Query 032364
Match_columns 142
No_of_seqs 24 out of 26
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 21:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032364.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032364hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2enda_ a.18.1.1 (A:) T4 endon 25.9 14 0.001 26.5 1.7 15 67-81 72-86 (137)
2 d1pv0a_ a.2.12.1 (A:) Sporulat 21.8 21 0.0015 21.4 1.8 14 66-79 27-40 (46)
3 d1d6za3 d.17.2.1 (A:186-300) C 14.1 34 0.0024 22.9 1.5 18 66-83 18-35 (115)
4 d1rvka1 c.1.11.2 (A:127-381) H 13.8 1.1E+02 0.0077 21.1 4.3 38 42-79 2-41 (255)
5 d2oqea3 d.17.2.1 (A:116-236) C 12.6 38 0.0028 22.7 1.4 16 67-82 18-33 (121)
6 d1w6ga3 d.17.2.1 (A:97-211) Co 12.0 39 0.0028 22.5 1.3 17 66-82 20-36 (115)
7 d1w2za3 d.17.2.1 (A:99-206) Co 11.9 39 0.0029 22.3 1.3 18 66-83 21-38 (108)
8 d2hh8a1 d.358.1.1 (A:7-133) Hy 11.1 45 0.0033 23.0 1.5 14 66-79 20-33 (127)
9 d1e3pa2 b.40.4.5 (A:656-717) S 10.7 34 0.0025 20.1 0.5 9 133-141 17-25 (62)
10 d2b7ea1 a.159.2.1 (A:4-59) Pre 9.8 86 0.0063 18.8 2.3 20 65-84 3-22 (56)
No 1
>d2enda_ a.18.1.1 (A:) T4 endonuclease V {Bacteriophage T4 [TaxId: 10665]}
Probab=25.95 E-value=14 Score=26.46 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=12.7
Q ss_pred hhHHHHHHcCCCCCC
Q 032364 67 LFMKELKRRGMTPTS 81 (142)
Q Consensus 67 lFmKELkRRGmaptS 81 (142)
.-++||++||+.|.-
T Consensus 72 ~L~~Em~~RGy~~~~ 86 (137)
T d2enda_ 72 ELIAECLKRGFNIKD 86 (137)
T ss_dssp HHHHHHHHTTCCCSC
T ss_pred HHHHHHHHcCCCCCh
Confidence 468999999998874
No 2
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis [TaxId: 1423]}
Probab=21.84 E-value=21 Score=21.43 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.9
Q ss_pred hhhHHHHHHcCCCC
Q 032364 66 SLFMKELKRRGMTP 79 (142)
Q Consensus 66 SlFmKELkRRGmap 79 (142)
.|+++|+.||.++-
T Consensus 27 ~Lie~Ei~RRsL~h 40 (46)
T d1pv0a_ 27 ELIENEIKRRSLGH 40 (46)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhhhh
Confidence 58999999999854
No 3
>d1d6za3 d.17.2.1 (A:186-300) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=14.12 E-value=34 Score=22.88 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.2
Q ss_pred hhhHHHHHHcCCCCCCcc
Q 032364 66 SLFMKELKRRGMTPTSLL 83 (142)
Q Consensus 66 SlFmKELkRRGmaptS~~ 83 (142)
..|.+.|++||++..+++
T Consensus 18 p~~~aal~kRGi~d~~~V 35 (115)
T d1d6za3 18 EEFAAAVKKRGITDAKKV 35 (115)
T ss_dssp HHHHHHHHHTTCSCGGGE
T ss_pred HHHHHHHHHcCCCCcceE
Confidence 358999999999865554
No 4
>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=13.82 E-value=1.1e+02 Score=21.11 Aligned_cols=38 Identities=29% Similarity=0.455 Sum_probs=27.8
Q ss_pred eeeeEEEeeeccCCCCCCCCCCchhh--hHHHHHHcCCCC
Q 032364 42 RRKFKVCCGVQEGDKQSNGEEPPESL--FMKELKRRGMTP 79 (142)
Q Consensus 42 ~~~lrV~c~~~eg~~~~~gee~pESl--FmKELkRRGmap 79 (142)
|-+++|.++...++.-..+...||.. .+|+++.+|.+-
T Consensus 2 Rd~i~~Yas~~~~~~~~~~~~tpe~~~~~a~~~~~~Gf~~ 41 (255)
T d1rvka1 2 RDKVLAYGSIMCGDELEGGLATPEDYGRFAETLVKRGYKG 41 (255)
T ss_dssp CSEEEEEEEECCCCCCTTTTSSHHHHHHHHHHHHHHTCSE
T ss_pred CCeeEeceeecCCCccccCCCCHHHHHHHHHHHHHcCCCE
Confidence 45788988877776555666677754 789999999743
No 5
>d2oqea3 d.17.2.1 (A:116-236) Copper amine oxidase, domains 1 and 2 {Yeast (Hansenula polymorpha) [TaxId: 4905]}
Probab=12.65 E-value=38 Score=22.73 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=13.1
Q ss_pred hhHHHHHHcCCCCCCc
Q 032364 67 LFMKELKRRGMTPTSL 82 (142)
Q Consensus 67 lFmKELkRRGmaptS~ 82 (142)
.|.++|++||++++-+
T Consensus 18 ~v~~al~~rGi~~~d~ 33 (121)
T d2oqea3 18 AVIEQCVLSGIPANEM 33 (121)
T ss_dssp HHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHcCCCcccc
Confidence 5889999999977643
No 6
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]}
Probab=12.03 E-value=39 Score=22.54 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=13.3
Q ss_pred hhhHHHHHHcCCCCCCc
Q 032364 66 SLFMKELKRRGMTPTSL 82 (142)
Q Consensus 66 SlFmKELkRRGmaptS~ 82 (142)
..|.+.|++||+++...
T Consensus 20 p~~~~al~kRGid~~~V 36 (115)
T d1w6ga3 20 ERWLKALAARNLDVSKV 36 (115)
T ss_dssp HHHHHHHHHTTCCGGGE
T ss_pred HHHHHHHHHcCCCHHHE
Confidence 36999999999965544
No 7
>d1w2za3 d.17.2.1 (A:99-206) Copper amine oxidase, domains 1 and 2 {Pea seedling (Pisum sativum) [TaxId: 3888]}
Probab=11.87 E-value=39 Score=22.27 Aligned_cols=18 Identities=22% Similarity=0.641 Sum_probs=13.9
Q ss_pred hhhHHHHHHcCCCCCCcc
Q 032364 66 SLFMKELKRRGMTPTSLL 83 (142)
Q Consensus 66 SlFmKELkRRGmaptS~~ 83 (142)
-.|.+.|+|||+++..+.
T Consensus 21 p~~~~al~~RGId~~~V~ 38 (108)
T d1w2za3 21 PPFIDSVKKRGLNLSEIV 38 (108)
T ss_dssp HHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHcCCChhhEE
Confidence 369999999999655443
No 8
>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia coli [TaxId: 562]}
Probab=11.14 E-value=45 Score=22.95 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=12.0
Q ss_pred hhhHHHHHHcCCCC
Q 032364 66 SLFMKELKRRGMTP 79 (142)
Q Consensus 66 SlFmKELkRRGmap 79 (142)
..|++|||+-|++-
T Consensus 20 p~~~~~lk~~gV~~ 33 (127)
T d2hh8a1 20 QWFYSELKRHNVSH 33 (127)
T ss_dssp HHHHHHHHHHCSSE
T ss_pred HHHHHHHHHhCcee
Confidence 47999999999954
No 9
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Streptomyces antibioticus [TaxId: 1890]}
Probab=10.66 E-value=34 Score=20.06 Aligned_cols=9 Identities=11% Similarity=-0.145 Sum_probs=4.4
Q ss_pred ccccCcCCC
Q 032364 133 EGLEVAGRR 141 (142)
Q Consensus 133 EGLEGLiPR 141 (142)
.|++||||.
T Consensus 17 ~g~~Glihi 25 (62)
T d1e3pa2 17 PGKDGLLHI 25 (62)
T ss_dssp ---CCCCC-
T ss_pred CCceEEEEH
Confidence 488999884
No 10
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.85 E-value=86 Score=18.80 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.4
Q ss_pred hhhhHHHHHHcCCCCCCccc
Q 032364 65 ESLFMKELKRRGMTPTSLLE 84 (142)
Q Consensus 65 ESlFmKELkRRGmaptS~~~ 84 (142)
|..|++=|++++..|++.-+
T Consensus 3 ~~aF~~lL~e~~V~s~wtWe 22 (56)
T d2b7ea1 3 EKEFITMLKENQVDSTWSFS 22 (56)
T ss_dssp HHHHHHHHHHTTCCSSCCHH
T ss_pred HHHHHHHHHHcCCCCCCcHH
Confidence 56899999999999998863
Done!