BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032365
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R79|A Chain A, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
pdb|3R79|B Chain B, Crystal Structure Of An Uncharactertized Protein From
Agrobacterium Tumefaciens
Length = 244
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 69/136 (50%), Gaps = 15/136 (11%)
Query: 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR--LR 58
+VE + EKIA L + + GR L+ VQVNT E K+GIDP + V R L+
Sbjct: 100 VVESIDREKIARALSEECARQGRS-LRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELK 158
Query: 59 CPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE 118
P GL I P P LL A C G+ + LS G SGDFE A+E
Sbjct: 159 LP---VEGLXCI--PPAEENPGPHFALLAKLAGQC---GLEK----LSXGXSGDFETAVE 206
Query: 119 MGSTSVRIGSTIFGPR 134
G+TSVR+GS IFG R
Sbjct: 207 FGATSVRVGSAIFGSR 222
>pdb|3CPG|A Chain A, Crystal Structure Of An Unknown Protein From
Bifidobacterium Adolescentis
Length = 282
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 28 VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIG--MPDYTSTPENFRTL 85
VL++VN SGEESKSG DP+ + I + + +E GL TIG + D T F L
Sbjct: 163 VLLEVNESGEESKSGCDPAHAIRIAQKIGT-LDGIELQGLXTIGAHVHDETVIRRGFSHL 221
Query: 86 LNCRAEVCKALGMAEDQC-ELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 136
R + + D+C ELS G +GD E AI GST VR+G+ IFG R +
Sbjct: 222 RKTRDLILASGEPGTDRCRELSXGXTGDXELAIAEGSTIVRVGTAIFGERAF 273
>pdb|1W8G|A Chain A, Crystal Structure Of E. Coli K-12 Yggs
Length = 234
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRT 84
PL VL+Q+N S E SKSGI + + V P L GLM I P+ E R
Sbjct: 122 PLNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLMAIPAPE----SEYVRQ 176
Query: 85 LLNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 139
R G+ LS+GMS D E AI GST VRIG+ IFG R+Y+KK
Sbjct: 177 FEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSKK 234
>pdb|1B54|A Chain A, Crystal Structure Of A Yeast Hypothetical Protein-A
Structure From Bnl's Human Proteome Project
Length = 257
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 9/116 (7%)
Query: 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRL--RCPNLEFSGLMTIGMPD--YTSTPE 80
P+ VQ+NTS E+ KSG++ + + V L C ++ +GLMTIG + + + E
Sbjct: 136 PILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKE 195
Query: 81 N--FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 134
N F TL+ + ++ G + +LSMGMS DF +AI G+ VRIG+ IFG R
Sbjct: 196 NRDFATLVEWKKKIDAKFGTS---LKLSMGMSADFREAIRQGTAEVRIGTDIFGAR 248
>pdb|3SY1|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or70
Length = 245
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRT 84
PL VL+Q+N S E SKSGI + + V P L GL I P+ E R
Sbjct: 123 PLNVLIQINISDENSKSGIQLAELDELAAAV-AELPRLRLRGLSAIPAPE----SEYVRQ 177
Query: 85 LLNCRAEVCKALGMAEDQCE---LSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKK 139
R G+ L++G S D E AI GST V IG+ IFG R+Y+KK
Sbjct: 178 FEVARQMAVAFAGLKTRYPHIDTLALGQSDDMEAAIAAGSTMVAIGTAIFGARDYSKK 235
>pdb|1CT5|A Chain A, Crystal Structure Of Yeast Hypothetical Protein
Ybl036c-Selenomet Crystal
Length = 256
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 9/116 (7%)
Query: 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRL--RCPNLEFSGLMTIGMPD--YTSTPE 80
P+ VQ+NTS E+ KSG++ + + V L C ++ +GL TIG + + + E
Sbjct: 135 PILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLXTIGSWNVSHEDSKE 194
Query: 81 N--FRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPR 134
N F TL+ + ++ G + +LS G S DF +AI G+ VRIG+ IFG R
Sbjct: 195 NRDFATLVEWKKKIDAKFGTS---LKLSXGXSADFREAIRQGTAEVRIGTDIFGAR 247
>pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|B Chain B, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|C Chain C, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|D Chain D, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|E Chain E, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
pdb|1TQJ|F Chain F, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase
From Synechocystis To 1.6 Angstrom Resolution
Length = 230
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 27 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI--GMPDYTSTPENFRT 84
+ L Q+ G+++ + ++PS+ L +E+V C + +M++ G + PE
Sbjct: 103 RTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVC---DLILIMSVNPGFGGQSFIPEVLPK 159
Query: 85 LLNCRAEVCKALGMAEDQCELSMGMS-GDFEQAIEMGSTSVRIGSTIFGPREYAK 138
+ R ++C G+ + E+ G+ + Q +E G+ ++ GS +F YA+
Sbjct: 160 IRALR-QMCDERGL-DPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAE 212
>pdb|1URJ|A Chain A, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
pdb|1URJ|B Chain B, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
Length = 1136
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 71 GMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGST 129
G DYT P + + A +C+ LG+ D+ L + ++ F++A+ + +T + +G +
Sbjct: 124 GFSDYTPRPGDLKHETTGEA-LCERLGLDPDRALLYLVVTEGFKEAVCINNTFLHLGGS 181
>pdb|3DYJ|A Chain A, Crystal Structure A Talin Rod Fragment
pdb|3DYJ|B Chain B, Crystal Structure A Talin Rod Fragment
Length = 332
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 27 KVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLL 86
KVLVQ N +G + K S + + R ++ G ++G D PE L+
Sbjct: 70 KVLVQ-NAAGSQEKLAQAAQSSVATIT----RLADVVKLGAASLGAED----PETQVVLI 120
Query: 87 NCRAEVCKALGMAEDQCELSMGMSGD 112
N +V KALG + + G GD
Sbjct: 121 NAVKDVAKALGDLISATKAAAGKVGD 146
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 284
Query: 86 LNC 88
L+C
Sbjct: 285 LDC 287
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 110 SGDFEQAIEMGSTSVRIGSTIFGPRE 135
SGD +A+ +G++SV IGS + G E
Sbjct: 258 SGDIGKALAVGASSVMIGSILAGTEE 283
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 284 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 329
Query: 86 LNC 88
L+C
Sbjct: 330 LDC 332
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 289 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 334
Query: 86 LNC 88
L+C
Sbjct: 335 LDC 337
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 291 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 336
Query: 86 LNC 88
L+C
Sbjct: 337 LDC 339
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 282 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 327
Query: 86 LNC 88
L+C
Sbjct: 328 LDC 330
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 110 SGDFEQAIEMGSTSVRIGSTIFGPRE 135
SGD +A+ +G++SV IGS + G E
Sbjct: 219 SGDIGKALAVGASSVMIGSILAGTEE 244
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 230 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 275
Query: 86 LNC 88
L+C
Sbjct: 276 LDC 278
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 230 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 275
Query: 86 LNC 88
L+C
Sbjct: 276 LDC 278
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 230 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 275
Query: 86 LNC 88
L+C
Sbjct: 276 LDC 278
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 241 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 286
Query: 86 LNC 88
L+C
Sbjct: 287 LDC 289
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 235 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 280
Query: 86 LNC 88
L+C
Sbjct: 281 LDC 283
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 276 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 321
Query: 86 LNC 88
L+C
Sbjct: 322 LDC 324
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 230 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 275
Query: 86 LNC 88
L+C
Sbjct: 276 LDC 278
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 284
Query: 86 LNC 88
L+C
Sbjct: 285 LDC 287
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 284
Query: 86 LNC 88
L+C
Sbjct: 285 LDC 287
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 284
Query: 86 LNC 88
L+C
Sbjct: 285 LDC 287
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 28 VLVQVNTSGEESKSG--IDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTL 85
+L ++ + G G ID C + E R+R P DYT TPE ++T+
Sbjct: 239 LLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAP-------------DYT-TPEMYQTM 284
Query: 86 LNC 88
L+C
Sbjct: 285 LDC 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,100,643
Number of Sequences: 62578
Number of extensions: 152255
Number of successful extensions: 317
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 302
Number of HSP's gapped (non-prelim): 29
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 46 (22.3 bits)