BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032364
         (142 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q1DN93|ATG1_COCIM Serine/threonine-protein kinase ATG1 OS=Coccidioides immitis
           (strain RS) GN=ATG1 PE=3 SV=1
          Length = 969

 Score = 33.9 bits (76), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 11/86 (12%)

Query: 23  NFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTPTSL 82
           +F  +L S   FLR++ LI R  K          Q+    PP S + K L R  + P   
Sbjct: 152 HFLKQLASALQFLRTKDLIHRDLK---------PQNLLLNPPPSTYAKGLLR--IVPYKT 200

Query: 83  LEDSSRTDSGLDDKTKLKEEDIGFSR 108
            EDS     G++    LK  D GF+R
Sbjct: 201 REDSFTPLVGVESLPMLKIADFGFAR 226


>sp|Q63369|NFKB1_RAT Nuclear factor NF-kappa-B p105 subunit (Fragment) OS=Rattus
           norvegicus GN=Nfkb1 PE=2 SV=1
          Length = 522

 Score = 31.6 bits (70), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 16/52 (30%)

Query: 55  DKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGF 106
           +K++ GE P  SLFM   K   + P S +ED              KEED+GF
Sbjct: 8   EKETQGEGP--SLFMASTKTEAIAPASTMED--------------KEEDVGF 43


>sp|P26404|RFBM_SALTY Mannose-1-phosphate guanylyltransferase RfbM OS=Salmonella
           typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
           GN=rfbM PE=1 SV=1
          Length = 479

 Score = 30.8 bits (68), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 63  PPESLFMKELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNT 111
           PP ++    L+  GMTP  L+E  S T  G DD  +L E+  GFS+  T
Sbjct: 430 PPNTI--HALENPGMTPLKLIEIQSGTYLGEDDIIRL-EQRSGFSKEWT 475


>sp|Q05202|FCUA_YEREN Ferrichrome receptor FcuA OS=Yersinia enterocolitica GN=fcuA PE=1
           SV=1
          Length = 758

 Score = 30.4 bits (67), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 71  ELKRRGMTPTSLLE----DSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRER 126
           E KR G TP + +      +S+    LD   +  ++D    R N +  E + ++ DQ+ER
Sbjct: 214 EPKRAGDTPLTRVTVDYGSASQVGGALDVGRRYGDDDQFGVRVNVLHREGESAIHDQKER 273

Query: 127 SMALNSEGLEVAGRR 141
           + A+ S GL+  G R
Sbjct: 274 TTAV-STGLDYRGDR 287


>sp|O70458|OSMR_MOUSE Oncostatin-M-specific receptor subunit beta OS=Mus musculus GN=Osmr
           PE=1 SV=1
          Length = 971

 Score = 30.0 bits (66), Expect = 4.4,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 54  GDKQSNGEEPPESLFMKELKRRGMTPTSLLEDSSRTDSGL 93
           GDK +   EPP  +   E KR+ + P SL   S + D+ L
Sbjct: 921 GDKDTLATEPPVPVHGSEYKRQMVVPGSLASPSLKEDNSL 960


>sp|Q83F28|MURE_COXBU UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
           ligase OS=Coxiella burnetii (strain RSA 493 / Nine Mile
           phase I) GN=murE PE=3 SV=1
          Length = 489

 Score = 30.0 bits (66), Expect = 4.7,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 17  VSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRG 76
           + +  ++ P  L+     LR  C  R      CG   GD+   G+ P     M  +  + 
Sbjct: 352 IIVDYAHTPDALEKALTALREHCQGRLICVFGCG---GDR-DRGKRPQ----MAAVAEQH 403

Query: 77  MTPTSLLEDSSRTDSGLDDKTKLKEEDIGFSRRNTVSTEIDKSLADQRERSMALNSEGLE 136
                L  D+ RT+S L   T +++   GF  +N V  ++D++ A +    MA  ++ + 
Sbjct: 404 ADQIILTNDNPRTESPL---TIIQDIQAGFKNKNAVLVKLDRAEAIRYAVQMAAVNDIVL 460

Query: 137 VAGR 140
           +AG+
Sbjct: 461 IAGK 464


>sp|P50845|KDGK_BACSU 2-dehydro-3-deoxygluconokinase OS=Bacillus subtilis (strain 168)
           GN=kdgK PE=2 SV=1
          Length = 324

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 16  SVSISQSNFPGKLDSGKVFLRSRCLIRRKFKVCCGVQE-----GDKQSNGEEPPESLFMK 70
           S+++  +N  G L     F  S+ L   +  V CG+       G     G +   +  ++
Sbjct: 11  SMAMFYANEYGGLHEVSTF--SKGLAGAESNVACGLARLGFRMGWMSKVGNDQLGTFILQ 68

Query: 71  ELKRRGMTPTSLLEDSSRTDSGLDDKTKLKEED--IGFSRRNTVSTEI 116
           ELK+ G+  + ++       +GL  K+K+KE D  + + R+N+ ++ +
Sbjct: 69  ELKKEGVDVSRVIRSQDENPTGLLLKSKVKEGDPQVTYYRKNSAASTL 116


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.129    0.350 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,522,293
Number of Sequences: 539616
Number of extensions: 1877971
Number of successful extensions: 3805
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 3781
Number of HSP's gapped (non-prelim): 49
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)