Query 032364
Match_columns 142
No_of_seqs 24 out of 26
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 21:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fyr_A Sporulation inhibitor S 28.0 18 0.00062 23.2 0.8 15 66-80 29-43 (48)
2 3abi_A Putative uncharacterize 21.0 46 0.0016 26.4 2.1 19 60-78 334-361 (365)
3 2b7e_A PRE-mRNA processing pro 11.5 1.1E+02 0.0037 20.1 1.7 23 62-84 3-25 (59)
4 2z2v_A Hypothetical protein PH 11.5 92 0.0031 25.4 1.6 13 66-78 349-361 (365)
5 4hv0_A AVTR; ribbon-helix-heli 11.0 1.1E+02 0.0038 22.5 1.7 28 43-79 61-88 (106)
6 1c1y_B Proto-onkogene serine/t 10.5 1.1E+02 0.0036 21.2 1.4 19 64-82 24-42 (77)
7 3ny5_A Serine/threonine-protei 9.2 1.2E+02 0.0042 21.8 1.4 20 64-83 36-55 (96)
8 2end_A Endonuclease V; 1.45A { 9.2 1.6E+02 0.0056 22.4 2.1 16 67-82 73-88 (138)
9 1wxm_A A-RAF proto-oncogene se 8.7 1.6E+02 0.0055 20.7 1.8 19 64-82 30-48 (86)
10 2jg6_A DNA-3-methyladenine gly 8.7 1.1E+02 0.0037 24.1 1.0 16 63-78 140-155 (186)
No 1
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=27.96 E-value=18 Score=23.21 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=10.7
Q ss_pred hhhHHHHHHcCCCCC
Q 032364 66 SLFMKELKRRGMTPT 80 (142)
Q Consensus 66 SlFmKELkRRGmapt 80 (142)
.|..+|+.|||+.|-
T Consensus 29 ~LL~~Ei~RR~L~~~ 43 (48)
T 3fyr_A 29 ELIENEIKRRSLGHI 43 (48)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCccc
Confidence 577899999999764
No 2
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=21.03 E-value=46 Score=26.44 Aligned_cols=19 Identities=53% Similarity=0.938 Sum_probs=14.9
Q ss_pred CCCCchhh---------hHHHHHHcCCC
Q 032364 60 GEEPPESL---------FMKELKRRGMT 78 (142)
Q Consensus 60 gee~pESl---------FmKELkRRGma 78 (142)
|=-+||.+ |++||+.+|+.
T Consensus 334 GV~~PE~l~~~~~~~~~~l~~L~~~GI~ 361 (365)
T 3abi_A 334 GVIPPEILGMREDTFRRIIDELKERGIS 361 (365)
T ss_dssp EEECTHHHHHSHHHHHHHHHHHHHTTCC
T ss_pred CEEChhhcccchhhHHHHHHHHHHCCCe
Confidence 55577765 89999999984
No 3
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=11.54 E-value=1.1e+02 Score=20.06 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.4
Q ss_pred CCchhhhHHHHHHcCCCCCCccc
Q 032364 62 EPPESLFMKELKRRGMTPTSLLE 84 (142)
Q Consensus 62 e~pESlFmKELkRRGmaptS~~~ 84 (142)
|..|..|++=|++.+..|+-.-+
T Consensus 3 eEae~aF~~lL~~~~V~s~wswe 25 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFS 25 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHH
Confidence 45688999999999999987763
No 4
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=11.50 E-value=92 Score=25.36 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=11.2
Q ss_pred hhhHHHHHHcCCC
Q 032364 66 SLFMKELKRRGMT 78 (142)
Q Consensus 66 SlFmKELkRRGma 78 (142)
.-||+||+.+|+.
T Consensus 349 ~~~l~~L~~~Gi~ 361 (365)
T 2z2v_A 349 RRIIDELKERGIS 361 (365)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCc
Confidence 4699999999983
No 5
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=11.00 E-value=1.1e+02 Score=22.55 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=18.4
Q ss_pred eeeEEEeeeccCCCCCCCCCCchhhhHHHHHHcCCCC
Q 032364 43 RKFKVCCGVQEGDKQSNGEEPPESLFMKELKRRGMTP 79 (142)
Q Consensus 43 ~~lrV~c~~~eg~~~~~gee~pESlFmKELkRRGmap 79 (142)
.-+|+.|--.- .-|-+.--|||+|||+-
T Consensus 61 ~y~r~~~k~~k---------~ne~~ik~elkkrg~s~ 88 (106)
T 4hv0_A 61 KYYRINCKLEK---------RNEILVKLELKKRGTTL 88 (106)
T ss_dssp EEEEECCCCCH---------HHHHHHHHHHHHHTCCH
T ss_pred EEEEEEEEeec---------cchhhHHHHHHHcCCcH
Confidence 34577775321 23567778999999963
No 6
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=10.46 E-value=1.1e+02 Score=21.21 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=15.1
Q ss_pred chhhhHHHHHHcCCCCCCc
Q 032364 64 PESLFMKELKRRGMTPTSL 82 (142)
Q Consensus 64 pESlFmKELkRRGmaptS~ 82 (142)
.-+..+|=||+||++|.--
T Consensus 24 lrdaL~KaLk~R~L~pe~C 42 (77)
T 1c1y_B 24 LHDCLMKALKVRGLQPECC 42 (77)
T ss_dssp HHHHHHHHHHTTTCCGGGE
T ss_pred HHHHHHHHHHHcCCCHHHe
Confidence 3456899999999988654
No 7
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=9.22 E-value=1.2e+02 Score=21.76 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.7
Q ss_pred chhhhHHHHHHcCCCCCCcc
Q 032364 64 PESLFMKELKRRGMTPTSLL 83 (142)
Q Consensus 64 pESlFmKELkRRGmaptS~~ 83 (142)
.-+..+|=||+||++|.--.
T Consensus 36 lrdaL~KaLk~R~L~pe~C~ 55 (96)
T 3ny5_A 36 VRDSLKKALMMRGLIPECCA 55 (96)
T ss_dssp HHHHHHHHHHTTTCCGGGEE
T ss_pred HHHHHHHHHHHcCCChHHeE
Confidence 44678999999999886543
No 8
>2end_A Endonuclease V; 1.45A {Enterobacteria phage T4} SCOP: a.18.1.1 PDB: 1enj_A 1eni_A 1enk_A 2fcc_A* 1vas_A*
Probab=9.17 E-value=1.6e+02 Score=22.42 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=12.8
Q ss_pred hhHHHHHHcCCCCCCc
Q 032364 67 LFMKELKRRGMTPTSL 82 (142)
Q Consensus 67 lFmKELkRRGmaptS~ 82 (142)
...+||.+||+.+.+.
T Consensus 73 ~L~~Em~~RGy~~~~~ 88 (138)
T 2end_A 73 ELIAECLKRGFNIKDT 88 (138)
T ss_dssp HHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHcCCCCCCc
Confidence 3578999999987763
No 9
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=8.72 E-value=1.6e+02 Score=20.72 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.3
Q ss_pred chhhhHHHHHHcCCCCCCc
Q 032364 64 PESLFMKELKRRGMTPTSL 82 (142)
Q Consensus 64 pESlFmKELkRRGmaptS~ 82 (142)
.-...+|=||+||++|.--
T Consensus 30 lrdaL~KaLk~R~L~pe~C 48 (86)
T 1wxm_A 30 VYDSLDKALKVRGLNQDCC 48 (86)
T ss_dssp SHHHHHHHHHTTTCCSSSE
T ss_pred HHHHHHHHHHHcCCCHHHe
Confidence 4467899999999998654
No 10
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=8.69 E-value=1.1e+02 Score=24.10 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=12.6
Q ss_pred CchhhhHHHHHHcCCC
Q 032364 63 PPESLFMKELKRRGMT 78 (142)
Q Consensus 63 ~pESlFmKELkRRGma 78 (142)
+.+....|+||+||..
T Consensus 140 ~~S~~lsKdLKkrGFk 155 (186)
T 2jg6_A 140 DTATQLSKDLKQYGFK 155 (186)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHCCCe
Confidence 3345789999999984
Done!