RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032363
         (142 letters)



>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 84

 Score =  129 bits (325), Expect = 8e-41
 Identities = 45/78 (57%), Positives = 56/78 (71%)

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
           AHKKG GS+KNGRDS  + LGVK FG +V K G I+VRQRGTKF  G+ VG+G+DHT+F+
Sbjct: 1   AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 60

Query: 116 LIDGLVKFEKFGPDRKQV 133
           L DG V F   G   + +
Sbjct: 61  LSDGKVVFINKGKGARFI 78


>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli
           [TaxId: 562]}
          Length = 84

 Score =  124 bits (314), Expect = 4e-39
 Identities = 50/79 (63%), Positives = 59/79 (74%), Gaps = 1/79 (1%)

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFS 115
           AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTKFH G NVG G+DHT+F+
Sbjct: 1   AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 60

Query: 116 LIDGLVKFEKFGP-DRKQV 133
             DG VKFE  GP +RK +
Sbjct: 61  KADGKVKFEVKGPKNRKFI 79


>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus
           [TaxId: 274]}
          Length = 66

 Score =  103 bits (259), Expect = 6e-31
 Identities = 33/60 (55%), Positives = 46/60 (76%)

Query: 74  RLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQV 133
           RLGVK +  QV + G I+VRQRGT+F PGKNVG+G+D T+F+L+DG+V+F+  G   + V
Sbjct: 1   RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRGRLGRYV 60


>d2pbka1 b.57.1.1 (A:3-230) KSHV protease {Kaposi's
          sarcoma-associated herpesvirus [TaxId: 37296]}
          Length = 228

 Score = 28.2 bits (63), Expect = 0.31
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
          P  VT  LP T PLP+TIE  H    
Sbjct: 25 PDQVTDYLPVTEPLPITIE--HLPET 48


>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
           [TaxId: 562]}
          Length = 295

 Score = 27.6 bits (60), Expect = 0.47
 Identities = 6/19 (31%), Positives = 9/19 (47%)

Query: 31  DFTVCPKSVTVSLPPTSPL 49
              + P ++   LPP  PL
Sbjct: 275 HIEILPAALRCRLPPDCPL 293


>d1o6ea_ b.57.1.1 (A:) Epstein-Barr virus protease {Human
          herpesvirus 4 [TaxId: 10376]}
          Length = 232

 Score = 27.4 bits (61), Expect = 0.55
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
          P +V   LP   PLPLT+E  H   A
Sbjct: 26 PLTVKSQLPLKKPLPLTVE--HLPDA 49


>d1at3a_ b.57.1.1 (A:) HSV-2 protease {Herpes simplex virus type 2
          [TaxId: 10310]}
          Length = 231

 Score = 27.4 bits (61), Expect = 0.56
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 30 GDFTVCPKSVTVSLPPTSPLPLTIESAHKKGA 61
          G+  + P +V  +LPP +PLP+ ++  H+   
Sbjct: 20 GELALDPDTVRAALPPENPLPINVD--HRARC 49


>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus
          [TaxId: 10335]}
          Length = 221

 Score = 27.0 bits (60), Expect = 0.77
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 36 PKSVTVSLPPTSPLPLTIESAHKKGA 61
          P+ V  +LPPTS +P+ I+  H+K  
Sbjct: 23 PEIVRSALPPTSKIPINID--HRKDC 46


>d2ffga1 d.317.1.1 (A:2-79) Hypothetical protein YkuJ {Bacillus
           subtilis [TaxId: 1423]}
          Length = 78

 Score = 24.7 bits (54), Expect = 2.0
 Identities = 7/18 (38%), Positives = 7/18 (38%)

Query: 123 FEKFGPDRKQVKYFAITN 140
           FE  G     VKYF    
Sbjct: 28  FEVNGEKICSVKYFEKNQ 45


>gi|147919682|ref|YP_686574.1|(2-194:196) 50S ribosomal protein
          L15e [uncultured methanogenic archaeon RC-I] 
          gi|121682947|sp|Q0W2Z5.1|RL15E_UNCMA RecName: Full=50S
          ribosomal protein L15e   gi|110621970|emb|CAJ37248.1|
          50S ribosomal protein L15E [uncultured methanogenic
          archaeon RC-I]  E=2e-63 s/c=1.26 id=63% cov=99%
          Length = 193

 Score = 24.2 bits (53), Expect = 6.6
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 6/28 (21%)

Query: 68 RDSRGQRLGVKIFGDQVAKPGAIIVRQR 95
          R  R + LG K      AK G I+ R  
Sbjct: 45 RLDRARALGYK------AKQGIIVARAH 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 478,588
Number of extensions: 20077
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 13
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)