMKM----------EHTIKSPKDGTVKK 64 (99)
T ss_dssp ECCCTTEEECSSCEEEEEESSSS----------EEEEECSSCEEEEE
T ss_pred EECCCCCEECCCCEEEEEEccce----------eEEEECCCCeEEEE
Confidence 55568999999999998544332 46899999999874
No 23
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=73.86 E-value=2.1 Score=27.38 Aligned_cols=36 Identities=22% Similarity=0.065 Sum_probs=28.7
Q ss_pred EeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 78 KIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 78 K~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
.+-.|+.|.+|+.|++---.+. ...|.|+.+|+|.-
T Consensus 26 ~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 61 (80)
T 1bdo_A 26 FIEVGQKVNVGDTLCIVEAMKM----------MNQIEADKSGTVKA 61 (80)
T ss_dssp SCCTTCEECTTCEEEEEEETTE----------EEEEECSSCEEEEE
T ss_pred ccCCcCEECCCCEEEEEEeccE----------EEEEECCCCEEEEE
Confidence 4558999999999998654432 47899999999974
No 24
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=73.15 E-value=2.3 Score=27.24 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.1
Q ss_pred eeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 76 GVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 76 GvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
=|.+-.|+.|.+|++|++---.+. .+.|.|+.+|+|.-
T Consensus 20 ~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (79)
T 1ghj_A 20 TWHKKPGEAVKRDELIVDIETDKV----------VMEVLAEADGVIAE 57 (79)
T ss_dssp CCSSCTTSEECSSCEEEEEECSSC----------EEEEECSSCEEEEE
T ss_pred EEEcCCCCEECCCCEEEEEEccce----------eEEEEcCCCEEEEE
Confidence 355568999999999998655443 47899999999874
No 25
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=68.24 E-value=1.3 Score=28.11 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=29.1
Q ss_pred eEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
+.+-.|+.|.+|+.|++---.+. ..+|.|+.+|+|.-
T Consensus 21 ~~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (77)
T 2l5t_A 21 WDVKEGDMVEKDQDLVEVMTDKV----------TVKIPSPVRGKIVK 57 (77)
T ss_dssp CSCCTTCEECSCCCCCEEESSSC----------EEECCCCCCEEEEE
T ss_pred EEeCCCCEECCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 45568999999999998655433 47899999999874
No 26
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.13 E-value=4.1 Score=27.49 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=29.0
Q ss_pred eEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEE
Q 032363 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVK 122 (142)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 122 (142)
+.+-.|+.|.+|+.|++---.|. .++|.|+.+|+|.
T Consensus 31 ~~v~~Gd~V~~Gq~L~~le~~k~----------~~~i~Ap~~G~V~ 66 (100)
T 2dn8_A 31 YTVEDGGHVEAGSSYAEMEVMKM----------IMTLNVQERGRVK 66 (100)
T ss_dssp ESSCTTEEECTTCEEEEEEETTE----------EEEEECSSSEEEE
T ss_pred EEcCCcCEECCCCEEEEEEecce----------EEEEEcCCCEEEE
Confidence 44558999999999998654332 5789999999998
No 27
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=62.02 E-value=1.2 Score=29.20 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=29.7
Q ss_pred eEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
|.+-.|+.|.+|++|++---.+ ..++|.|+.+|+|.-
T Consensus 16 ~~v~~Gd~V~~G~~L~~ie~~k----------~~~~i~Ap~~G~V~~ 52 (85)
T 2k7v_A 16 VMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVKE 52 (85)
T ss_dssp CCCSSSCCCCCSSSCCCCSCCC----------SEEEEECSSCBCCCE
T ss_pred EEcCCCCEEcCCCEEEEEEccc----------cEEEEECCCCEEEEE
Confidence 4566899999999999865544 468899999999863
No 28
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=60.29 E-value=2.6 Score=42.20 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=39.5
Q ss_pred eeCCeEeecCcEEeec--ccceEEcCCC------------eeecccceEEEeeceEEEEEEeCCCceEEEEEecC
Q 032363 79 IFGDQVAKPGAIIVRQ--RGTKFHPGKN------------VGLGKDHTIFSLIDGLVKFEKFGPDRKQVKYFAIT 139 (142)
Q Consensus 79 ~~~Gq~V~~G~IIvRQ--RGtkfhPG~N------------Vg~GrD~TLfAl~~G~V~F~k~~p~r~~V~V~p~~ 139 (142)
+.+|+.|.+|+||+|= -..|- .+= ..-=||..+.|.++|+|.|.+..++++.|-|.|.+
T Consensus 1109 v~~g~~v~~g~vlakip~~~~k~--~DIt~GLprv~eLfEar~pk~~a~i~ei~G~v~~~~~~~~~~~~~i~~~~ 1181 (1407)
T 3lu0_D 1109 LEDGVQISSGDTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVD 1181 (1407)
T ss_dssp CCSSCEECTTCEEECCCCCCCCS--SCCCCSHHHHHHHHTTCCCSSCCCCCSSCSCCEECCCCSSCEEEECCCSS
T ss_pred ecCCCEeccCceEEecchhhccc--cchhcCcHHHHHHHhccCCCCceEEeccceEEEEeeccCCceEEEEEeCC
Confidence 4589999999999982 11111 110 11126788999999999997665666777776653
No 29
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=59.97 E-value=5.4 Score=27.05 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=15.2
Q ss_pred eEeeCCeEeecCcEEeecc
Q 032363 77 VKIFGDQVAKPGAIIVRQR 95 (142)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQR 95 (142)
+.+-.|+.|++|++|++-.
T Consensus 15 v~v~~G~~V~~Gq~L~~ld 33 (116)
T 2k32_A 15 KLFKAGDKVKKGQTLFIIE 33 (116)
T ss_dssp ECSCTTSEECTTCEEEEEE
T ss_pred EECCCcCEECCCCEEEEEC
Confidence 4455899999999999844
No 30
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=59.44 E-value=6.6 Score=25.72 Aligned_cols=42 Identities=7% Similarity=-0.052 Sum_probs=32.0
Q ss_pred CccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 72 GQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 72 ~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
++=.=|.+-.|+.|.+|+.|+.---.|. .+.|.|+.+|+|.-
T Consensus 20 G~v~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 61 (87)
T 3crk_C 20 GTVQRWEKKVGEKLSEGDLLAEIETDXA----------TIGFEVQEEGYLAK 61 (87)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEEE
T ss_pred EEEEEEEcCCCCEEcCCCEEEEEECCcc----------cceeecCcCcEEEE
Confidence 3334466678999999999998665442 57899999999873
No 31
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=58.11 E-value=10 Score=31.35 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=30.7
Q ss_pred CeEeecCcEEeecc-----c----------------ceEEc--CCCeeecccceEEEeeceEEEEEEeC--CCceEEEEE
Q 032363 82 DQVAKPGAIIVRQR-----G----------------TKFHP--GKNVGLGKDHTIFSLIDGLVKFEKFG--PDRKQVKYF 136 (142)
Q Consensus 82 Gq~V~~G~IIvRQR-----G----------------tkfhP--G~NVg~GrD~TLfAl~~G~V~F~k~~--p~r~~V~V~ 136 (142)
++.|.||+.|...- + ..|.+ |.++.. .|..|||.+-|.|++.... .....+.|.
T Consensus 39 ~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~-~~~~I~as~aG~l~~~~~~~~~~~~~v~V~ 117 (289)
T 2nn6_G 39 GQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRR-CGDRLLVTKCGRLRHKEPGSGSGGGVYWVD 117 (289)
T ss_dssp SSBCCSSEEECCSCSCCEECSSEEECC------------------------CCCEEECSCCEEEEECCTTTSSCCEEEEE
T ss_pred CcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEE-ECCEEEEEEeEeEEeccCCccCccceEEEE
Confidence 67799999997642 1 16778 887765 4778999999999876321 011356777
Q ss_pred ecC
Q 032363 137 AIT 139 (142)
Q Consensus 137 p~~ 139 (142)
|..
T Consensus 118 ~~~ 120 (289)
T 2nn6_G 118 SQQ 120 (289)
T ss_dssp CCC
T ss_pred ecC
Confidence 653
No 32
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=57.55 E-value=7.8 Score=25.36 Aligned_cols=37 Identities=16% Similarity=0.071 Sum_probs=29.0
Q ss_pred eEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
+.+-.|+.|.+|+.|+.---.| -...|.|+.+|+|.-
T Consensus 19 ~~v~~Gd~V~~G~~l~~ie~~k----------~~~~i~Ap~~G~v~~ 55 (84)
T 2kcc_A 19 YTVEDGGHVEAGSSYAEMEVMK----------MIMTLNVQERGRVKY 55 (84)
T ss_dssp ESSCTTEEECTTCEEEEEECSS----------CEEEEECSSSEEEEE
T ss_pred EECCCCCEECCCCEEEEEEecc----------eeEEEECCCCEEEEE
Confidence 4556899999999999865433 247899999999874
No 33
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=53.85 E-value=2.2 Score=27.32 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=28.4
Q ss_pred eeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEE
Q 032363 76 GVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVK 122 (142)
Q Consensus 76 GvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 122 (142)
=|.+-.|+.|.+|+.|+.---.+ -.++|.|+.+|+|.
T Consensus 20 ~~~v~~Gd~V~~G~~l~~ie~~k----------~~~~i~Ap~~G~v~ 56 (81)
T 1gjx_A 20 AVEVNVGDTIAVDDTLITLETDK----------ATMDVPAEVAGVVK 56 (81)
T ss_dssp EECCCSSCBCCSSCCCEEEECSS----------CEEEECCCCSSBBC
T ss_pred EEEcCCCCEECCCCEEEEEEeCC----------cEEEEECCCCEEEE
Confidence 34556899999999999865443 25789999999975
No 34
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=53.44 E-value=3.3 Score=27.81 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=15.7
Q ss_pred eEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEE
Q 032363 77 VKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVK 122 (142)
Q Consensus 77 vK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 122 (142)
+.+-.|+.|.+|++|++---.+. ..+|.|+.+|+|.
T Consensus 39 ~~v~~Gd~V~~Gq~L~~ie~~k~----------~~~i~AP~~G~V~ 74 (94)
T 2jku_A 39 VSVKPGDAVAEGQEICVIEAMKM----------QNSMTAGKTGTVK 74 (94)
T ss_dssp ECCCTTCCCCTTCCCEEEEC--------------------------
T ss_pred EECCCCCEEcCCCEEEEEecccc----------cEEEECCCCEEEE
Confidence 44558999999999998654432 4679999999986
No 35
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.71 E-value=14 Score=25.09 Aligned_cols=41 Identities=12% Similarity=0.024 Sum_probs=31.2
Q ss_pred ccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 73 QRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 73 KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
+=.=|.+-.|+.|.+|++|+.---.| -.+.|-|+.+|+|.-
T Consensus 23 ~i~~~~v~~Gd~V~~G~~L~~ie~~K----------~~~~i~Ap~~G~v~~ 63 (98)
T 2dnc_A 23 NIVKWLKKEGEAVSAGDALCEIETDK----------AVVTLDASDDGILAK 63 (98)
T ss_dssp CEEEESSCTTCEECTTSEEEEEECSS----------CEEEEECSSCEEEEE
T ss_pred EEEEEEcCCCCEeCCCCEEEEEEccc----------ceeEEeCCCCEEEEE
Confidence 33446667899999999999865544 257899999999863
No 36
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=40.73 E-value=15 Score=25.47 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=31.5
Q ss_pred CccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEE
Q 032363 72 GQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKF 123 (142)
Q Consensus 72 ~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F 123 (142)
++=.-|.+-.|+.|.+|++|+.---.| -.+.|.|..+|+|.-
T Consensus 22 G~v~~~~v~~Gd~V~~G~~L~~iE~~K----------~~~~i~Ap~~G~V~~ 63 (108)
T 2dne_A 22 GTIARWEKKEGDKINEGDLIAEVETDK----------ATVGFESLEECYMAK 63 (108)
T ss_dssp EEEEECSSCTTCEECTTSEEEEEECSS----------CEEEEECSSSEEEEE
T ss_pred EEEEEEEcCCCCEecCCCEEEEEEcCc----------ceeEEeCCCCEEEEE
Confidence 333445667899999999999865544 257899999999873
No 37
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=38.81 E-value=12 Score=25.08 Aligned_cols=41 Identities=20% Similarity=0.059 Sum_probs=30.6
Q ss_pred CccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEE
Q 032363 72 GQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVK 122 (142)
Q Consensus 72 ~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 122 (142)
++=.-|.+-.|+.|.+|+.|+.---.|. ...|.|+.+|+|.
T Consensus 19 G~v~~~~v~~Gd~V~~G~~l~~ie~~K~----------~~~i~Ap~~G~V~ 59 (93)
T 1k8m_A 19 VTVKEWYVKEGDTVSQFDSICEVQSDKA----------SVTITSRYDGVIK 59 (93)
T ss_dssp EEEEEECCCTTCEECSSSCCEEEECSSC----------EEECCCSSCEEEE
T ss_pred EEEEEEEcCCcCEECCCCEEEEEEcCCc----------EEEEEcCCCEEEE
Confidence 3334466678999999999998654442 3678899999987
No 38
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=38.00 E-value=3.9 Score=26.28 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=28.3
Q ss_pred eeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEE
Q 032363 76 GVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVK 122 (142)
Q Consensus 76 GvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 122 (142)
-|.+-.|+.|.+|+.|+.---.|. .+.|.|+.+|+|.
T Consensus 21 ~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 57 (80)
T 1pmr_A 21 TWHKKPGDAVVRDEVLVEIETDKV----------VLEVPASADGILD 57 (80)
T ss_dssp BCCCCTTCCBSSSCCBCBCCSSSC----------CCCCBCCSBCCCC
T ss_pred EEECCCcCEECCCCEEEEEEccce----------EEEEECCCCEEEE
Confidence 355668999999999998655442 4778899999875
No 39
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=34.12 E-value=31 Score=27.71 Aligned_cols=39 Identities=8% Similarity=-0.134 Sum_probs=28.9
Q ss_pred CCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEE
Q 032363 81 GDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 125 (142)
Q Consensus 81 ~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k 125 (142)
-|+.|.+|++|.++.-. +.+|+. -..|.|..||.|-+..
T Consensus 274 ~g~~V~~G~~la~i~dp-~~~G~~-----~~~v~Ap~dGiv~~~~ 312 (332)
T 2qj8_A 274 VMDEVEQGDVVGVLHPM-GSLSAA-----SIDIRAQSKSTVFAIR 312 (332)
T ss_dssp TTCEECTTCEEEEEECT-TCSSSC-----CEEEECSSSEEEEEEE
T ss_pred CCCEeCCCCEEEEEECC-CCCCCe-----eEEEEeCCCeEEEEEe
Confidence 58889999999887643 224532 3579999999998865
No 40
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=32.33 E-value=29 Score=25.15 Aligned_cols=41 Identities=10% Similarity=0.005 Sum_probs=31.8
Q ss_pred CccceeEeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEE
Q 032363 72 GQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVK 122 (142)
Q Consensus 72 ~KrLGvK~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~ 122 (142)
++=.-|.+-.|+.|.+|++|+.---.|- .+.|.|..+|+|.
T Consensus 42 G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~----------~~~I~Ap~~G~V~ 82 (128)
T 1y8o_B 42 GTVQRWEKKVGEKLSEGDLLAEIETDKA----------TIGFEVQEEGYLA 82 (128)
T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEE
T ss_pred EEEEEEecCCCCEecCCCEEEEEEcCcc----------eeEEeCCCCeEEE
Confidence 3444567778999999999998765542 4788999999986
No 41
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=31.14 E-value=37 Score=34.20 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=26.4
Q ss_pred EeeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEE
Q 032363 78 KIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEK 125 (142)
Q Consensus 78 K~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k 125 (142)
.+-+||+|++|++|+. |.| -++.|.|-++|+|+|+.
T Consensus 1004 ~v~~g~~V~~g~~ia~-----wDp-------~~~piise~~G~v~f~d 1039 (1407)
T 3lu0_D 1004 AKGDGEQVAGGETVAN-----WDP-------HTMPVITEVSGFVRFTD 1039 (1407)
T ss_dssp SSCSSCEECTTCEEEE-----CCS-------SCCCEECSSCEEEEEES
T ss_pred EEcCCCEecCCCEEEE-----Eec-------CceeEEeccceEEEEee
Confidence 3446777777777763 555 35779999999999964
No 42
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=31.10 E-value=1.3e+02 Score=20.62 Aligned_cols=35 Identities=6% Similarity=0.197 Sum_probs=24.5
Q ss_pred eEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCC
Q 032363 83 QVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPD 129 (142)
Q Consensus 83 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~ 129 (142)
..+.+|++|++| |+ ....+|-+.+|.|+.....++
T Consensus 33 ~~~~~g~~l~~~-------G~-----~~~~~y~i~~G~v~~~~~~~~ 67 (194)
T 3dn7_A 33 KKVRKKETLLKT-------GE-----ICRINYFVVKGCLRLFFIDEK 67 (194)
T ss_dssp EEECTTCEEECT-------TS-----BCCEEEEEEESEEEEEEECTT
T ss_pred EEEcCCCEEECC-------CC-----eeeEEEEeecCeEEEEEECCC
Confidence 346677777765 32 236799999999999876443
No 43
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=28.93 E-value=23 Score=29.03 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=23.9
Q ss_pred ccceEEcC---CCeee-cccceEEEeeceEEEEEE
Q 032363 95 RGTKFHPG---KNVGL-GKDHTIFSLIDGLVKFEK 125 (142)
Q Consensus 95 RGtkfhPG---~NVg~-GrD~TLfAl~~G~V~F~k 125 (142)
+|..+|.| -.... .....++|..+|+|.+..
T Consensus 183 ~g~~~H~G~~giDi~~~~~gtpV~A~~~G~V~~~~ 217 (334)
T 3csq_A 183 NGSFSHKGTLCIDFVGKTEKYPYYAPCDCTCVWRG 217 (334)
T ss_dssp TCTTTCTTSCCEEECCSSSSCEEECSSSEEEEEEE
T ss_pred CCeecCCCCceeecccCCCCCeEEeccCEEEEEEe
Confidence 67889999 34444 456779999999999865
No 44
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=28.37 E-value=57 Score=26.60 Aligned_cols=42 Identities=12% Similarity=0.010 Sum_probs=28.4
Q ss_pred eeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEe
Q 032363 79 IFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 126 (142)
Q Consensus 79 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~ 126 (142)
+-.||.|.+|+.|.+..-. +.+|+ .-..++|..+|.|.+...
T Consensus 282 ~~~g~~V~~G~~La~i~d~-~~~g~-----~~~~v~Ap~dG~v~~~~~ 323 (354)
T 3cdx_A 282 HYVGEEVRTGETAGWIHFV-EDVDT-----APLELLYRRDGIVWFGAG 323 (354)
T ss_dssp CCTTCEECTTSEEEEEECT-TSSSC-----CCEEEECCSCEEEEEEEC
T ss_pred CCCCCEeCCCCEEEEEECC-CCCCC-----eeEEEEcCCCeEEEEEeC
Confidence 3468888888888875510 00132 346899999999988653
No 45
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=27.89 E-value=62 Score=26.28 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=28.7
Q ss_pred eeCCeEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEe
Q 032363 79 IFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 126 (142)
Q Consensus 79 ~~~Gq~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~ 126 (142)
+-.||.|++|++|.+..-.- ..|+- -+++.|+.||.|.+...
T Consensus 272 v~~Gd~V~~G~~la~I~dp~-~~g~~-----~~~v~Ap~dGiVi~~~~ 313 (331)
T 3na6_A 272 IDLGEPVQEGDLVARVWSPD-RTGEA-----PVEYRARRSGVLISRHF 313 (331)
T ss_dssp SCTTCEECTTCEEEEEECSS-CSSCC-----CEEEECSSSEEEEEEEC
T ss_pred CCCCCEEcCCCEEEEEEcCc-cCCCe-----eEEEEcCCCEEEEEEeC
Confidence 34788888888887754110 01221 47899999999988654
No 46
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=27.60 E-value=80 Score=25.29 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=23.0
Q ss_pred cceEEcCCCeeecccc--eEEEeeceEEEEEEe
Q 032363 96 GTKFHPGKNVGLGKDH--TIFSLIDGLVKFEKF 126 (142)
Q Consensus 96 GtkfhPG~NVg~GrD~--TLfAl~~G~V~F~k~ 126 (142)
..++|.|-.+...... .++|..+|+|.|...
T Consensus 77 ~~~~H~GIDi~a~~Gt~~pV~A~~~G~V~~~g~ 109 (245)
T 3tuf_B 77 TYSLSKGIDLAEKDGKDFDVSASLSGTVVKAEK 109 (245)
T ss_dssp EEEECCSEEEEETTCCCCEEECSSCEEEEEEEE
T ss_pred CccccccEEEeCCCCCcceEEeCcCeEEEEEEe
Confidence 4567777766664444 799999999999654
No 47
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=26.35 E-value=66 Score=25.66 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=20.7
Q ss_pred eEEcCCCeeecccc----eEEEeeceEEEEEEe
Q 032363 98 KFHPGKNVGLGKDH----TIFSLIDGLVKFEKF 126 (142)
Q Consensus 98 kfhPG~NVg~GrD~----TLfAl~~G~V~F~k~ 126 (142)
++|.|-........ .++|..+|+|.+...
T Consensus 123 ~~H~GiDi~a~~Gt~~~~pV~A~~~G~V~~~g~ 155 (252)
T 3nyy_A 123 RGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGW 155 (252)
T ss_dssp TTCCCEEEEESSCCTTCSEEECSSCEEEEEEEE
T ss_pred ccCccEEEecCCCCCCCceEEeccCEEEEEEEe
Confidence 46666555554444 899999999998654
No 48
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=25.90 E-value=74 Score=20.36 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=22.9
Q ss_pred eEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeC
Q 032363 83 QVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFG 127 (142)
Q Consensus 83 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~ 127 (142)
..+.+|++|++| |+. ...+|=+.+|.|+..+..
T Consensus 32 ~~~~~g~~i~~~-------g~~-----~~~~y~i~~G~v~~~~~~ 64 (142)
T 3mdp_A 32 KSFPTGSVIFKE-------NSK-----ADNLMLLLEGGVELFYSN 64 (142)
T ss_dssp EEECTTCEEECT-------TSB-----CCEEEEEEESCEEEECC-
T ss_pred EecCCCCEEEeC-------CCC-----CCcEEEEEeCEEEEEEEC
Confidence 346778888776 222 357999999999987643
No 49
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=24.54 E-value=36 Score=20.42 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=16.6
Q ss_pred CeEeecCcEEeecccceEEcC
Q 032363 82 DQVAKPGAIIVRQRGTKFHPG 102 (142)
Q Consensus 82 Gq~V~~G~IIvRQRGtkfhPG 102 (142)
++.|.+++.+++..|..|||.
T Consensus 18 ~~~i~~~e~~~~~~~~~~H~~ 38 (72)
T 3f6q_B 18 KGGFAPAEKIVNSNGELYHEQ 38 (72)
T ss_dssp CCBCCTTCEEEEETTEEEETT
T ss_pred CccccCCceEEEeCcCeeCcC
Confidence 456777777788899999986
No 50
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=23.61 E-value=1.9e+02 Score=20.05 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=23.6
Q ss_pred eEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCC
Q 032363 83 QVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPD 129 (142)
Q Consensus 83 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~ 129 (142)
..+.+|++|++| |+ ....+|-+.+|.|+..+..++
T Consensus 29 ~~~~~g~~i~~~-------G~-----~~~~~y~i~~G~v~~~~~~~~ 63 (220)
T 3dv8_A 29 QHVKKGTIIHNG-------NM-----DCTGLLLVKSGQLRTYILSDE 63 (220)
T ss_dssp EEECTTCEEEEG-------GG-----CCCEEEEEEESCEEEEEECTT
T ss_pred EEeCCCCEEECC-------CC-----CcceEEEEEeceEEEEEECCC
Confidence 345677777665 22 235689999999998876544
No 51
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=23.42 E-value=2e+02 Score=20.31 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=24.8
Q ss_pred eEeecCcEEeecccceEEcCCCeeecccceEEEeeceEEEEEEeCCC
Q 032363 83 QVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPD 129 (142)
Q Consensus 83 q~V~~G~IIvRQRGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~~p~ 129 (142)
..+.+|++|++| |+ ..+.+|-+.+|.|+.....++
T Consensus 37 ~~~~~g~~i~~~-------G~-----~~~~~y~i~~G~v~~~~~~~~ 71 (237)
T 3fx3_A 37 RSYDRGETLFLQ-------EE-----KAQAIHVVIDGWVKLFRMTPT 71 (237)
T ss_dssp EEECTTCEEECT-------TS-----CCCEEEEEEESEEEEEEECTT
T ss_pred EEECCCCEEEcC-------CC-----ccceEEEEEeeEEEEEEECCC
Confidence 346778888766 32 235799999999999876444
No 52
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=22.49 E-value=88 Score=26.04 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=27.2
Q ss_pred ccceEEcCCCeeecccceEEEeeceEEEEEEe
Q 032363 95 RGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKF 126 (142)
Q Consensus 95 RGtkfhPG~NVg~GrD~TLfAl~~G~V~F~k~ 126 (142)
++.++|.|-....-....++|..+|+|.+...
T Consensus 180 ~~~~~H~GIDiaa~~GtpV~A~adG~Vv~ag~ 211 (291)
T 1qwy_A 180 HGGGAHYGVDYAMPENSPVYSLTDGTVVQAGW 211 (291)
T ss_dssp TTSSEECSEEEECCTTCEEECSSSEEEEEEEE
T ss_pred CCCCCccceECCCCCCCeEEeCcCeEEEEEEE
Confidence 45689999888887888999999999999654
Done!