Query 032365
Match_columns 142
No_of_seqs 127 out of 1123
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 21:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sy1_A UPF0001 protein YGGS; e 100.0 1E-36 3.5E-41 235.5 11.2 133 1-138 100-234 (245)
2 3r79_A Uncharacterized protein 100.0 5.5E-35 1.9E-39 225.7 12.1 127 1-138 100-226 (244)
3 1ct5_A Protein (yeast hypothet 100.0 4E-34 1.4E-38 222.1 14.4 137 1-141 109-254 (256)
4 3cpg_A Uncharacterized protein 100.0 1.1E-29 3.6E-34 199.2 14.2 135 1-137 137-274 (282)
5 3gwq_A D-serine deaminase; str 99.9 1.6E-27 5.6E-32 196.3 12.0 129 2-135 144-286 (426)
6 1vfs_A Alanine racemase; TIM-b 99.9 6.4E-25 2.2E-29 178.3 15.0 130 1-137 100-236 (386)
7 1xfc_A Alanine racemase; alpha 99.9 5.7E-25 1.9E-29 178.3 14.4 130 1-137 104-240 (384)
8 4ecl_A Serine racemase, vantg; 99.9 6.4E-25 2.2E-29 178.3 11.6 126 1-138 100-232 (374)
9 3llx_A Predicted amino acid al 99.9 1E-24 3.5E-29 176.6 9.7 125 2-137 110-246 (376)
10 2vd8_A Alanine racemase; pyrid 99.9 3E-24 1E-28 174.6 11.9 127 2-136 106-237 (391)
11 3e5p_A Alanine racemase; ALR, 99.9 2.2E-24 7.4E-29 175.1 7.1 127 1-137 102-234 (371)
12 4a3q_A Alanine racemase 1; iso 99.9 6.1E-24 2.1E-28 173.0 9.5 126 1-137 101-231 (382)
13 2dy3_A Alanine racemase; alpha 99.9 1.4E-23 4.7E-28 168.7 10.8 127 1-137 96-226 (361)
14 1bd0_A Alanine racemase; isome 99.9 3.1E-23 1.1E-27 168.7 12.3 124 2-136 102-230 (388)
15 3mub_A Alanine racemase; alpha 99.9 3.5E-23 1.2E-27 167.8 10.2 124 2-137 102-230 (367)
16 3kw3_A Alanine racemase; niaid 99.9 1.2E-23 4.1E-28 171.0 7.3 125 1-137 114-242 (376)
17 1rcq_A Catabolic alanine racem 99.9 1.9E-22 6.6E-27 161.9 12.0 121 2-137 96-220 (357)
18 2rjg_A Alanine racemase; alpha 99.9 1.4E-22 4.8E-27 164.4 11.3 121 2-137 116-241 (379)
19 3anu_A D-serine dehydratase; P 99.9 1.3E-22 4.5E-27 163.5 8.5 127 2-136 108-250 (376)
20 3co8_A Alanine racemase; prote 99.9 1.5E-21 5.2E-26 158.2 11.9 124 1-137 102-234 (380)
21 3hur_A Alanine racemase; struc 99.8 7.8E-22 2.7E-26 161.3 6.4 123 1-137 103-236 (395)
22 2p3e_A Diaminopimelate decarbo 99.8 5.7E-20 2E-24 150.1 6.7 129 2-135 126-276 (420)
23 2j66_A BTRK, decarboxylase; bu 99.6 9.7E-16 3.3E-20 125.4 11.3 105 2-110 110-228 (428)
24 2qgh_A Diaminopimelate decarbo 99.6 1.2E-15 4.3E-20 124.9 11.1 104 2-110 127-245 (425)
25 1twi_A Diaminopimelate decarbo 99.6 1.6E-15 5.6E-20 124.3 10.7 105 2-111 130-251 (434)
26 3vab_A Diaminopimelate decarbo 99.6 2.1E-14 7.2E-19 118.6 11.8 103 2-109 143-260 (443)
27 3n2b_A Diaminopimelate decarbo 99.6 1.6E-14 5.5E-19 119.2 10.0 104 2-110 146-264 (441)
28 2o0t_A Diaminopimelate decarbo 99.5 3.2E-14 1.1E-18 118.0 10.1 105 2-110 135-260 (467)
29 2plj_A Lysine/ornithine decarb 99.5 3.4E-14 1.2E-18 116.4 5.4 121 3-133 148-283 (419)
30 2nva_A Arginine decarboxylase, 99.4 1.3E-12 4.3E-17 105.1 10.2 119 3-131 110-241 (372)
31 3btn_A Antizyme inhibitor 1; T 99.4 6E-13 2E-17 109.9 6.9 99 2-110 130-237 (448)
32 1f3t_A ODC, ornithine decarbox 99.3 7.6E-12 2.6E-16 102.5 10.7 120 2-131 130-262 (425)
33 2oo0_A ODC, ornithine decarbox 99.3 1.3E-11 4.5E-16 102.6 11.9 99 2-110 140-247 (471)
34 7odc_A Protein (ornithine deca 99.3 2.3E-11 7.8E-16 99.9 10.8 97 3-109 131-236 (424)
35 3n2o_A ADC, biosynthetic argin 99.2 3.1E-11 1.1E-15 103.8 10.4 103 2-109 177-294 (648)
36 3nzq_A ADC, biosynthetic argin 99.2 3.2E-11 1.1E-15 104.0 10.3 103 2-109 194-311 (666)
37 3nzp_A Arginine decarboxylase; 99.2 7.1E-11 2.4E-15 101.2 10.7 104 2-109 154-273 (619)
38 2yxx_A Diaminopimelate decarbo 99.2 3E-11 1E-15 97.5 5.6 115 2-132 107-241 (386)
39 1knw_A Diaminopimelate decarbo 99.1 2E-10 7E-15 94.0 7.8 95 3-110 119-227 (425)
40 3n29_A Carboxynorspermidine de 98.1 7.8E-06 2.7E-10 66.9 7.1 90 3-109 136-237 (418)
41 3mt1_A Putative carboxynorsper 98.0 7.3E-06 2.5E-10 65.7 5.6 92 2-109 95-198 (365)
42 3kru_A NADH:flavin oxidoreduct 83.0 6.7 0.00023 30.8 8.5 111 12-135 198-315 (343)
43 3hgj_A Chromate reductase; TIM 80.7 15 0.00051 28.7 9.7 114 12-135 207-326 (349)
44 3gr7_A NADPH dehydrogenase; fl 77.2 23 0.00079 27.6 9.8 100 25-135 209-315 (340)
45 3cu2_A Ribulose-5-phosphate 3- 73.6 6 0.00021 29.5 5.3 71 60-133 147-223 (237)
46 3ctl_A D-allulose-6-phosphate 72.7 26 0.00088 25.8 9.8 105 11-135 95-204 (231)
47 3l5l_A Xenobiotic reductase A; 72.5 11 0.00037 29.7 6.8 114 12-135 213-333 (363)
48 3inp_A D-ribulose-phosphate 3- 72.4 28 0.00095 26.0 9.7 72 62-136 157-232 (246)
49 1tqj_A Ribulose-phosphate 3-ep 71.0 7.8 0.00027 28.5 5.4 71 62-135 135-209 (230)
50 1z41_A YQJM, probable NADH-dep 70.7 33 0.0011 26.5 9.2 99 25-134 209-314 (338)
51 1x7f_A Outer surface protein; 61.9 8.3 0.00029 31.0 4.1 98 27-128 17-124 (385)
52 2nly_A BH1492 protein, diverge 54.1 65 0.0022 24.0 9.5 111 9-130 39-160 (245)
53 3l5a_A NADH/flavin oxidoreduct 53.2 54 0.0018 26.3 7.6 103 24-135 241-354 (419)
54 1tqx_A D-ribulose-5-phosphate 52.8 47 0.0016 24.3 6.7 99 17-136 109-210 (227)
55 3k30_A Histamine dehydrogenase 52.1 26 0.00088 29.7 5.8 109 14-137 214-334 (690)
56 1jub_A Dihydroorotate dehydrog 50.6 57 0.002 24.5 7.1 44 87-132 230-276 (311)
57 3zwt_A Dihydroorotate dehydrog 50.4 91 0.0031 24.5 9.6 94 25-131 220-331 (367)
58 1f76_A Dihydroorotate dehydrog 48.9 86 0.0029 23.8 11.0 96 24-132 210-323 (336)
59 1x7f_A Outer surface protein; 48.2 22 0.00076 28.5 4.5 40 9-52 74-113 (385)
60 3epw_A IAG-nucleoside hydrolas 46.4 41 0.0014 26.2 5.8 41 21-73 10-51 (338)
61 3i65_A Dihydroorotate dehydrog 45.5 1.2E+02 0.0039 24.5 8.4 96 25-133 268-380 (415)
62 2cw6_A Hydroxymethylglutaryl-C 41.1 85 0.0029 23.6 6.7 106 7-126 119-231 (298)
63 3lhl_A Putative agmatinase; pr 40.7 68 0.0023 24.2 6.1 38 27-67 196-244 (287)
64 1ydo_A HMG-COA lyase; TIM-barr 39.1 88 0.003 23.8 6.6 14 43-56 154-167 (307)
65 2xvc_A ESCRT-III, SSO0910; cel 38.8 21 0.00073 20.9 2.2 27 38-65 32-58 (59)
66 1o94_A Tmadh, trimethylamine d 38.0 77 0.0026 27.0 6.6 114 14-136 206-330 (729)
67 2ftp_A Hydroxymethylglutaryl-C 36.2 1.2E+02 0.004 22.9 6.9 115 7-136 122-244 (302)
68 4ef8_A Dihydroorotate dehydrog 36.1 1.5E+02 0.0053 23.1 8.3 45 87-134 266-313 (354)
69 1pq3_A Arginase II, mitochondr 35.9 1.4E+02 0.0047 22.5 7.4 30 34-67 240-269 (306)
70 2qv5_A AGR_C_5032P, uncharacte 35.8 1.4E+02 0.0047 22.4 9.7 109 10-129 67-186 (261)
71 2r47_A Uncharacterized protein 35.6 16 0.00054 25.8 1.6 32 35-68 93-124 (157)
72 1lt8_A Betaine-homocysteine me 34.8 73 0.0025 25.6 5.6 61 2-70 158-218 (406)
73 3ngf_A AP endonuclease, family 34.7 1.3E+02 0.0043 21.6 6.7 49 11-64 133-182 (269)
74 1ps9_A 2,4-dienoyl-COA reducta 34.6 90 0.0031 26.2 6.4 113 13-135 197-318 (671)
75 1i60_A IOLI protein; beta barr 34.1 1.2E+02 0.0042 21.4 6.9 45 12-63 126-170 (278)
76 2qjg_A Putative aldolase MJ040 32.9 1.4E+02 0.0048 21.7 11.5 103 9-134 132-244 (273)
77 3niq_A 3-guanidinopropionase; 32.7 57 0.0019 25.2 4.5 29 34-67 252-280 (326)
78 2p0o_A Hypothetical protein DU 32.0 21 0.00073 28.5 2.0 39 8-50 49-87 (372)
79 3pzl_A Agmatine ureohydrolase; 31.2 83 0.0028 24.2 5.3 28 34-67 241-268 (313)
80 2aeb_A Arginase 1; hydrolase, 30.8 1.4E+02 0.0046 22.8 6.5 30 34-67 244-273 (322)
81 3dx5_A Uncharacterized protein 30.8 1.5E+02 0.0051 21.3 6.9 46 10-64 124-169 (286)
82 3ble_A Citramalate synthase fr 30.7 1.8E+02 0.0062 22.3 7.3 27 44-71 196-222 (337)
83 2kks_A Uncharacterized protein 30.4 77 0.0026 21.2 4.5 38 34-73 48-86 (146)
84 2cev_A Protein (arginase); enz 30.4 1.3E+02 0.0044 22.6 6.2 30 34-67 238-267 (299)
85 3nio_A Guanidinobutyrase; PA14 30.3 65 0.0022 24.7 4.5 29 34-67 255-283 (319)
86 1gq6_A Proclavaminate amidino 29.8 48 0.0016 25.3 3.6 29 34-67 247-275 (313)
87 1k77_A EC1530, hypothetical pr 29.6 1.5E+02 0.005 20.9 6.7 49 11-64 126-175 (260)
88 3txv_A Probable tagatose 6-pho 29.4 2.3E+02 0.008 23.1 10.7 52 2-56 23-79 (450)
89 1nvm_A HOA, 4-hydroxy-2-oxoval 29.4 1.9E+02 0.0066 22.2 7.2 14 43-56 146-159 (345)
90 3kl4_B DPAP B, YSCV, signal pe 29.4 18 0.00063 19.0 0.8 12 119-130 9-20 (42)
91 1vhn_A Putative flavin oxidore 28.6 1.5E+02 0.0051 22.4 6.3 105 7-134 110-220 (318)
92 1tv5_A Dhodehase, dihydroorota 28.0 2.4E+02 0.0082 22.8 12.8 94 25-131 296-406 (443)
93 2q02_A Putative cytoplasmic pr 27.6 1.6E+02 0.0056 20.7 6.3 42 9-55 120-161 (272)
94 3vni_A Xylose isomerase domain 27.2 1.7E+02 0.006 21.0 7.3 48 11-64 134-181 (294)
95 4fxv_A ELAV-like protein 1; RN 27.0 41 0.0014 20.7 2.4 19 14-33 36-54 (99)
96 2a0m_A Arginase superfamily pr 25.9 2.2E+02 0.0075 21.6 9.7 38 34-73 248-285 (316)
97 2r14_A Morphinone reductase; H 25.3 2.2E+02 0.0076 22.2 6.9 108 14-134 223-335 (377)
98 3cqj_A L-ribulose-5-phosphate 25.3 1.9E+02 0.0066 20.8 6.3 44 11-63 149-192 (295)
99 4dz4_A Agmatinase; hydrolase; 25.1 2.3E+02 0.0079 21.6 7.1 29 34-67 258-286 (324)
100 3s8s_A Histone-lysine N-methyl 24.2 43 0.0015 21.2 2.1 53 13-67 22-76 (110)
101 2zds_A Putative DNA-binding pr 24.2 1.8E+02 0.0063 21.3 6.0 46 11-64 162-207 (340)
102 2qul_A D-tagatose 3-epimerase; 23.8 1.9E+02 0.0066 20.6 6.0 48 11-64 135-182 (290)
103 3m1r_A Formimidoylglutamase; s 23.8 2.4E+02 0.0083 21.4 9.5 35 38-73 260-294 (322)
104 2hk0_A D-psicose 3-epimerase; 23.5 2.2E+02 0.0074 20.8 7.3 49 10-64 152-200 (309)
105 3cny_A Inositol catabolism pro 23.5 1.7E+02 0.0058 21.0 5.7 46 10-64 142-187 (301)
106 1ffk_Y Ribosomal protein L39E; 23.3 87 0.003 17.6 3.0 22 13-36 10-31 (49)
107 1ydn_A Hydroxymethylglutaryl-C 23.3 2.3E+02 0.0079 21.0 7.0 47 7-56 118-165 (295)
108 2hc5_A ORF 99, hypothetical pr 22.1 56 0.0019 21.6 2.4 46 10-59 43-100 (117)
109 2fiq_A Putative tagatose 6-pho 21.8 3.2E+02 0.011 22.0 8.6 89 6-99 22-119 (420)
110 1xfk_A Formimidoylglutamase; f 21.6 2.7E+02 0.0094 21.2 10.0 30 34-67 266-296 (336)
111 1yoe_A Hypothetical protein YB 21.5 1.7E+02 0.0058 22.4 5.4 41 21-73 10-50 (322)
112 3bg3_A Pyruvate carboxylase, m 20.7 2.8E+02 0.0095 24.0 7.0 49 6-56 221-271 (718)
113 1woh_A Agmatinase; alpha/beta 20.5 2.8E+02 0.0095 20.8 7.2 30 34-67 241-270 (305)
114 4eiv_A Deoxyribose-phosphate a 20.4 2.2E+02 0.0077 21.9 5.8 56 6-67 163-222 (297)
115 2v5j_A 2,4-dihydroxyhept-2-ENE 20.3 2.8E+02 0.0095 20.8 7.7 17 2-18 117-133 (287)
116 2cqc_A Arginine/serine-rich sp 20.1 69 0.0024 18.9 2.4 19 14-33 32-50 (95)
No 1
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=100.00 E-value=1e-36 Score=235.51 Aligned_cols=133 Identities=34% Similarity=0.421 Sum_probs=118.3
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCC--c
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--T 78 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~--~ 78 (142)
+++||||++.+++|++.+.+.+ ++++|+|+||||.+|+|+|++++++.++++.+. .+|+|+++|||||+++.+++ .
T Consensus 100 ~i~sVds~~~a~~l~~~a~~~~-~~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~-~~~~l~l~Glmt~~~~~~d~~~~ 177 (245)
T 3sy1_A 100 WCITIDRLRIATRLNDQRPAEL-PPLNVLIQINISDENSKSGIQLAELDELAAAVA-ELPRLRLRGLSAIPAPESEYVRQ 177 (245)
T ss_dssp EEEEECCHHHHHHHHHHSCTTS-CCEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHT-TCTTEEEEEEECCCCCCSCHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHcC-CCceEEEEEECCCCcCCcCCCHHHHHHHHHHHH-cCCCCeEEEEEEeCCCCCCHHHH
Confidence 5799999999999999999888 899999999999999999999999999999999 99999999999999983333 4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcccc
Q 032365 79 PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK 138 (142)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~~ 138 (142)
...|+++.++++.|++. +.. +++||||||+||+.|+++|+|+||+||+|||+|+|.+
T Consensus 178 ~~~f~~l~~l~~~l~~~-~~~--~~~LSmGmS~d~~~Ai~~G~t~vRvGt~iFg~r~y~~ 234 (245)
T 3sy1_A 178 FEVARQMAVAFAGLKTR-YPH--IDTLALGQSDDMEAAIAAGSTMVAIGTAIFGARDYSK 234 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-STT--CCEEECCCSTTHHHHHHHTCCEEEESHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHh-CCC--CCEEeccCcHhHHHHHHcCCCEEECchHHhCCCCCCC
Confidence 58999999999999887 444 7999999999999999999999999999999999975
No 2
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=100.00 E-value=5.5e-35 Score=225.73 Aligned_cols=127 Identities=42% Similarity=0.613 Sum_probs=115.5
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHH
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPE 80 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~ 80 (142)
+++||||++.+++|++.+.+.+ ++++|+|+||||++|+|+|+.++++.++++.+. .+|+|+++|||||++..+++. .
T Consensus 100 ~i~sVds~~~a~~L~~~a~~~g-~~~~V~LqVdtG~e~~R~Gv~~ee~~~l~~~i~-~l~~L~l~GlmTh~a~~dd~~-~ 176 (244)
T 3r79_A 100 VVESIDREKIARALSEECARQG-RSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCR-DELKLPVEGLMCIPPAEENPG-P 176 (244)
T ss_dssp EEEEECSHHHHHHHHHHHHHHT-CCCEEEEEBCTTCCTTSCSBCHHHHHHHHHHHH-HTSCCCCCEEECCCCTTSCSH-H
T ss_pred EEEeeCCHHHHHHHHHHHHHcC-CCceEEEEEECCCCcCCCCCCHHHHHHHHHHHH-cCCCCEEEEEEecCCCCCCHH-H
Confidence 4799999999999999999888 899999999999999999999999999999999 999999999999999844443 7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcccc
Q 032365 81 NFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK 138 (142)
Q Consensus 81 ~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~~ 138 (142)
+|++|.++.+.+ + +..+|||||+||+.|+++|+|+||||++|||+|+|.+
T Consensus 177 ~f~~l~~l~~~l----~----~~~lSmGmS~d~~~Ai~~G~t~vRvGtaIfg~r~~~~ 226 (244)
T 3r79_A 177 HFALLAKLAGQC----G----LEKLSMGMSGDFETAVEFGATSVRVGSAIFGSRAENL 226 (244)
T ss_dssp HHHHHHHHHHHH----T----CCEEECCCTTTHHHHHHTTCSEEEECHHHHCCHHHHH
T ss_pred HHHHHHHHHHhC----C----CCEEEeecchhHHHHHHcCCCEEEeeHHHhCCCchhh
Confidence 888888876654 2 5789999999999999999999999999999999865
No 3
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=100.00 E-value=4e-34 Score=222.13 Aligned_cols=137 Identities=33% Similarity=0.564 Sum_probs=110.8
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCC---CceEEEEEeCCCCCCccCCCh-hhHHHHHHHHH-ccCCCeeEeeEeeec--CC
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRK---PLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVR-LRCPNLEFSGLMTIG--MP 73 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~---~~~v~I~v~tg~~~~R~G~~~-~~~~~l~~~i~-~~~~~l~l~Gl~th~--~~ 73 (142)
++++|||++.+++|++.+.+.+ + +++|||+||||+||+|+|+++ +++.++++.+. ..+|+|+++|||||+ +.
T Consensus 109 l~~sVds~~~a~~l~~~a~~~~-~~~~~l~V~lqVdtG~e~~R~G~~~~~e~~~l~~~i~~~~~~~L~l~Glmth~~~~~ 187 (256)
T 1ct5_A 109 SVETIDSLKKAKKLNESRAKFQ-PDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNV 187 (256)
T ss_dssp EEEEECSHHHHHHHHHHHHHHC-TTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHSTTCCSEEEEEEECCCCCC-
T ss_pred EEEEECCHHHHHHHHHHHHHcC-CCCCCceEEEEEECCCCCCCcCcCchHHHHHHHHHHHHccCCCeeEEEEEEECCcCC
Confidence 5899999999999999998887 7 899999999999999999999 89999999885 268999999999999 76
Q ss_pred CC--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccccccC
Q 032365 74 DY--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAKKQQ 141 (142)
Q Consensus 74 ~~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~~~~~ 141 (142)
.+ +....+|++|.++++.|++.+. ++.++|||||+||+.+++.|+||||||++|||+++|.++.|
T Consensus 188 ad~~~~~~~~f~~~~~~~~~l~~~~~---~~~~lS~Gms~d~~~ai~~g~t~VR~G~~lfG~~~~~~~~~ 254 (256)
T 1ct5_A 188 SHEDSKENRDFATLVEWKKKIDAKFG---TSLKLSMGMSADFREAIRQGTAEVRIGTDIFGARPPKNEAR 254 (256)
T ss_dssp --------HHHHHHHHHHHHHHHHHC---CCCEEECCCTTTHHHHHHTTCSEEEESHHHHC---------
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCC---CCCEEEecccHhHHHHHHcCCCEEEecHHHhCCCcCCCccc
Confidence 22 2245899999999999987422 36899999999999999999999999999999999987765
No 4
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=99.97 E-value=1.1e-29 Score=199.22 Aligned_cols=135 Identities=37% Similarity=0.557 Sum_probs=112.7
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCC--c
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--T 78 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~--~ 78 (142)
++++|||+++++.|++.+.+.+ ++++|+|+||||++.+|+|++++++.++++.+. .+|+|+++|||||++..+++ .
T Consensus 137 l~~~Vds~~~l~~L~~~a~~~~-~~~~V~lkVdtGme~~R~G~~~ee~~~l~~~i~-~~~~l~l~Gl~th~~~~~~~~~~ 214 (282)
T 3cpg_A 137 TIESVDSIDLAEKISRRAVARG-ITVGVLLEVNESGEESKSGCDPAHAIRIAQKIG-TLDGIELQGLMTIGAHVHDETVI 214 (282)
T ss_dssp EEEEECCHHHHHHHHHHHHHHT-CCEEEEEEBCCSSCTTSSSBCGGGHHHHHHHHH-TCTTEEEEEEECCCCCSSCHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHhcC-CCceEEEEEECCCCCCCCCcCHHHHHHHHHHHH-hCCCceEEeEEEECCCCCCHHHH
Confidence 3689999999999999998887 899999999999555999999999999999999 99999999999999984332 2
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-CCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 79 PENFRTLLNCRAEVCKALGMA-EDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 79 ~~~~~~~~~~~~~l~~~~g~~-~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
..+|+++.++++.+++.+|+. .++.++|+|||+++..+++.|+|+||||++|||++|+.
T Consensus 215 ~~~~~~l~~~~~~l~~~~g~~~~~~~~lS~g~S~~~~~~~~~~~~~VR~G~~lyG~~p~~ 274 (282)
T 3cpg_A 215 RRGFSHLRKTRDLILASGEPGTDRCRELSMGMTGDMELAIAEGSTIVRVGTAIFGERAFI 274 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCTTCCEEECCCTTTHHHHHHTTCSEEEESTTTC------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCEEEecCcHhHHHHHHcCCCEEEeccHHhCCCCCC
Confidence 458899999999888753532 13678999999999999999999999999999999864
No 5
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.95 E-value=1.6e-27 Score=196.32 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=114.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHccCC-CeeEeeEeeecCCCCC--C
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCP-NLEFSGLMTIGMPDYT--S 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~-~~~~~l~~~i~~~~~-~l~l~Gl~th~~~~~~--~ 77 (142)
+++|||+++++.|++.+.+.+ ++++|+|+||+| |+|+|+.+ +++.++++.+. ++| +|++.|||||+++.++ .
T Consensus 144 ~~~Vds~~~l~~L~~~a~~~~-~~~~V~l~VdtG--~~R~Gv~~~~e~~~l~~~i~-~~~~~l~l~Gl~th~g~~~~~~~ 219 (426)
T 3gwq_A 144 FCLVDSVEGVEQLGEFFKSVN-KQLQVLLELGVP--GGRTGVRDAAQRNAVLEAIT-RYPDTLKLAGVELYEGVLKEEHE 219 (426)
T ss_dssp EEEECCHHHHHHHHHHHHHTT-CCEEEEEEECCT--TSSSSBCSHHHHHHHHHHHH-TSTTTEEEEEEEECGGGCCSHHH
T ss_pred EEEeCCHHHHHHHHHHHHHCC-CeeEEEEEeCCC--CCcCCCCCHHHHHHHHHHHH-cCCCCEEEEeEEEEccccCCHHH
Confidence 689999999999999999988 899999999999 89999975 89999999999 999 9999999999997332 2
Q ss_pred cHHHHHHHHHHHHHHHHHhCC-CCCCCeEEecCchhHHHHHHc---------CCcEEecCccccCCCc
Q 032365 78 TPENFRTLLNCRAEVCKALGM-AEDQCELSMGMSGDFEQAIEM---------GSTSVRIGSTIFGPRE 135 (142)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~~g~-~~~~~~lS~G~s~~~~~a~~~---------g~t~VR~G~~ifg~~~ 135 (142)
...+|+++.++++.|++. |+ ..+++.+|||||+||..+++. |+|+||+|++||+|+.
T Consensus 220 ~~~~~~~l~~l~~~L~~~-g~~~~~~~~lS~G~S~~~~~a~~~~~~~~~~~~g~t~vR~Gs~if~d~~ 286 (426)
T 3gwq_A 220 VREFLQSAVAVTRELVEQ-ERFARAPAVLSGAGSAWYDVVAEEFVKASETGKVEVVLRPGCYLTHDVG 286 (426)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCCSSSSEEEEECCSTTHHHHHHHTHHHHHSSSEEEEECCCCSSSSCSH
T ss_pred HHHHHHHHHHHHHHHHHc-CCCCCCCCEEEecCChhHHHHHhhhhccccCCCcCEEEecceEEEcChH
Confidence 457899999999999987 64 112788999999999998874 8999999999999995
No 6
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.93 E-value=6.4e-25 Score=178.26 Aligned_cols=130 Identities=13% Similarity=0.122 Sum_probs=114.2
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHH---HHHHHccCCCeeEeeEeeecCC-CCC
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGI---VEHVRLRCPNLEFSGLMTIGMP-DYT 76 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l---~~~i~~~~~~l~l~Gl~th~~~-~~~ 76 (142)
++++|||++++++|++.+.+.+ ++++|+|+|||| |+|+|++++++.++ ++.+. ++|+|++.|||||++. +..
T Consensus 100 i~~~vds~~~l~~l~~~a~~~~-~~~~V~l~vdtG--~~R~G~~~~e~~~~~~~~~~i~-~~~~l~l~Gl~tH~~~~~~~ 175 (386)
T 1vfs_A 100 IDVSVSGMWALDEVRAAARAAG-RTARIQLKADTG--LGRNGCQPADWAELVGAAVAAQ-AEGTVQVTGVWSHFACADEP 175 (386)
T ss_dssp CEEEECSHHHHHHHHHHHHHHT-SCEEEEEEBCSS--CCSSSBCHHHHHHHHHHHHHHH-HTTSEEEEEEECCCSSTTST
T ss_pred CEEEECCHHHHHHHHHHHHhcC-CceEEEEEEcCC--CCCCCCCHhHHHHHHHHHHHHH-hCCCceEEEEEecCCCCCCC
Confidence 4689999999999999998887 899999999999 89999999887444 88898 9999999999999997 332
Q ss_pred C---cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 77 S---TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 77 ~---~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
+ ...|+++|.++.+.+++. |++ ++.+|+|||+++..+++.+.|+||||+++||.+++.
T Consensus 176 ~~~~~~~~~~~f~~~~~~l~~~-g~~--~~~~~~g~s~g~~~~~~~~~~~vR~G~~lyg~~p~~ 236 (386)
T 1vfs_A 176 GHPSIRLQLDAFRDMLAYAEKE-GVD--PEVRHIANSPATLTLPETHFDLVRTGLAVYGVSPSP 236 (386)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT-TCC--CSEEEEECHHHHHHCGGGCSSEEEECGGGGTCCSCG
T ss_pred CcHHHHHHHHHHHHHHHHHHhc-CCC--CCeEEecCCHHHHcCccccCCEEEeChhhhCCCccc
Confidence 2 357999999999999876 876 678999999999988888999999999999998763
No 7
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.93 E-value=5.7e-25 Score=178.33 Aligned_cols=130 Identities=18% Similarity=0.210 Sum_probs=113.8
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh---hhHHHHHHHHHccCCCeeEeeEeeecCC-CCC
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP---SSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYT 76 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~---~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~ 76 (142)
++++|||+++++.|++.+.+.+ ++++|||+|||| |+|+|+++ +++.++++.+. ++|+|++.|||||++. +..
T Consensus 104 i~~~vds~~~l~~l~~~a~~~~-~~~~V~l~vdtG--~~R~G~~~~~~~~~~~~~~~i~-~~~~l~l~Gl~tH~~~~~~~ 179 (384)
T 1xfc_A 104 VQVAVSSLRQLDELLHAVRRTG-RTATVTVKVDTG--LNRNGVGPAQFPAMLTALRQAM-AEDAVRLRGLMSHMVYADKP 179 (384)
T ss_dssp CEEEECSHHHHHHHHHHHHHHC-CCEEEEEEBCSS--CCSSSBCTTTHHHHHHHHHHHH-HTTSEEEEEEECCC-----C
T ss_pred cEEEECCHHHHHHHHHHHHhcC-CceEEEEEEECC--CCccCCCcCcHHHHHHHHHHHH-hCCCCcEEEEEecCCCcCCC
Confidence 4689999999999999998887 899999999999 89999998 89999999999 9999999999999997 322
Q ss_pred C---cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 77 S---TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 77 ~---~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
+ ...++++|.++++.+++. |++ ++.+|+|||+++..+++.+.|+||+|+++||++++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~l~~g~s~~~~~~~~~~~~~vR~G~~lyg~~~~~ 240 (384)
T 1xfc_A 180 DDSINDVQAQRFTAFLAQAREQ-GVR--FEVAHLSNSSATMARPDLTFDLVRPGIAVYGLSPVP 240 (384)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHT-TCC--CSEEECBCHHHHHHCGGGCCSEECCSGGGGTCCSSG
T ss_pred CcHHHHHHHHHHHHHHHHHHhc-CCC--CCeEEEecCHHHhcCccccCCEEccCHHhHCCCccc
Confidence 2 347999999999999875 876 678999999999988888999999999999998753
No 8
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.92 E-value=6.4e-25 Score=178.27 Aligned_cols=126 Identities=12% Similarity=0.182 Sum_probs=112.0
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCC---C
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYT---S 77 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~---~ 77 (142)
++++|||++++++|++. + ++++|||+|||| |+|+|++ +++.++++.+. ++|+|++.|||||++..++ +
T Consensus 100 i~~~v~s~~~l~~l~~~----~-~~~~v~lkvdtG--m~R~G~~-~e~~~~~~~i~-~~~~l~l~Gl~tH~~~ad~~~~~ 170 (374)
T 4ecl_A 100 LTQTLIDYRYSLLLNKQ----G-YDIKAHIKIDTG--MHRLGFS-TEDKDKILAAF-SLKHIKVAGIFTHLCAADSLEEN 170 (374)
T ss_dssp CEEEECCHHHHHHHHTT----C-CCEEEEEEEESS--SCSSSEE-SSCHHHHHHHT-TCTTEEEEEEECCCSCTTCCSHH
T ss_pred CEEEECCHHHHHHHHhc----C-CCccEEEEEcCC--CCcCccC-HHHHHHHHHHH-hCCCceEEEEEEECCccCcccCc
Confidence 46899999999999887 5 789999999999 8999999 88999999999 9999999999999998333 1
Q ss_pred ----cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcccc
Q 032365 78 ----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYAK 138 (142)
Q Consensus 78 ----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~~ 138 (142)
..+|+++|.++.+.|++. |++ ++.+|+|+|+++..+++.+.|+||||++|||..|+..
T Consensus 171 ~~~~~~~q~~~f~~~~~~l~~~-g~~--~~~~~~~nSa~~~~~~~~~~d~vR~Gi~lyG~~p~~~ 232 (374)
T 4ecl_A 171 DVAFTNKQIGSFYKVLDWLKSS-GLN--IPKVHIQSSYGLLNYPELECDYIRVGVALYGVLSSTN 232 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TCC--CCEEECCCHHHHHHCTTCCCSEEEESGGGGTCCSSSC
T ss_pred CcHHHHHHHHHHHHHHHHHHHc-CCC--CCeEEecCCchhhcCcccCCCEEcccceeeCCCCccc
Confidence 247999999999999876 876 6789999999999888999999999999999988753
No 9
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.91 E-value=1e-24 Score=176.62 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=106.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhh--HHHHHHHHHccCCCeeEeeEeeecCCCCC-C-
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS--CLGIVEHVRLRCPNLEFSGLMTIGMPDYT-S- 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~--~~~l~~~i~~~~~~l~l~Gl~th~~~~~~-~- 77 (142)
+++|||.++++.|++.+.+.+ ++++|+|+|||| |+|+|+.+++ +.++++ .+ +|++.|||||+++.+. .
T Consensus 110 ~~~Vds~~~l~~l~~~a~~~~-~~~~V~l~vdtG--~~R~G~~~~~~~l~~~~~----~l-~l~l~Gl~th~~~~~~~~~ 181 (376)
T 3llx_A 110 HILLDNITQAQAVVDYAAEFG-QDFSVFIEIDSD--DHRGGIKPSDSKLLTIAK----TL-GEHFTGLMTHAGGSYACNT 181 (376)
T ss_dssp EEEECSHHHHHHHHHHHHHHT-CCCEEEEEBCSS--SSSSCBCTTCTHHHHHHH----HH-GGGEEEEECCCGGGGGCCS
T ss_pred EEEECCHHHHHHHHHHHHhcC-CceEEEEEECCC--CCCCCCCCchHHHHHHHH----Hh-CCEEeEEEEecccccCCCC
Confidence 578999999999999998888 899999999999 8999998866 444444 33 8999999999998222 1
Q ss_pred -------cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHc-CCcEEecCccccCCCccc
Q 032365 78 -------TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEM-GSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 -------~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~-g~t~VR~G~~ifg~~~~~ 137 (142)
..+++++|.++.+.|++. |++ ++.+|+|||+++..+++. +.||||||+++||+++|.
T Consensus 182 ~~~~~~~~~~q~~~~~~~~~~l~~~-g~~--~~~vs~g~S~~~~~~~~~~~~~~vR~G~~lyg~~~~~ 246 (376)
T 3llx_A 182 EQGLKNFAKQECDAVRIARNNLETA-GIH--CAITSVGSTPTAHFGEDFSDISEVRAGVYTTFDLVMK 246 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-TCC--CCEEEECCHHHHHHCSCCTTCSEECCCGGGTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEEcCChhhhhhhhcCCccEeccceEEeccHhHh
Confidence 247889999999999876 876 688999999999888877 889999999999999874
No 10
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.91 E-value=3e-24 Score=174.62 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=112.4
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHccCCCeeEeeEeeecCC-CC-CC-
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY-TS- 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~-~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~-~~- 77 (142)
+++|||+++++.|++ +.+.+ ++++|||+|||| |+|+|+++ +++.++++.+. ++|+|++.|||||++. +. +.
T Consensus 106 ~~~vds~~~l~~l~~-a~~~~-~~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~i~-~~~~l~l~Gl~tH~~~~d~~~~~ 180 (391)
T 2vd8_A 106 ALTVFQXEWVDEAIX-LWDGS-STMXYHINFDSG--MGRIGIRERXELXGFLXSLE-GAPFLELEGVYTHFATADEVETS 180 (391)
T ss_dssp EEECCCHHHHHHHHH-HCCSS-CCEEEEEEBCSS--CCSSSBCCHHHHHHHHHHHT-TCTTEEEEEEECCCSSTTSSSCH
T ss_pred EEEEcCHHHHHHHHH-HHhcC-CceEEEEEEeCC--CCCCCCCchhhHHHHHHHHh-hcCCceEEEeeeccccccCCCcH
Confidence 689999999999999 87777 889999999999 89999986 89999999999 9999999999999997 33 22
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcc
Q 032365 78 -TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 78 -~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
...|+++|.++.+.+++. |+. ++.+|+|||.++..+++.+.|+||||+++||..++
T Consensus 181 ~~~~q~~~f~~~~~~l~~~-g~~--~~~~~~gnS~g~~~~~~~~~~~vR~G~~lyg~~p~ 237 (391)
T 2vd8_A 181 YFDXQYNTFLEQLSWLXEF-GVD--PXFVHTANSAATLRFQGITFNAVRIGIAMYGLSPS 237 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCC--CCSEECCCHHHHTTCTTCCTTEEEESTTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHhc-cCC--cceEEecchhHhhcCcccCCCEEehhHHhcCCCCc
Confidence 347999999999998876 876 56799999999887788899999999999998875
No 11
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.90 E-value=2.2e-24 Score=175.07 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=109.2
Q ss_pred CeEecCCHHHHHHH-HHHHHhcCCCCceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHccCCCeeEeeEeeecCC-CCCC
Q 032365 1 MVEGVGNEKIANHL-DKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS 77 (142)
Q Consensus 1 ~i~svds~~~~~~l-~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~-~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~ 77 (142)
++++|||+++++.| ++.+.+.+ ++++|||+|||| |+|+|+.+ +++.++++.+. ++|+|++.|||||++. |..+
T Consensus 102 i~~~V~s~~~l~~l~~~~a~~~~-~~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~i~-~~~~l~l~Gl~tH~a~ad~~~ 177 (371)
T 3e5p_A 102 LSVTVATQEWLEAALQQLTPESN-TPLRVHLKVDTG--MGRIGFLTPEETKQAVRFVQ-SHKEFLWEGIFTHFSTADEID 177 (371)
T ss_dssp CEEEECCHHHHHHHHHHHCSCCS-CCBCEEEEBCSS--SCSSSBCSSHHHHHHHHHHH-HSTTBCCCEEECCCSCTTSSC
T ss_pred CEEEECCHHHHHHHHHHHHHHcC-CceEEEEEECCC--CCcCCCCCHHHHHHHHHHHH-hCCCccEEEEEEEcCCCCCCC
Confidence 46899999999999 99998887 899999999999 89999998 99999999999 9999999999999998 3322
Q ss_pred ---cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 78 ---TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 ---~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
..+|+++|.++.+.+++. ++.+|+++|......++.+.|+||||++|||..|..
T Consensus 178 ~~~~~~Q~~~F~~~~~~l~~~------~~~~h~~NSa~~~~~~~~~~d~vR~Gi~lYG~~p~~ 234 (371)
T 3e5p_A 178 TSYFEKQAGRFKAVLAVLEEL------PRYVHVSNSATALWHPDVPGNMIRYGVAMYGLNPSG 234 (371)
T ss_dssp CHHHHHHHHHHHTTSSSCSCC------CSEEECBCHHHHHHCTTSSCSEEEECGGGGTCCTTT
T ss_pred cHHHHHHHHHHHHHHHHhhhc------CCeEEEecChhHhcCcccCCCeEeeCceeECCCccc
Confidence 247888887766654321 357899999998888889999999999999998654
No 12
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.90 E-value=6.1e-24 Score=173.05 Aligned_cols=126 Identities=16% Similarity=0.166 Sum_probs=105.5
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCCCccCCChhh-HHHHHHHHHccCCCeeEeeEeeecCC-CCCC
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRK-PLKVLVQVNTSGEESKSGIDPSS-CLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS 77 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~-~~~v~I~v~tg~~~~R~G~~~~~-~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~ 77 (142)
++++|||+++++.|++.+.+.+ + +++|||+|||| |+|+|+.+++ +.++++.+. ++|+|+++|||||++. |..+
T Consensus 101 i~~~V~s~~~l~~l~~~a~~~~-~~~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~i~-~~~~l~l~Gl~tH~a~ad~~~ 176 (382)
T 4a3q_A 101 VALTVPSKQWLKEAIKNISGEQ-EKKLWLHIKLDTG--MGRLGIKDTNTYQEVIEIIQ-QYEQLVFEGVFTHFACADEPG 176 (382)
T ss_dssp CBEEECCHHHHHHHHHTCCTTC-CSCEEEEEEBCSS--SSSSSBCCHHHHHHHHHHHH-HCTTEEEEEEECCC-------
T ss_pred CEEEECCHHHHHHHHHHHHHcC-CCceeEEEEECCC--CCcCCCChHHHHHHHHHHHH-hCCCceEEEEEEECcCCCCCC
Confidence 4689999999999999998887 7 89999999999 8999999976 999999999 9999999999999997 3322
Q ss_pred --cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 78 --TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 --~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
...|+++|.++.+.+ .. ++.+|+++|......++.+.|+||||+.|||..|..
T Consensus 177 ~~~~~Q~~~F~~~~~~l-----~~--~~~~h~aNSa~~l~~~~~~~d~vR~Gi~lYG~~p~~ 231 (382)
T 4a3q_A 177 DMTTEQYQRFKDMVNEA-----IK--PEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSE 231 (382)
T ss_dssp CHHHHHHHHHHHHHTTS-----CC--CSEEECCCHHHHHHCCCTTCSEECCCGGGGTCCSSH
T ss_pred chHHHHHHHHHHHHHhh-----CC--CCcEEEEcChhhhcCcccCCCeEeecceeECCCccc
Confidence 457888888766544 23 567899999998888888999999999999998753
No 13
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.90 E-value=1.4e-23 Score=168.74 Aligned_cols=127 Identities=19% Similarity=0.218 Sum_probs=109.2
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CC-CC-
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY-TS- 77 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~-~~- 77 (142)
++++|||++++++|++.+.+ +++|+|+|||| |+|+|++++++.++++.+. ++|+|++.|||||++. +. +.
T Consensus 96 i~~~vds~~~l~~l~~~a~~----~~~v~l~vdtG--~~R~G~~~~~~~~~~~~~~-~~~~l~~~Gl~tH~~~~~~~~~~ 168 (361)
T 2dy3_A 96 IDLAVISPAHAKALIETDAE----HIRVSIKIDSG--LHRSGVDEQEWEGVFSALA-AAPHIEVTGMFTHLACADEPENP 168 (361)
T ss_dssp CEEEECSHHHHHHHHTSCCS----CEEEEEEBCCS--SCSSSBCHHHHHHHHHHHH-TCTTEEEEEEECCCC--------
T ss_pred CEEEECCHHHHHHHHHhCcc----CCEEEEEEeCC--CCCCCCCHHHHHHHHHHHH-hCCCCCEEEEEecCCCcCCCCcH
Confidence 36899999999999987643 58999999999 8999999999999999999 9999999999999987 32 21
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 78 -TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 -~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
...++++|.++++.+++. |++ ++.+|+|||+++..+++.+.|+||+|+++||+.++.
T Consensus 169 ~~~~~~~~~~~~~~~l~~~-g~~--~~~~~~g~s~~~~~~~~~~~~~vR~G~~l~g~~~~~ 226 (361)
T 2dy3_A 169 ETDRQIIAFRRALALARKH-GLE--CPVNHVCNSPAFLTRSDLHMEMVRPGLAFYGLEPVA 226 (361)
T ss_dssp CHHHHHHHHHHHHHHHHHT-TCC--CCSCBCCCHHHHHHCGGGCTTEECCCGGGGTCCSST
T ss_pred HHHHHHHHHHHHHHHHHhc-CCC--CCeEEEeCCHHHhcCcccCCCEEecchHhhCCCccc
Confidence 358999999999999875 876 577899999999888888999999999999988753
No 14
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=99.90 E-value=3.1e-23 Score=168.72 Aligned_cols=124 Identities=16% Similarity=0.149 Sum_probs=103.9
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHccCCCeeEeeEeeecCC-CCCCc-
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTST- 78 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~-~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~~- 78 (142)
+++|||+++++.|++.+ +.+ ++++|||+|||| |+|+|+++ +++.++++.+. ++|+|++.|||||++. +....
T Consensus 102 ~~~vds~~~l~~l~~~a-~~~-~~~~V~lkvdtG--m~R~G~~~~~e~~~~~~~i~-~~~~l~l~Gl~tH~~~~~~~~~~ 176 (388)
T 1bd0_A 102 ALTVFRSDWLEEASALY-SGP-FPIHFHLKMDTG--MGRLGVKDEEETKRIVALIE-RHPHFVLEGLYTHFATADEVNTD 176 (388)
T ss_dssp EEEECCHHHHHHHHHHC-CCS-SCEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHH-HSTTEEEEEEECCCSSTTSSCCH
T ss_pred EEEECCHHHHHHHHHHh-ccC-CCeEEEEEEcCC--CCcCCCCCHHHHHHHHHHHH-hCCCceEEEEEEccCCCCCCCcH
Confidence 58999999999999998 777 889999999999 89999986 89999999999 9999999999999997 33222
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCcc
Q 032365 79 --PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 79 --~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
..|+++|.+ +++.+|++ ++.+|+|||+++..+++.+.|+||||+++||..|.
T Consensus 177 ~~~~q~~~f~~----l~~~~g~~--~~~~~~g~S~~~~~~~~~~~~~vR~G~~lyG~~p~ 230 (388)
T 1bd0_A 177 YFSYQYTRFLH----MLEWLPSR--PPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPS 230 (388)
T ss_dssp HHHHHHHHHHH----HHTTCSSC--CSEEECCCHHHHHHCTTSCTTEEEECGGGGTCCSC
T ss_pred HHHHHHHHHHH----HHhhcCCC--CCeEEecCCHHHhcCcccCCCEEehhHHHHCCCcc
Confidence 234444433 55433655 67899999999998888899999999999998875
No 15
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.89 E-value=3.5e-23 Score=167.75 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=106.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCCh-hhHHHHHHHHHccCCCeeEeeEeeecCC-CCCC--
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDP-SSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS-- 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~-~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~-- 77 (142)
+++|||+++++.|++.+.+. ++++|||+|||| |+|+|+.+ +++.++++.+. + |+|+++|||||++. |..+
T Consensus 102 ~~~V~s~~~l~~l~~~a~~~--~~~~V~lkvdtG--m~R~G~~~~ee~~~~~~~i~-~-~~l~l~Gl~tH~a~ad~~~~~ 175 (367)
T 3mub_A 102 TLTVAGLEWIQALLDKEVDL--TGLTVHLKIDSG--MGRIGFREASEVEQAQDLLQ-Q-HGVCVEGIFTHFATADEESDD 175 (367)
T ss_dssp EEEECCHHHHHHHHHTTCCC--TTCEEEEEECSS--CCSSSBCSHHHHHHHHHHHH-H-TTCEEEEEEECCSSTTSSCCH
T ss_pred EEEECCHHHHHHHHHHHHhc--CCeeEEEEECCC--CCcCCCCcHHHHHHHHHHHc-c-CCcEEEEEEEEccCCCCCCCH
Confidence 68999999999999988654 579999999999 89999998 99999999999 8 99999999999997 3322
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 78 -TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 -~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
..+|+++|.++.+.+++. ++.+|+++|......++.+.|+||||+.|||..|..
T Consensus 176 ~~~~Q~~~F~~~~~~l~~~------~~~~h~~NSa~~l~~~~~~~d~vR~Gi~lYG~~p~~ 230 (367)
T 3mub_A 176 YFNAQLERFKTILASMKEV------PELVHASNSATTLWHVETIFNAVRMGDAMYGLNPSG 230 (367)
T ss_dssp HHHHHHHHHHHHHHTCSSC------CSEEEEECHHHHHHCGGGCCSEEEECTTTTTCCTTT
T ss_pred HHHHHHHHHHHHHHHhhhc------CCeEEEecChHHhcCcccCCCeEEhhhHhhCCCCcc
Confidence 247899998877765431 357899999998888889999999999999987654
No 16
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.89 E-value=1.2e-23 Score=171.04 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=106.9
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CCCC--
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS-- 77 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~-- 77 (142)
++++|||++++++|++.+.+.+ ++++|||+|||| |+|+|+.++++.++++.+. ++|+|+++|||||++. |..+
T Consensus 114 i~~~V~s~~~l~~l~~~a~~~~-~~~~V~lkVdtG--m~R~G~~~~e~~~l~~~i~-~~~~l~l~Gl~tH~a~ad~~~~~ 189 (376)
T 3kw3_A 114 IIPLLNSWSTIEDWQTLCQKKN-KKFPAIIQVDTN--MSRLGLDKKELQKLIKNPT-IFEKAEIKYILSHLANGEDASHS 189 (376)
T ss_dssp CEEEECSHHHHHHHHHHHHHHT-CCCEEEEEBCSS--CCSSSBCHHHHHHHHHCCT-HHHHSEEEEEECCCSSTTCTTCH
T ss_pred CEEEECCHHHHHHHHHHHHHcC-CCeEEEEEECCC--CCcccCCHHHHHHHHHHHH-hCCCCcEEEEEEECCCCCCCCcH
Confidence 4789999999999999998888 899999999999 8999999999999999888 8899999999999998 3322
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 78 -TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 -~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
..+|+++|.++.+.++ + ++ +|+++|......++.+.|+||||+.|||..|..
T Consensus 190 ~~~~Q~~~F~~~~~~l~---~----~~-~h~aNSa~~l~~~~~~~d~vR~Gi~lYG~~p~~ 242 (376)
T 3kw3_A 190 SNNKQLAAFKRVLAQLP---T----CK-VSFANSGGIFLGSDFYFDLVRPGIALYGVDPHG 242 (376)
T ss_dssp HHHHHHHHHHHHHTTSC---C----CC-EECCCHHHHTTCGGGTTTEECCSGGGGTCCTTC
T ss_pred HHHHHHHHHHHHHhhcc---C----CC-EEEEeChhhhcCccccCCEEecChhhcCCCCCc
Confidence 2468888887665432 2 33 899999988777889999999999999997654
No 17
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.88 E-value=1.9e-22 Score=161.93 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=101.3
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CCCC--c
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS--T 78 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~--~ 78 (142)
+++|||+++++.|++ + +.+ ++++|||+|||| |+|+|++++++.++++.+. ++|+|++.|||||++. +... .
T Consensus 96 ~~~vds~~~l~~l~~-a-~~~-~~~~V~l~vdtG--~~R~G~~~~~~~~~~~~i~-~~~~l~l~Gl~th~~~~~~~~~~~ 169 (357)
T 1rcq_A 96 WCVVHCAWQLEAIER-A-SLA-RPLNVWLKMDSG--MHRVGFFPEDFRAAHERLR-ASGKVAKIVMMSHFSRADELDCPR 169 (357)
T ss_dssp EEEECSHHHHHHHHH-C-CCS-SCEEEEEEBCSS--SCSSSBCHHHHHHHHHHHH-HTTCEEEEEEECCCSSTTCTTCTH
T ss_pred EEEECCHHHHHHHHh-h-ccC-CCeEEEEEEcCC--CCCCCCCHHHHHHHHHHHH-hCCCCcEEEEEEcccCCCCCCcHH
Confidence 689999999999999 7 777 899999999999 8999999999999999999 9999999999999987 3222 1
Q ss_pred -HHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 79 -PENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 79 -~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
..|+++|.++.+ .+. .+ +|+|||+++..+++.+.|+||||+++||++++.
T Consensus 170 ~~~~~~~f~~~~~------~l~--~~-~s~~ns~~~~~~~~~~~~~vR~G~~lyg~~~~~ 220 (357)
T 1rcq_A 170 TEEQLAAFSAASQ------GLE--GE-ISLRNSPAVLGWPKVPSDWVRPGILLYGATPFE 220 (357)
T ss_dssp HHHHHHHHHHHHT------TCC--SC-EECCCHHHHHHCTTSCCSEECCCGGGGTCCSSS
T ss_pred HHHHHHHHHHHHh------ccC--CC-eEEEeCHHhhcCcccCCCEEccCHHhhCCCccc
Confidence 245555555432 222 23 899999999988888999999999999998863
No 18
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.88 E-value=1.4e-22 Score=164.39 Aligned_cols=121 Identities=18% Similarity=0.243 Sum_probs=101.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCC-eeEeeEeeecCC-CCCC--
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN-LEFSGLMTIGMP-DYTS-- 77 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~-l~l~Gl~th~~~-~~~~-- 77 (142)
+++|||+++++.|++ + +.+ ++++|+|+|||| |+|+|++++++.++++.+. ++|+ |++.|||||++. +...
T Consensus 116 ~~~vds~~~l~~l~~-a-~~~-~~~~V~l~vdtG--m~R~G~~~~e~~~~~~~i~-~~~~~l~l~Gl~tH~~~~d~~~~~ 189 (379)
T 2rjg_A 116 HTAVHNEEQLAALEE-A-SLD-EPVTVWMKLDTG--MHRLGVRPEQAEAFYHRLT-QCKNVRQPVNIVSHFARADEPKCG 189 (379)
T ss_dssp EEEECSHHHHHHHHH-C-CCS-SCBCEEEEBCSS--CCSSSBCHHHHHHHHHHHT-TCSSBCSSCEEECCCSSTTCTTST
T ss_pred EEEECCHHHHHHHHh-h-CCC-CCeEEEEEECCC--CCccCCCHHHHHHHHHHHH-hCCCcEEEEEEEEECCccCCCCcH
Confidence 689999999999999 6 666 789999999999 8999999999999999999 9999 999999999997 3322
Q ss_pred -cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHcCCcEEecCccccCCCccc
Q 032365 78 -TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEMGSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 -~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~g~t~VR~G~~ifg~~~~~ 137 (142)
...|+++|.++.+ .+. .+ +|+|||+++..+++.+.|+||||++|||++++.
T Consensus 190 ~~~~q~~~f~~~~~------~l~--~~-~s~gnS~~~~~~~~~~~~~vR~G~~lyG~~p~~ 241 (379)
T 2rjg_A 190 ATEKQLAIFNTFCE------GKP--GQ-RSIAASGGILLWPQSHFDWVRPGIILYGVSPLE 241 (379)
T ss_dssp HHHHHHHHHHHHHT------TCC--SC-EECCCHHHHHHCGGGCSSEECCCGGGGTCCSSS
T ss_pred HHHHHHHHHHHHHh------ccC--CC-eEEEECcchhcCcccCCCEECccHHHHCCCccc
Confidence 1346665555433 222 24 999999999998899999999999999998864
No 19
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.87 E-value=1.3e-22 Score=163.52 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=107.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhh--HHHHHHHHHccCC---CeeEeeEeeecCC--C
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS--CLGIVEHVRLRCP---NLEFSGLMTIGMP--D 74 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~--~~~l~~~i~~~~~---~l~l~Gl~th~~~--~ 74 (142)
+++|||+++++.|++.+.+.+ ++++|+|+|||| |+|+|+++++ +.++++.+. + | +|++.|||||.++ .
T Consensus 108 ~~~vds~~~l~~l~~~a~~~~-~~~~V~l~vd~g--~~R~G~~~~~~~~~~l~~~i~-~-~~~~~l~l~Gl~~h~g~~~~ 182 (376)
T 3anu_A 108 HVLLDRPEALASLRQRPLGHG-KRWLVWLKLDCG--NGRAGVRPTDPAALELAQAIA-N-DAPEEVTLVGVYAHCGNTYG 182 (376)
T ss_dssp EEEECCHHHHHHHHTSCCCTT-CCEEEEEEECCC----CSSBCTTSHHHHHHHHHHH-H-SCTTTEEEEEEEECCGGGC-
T ss_pred EEEeCCHHHHHHHHHHHHhCC-CceEEEEEECCC--CCcCCCCCCchhHHHHHHHHh-C-CCCCceEEEEEEeeCCcccC
Confidence 578999999999999988877 899999999999 8999999877 999999999 8 9 9999999999764 1
Q ss_pred CCC-------cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchh-HHHHHH-cCCcEEecCccccCCCcc
Q 032365 75 YTS-------TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGD-FEQAIE-MGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 75 ~~~-------~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~-~~~a~~-~g~t~VR~G~~ifg~~~~ 136 (142)
..+ ...++++|.++++.+++. |++ ++.+|+|+|++ +..+++ .+.|+||+|+++||+.++
T Consensus 183 ~~d~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~vs~Ggs~~~~~~~~~~~~~~~vr~G~~l~~~~~~ 250 (376)
T 3anu_A 183 CSGADTIQAIARTTTNAVLSFVAALRQA-GVP--CPQASIGSTPSCSHPIPEMSQLTELHPGNYIFYDLQQ 250 (376)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHT-TCC--CCEEEECCHHHHHSCCGGGGGSSEECCCGGGTCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEEccCHHHhhhhhhcCCceEeccceEEEecccc
Confidence 111 124788999999999876 876 78899999999 877776 689999999999998754
No 20
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=99.86 E-value=1.5e-21 Score=158.19 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=101.3
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHcc-CCCeeEeeEeeecCC-CCCC
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLR-CPNLEFSGLMTIGMP-DYTS 77 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~-~~~~~~l~~~i~~~-~~~l~l~Gl~th~~~-~~~~ 77 (142)
++++|||+++++.|++.+. .+ +++|+|+|||| |+|+|++ ++++.++++.+. + +|+|++.|||||++. +...
T Consensus 102 i~~~vds~~~l~~l~~~a~-~~--~~~V~l~vdtG--~~R~G~~~~ee~~~~~~~i~-~~~~~l~l~Gl~tH~~~~~~~~ 175 (380)
T 3co8_A 102 FLTTVSSLDWLKSADKILG-KE--KLSVNLAVDTG--MNRIGVRSKKDLKDEIEFLQ-EHSDHFSYDGIFTHFASSDNPD 175 (380)
T ss_dssp CEEEECCHHHHHHHHHHCT-TC--CEEEEEEBCSS--SCSSSBCSHHHHHHHHHHHH-HCTTTEEEEEEECCCC------
T ss_pred CEEEECCHHHHHHHHHhcc-cC--CceEEEEEcCC--CCCCCCCCHHHHHHHHHHHH-hhCCCceEEEEEEcCCCCCCCC
Confidence 4689999999999999887 54 79999999999 8999998 899999999999 9 999999999999997 3222
Q ss_pred ---cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHHc---CCcEEecCccccCCCccc
Q 032365 78 ---TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIEM---GSTSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 ---~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~~---g~t~VR~G~~ifg~~~~~ 137 (142)
...|+++|.++.+. ... +..+|+|+|+++..+++. +.|+||||++|||+.++.
T Consensus 176 ~~~~~~q~~~f~~~~~~-----~~~--~~~~~~~nS~g~~~~~~~~~~~~~~vR~G~~lyG~~p~~ 234 (380)
T 3co8_A 176 DHYFQRQKNRWYELIDG-----LIM--PRYVHVMNSGAAMYHSKELPGCNSIARVGTVVYGVEPSE 234 (380)
T ss_dssp ---CHHHHHHHHHHHTT-----SCC--CSEEECBCHHHHHHCGGGCTTSCSEEEESTTTTTCCTTT
T ss_pred cHHHHHHHHHHHHHHhc-----cCC--CCcEEEeCCHHHhcCcccccCCCceEcccHhhhCcCCCc
Confidence 34566666664442 112 467899999999888888 999999999999998763
No 21
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.85 E-value=7.8e-22 Score=161.27 Aligned_cols=123 Identities=17% Similarity=0.158 Sum_probs=102.0
Q ss_pred CeEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhh-HHHHHHHHHccCCCeeEeeEeeecCCCCC-C-
Q 032365 1 MVEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSS-CLGIVEHVRLRCPNLEFSGLMTIGMPDYT-S- 77 (142)
Q Consensus 1 ~i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~-~~~l~~~i~~~~~~l~l~Gl~th~~~~~~-~- 77 (142)
++++|+|++++++|++. . + +++|||+|||| |+|+|+.+++ +.++++.+. ++|+|+++|||||++..++ +
T Consensus 103 l~~~V~s~~~l~~l~~~-~--~--~~~V~lkvDtG--m~R~G~~~~e~~~~~~~~i~-~~~~l~l~Gl~TH~a~ad~~~~ 174 (395)
T 3hur_A 103 IVITIPSLAWLQNLPDF-E--G--TLKVSLAIDTG--MTRIGFDKADEISAAKKIID-KNPQLDLFSVYTHFATADEAGE 174 (395)
T ss_dssp EEEEECCHHHHHTCCCC-S--S--CEEEEEEBCCS--SCSSSBCCHHHHHHHHHHHH-HCTTEEEEEEECCCTTTTSCSH
T ss_pred CEEEECCHHHHHHHHHh-c--C--CCcEEEEEcCC--CCCcCCChHHHHHHHHHHHH-hCCCceEEEEEEeCcCCCCCCC
Confidence 36899999999999887 3 4 79999999999 9999999976 999999999 9999999999999998332 2
Q ss_pred -----cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHHHHH-cC--CcEEecCccccCCCccc
Q 032365 78 -----TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQAIE-MG--STSVRIGSTIFGPREYA 137 (142)
Q Consensus 78 -----~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~a~~-~g--~t~VR~G~~ifg~~~~~ 137 (142)
..+|+++|.++.+.++ ++ ++.+|+++|......++ .+ .|+||||+.|||..|..
T Consensus 175 ~~~~~~~~Q~~~F~~~~~~l~----~~--~~~~h~aNSa~~l~~~~~~~~~~d~vR~Gi~LYG~~p~~ 236 (395)
T 3hur_A 175 KSKAYFEEQLRRWQELTINQG----FD--PSLFSMANSATCIWHHDDPRISFAAIRPGQLISGVNVSN 236 (395)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC----CC--GGGEECCCHHHHHHTTTCTTSCCSEECCCGGGGTCCTTT
T ss_pred cchHHHHHHHHHHHHHHHhcc----CC--CCeEEEcCCHHHhcCcccccccCceEecChhhcCCCCCc
Confidence 2368888877666542 22 46689999999887788 78 99999999999987654
No 22
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=99.79 E-value=5.7e-20 Score=150.12 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=98.4
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceE------------EEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKV------------LVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v------------~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+++|||++++++|++.+.+.+ ++++| |++||||++.+|+|++++++.++++.+. .+|+|++.|||+
T Consensus 126 ~~~vds~~~l~~l~~~a~~~~-~~~~v~lRvn~~~~~~~~~~idtG~~~~R~G~~~~e~~~~~~~~~-~~~~l~l~Gl~~ 203 (420)
T 2p3e_A 126 MFNVESRQELDVLNEIAGKLG-KKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYAS-KLENLEIVGIHC 203 (420)
T ss_dssp EEEECCHHHHHHHHHHHHHHT-CCEEEEEEEEC----------------CCSCEEGGGHHHHHHHHH-TCTTEEEEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHhcC-CCCcEEEEECCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHH-hCCCCCEEEEEE
Confidence 589999999999999998877 78999 5555566233999999999999999999 999999999999
Q ss_pred ecCC-CCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHH-------HHHcCCcEEecCccccCCCc
Q 032365 70 IGMP-DYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ-------AIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 70 h~~~-~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~-------a~~~g~t~VR~G~~ifg~~~ 135 (142)
|++. +.+ ...+++++|.++++.+++. |++ +..+++|++..... .++.+.++||+|+.+||.+.
T Consensus 204 H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~l~~Ggg~~~~~~~~~~~~~~~~~~~~vr~g~~~yg~~~ 276 (420)
T 2p3e_A 204 HIGSQILDISPYREAVEKVVSLYESLTQK-GFD--IKYLDIGGGLGIKYKPEDKEPAPQDLADLLKDLLENVKAKI 276 (420)
T ss_dssp CCCSSBSSCTHHHHHHHHHHHHHHHHHHT-TCC--CCEEECCCCBCCCCSTTCCCCCHHHHHHHHTTTC--CCSEE
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEECCCcCcCCCCCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 9986 322 2458999999999999886 876 67899987765432 14557899999999999654
No 23
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=99.64 E-value=9.7e-16 Score=125.42 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=89.7
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC-----------CCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG-----------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~-----------~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
+++|||.+++++|++.+.+.+ ++++|+|+||+|. +.+|+|++++++.++++.+. ++|+|++.|||+|
T Consensus 110 ~~~vds~~el~~l~~~a~~~~-~~~~V~lrvn~g~~~~~~~~~~~~~~srfG~~~~e~~~~~~~~~-~~~~l~l~Gl~~H 187 (428)
T 2j66_A 110 CIIAESVEELFYIEELAEKEN-KTARVAIRINPDKSFGSTAIKMGGVPRQFGMDESMLDAVMDAVR-SLQFTKFIGIHVY 187 (428)
T ss_dssp EEEECSHHHHHHHHHHHHHHT-CCEEEEEEEECSSCC--CCCSSSCCCCSSSEEGGGHHHHHHHHH-HCTTEEEEEEECC
T ss_pred EEEECCHHHHHHHHHHHHhhC-CCceEEEEEcCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH-hCCCCCEEEEEEE
Confidence 689999999999999998887 8899999999983 23899999999999999999 9999999999999
Q ss_pred cCC-CCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032365 71 GMP-DYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 71 ~~~-~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
.+. +.+ ...++++++.++++.++++.|++ ++.+++|++
T Consensus 188 ~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~l~~GGG 228 (428)
T 2j66_A 188 TGTQNLNTDSIIESMKYTVDLGRNIYERYGIV--CECINLGGG 228 (428)
T ss_dssp CCSCBCCHHHHHHHHHHHHHHHHHHHHHHCCC--CSEEECCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEeCCC
Confidence 765 322 24578999999999996555876 788998766
No 24
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=99.64 E-value=1.2e-15 Score=124.93 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=89.8
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------------~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+.+|||++++++|++.+.+.+ ++++|+|+||+| .+++|+|++++++.++++.+. ++|+|++.|||+
T Consensus 127 ~i~vds~~el~~l~~~a~~~~-~~~~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~~~e~~~l~~~~~-~~~~l~l~Gl~~ 204 (425)
T 2qgh_A 127 FLNVESFMELKTIETIAQSLG-IKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAK-KSAFLEPVSVHF 204 (425)
T ss_dssp EEEECSHHHHHHHHHHHHHHT-CCEEEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHHHH-HCSSEEEEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHhcC-CCceEEEEEeCCCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHH-hCCCccEEEEEE
Confidence 469999999999999998887 889999999986 348999999999999999999 999999999999
Q ss_pred ecCC-CCC--CcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032365 70 IGMP-DYT--STPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 70 h~~~-~~~--~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
|.+. +.+ ...++++++.++++.+++. |++ +..+++|+.
T Consensus 205 H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~l~~GGG 245 (425)
T 2qgh_A 205 HIGSQLLDLEPIIEASQKVAKIAKSLIAL-GID--LRFFDVGGG 245 (425)
T ss_dssp CCBSSBCCHHHHHHHHHHHHHHHHHHHHT-TCC--CCEEECCCC
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEECCC
Confidence 9775 322 2457999999999999875 876 788998865
No 25
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=99.62 E-value=1.6e-15 Score=124.25 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=90.6
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC------------CCCccCCChhh--HHHHHHHHHccCCCeeEeeE
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------------EESKSGIDPSS--CLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~------------~~~R~G~~~~~--~~~l~~~i~~~~~~l~l~Gl 67 (142)
+++|||++++++|++.+.+.+ ++++|+|+||+|. +++|+|+++++ +.++++.+. .+|+|++.||
T Consensus 130 ~~~vds~~el~~l~~~a~~~~-~~~~v~lrvn~g~~~~~~~~~~tG~~~~rfG~~~~~~~~~~~~~~~~-~~~~l~l~Gl 207 (434)
T 1twi_A 130 AFNVDSISELILINETAKELG-ETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMAL-EMEYVNVVGV 207 (434)
T ss_dssp EEEECSHHHHHHHHHHHHHHT-CCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTSHHHHHHHHHH-HCSSEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCCeEEEEECCCCCCCCCcccccCCCCCCccCChhhhHHHHHHHHHH-hCCCCCEEEE
Confidence 589999999999999998887 8899999999873 26999999888 999999999 9999999999
Q ss_pred eeecCC-CCCC--cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCch
Q 032365 68 MTIGMP-DYTS--TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSG 111 (142)
Q Consensus 68 ~th~~~-~~~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~ 111 (142)
|+|.+. +.+. ...+++++.++++.+++. |++ +..+++|++-
T Consensus 208 ~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~l~~GGg~ 251 (434)
T 1twi_A 208 HCHIGSQLTDISPFIEETRKVMDFVVELKEE-GIE--IEDVNLGGGL 251 (434)
T ss_dssp ECCCCSSBCCSHHHHHHHHHHHHHHHHHHHT-TCC--CSEEECCCCB
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEECCCc
Confidence 999775 3323 357899999999999886 876 7889988764
No 26
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=99.56 E-value=2.1e-14 Score=118.61 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=89.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------------~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+.+|||.+++++|++.+.+.+ ++++|+|+||++ .+.+|||++++++.++++.+. .+++|++.|||+
T Consensus 143 ~~~vds~~el~~l~~~a~~~~-~~~~V~lRVn~~~~~~~~~~i~tG~~~sRfGi~~~e~~~ll~~~~-~~~~l~l~Glh~ 220 (443)
T 3vab_A 143 CFNVESEPELEILSARAVAAG-KVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAA-SLPGLNVVGIDM 220 (443)
T ss_dssp EEEECCHHHHHHHHHHHHHHT-CCEEEEEEEECCBCTTTCCBC---CCCCSSSEEGGGHHHHHHHHH-HSTTEEEEEEEC
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCceEEEEECCCCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHh-hCCCceEEEEEE
Confidence 378999999999999999888 899999999864 345999999999999999999 999999999999
Q ss_pred ecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032365 70 IGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 70 h~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
|.+. +.+...++++++.++++.+++. |++ +..|++|+
T Consensus 221 H~gs~~~d~~~~~~a~~~~~~l~~~l~~~-G~~--l~~ldiGG 260 (443)
T 3vab_A 221 HIGSQIIDLEPFDNAFALMAELVKELQAD-GHN--IRHVDVGG 260 (443)
T ss_dssp CCCSSBCCSHHHHHHHHHHHHHHHHHHHT-TCC--CCEEECCC
T ss_pred eccCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEeCC
Confidence 9875 3333468999999999999876 876 78999875
No 27
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=99.55 E-value=1.6e-14 Score=119.24 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=89.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------------~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+.+|||.+++++|++.+.+.+ ++++|+|+||++ .+++|||++++++.++++.+. .+++|++.|||+
T Consensus 146 ~~~vds~~el~~l~~~a~~~~-~~~~V~lRvn~~~~~~~~~~i~tG~~~sKfG~~~~~~~~~~~~~~-~~~~l~l~Glh~ 223 (441)
T 3n2b_A 146 CFNVESEPELQRLNKVAGELG-VKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAH-SLPNLDVHGIDC 223 (441)
T ss_dssp EEEECSHHHHHHHHHHHHHHT-CCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGHHHHHHHHH-HCTTEEEEEEEC
T ss_pred EEEEcCHHHHHHHHHHHHhcC-CCcEEEEEeccCCCcCCCcccccCCCCCcccCCHHHHHHHHHHHh-cCCCeEEEEEEE
Confidence 468999999999999998887 899999999976 236999999999999999999 999999999999
Q ss_pred ecCCC-C--CCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032365 70 IGMPD-Y--TSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 70 h~~~~-~--~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
|.+.. . +...++++++.++++.+++. |++ +..|++|+-
T Consensus 224 H~gs~~~d~~~~~~a~~~~~~l~~~l~~~-G~~--l~~LdiGGG 264 (441)
T 3n2b_A 224 HIGSQLTALAPFIDATDRLLALIDSLKAE-GIH--IRHLDVGGG 264 (441)
T ss_dssp CTTCSCCCHHHHHHHHHHHHHHHHHHHHT-TCC--CCEEECCSC
T ss_pred eecCCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEECCC
Confidence 99862 2 22458899999999999875 876 789998754
No 28
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=99.53 E-value=3.2e-14 Score=118.00 Aligned_cols=105 Identities=17% Similarity=0.172 Sum_probs=87.8
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCCh--hhHHHHHHHHHccCCCeeEeeE
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDP--SSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------------~~~~R~G~~~--~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
+.+|||++++++|++.+.+.+ ++++|+|+||+| .+++|+|+++ +++.++++.+. ++++|++.||
T Consensus 135 ~i~vds~~el~~l~~~a~~~~-~~~~v~lrvn~g~~~~~~~~~~~~~~~srfG~~~~~~e~~~~~~~~~-~~~~l~l~Gl 212 (467)
T 2o0t_A 135 HIVVDSMTEIERLDAIAGEAG-IVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVF-ATDHLRLVGL 212 (467)
T ss_dssp EEEECSHHHHHHHHHHHHHHT-CCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHHHHHH-HCSSEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhC-CCCeEEEEEcCCCCCCCCcccccCCCCCCcCCcCCHHHHHHHHHHHH-hCCCCCEEEE
Confidence 469999999999999998887 889999999986 4589999986 57899999999 9999999999
Q ss_pred eeecCC-C--CCCcHHHHHHHHHHHHHHHHHhC----CCCCCCeEEecCc
Q 032365 68 MTIGMP-D--YTSTPENFRTLLNCRAEVCKALG----MAEDQCELSMGMS 110 (142)
Q Consensus 68 ~th~~~-~--~~~~~~~~~~~~~~~~~l~~~~g----~~~~~~~lS~G~s 110 (142)
|+|.+. + .+...++++++.++++.|++++| ++ +..+++|+.
T Consensus 213 ~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~--~~~ln~GGG 260 (467)
T 2o0t_A 213 HSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQ--IATVDLGGG 260 (467)
T ss_dssp ECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTT--CCEEECCCC
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccC--CCEEEeCCC
Confidence 999765 3 22345899999999999975557 76 678887653
No 29
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=99.47 E-value=3.4e-14 Score=116.44 Aligned_cols=121 Identities=17% Similarity=0.206 Sum_probs=90.1
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CC
Q 032365 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY 75 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~------~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~ 75 (142)
.+|||.++++.|++.+. .++|+|+||||.+ |+|+|++++++.++++.++ ++ +|++.|||+|++. +.
T Consensus 148 ~~vds~~el~~l~~~a~-----~~~v~lrvd~g~~~~~~~~~~RfG~~~~e~~~~~~~~~-~~-~l~l~Gl~~H~gs~~~ 220 (419)
T 2plj_A 148 FVVDNLNELEKFKAYRD-----DVELLVRLSFRNSEAFADLSKKFGCSPEQALVIIETAK-EW-NIRIKGLSFHVGSQTT 220 (419)
T ss_dssp EEECSHHHHHTTGGGTT-----TCEEEEEBCC---------CCCSCBCHHHHHHHHHHHH-HT-TCEEEEEECCCCTTCC
T ss_pred EEeCCHHHHHHHHHhcC-----CCCEEEEEcCCCCCCCCCCCCCCcCCHHHHHHHHHHHH-hC-CCcEEEEEEECCCCCC
Confidence 78999999999987652 3789999999855 8999999999999999998 77 8999999999987 33
Q ss_pred CC--cHHHHHHHHHHHHHHHHHhCC-CCCCCeEEecCch--hHH---HHHHcCCcEEecCccccCC
Q 032365 76 TS--TPENFRTLLNCRAEVCKALGM-AEDQCELSMGMSG--DFE---QAIEMGSTSVRIGSTIFGP 133 (142)
Q Consensus 76 ~~--~~~~~~~~~~~~~~l~~~~g~-~~~~~~lS~G~s~--~~~---~a~~~g~t~VR~G~~ifg~ 133 (142)
+. ..++++++.++++.+++. |+ + +..+++|++- .|. ..++...++||+|...|++
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~-G~~~--~~~l~~GGG~~~~y~~~~~~~~~~~~~vr~~i~~y~~ 283 (419)
T 2plj_A 221 NPNKYVEAIHTCRHVMEQVVER-GLPA--LSTLDIGGGFPVNYTQQVMPIDQFCAPINEALSLLPE 283 (419)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHT-TCCC--CCEEECCCCCCCCSSSCCCCHHHHHHHHHHHHTTSCT
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-CCCC--CCEEEECCCcCcCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 22 347888899999998875 87 5 6788876542 110 0122334667777777664
No 30
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=99.40 E-value=1.3e-12 Score=105.10 Aligned_cols=119 Identities=10% Similarity=0.063 Sum_probs=89.8
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CC
Q 032365 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY 75 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~------~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~ 75 (142)
.+|||.++++.|++.+. .++|+|+||+|.+ ++|+|++++++.++++.++ .. +|++.|||+|++. +.
T Consensus 110 ~~vds~~~l~~l~~~~~-----~~~v~lrv~~~~~~~~~~~~~R~G~~~~~~~~~~~~~~-~~-~l~~~Gl~~H~gs~~~ 182 (372)
T 2nva_A 110 ATFDSSFELDKIHTYHP-----NCKMILRIRCDDPNATVQLGNKFGANEDEIRHLLEYAK-QL-DIEVIGISFHVGSGSR 182 (372)
T ss_dssp EEECSHHHHHHHHHHCT-----TCEEEEEBCCCCTTCSBCCTTTSSBCGGGHHHHHHHHH-HT-TCCEEEEECCCCBSBC
T ss_pred EEeCCHHHHHHHHHhCC-----CCeEEEEEecCCCCCcccCCCCCCCCHHHHHHHHHHHH-Hc-CCeEEEEEEEcCCCCC
Confidence 68999999999998753 3789999999832 2999999999999999998 77 8999999999886 32
Q ss_pred CC--cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHHH----HHHcCCcEEecCcccc
Q 032365 76 TS--TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFEQ----AIEMGSTSVRIGSTIF 131 (142)
Q Consensus 76 ~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~~----a~~~g~t~VR~G~~if 131 (142)
+. ...+++++.++++.+++. |++ +..+++|++-.... .++...++||+|...|
T Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~-g~~--~~~~~~GGg~~~~~~~~~~~~~~~~~vr~~i~~y 241 (372)
T 2nva_A 183 NPEAYYRAIKSSKEAFNEAISV-GHK--PYILDIGGGLHADIDEGELSTYMSDYINDAIKDF 241 (372)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-TCC--CCEEECCSCBCCCCC---CCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-CCC--CcEEEeCCCCCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 22 347888899999998876 876 67888886631100 0122345667776665
No 31
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=99.37 E-value=6e-13 Score=109.93 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=79.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------CCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-C
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-D 74 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~------~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~ 74 (142)
+.+|||.+++++|++.+ ++++|+|+||+|.. |+|||++++++.++++.++ .+ +|++.|||+|.+. +
T Consensus 130 ~~~vds~~el~~l~~~~-----~~~~v~lRin~g~~~~~~~~~~RfG~~~~~~~~~~~~~~-~~-~l~~~Gl~~H~gs~~ 202 (448)
T 3btn_A 130 IMTCDNEIELKKIARNH-----PNAKVLLHIATEDNIGGEDGNMKFGTTLKNCRHLLECAK-EL-DVQIIGVKFHVSSAC 202 (448)
T ss_dssp EEEECSHHHHHHHHHHC-----TTCEEEEEBCCCC--------CCCCBCHHHHHHHHHHHH-HH-TCEEEEEECCCCTTC
T ss_pred EEEeCCHHHHHHHHHhC-----CCCeEEEEEecCCCccCCCCCCcCCCCHHHHHHHHHHHH-hC-CCCEEEEEEECCCCC
Confidence 46899999999998874 35899999999855 7999999999999999998 77 8999999999986 3
Q ss_pred --CCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032365 75 --YTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 75 --~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
.+...++++++..+++.+++. |++ +..+++|+.
T Consensus 203 ~d~~~~~~~~~~~~~~~~~~~~~-G~~--~~~ldiGGG 237 (448)
T 3btn_A 203 KEYQVYVHALSDARCVFDMAGEF-GFT--MNMLDIGGG 237 (448)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHT-TCC--CCEEECCSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEeCCC
Confidence 223457888888888877765 876 678876543
No 32
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=99.33 E-value=7.6e-12 Score=102.53 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=86.0
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC------CCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-C
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-D 74 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~------~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~ 74 (142)
+.+|||.++++.|++.+ .+++|+|+||||. .|+|||++++++.++++.++ .. +|++.|||+|++. +
T Consensus 130 ~~~vds~~el~~l~~~~-----~~~~v~lrid~g~~~~~~~~~~RfG~~~~~~~~~~~~~~-~~-~l~~~Gl~~H~gs~~ 202 (425)
T 1f3t_A 130 VMTFDCVDELEKVAKTH-----PKAKMVLRISTDDSLARCRLSVKFGAKVEDCRFILEQAK-KL-NIDVTGVSFHVGSGS 202 (425)
T ss_dssp EEEECSHHHHHHHHHHC-----TTCEEEEEBCC----------CCSCBCHHHHHHHHHHHH-HT-TCEEEEEECCCCSCC
T ss_pred EEEeCCHHHHHHHHHhC-----CCCcEEEEEcCCCCCccCCCCCcCCCCHHHHHHHHHHHH-hC-CCeEEEEEEeCCCCC
Confidence 47899999999999874 3589999999872 27999999999999999998 77 8999999999986 3
Q ss_pred CCC--cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCchhHH----HHHHcCCcEEecCcccc
Q 032365 75 YTS--TPENFRTLLNCRAEVCKALGMAEDQCELSMGMSGDFE----QAIEMGSTSVRIGSTIF 131 (142)
Q Consensus 75 ~~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s~~~~----~a~~~g~t~VR~G~~if 131 (142)
.+. ..++++++..+++.+++. |++ +..+++|+.-... ..++...++||+|...|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~-G~~--~~~l~iGGG~~~~~~~~~~~~~~~~~vr~~i~~~ 262 (425)
T 1f3t_A 203 TDASTFAQAISDSRFVFDMGTEL-GFN--MHILDIGGGFPGTRDAPLKFEEIAGVINNALEKH 262 (425)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHT-TCC--CCEEECCCCCCSSTTSSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEeCCCcCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 322 346777777888877765 876 6788766543110 00223345666666665
No 33
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=99.32 E-value=1.3e-11 Score=102.62 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=80.4
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCC------CCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-C
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSG------EESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-D 74 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~------~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~ 74 (142)
+.+|||.++++.|++.+ ++++|+|+||+|. .|+|||++++++.++++.++ ++ +|++.|||+|.+. +
T Consensus 140 ~~~vds~~el~~l~~~~-----~~~~V~lRvn~g~~~~~~~~~~RfG~~~~~~~~~~~~~~-~~-~l~l~Glh~H~gs~~ 212 (471)
T 2oo0_A 140 MMTFDSEVELMKVARAH-----PKAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLLERAK-EL-NIDVVGVSFHVGSGC 212 (471)
T ss_dssp EEEECSHHHHHHHHHHC-----TTCEEEEEECCCCTTSSBCCTTTSCBCHHHHHHHHHHHH-HT-TCEEEEEEECCCBSC
T ss_pred EEEECCHHHHHHHHHhC-----CCCeEEEEEcCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-hC-CCcEEEEEEeCCCCC
Confidence 36899999999998874 3589999999872 27999999999999999998 77 8999999999986 3
Q ss_pred CCC--cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032365 75 YTS--TPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 75 ~~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
.+. ..++++++..+++.+++. |++ +..+++|+.
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~-G~~--~~~ldiGGG 247 (471)
T 2oo0_A 213 TDPETFVQAISDARCVFDMGAEV-GFS--MYLLDIGGG 247 (471)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHH-TCC--CCEEECCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHc-CCC--CCEEEECCC
Confidence 222 346788888888888775 876 678887654
No 34
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=99.28 E-value=2.3e-11 Score=99.88 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=76.3
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------CCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC---
Q 032365 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--- 73 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~--- 73 (142)
.+|||.+++++|++.+ +.++|+|+||++ ..++|||++++++.++++.++ +. +|++.|||+|.+.
T Consensus 131 ~~vds~~el~~l~~~~-----~~~~v~lRvn~~~~~~~~~~~skfG~~~~~~~~~~~~~~-~~-~l~l~Glh~H~gsq~~ 203 (424)
T 7odc_A 131 MTFDSEIELMKVARAH-----PKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAK-EL-NIDVIGVSFHVGSGCT 203 (424)
T ss_dssp EEECSHHHHHHHHHHC-----TTCEEEEEBCC-----------CCCBCHHHHHHHHHHHH-HT-TCEEEEEECCCCSSCC
T ss_pred EEeCCHHHHHHHHHhC-----CCCeEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-hC-CCCEEEEEEECCCCCC
Confidence 4899999999999885 347899999986 237999999999999999998 74 8999999999986
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032365 74 DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
+.+...++++++..+++.+++. |++ +..+.+|+
T Consensus 204 d~~~~~~a~~~~~~~~~~~~~~-G~~--~~~ldiGG 236 (424)
T 7odc_A 204 DPDTFVQAVSDARCVFDMATEV-GFS--MHLLDIGG 236 (424)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHH-TCC--CCEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEeCC
Confidence 2222457788888888877765 876 78898875
No 35
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=99.24 E-value=3.1e-11 Score=103.85 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=86.9
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeC-----------CCCCCccCCChhhHHHHHHHHHccCCCee-EeeEee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-----------SGEESKSGIDPSSCLGIVEHVRLRCPNLE-FSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~t-----------g~~~~R~G~~~~~~~~l~~~i~~~~~~l~-l~Gl~t 69 (142)
+.+|||+++++.|++.+++.| ++++|+|+||. |+..+|||++++++.++++.++ ++++|. +.|||+
T Consensus 177 ~IvVDS~~EL~~I~~~A~~~g-~~~~V~LRInp~~~~~~~~i~TGg~~SKFGi~~~e~~~ll~~l~-~~~~L~~l~GLHf 254 (648)
T 3n2o_A 177 FIVLEKMSELDLVLREAKSLG-VTPRLGIRIRLASQGAGKWQASGGEKSKFGLSASQVLNVISRLK-KENQLDTLQLVHF 254 (648)
T ss_dssp EEEECSTHHHHHHHHHHHHHT-CCCEEEEEBCCSTTSTTTTCSSSSCCCCCCBCHHHHHHHHHHHH-HTTCGGGEEEEEC
T ss_pred EEEECCHHHHHHHHHHHHhcC-CCcEEEEEEECCCCCCCCccccCCCCCcCcCCHHHHHHHHHHHH-hCCCCCceEEEEE
Confidence 368999999999999999988 88999999974 4456999999999999999999 999997 999999
Q ss_pred ecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032365 70 IGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 70 h~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
|.+. +.+....+++++.++++.+++. |++ +..|.+|+
T Consensus 255 HiGSqi~d~~~~~~al~~~~~l~~~L~~~-G~~--l~~LDiGG 294 (648)
T 3n2o_A 255 HLGSQMANIRDVRNGVNESARFYCELRTL-GAN--ITYFDVGG 294 (648)
T ss_dssp CCCSSBCCHHHHHHHHHHHHHHHHHHHHT-TCC--CCEEECCS
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CcEEEeCC
Confidence 8765 3233457888888999998865 876 78998865
No 36
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=99.24 E-value=3.2e-11 Score=104.04 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=86.4
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeC-----------CCCCCccCCChhhHHHHHHHHHccCCCee-EeeEee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-----------SGEESKSGIDPSSCLGIVEHVRLRCPNLE-FSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~t-----------g~~~~R~G~~~~~~~~l~~~i~~~~~~l~-l~Gl~t 69 (142)
+.+|||+++++.|++.+++.| ++++|+|+||. |+..+|||++++++.++++.++ ++++|+ +.|||+
T Consensus 194 ~ivVDS~~ELe~L~~~A~~~g-~~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~~e~~~ll~~l~-~~~~L~~l~GLHf 271 (666)
T 3nzq_A 194 YLVIEKMSEIAIVLDEAERLN-VVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLR-EAGRLDSLQLLHF 271 (666)
T ss_dssp EEEECSHHHHHHHHHHHHHTT-CCCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHHHHHHHHHHHH-HTTCTTTEEEEEC
T ss_pred EEEECCHHHHHHHHHHHHHcC-CCceEEEEEEecCCCCcCccccCCCCCcCcCCHHHHHHHHHHHH-hCCCCCCeEEEEE
Confidence 358999999999999999988 88999999964 4455999999999999999999 999997 999999
Q ss_pred ecCC---CCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032365 70 IGMP---DYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 70 h~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
|.+. +.+....+++++.++++.+++. |++ +..|.+|+
T Consensus 272 HiGSqi~d~~~~~~ai~~~~~l~~~L~~~-G~~--l~~LDiGG 311 (666)
T 3nzq_A 272 HLGSQMANIRDIATGVRESARFYVELHKL-GVN--IQCFDVGG 311 (666)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHHHTT-TCC--CCEEECCS
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCC--CCEEEeCC
Confidence 8875 2233457888888888888764 876 78998765
No 37
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=99.21 E-value=7.1e-11 Score=101.18 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=82.5
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeC-----------CCCCCccCCChhhHHHHHHHHHccCCCe-eEeeEee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT-----------SGEESKSGIDPSSCLGIVEHVRLRCPNL-EFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~t-----------g~~~~R~G~~~~~~~~l~~~i~~~~~~l-~l~Gl~t 69 (142)
+.+|||+++++.|++.+++.|.++++|+|+||. |..++|||++++++.++++.++ ++++| ++.|||+
T Consensus 154 ~ivVDS~~ELe~l~~~a~~~g~~~~~V~LRInp~~~g~~~~~~TGg~~sKFGi~~ee~~~ll~~l~-~~~~L~~l~GLHf 232 (619)
T 3nzp_A 154 TLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLK-ENKLLEQFTMIHF 232 (619)
T ss_dssp EEEESSHHHHHHHHHHHTTSCSCCCEEEEEBCCTTC-------------CCSBCHHHHHHHHHHHH-HTTCTTTEEEEEC
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCCEEEEEEecCCCCCcccccCCCCCccCcCCHHHHHHHHHHHH-hCCCCCceeEEEE
Confidence 468999999999999998764247899999984 4446999999999999999999 99999 5999999
Q ss_pred ecCC---CCCCcHHHHHHHHHHHHHHHHHhCC-CCCCCeEEecC
Q 032365 70 IGMP---DYTSTPENFRTLLNCRAEVCKALGM-AEDQCELSMGM 109 (142)
Q Consensus 70 h~~~---~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~lS~G~ 109 (142)
|.+. +.+....+++++.++++.+++. |+ + +..|.+|+
T Consensus 233 HiGSqi~d~~~~~~al~~~~~l~~~L~~~-G~~~--l~~LDiGG 273 (619)
T 3nzp_A 233 HLGSQITEIHPLKKALNEAGNIYTELRKM-GAKN--LKAINLGG 273 (619)
T ss_dssp CCCSCBCCSHHHHHHHHHHHHHHHHHHHT-TCTT--CCEEEEES
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCC--CCEEEeCC
Confidence 8765 3333457888899999998875 87 5 78887764
No 38
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=99.15 E-value=3e-11 Score=97.51 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=79.4
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCC------------CCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGE------------ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~------------~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
+.+|||.++++.|++.+.+ +++|+|+||++.+ ++|+|+++++ .++++ . ++++|++.|||+
T Consensus 107 ~~~vds~~el~~l~~~a~~----~~~v~lrv~~~~~~~~h~~i~tG~~~~RfG~~~~~-~~~~~--~-~~~~l~~~Gl~~ 178 (386)
T 2yxx_A 107 IVNVDSFEEMEIWRELNPE----GVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLED-LDSFM--E-RFRSMNIRGLHV 178 (386)
T ss_dssp EEEECCHHHHHHHHHHCCT----TCEEEEEEECCCCTTTSHHHHHHHHHSSSSEEGGG-HHHHH--H-HHTTSCEEEEEC
T ss_pred EEEeCCHHHHHHHHHhcCc----CCeEEEEECCCCCCCCCcccccCCCCCCCCCChhH-HHHHh--h-ccCCCcEEEEEE
Confidence 5789999999999998643 4789999987632 4999999988 88888 6 788999999999
Q ss_pred ecCC-CCCC--cHHHHHHHHHHHHHHHHHhCCCCCCCeEEec-Cchh-HH---HHHHcCCcEEecCccccC
Q 032365 70 IGMP-DYTS--TPENFRTLLNCRAEVCKALGMAEDQCELSMG-MSGD-FE---QAIEMGSTSVRIGSTIFG 132 (142)
Q Consensus 70 h~~~-~~~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G-~s~~-~~---~a~~~g~t~VR~G~~ifg 132 (142)
|++. +.+. ..++++++.++.+.+ . +..+..| +.+. +. ...+...++||+|...|+
T Consensus 179 H~gs~~~~~~~~~~~~~~~~~~~~~l------~--~~~~n~GGG~~~~~~~~~~~~~~~~~~vr~~i~~y~ 241 (386)
T 2yxx_A 179 HIGSQITRVEPFVEAFSKVVRASERY------G--FEEINIGGGWGINYSGEELDLSSYREKVVPDLKRFK 241 (386)
T ss_dssp CCCSSBCCSHHHHHHHHHHHHHHHHH------T--CSEEECCCCBCCCSSSCCCCHHHHHHHTGGGGTTCS
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHhC------C--CCEEEECCCcCcCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 9997 3222 346777777776655 1 4556533 3320 10 001234456777777764
No 39
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=99.09 E-value=2e-10 Score=94.01 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=70.7
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeC------------CCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032365 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNT------------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~t------------g~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
.+|||.++++.|++.+.+ .++.|+||+ |..|+|+|++++++.++++.++ ++ +|++.|||+|
T Consensus 119 ~~vds~~el~~l~~~a~~-----~~v~lRv~~~~~~~~h~~i~tG~~~~RfG~~~~~~~~~~~~~~-~~-~l~l~Gl~~H 191 (425)
T 1knw_A 119 VNAGSVDMLDQLGQVSPG-----HRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQ-RH-HLQLVGIHMH 191 (425)
T ss_dssp EEESSHHHHHHHHHHSTT-----CEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHH-HT-TCEEEEEECC
T ss_pred EEECCHHHHHHHHHhhhh-----ccEEEEECCCCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHH-HC-CCCEEEEEEE
Confidence 689999999999998743 367777764 4448999999999999999998 88 9999999999
Q ss_pred cCCCCCC--cHHHHHHHHHHHHHHHHHhCCCCCCCeEEecCc
Q 032365 71 GMPDYTS--TPENFRTLLNCRAEVCKALGMAEDQCELSMGMS 110 (142)
Q Consensus 71 ~~~~~~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~s 110 (142)
.+...+. ..++++++.++++ +. |++ +..+++|+.
T Consensus 192 ~gs~~~~~~~~~~~~~~~~~~~---~~-G~~--~~~ln~GGG 227 (425)
T 1knw_A 192 IGSGVDYAHLEQVCGAMVRQVI---EF-GQD--LQAISAGGG 227 (425)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHH---HH-TCC--CSEEECCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHH---Hh-CCC--CcEEEeCCC
Confidence 9863322 2355555544433 33 776 677877543
No 40
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=98.06 E-value=7.8e-06 Score=66.90 Aligned_cols=90 Identities=11% Similarity=0.054 Sum_probs=59.7
Q ss_pred EecCCHHHHHHHHHHHHhcCCCCceEEEEEeCC------------CCCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032365 3 EGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTS------------GEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 3 ~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg------------~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
.+|||.+++++|++.+. +++|+|+||++ ...+|||++++++.+ . .++ ++.||++|
T Consensus 136 i~vds~~EL~~l~~~a~-----~~~v~lRvnp~~~~~~~~~i~tg~~~sKFGi~~~~~~~-----~-~l~--~l~Glh~H 202 (418)
T 3n29_A 136 IVFNSLAQFHKFQSKTQ-----KNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFEN-----V-DLN--AIEGLHFH 202 (418)
T ss_dssp EEESSHHHHHHHGGGCT-----TSEEEEEBCCCCC----------CTTCCSSBCGGGGTT-----C-CCT--TCCEEECC
T ss_pred EEECCHHHHHHHHHhcC-----CCCEEEEEeCCCCCCCCcccccCCCCCcCcCCHHHHHH-----h-hcC--ceEEEEEe
Confidence 47999999999988764 47899999754 334999999987644 2 333 78999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032365 71 GMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
.+.. ...+.|.+..+.+..+....|++ +..|-+|+
T Consensus 203 igSq--~~~~~~~~~~~~~~~~~~~~g~~--l~~ldiGG 237 (418)
T 3n29_A 203 ALCE--ESADALEAVLKVFEEKFGKWIGQ--MKWVNFGG 237 (418)
T ss_dssp CCSS--BCHHHHHHHHHHHHHHHGGGTTT--CSEEECCS
T ss_pred cCCC--CCHHHHHHHHHHHHHHHHHhCCC--CCEEEeCC
Confidence 8754 23344444333333222223555 77887765
No 41
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=98.00 E-value=7.3e-06 Score=65.74 Aligned_cols=92 Identities=13% Similarity=-0.013 Sum_probs=54.1
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEe------------CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVN------------TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT 69 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~------------tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t 69 (142)
..+|||.+++++|++.+.+ .+|.|+|| ||...+|||++++++.+. .++ ++.||++
T Consensus 95 ~i~vds~~el~~l~~~a~~-----~~v~lRvnp~~~~~~~~~i~tg~~~sKFG~~~~~~~~~------~l~--~~~Glh~ 161 (365)
T 3mt1_A 95 KIIFNSISQLERFADKAAG-----IARGLRLNPQVSSSSFDLADPARPFSRLGEWDVPKVER------VMD--RINGFMI 161 (365)
T ss_dssp EEEESSHHHHHHHGGGGTT-----SEEEEEECCC----------------CCSBCCHHHHHT------TGG--GCSEEEE
T ss_pred EEEECCHHHHHHHHHHhcc-----CCEEEEEecCCCCCCCccccCCCCCCcCCCCHHHHhhh------ccC--CeEEEEE
Confidence 3579999999999998754 45566665 454459999999876542 222 7999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCCCCeEEecC
Q 032365 70 IGMPDYTSTPENFRTLLNCRAEVCKALGMAEDQCELSMGM 109 (142)
Q Consensus 70 h~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~lS~G~ 109 (142)
|.+..-. ..+.|.+..+....+....|++ +..|-+|+
T Consensus 162 HigSq~~-~~~~~~~~~~~~~~~~~~~g~~--~~~ldiGG 198 (365)
T 3mt1_A 162 HNNCENK-DFGLFDRMLGEIEERFGALIAR--VDWVSLGG 198 (365)
T ss_dssp CCC--CC-SHHHHHHHHHHHHHHHHHHHTT--SSEEECCS
T ss_pred eCCCCCC-CHHHHHHHHHHHHHHHHHhCCC--CCEEEeCC
Confidence 9875211 2333444333333332223555 67887765
No 42
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=83.05 E-value=6.7 Score=30.82 Aligned_cols=111 Identities=11% Similarity=0.119 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEee-ecCCCCCC--cHHHHHHHHHH
Q 032365 12 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT-IGMPDYTS--TPENFRTLLNC 88 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t-h~~~~~~~--~~~~~~~~~~~ 88 (142)
+.+..+.+..| ..++|.|+++... ...-|.+.++..++++.+. +. +.-|.. ++...... ....+ ...+
T Consensus 198 eiv~aVr~avg-~d~pv~vRls~~~-~~~~g~~~~~~~~~a~~l~-~~----vd~i~vs~g~~~~~~~~~~~~~--~~~~ 268 (343)
T 3kru_A 198 EVIDEVRKNWP-ENKPIFVRVSADD-YMEGGINIDMMVEYINMIK-DK----VDLIDVSSGGLLNVDINLYPGY--QVKY 268 (343)
T ss_dssp HHHHHHHHTSC-TTSCEEEEEECCC-SSTTSCCHHHHHHHHHHHT-TT----CSEEEEECCCSSCCCCCCCTTT--THHH
T ss_pred HHHHHHHhcCC-ccCCeEEEeechh-hhccCccHHHHHHHHHHhh-cc----ccEEeccCCceEeeeecccCce--eehH
Confidence 33444445455 5678999999853 3445888889999999887 43 333322 22221110 00000 1234
Q ss_pred HHHHHHHhCCCCCCCeEEecCchh---HHHHHHcC-CcEEecCccccCCCc
Q 032365 89 RAEVCKALGMAEDQCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPRE 135 (142)
Q Consensus 89 ~~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~~ 135 (142)
...+++..+ ++.+..|.-.+ ...+++.| .|.|-.|..++.+-.
T Consensus 269 ~~~ir~~~~----iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPd 315 (343)
T 3kru_A 269 AETIKKRCN----IKTSAVGLITTQELAEEILSNERADLVALGRELLRNPY 315 (343)
T ss_dssp HHHHHHHHT----CEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTT
T ss_pred HHHHHHhcC----cccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCe
Confidence 445555543 45666665332 33346777 799999999887644
No 43
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=80.71 E-value=15 Score=28.68 Aligned_cols=114 Identities=12% Similarity=0.185 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEee--ecCCCCCCcHHHHHHHHHHH
Q 032365 12 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT--IGMPDYTSTPENFRTLLNCR 89 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t--h~~~~~~~~~~~~~~~~~~~ 89 (142)
+.+..+.+..| ...+|.|+++.... ..-|++.++..++++.+. +.. +.+.-+.. +......+....+ ...+.
T Consensus 207 eiv~aVR~avG-~d~pV~vRls~~~~-~~~g~~~~~~~~la~~L~-~~G-vd~i~vs~g~~~~~~~~~~~~~~--~~~~~ 280 (349)
T 3hgj_A 207 QVAQAVREVVP-RELPLFVRVSATDW-GEGGWSLEDTLAFARRLK-ELG-VDLLDCSSGGVVLRVRIPLAPGF--QVPFA 280 (349)
T ss_dssp HHHHHHHHHSC-TTSCEEEEEESCCC-STTSCCHHHHHHHHHHHH-HTT-CCEEEEECCCSCSSSCCCCCTTT--THHHH
T ss_pred HHHHHHHHHhc-CCceEEEEeccccc-cCCCCCHHHHHHHHHHHH-HcC-CCEEEEecCCcCcccccCCCccc--cHHHH
Confidence 34445555556 56788889997642 345788889999999887 542 33322221 1111000000000 12334
Q ss_pred HHHHHHhCCCCCCCeEEecCc--hh-HHHHHHcC-CcEEecCccccCCCc
Q 032365 90 AEVCKALGMAEDQCELSMGMS--GD-FEQAIEMG-STSVRIGSTIFGPRE 135 (142)
Q Consensus 90 ~~l~~~~g~~~~~~~lS~G~s--~~-~~~a~~~g-~t~VR~G~~ifg~~~ 135 (142)
..+++..+ ++.+..|+- +. ...+++.| .+.|-+|+.++.+-.
T Consensus 281 ~~ir~~~~----iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPd 326 (349)
T 3hgj_A 281 DAVRKRVG----LRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPY 326 (349)
T ss_dssp HHHHHHHC----CEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTT
T ss_pred HHHHHHcC----ceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHhCch
Confidence 45555433 456666653 32 33356778 799999999887643
No 44
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=77.19 E-value=23 Score=27.57 Aligned_cols=100 Identities=8% Similarity=0.089 Sum_probs=58.1
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CCCC--cHHHHHHHHHHHHHHHHHhCCCCC
Q 032365 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYTS--TPENFRTLLNCRAEVCKALGMAED 101 (142)
Q Consensus 25 ~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~~--~~~~~~~~~~~~~~l~~~~g~~~~ 101 (142)
..+|.|++.... ...-|.+.++..++++.+. +.. +. -|..+.+. .... ....+ ...+...+++..+
T Consensus 209 ~~pv~vRls~~~-~~~~g~~~~~~~~la~~L~-~~G-vd--~i~vs~g~~~~~~~~~~~~~--~~~~~~~ik~~~~---- 277 (340)
T 3gr7_A 209 DGPLFVRISASD-YHPDGLTAKDYVPYAKRMK-EQG-VD--LVDVSSGAIVPARMNVYPGY--QVPFAELIRREAD---- 277 (340)
T ss_dssp CSCEEEEEESCC-CSTTSCCGGGHHHHHHHHH-HTT-CC--EEEEECCCSSCCCCCCCTTT--THHHHHHHHHHTT----
T ss_pred CCceEEEecccc-ccCCCCCHHHHHHHHHHHH-HcC-CC--EEEEecCCccCCCCCCCccc--cHHHHHHHHHHcC----
Confidence 467888998763 3345888899999999997 542 33 23333221 1100 00000 1234455666533
Q ss_pred CCeEEecCchh---HHHHHHcC-CcEEecCccccCCCc
Q 032365 102 QCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPRE 135 (142)
Q Consensus 102 ~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~~ 135 (142)
++.+..|.-.+ ...+.+.| .+.|-+|+.++.+-.
T Consensus 278 iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPd 315 (340)
T 3gr7_A 278 IPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPY 315 (340)
T ss_dssp CCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTT
T ss_pred CcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCch
Confidence 45666665333 33356778 899999999887643
No 45
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=73.61 E-value=6 Score=29.52 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=44.5
Q ss_pred CCeeEeeEeeecC-CCCCC-cHHHHHHHHHHHHHHHHHhCCCCCCCeE-EecCchh-HHHHHH--cCCcEEecCccccCC
Q 032365 60 PNLEFSGLMTIGM-PDYTS-TPENFRTLLNCRAEVCKALGMAEDQCEL-SMGMSGD-FEQAIE--MGSTSVRIGSTIFGP 133 (142)
Q Consensus 60 ~~l~l~Gl~th~~-~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~l-S~G~s~~-~~~a~~--~g~t~VR~G~~ifg~ 133 (142)
+.+.+..+||..+ .+-+. .....+++.++.+.+.+. |.+ ++.. -.|.+.+ .....+ .|.+.+=+|++||+.
T Consensus 147 ~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~-~~~--~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~ 223 (237)
T 3cu2_A 147 DQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNR-RVE--KLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG 223 (237)
T ss_dssp TTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGG-GGG--CEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred hcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhc-CCC--ceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence 3566777887544 32222 246777887777766543 443 3333 4444433 334578 899999999999985
No 46
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=72.75 E-value=26 Score=25.81 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecC-CCCCC-cHHHHHHHHHH
Q 032365 11 ANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM-PDYTS-TPENFRTLLNC 88 (142)
Q Consensus 11 ~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~-~~~~~-~~~~~~~~~~~ 88 (142)
+.++-+.+++.| .++-|-+|.++. .+.+ +.+. +.+.+.-+||..+ .+-+. .....+++.++
T Consensus 95 ~~~~i~~i~~~G---~k~gv~lnp~tp-------~~~~----~~~l---~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~l 157 (231)
T 3ctl_A 95 AFRLIDEIRRHD---MKVGLILNPETP-------VEAM----KYYI---HKADKITVMTVDPGFAGQPFIPEMLDKLAEL 157 (231)
T ss_dssp HHHHHHHHHHTT---CEEEEEECTTCC-------GGGG----TTTG---GGCSEEEEESSCTTCSSCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHcC---CeEEEEEECCCc-------HHHH----HHHH---hcCCEEEEeeeccCcCCccccHHHHHHHHHH
Confidence 445555556666 344446666631 1222 2121 2355666787443 33222 34667777777
Q ss_pred HHHHHHHhCCCCCCCe-EEecCch-hHHHHHHcCCcEEecC-ccccCCCc
Q 032365 89 RAEVCKALGMAEDQCE-LSMGMSG-DFEQAIEMGSTSVRIG-STIFGPRE 135 (142)
Q Consensus 89 ~~~l~~~~g~~~~~~~-lS~G~s~-~~~~a~~~g~t~VR~G-~~ifg~~~ 135 (142)
.+.+.+. |.+ ++. +-.|.++ +.....+.|.+.+=.| ++||+...
T Consensus 158 r~~~~~~-~~~--~~I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~~d 204 (231)
T 3ctl_A 158 KAWRERE-GLE--YEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAE 204 (231)
T ss_dssp HHHHHHH-TCC--CEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGGCS
T ss_pred HHHHhcc-CCC--ceEEEECCcCHHHHHHHHHcCCCEEEEccHHHhCCCC
Confidence 7776654 654 332 3445443 3445678899999999 99998533
No 47
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=72.49 E-value=11 Score=29.71 Aligned_cols=114 Identities=12% Similarity=0.014 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCccC-CChhhHHHHHHHHHccC--CCeeEeeEeeecCCCCCCcHHHHHHHHHH
Q 032365 12 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSG-IDPSSCLGIVEHVRLRC--PNLEFSGLMTIGMPDYTSTPENFRTLLNC 88 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G-~~~~~~~~l~~~i~~~~--~~l~l~Gl~th~~~~~~~~~~~~~~~~~~ 88 (142)
+.+..+.+..| ...+|.|+++... ...-| .+.++..++++.+. +. ..|.+.+-........ +....+ ...+
T Consensus 213 eiv~aVr~avg-~d~pV~vRis~~~-~~~~G~~~~~~~~~la~~L~-~~Gvd~i~vs~g~~~~~~~~-~~~~~~--~~~~ 286 (363)
T 3l5l_A 213 ETLAAVREVWP-ENLPLTARFGVLE-YDGRDEQTLEESIELARRFK-AGGLDLLSVSVGFTIPDTNI-PWGPAF--MGPI 286 (363)
T ss_dssp HHHHHHHTTSC-TTSCEEEEEEEEC-SSSCHHHHHHHHHHHHHHHH-HTTCCEEEEEECCCSSCCCC-CCCTTT--THHH
T ss_pred HHHHHHHHHcC-CCceEEEEecchh-cCCCCCCCHHHHHHHHHHHH-HcCCCEEEEecCcccccccc-CCCcch--hHHH
Confidence 33444444445 5678888998752 23345 66788888888887 54 2333322111111000 000000 1234
Q ss_pred HHHHHHHhCCCCCCCeEEecCchhH---HHHHHcC-CcEEecCccccCCCc
Q 032365 89 RAEVCKALGMAEDQCELSMGMSGDF---EQAIEMG-STSVRIGSTIFGPRE 135 (142)
Q Consensus 89 ~~~l~~~~g~~~~~~~lS~G~s~~~---~~a~~~g-~t~VR~G~~ifg~~~ 135 (142)
...+++..+ ++.+..|+-.+. ..+++.| .++|-+|+.++.+-.
T Consensus 287 ~~~ir~~~~----iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPd 333 (363)
T 3l5l_A 287 AERVRREAK----LPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPH 333 (363)
T ss_dssp HHHHHHHHT----CCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTT
T ss_pred HHHHHHHcC----CcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCch
Confidence 445555543 456766653332 2346777 799999999887643
No 48
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=72.37 E-value=28 Score=26.03 Aligned_cols=72 Identities=14% Similarity=0.162 Sum_probs=46.1
Q ss_pred eeEeeEeeec-CCCCCC-cHHHHHHHHHHHHHHHHHhCCCCCCC-eEEecCchh-HHHHHHcCCcEEecCccccCCCcc
Q 032365 62 LEFSGLMTIG-MPDYTS-TPENFRTLLNCRAEVCKALGMAEDQC-ELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 62 l~l~Gl~th~-~~~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~-~lS~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
+.+.-+||.. +..-+. ....++++.++.+.+.+. |.+ ++ .+-.|.++. ...+.+.|.+.+=+|++||+...+
T Consensus 157 vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~-~~~--~~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp 232 (246)
T 3inp_A 157 IDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISST-DRD--ILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSY 232 (246)
T ss_dssp CSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHH-TSC--CEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSCH
T ss_pred CCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhc-CCC--eeEEEECCcCHHHHHHHHHcCCCEEEEehHHhCCCCH
Confidence 4455577753 332222 246678888888777665 655 33 345566544 444678999999999999986544
No 49
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=71.01 E-value=7.8 Score=28.46 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=41.9
Q ss_pred eeEeeEeeecCC-CCCC-cHHHHHHHHHHHHHHHHHhCCCCCCCeEE-ecCch-hHHHHHHcCCcEEecCccccCCCc
Q 032365 62 LEFSGLMTIGMP-DYTS-TPENFRTLLNCRAEVCKALGMAEDQCELS-MGMSG-DFEQAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 62 l~l~Gl~th~~~-~~~~-~~~~~~~~~~~~~~l~~~~g~~~~~~~lS-~G~s~-~~~~a~~~g~t~VR~G~~ifg~~~ 135 (142)
+.+.++|+..+. .-+. .....+++.++.+...+. |.+ ++..- .|.+. +.....+.|.+.+=+|++||+...
T Consensus 135 ~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~-~~~--~~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a~d 209 (230)
T 1tqj_A 135 CDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDER-GLD--PWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPN 209 (230)
T ss_dssp CSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHH-TCC--CEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSC
T ss_pred CCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhc-CCC--CcEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCC
Confidence 456667775543 2222 235566777777666554 654 44443 34443 233446779999999999998543
No 50
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=70.70 E-value=33 Score=26.50 Aligned_cols=99 Identities=13% Similarity=0.197 Sum_probs=56.1
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CCC--CcHHHHHHHHHHHHHHHHHhCCCCC
Q 032365 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DYT--STPENFRTLLNCRAEVCKALGMAED 101 (142)
Q Consensus 25 ~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~~--~~~~~~~~~~~~~~~l~~~~g~~~~ 101 (142)
..+|.|++..... ..-|++.++..++++.+. +.. + ..|..+... +.. +....+ ...+...+++..+
T Consensus 209 ~~pv~vris~~~~-~~~g~~~~~~~~~a~~l~-~~G-v--d~i~v~~~~~~~~~~~~~~~~--~~~~~~~ir~~~~---- 277 (338)
T 1z41_A 209 DGPLFVRVSASDY-TDKGLDIADHIGFAKWMK-EQG-V--DLIDCSSGALVHADINVFPGY--QVSFAEKIREQAD---- 277 (338)
T ss_dssp CSCEEEEEECCCC-STTSCCHHHHHHHHHHHH-HTT-C--CEEEEECCCSSCCCCCCCTTT--THHHHHHHHHHHC----
T ss_pred CCcEEEEecCccc-CCCCCCHHHHHHHHHHHH-HcC-C--CEEEEecCccccCCCCCCccc--hHHHHHHHHHHCC----
Confidence 4678889887642 235888888999999887 542 2 223323221 100 000000 1233444555443
Q ss_pred CCeEEecCchh---HHHHHHcC-CcEEecCccccCCC
Q 032365 102 QCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPR 134 (142)
Q Consensus 102 ~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~ 134 (142)
++.+..|+-.+ ...+++.| .+.|-+|+.++.+.
T Consensus 278 iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nP 314 (338)
T 1z41_A 278 MATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDP 314 (338)
T ss_dssp CEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCT
T ss_pred CCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCc
Confidence 45665565433 33346777 89999999998763
No 51
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=61.85 E-value=8.3 Score=31.04 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=44.7
Q ss_pred eEEEEEeCCCCCCccCCC--hh--hHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHHHHHHHHHHHHHHhCCCCC-
Q 032365 27 KVLVQVNTSGEESKSGID--PS--SCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAEVCKALGMAED- 101 (142)
Q Consensus 27 ~v~I~v~tg~~~~R~G~~--~~--~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~- 101 (142)
....++|-- |.++|++ |+ ...+..+.+. .....-+..+||=.-..+++.....++|.++.+..++. |+..-
T Consensus 17 ~~~~~~~~~--M~~LGiSvYp~~~~~~~~~~Yi~-~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~-g~~vi~ 92 (385)
T 1x7f_A 17 NLYFQSNAM--ERKLGISLYPEHSTKEKDMAYIS-AAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDN-NMEVIL 92 (385)
T ss_dssp --------C--CCEEEEEECGGGSCHHHHHHHHH-HHHTTTEEEEEEEECCC--------HHHHHHHHHHHHT-TCEEEE
T ss_pred ChhhhHHHH--HHheEEEEcCCCCCHHHHHHHHH-HHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHC-CCEEEE
Confidence 344567766 8899974 22 2344444454 44456677887733222222334566677777766654 65310
Q ss_pred ---CCeE-EecCc-hhHHHHHHcCCcEEecCc
Q 032365 102 ---QCEL-SMGMS-GDFEQAIEMGSTSVRIGS 128 (142)
Q Consensus 102 ---~~~l-S~G~s-~~~~~a~~~g~t~VR~G~ 128 (142)
+..+ .+|.| .++....+.|.+-+|.=-
T Consensus 93 DVsp~~~~~Lg~s~~dl~~f~~lGi~gLRLD~ 124 (385)
T 1x7f_A 93 DVAPAVFDQLGISYSDLSFFAELGADGIRLDV 124 (385)
T ss_dssp EECTTCC------CCCTHHHHHHTCSEEEESS
T ss_pred ECCHHHHHHcCCCHHHHHHHHHcCCCEEEEcC
Confidence 1111 34666 455556788999999743
No 52
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=54.14 E-value=65 Score=24.00 Aligned_cols=111 Identities=10% Similarity=-0.029 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeC--------CCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHH
Q 032365 9 KIANHLDKAVSNLGRKPLKVLVQVNT--------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPE 80 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~t--------g~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~ 80 (142)
..+..+.+.|.+.| ..+-+|+-... |.+.=..|.+++++...++......|+. .|+.-|.+.-.....
T Consensus 39 p~~~~~a~~A~~~G-~EvllHlPMep~~~~~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a--~GvnNHmGS~~T~~~- 114 (245)
T 2nly_A 39 EHSTKQAEIAQAAG-LEVIVHMPLEPKKGKISWLGPSGITSNLSVGEVKSRVRKAFDDIPYA--VGLNNHMGSKIVENE- 114 (245)
T ss_dssp TTHHHHHHHHHHTT-CEEEEEEEECCC--------CCCBCTTCCHHHHHHHHHHHHHHSTTC--CEEEEEECTTGGGCH-
T ss_pred CCHHHHHHHHHHCC-CEEEEEcCCCCCCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHCCCc--EEEecccccchhcCH-
Confidence 34566777777777 55444443322 2112234678888877776553289975 699888775332222
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCeE---EecCchhHHHHHHcCCcEEecCccc
Q 032365 81 NFRTLLNCRAEVCKALGMAEDQCEL---SMGMSGDFEQAIEMGSTSVRIGSTI 130 (142)
Q Consensus 81 ~~~~~~~~~~~l~~~~g~~~~~~~l---S~G~s~~~~~a~~~g~t~VR~G~~i 130 (142)
+.+..+.+.|++. |+ -.+ +.+.|-....|.+.|.-.++--.+|
T Consensus 115 --~~m~~vm~~l~~~-gL----~fvDS~Ts~~S~a~~~A~~~gvp~~~rdvFL 160 (245)
T 2nly_A 115 --KIMRAILEVVKEK-NA----FIIDSGTSPHSLIPQLAEELEVPYATRSIFL 160 (245)
T ss_dssp --HHHHHHHHHHHHT-TC----EEEECCCCSSCSHHHHHHHTTCCEEECCEES
T ss_pred --HHHHHHHHHHHHC-CC----EEEcCCCCcccHHHHHHHHcCCCeEEeeEEC
Confidence 3455566667765 64 234 3345555667788888777655543
No 53
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=53.15 E-value=54 Score=26.34 Aligned_cols=103 Identities=10% Similarity=0.008 Sum_probs=56.3
Q ss_pred CCceEEEEEeCCCCCC-ccCCChhhHHHHHHHHHcc---CCCeeEeeEee----ecCCCCCCcHHHHHHHHHHHHHHHHH
Q 032365 24 KPLKVLVQVNTSGEES-KSGIDPSSCLGIVEHVRLR---CPNLEFSGLMT----IGMPDYTSTPENFRTLLNCRAEVCKA 95 (142)
Q Consensus 24 ~~~~v~I~v~tg~~~~-R~G~~~~~~~~l~~~i~~~---~~~l~l~Gl~t----h~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (142)
..++|.+++....... ..|++.++..++++.+. + ...|.+.+--. +........ .. ..+.+.+++.
T Consensus 241 ~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~-~~~Gvd~I~vs~g~~~~~~~~~~~~g~~-~~----~~~a~~Ik~~ 314 (419)
T 3l5a_A 241 DNFILGFRATPEETRGSDLGYTIDEFNQLIDWVM-DVSNIQYLAIASWGRHIYQNTSRTPGDH-FG----RPVNQIVYEH 314 (419)
T ss_dssp TTCEEEEEECSCEEETTEEEECHHHHHHHHHHHH-HHSCCCCEEECCTTCCGGGCBCCCSSTT-TT----SBHHHHHHHH
T ss_pred CCeeEEEecccccccCCCCCCCHHHHHHHHHHHH-hhcCCcEEEEeeCCccccccccCCCCcc-cc----HHHHHHHHHH
Confidence 5788988998752111 13788899999999987 5 44555443210 000000000 00 1223344444
Q ss_pred hCCCCCCCeEEecCchhHH---HHHHcCCcEEecCccccCCCc
Q 032365 96 LGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIFGPRE 135 (142)
Q Consensus 96 ~g~~~~~~~lS~G~s~~~~---~a~~~g~t~VR~G~~ifg~~~ 135 (142)
.+-+ ++.+..|+-.+.. .+++. .|+|-.|+.++.+-.
T Consensus 315 v~~~--iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~IanPd 354 (419)
T 3l5a_A 315 LAGR--IPLIASGGINSPESALDALQH-ADMVGMSSPFVTEPD 354 (419)
T ss_dssp HTTS--SCEEECSSCCSHHHHHHHGGG-CSEEEESTHHHHCTT
T ss_pred cCCC--CeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHHHCcH
Confidence 3322 4667666633322 34566 999999999876643
No 54
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=52.76 E-value=47 Score=24.33 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=55.0
Q ss_pred HHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecC-CCCCC-cHHHHHHHHHHHHHHHH
Q 032365 17 AVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM-PDYTS-TPENFRTLLNCRAEVCK 94 (142)
Q Consensus 17 ~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~-~~~~~-~~~~~~~~~~~~~~l~~ 94 (142)
..++.| .++-|-+|.++ +.+ .++.+. .+..+.+.-+||..+ .+-+. .....+++.++.+.+.
T Consensus 109 ~i~~~G---~k~gvalnp~t-------p~~----~~~~~l-~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~- 172 (227)
T 1tqx_A 109 EIRDNN---LWCGISIKPKT-------DVQ----KLVPIL-DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK- 172 (227)
T ss_dssp HHHTTT---CEEEEEECTTS-------CGG----GGHHHH-TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT-
T ss_pred HHHHcC---CeEEEEeCCCC-------cHH----HHHHHh-hcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc-
Confidence 556666 34555666663 122 233344 322466777888443 33333 2355666666544331
Q ss_pred HhCCCCCCCeEEecCchh-HHHHHHcCCcEEecCccccCCCcc
Q 032365 95 ALGMAEDQCELSMGMSGD-FEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 95 ~~g~~~~~~~lS~G~s~~-~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
++ .-.+..|.+.+ .....+.|.+.+=.|++||+...+
T Consensus 173 --~~---~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~ 210 (227)
T 1tqx_A 173 --NL---NIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDP 210 (227)
T ss_dssp --TC---EEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSH
T ss_pred --CC---eEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCH
Confidence 21 12335565544 334568899999999999985443
No 55
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=52.06 E-value=26 Score=29.67 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=63.4
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC--------CCCCcHHHHHHH
Q 032365 14 LDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP--------DYTSTPENFRTL 85 (142)
Q Consensus 14 l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~--------~~~~~~~~~~~~ 85 (142)
+....+..| ..++|.++++... ..+.|++.++..++++.+. +. +.+..+ |.+. .+.+ ..+ +
T Consensus 214 ~~avr~~~g-~~~~v~~r~s~~~-~~~~g~~~~~~~~~~~~l~-~~--~d~~~v--~~~~~~~~~~~~~~~~--~~~--~ 282 (690)
T 3k30_A 214 LEDTLDECA-GRAAVACRITVEE-EIDGGITREDIEGVLRELG-EL--PDLWDF--AMGSWEGDSVTSRFAP--EGR--Q 282 (690)
T ss_dssp HHHHHHHHT-TSSEEEEEEECCC-CSTTSCCHHHHHHHHHHHT-TS--SSEEEE--ECSCHHHHTCCTTTCC--TTT--T
T ss_pred HHHHHHHhC-CCceEEEEECccc-cCCCCCCHHHHHHHHHHHH-hh--cCEEEE--ecccccccCCCCccCC--ccc--c
Confidence 444444446 6788999998764 3467999989999999887 52 332222 2211 0001 000 1
Q ss_pred HHHHHHHHHHhCCCCCCCeEEecCchhH---HHHHHcC-CcEEecCccccCCCccc
Q 032365 86 LNCRAEVCKALGMAEDQCELSMGMSGDF---EQAIEMG-STSVRIGSTIFGPREYA 137 (142)
Q Consensus 86 ~~~~~~l~~~~g~~~~~~~lS~G~s~~~---~~a~~~g-~t~VR~G~~ifg~~~~~ 137 (142)
..+...+++.. + ++.+..|.-.+. ..+++.| .|+|-.|..++.+-...
T Consensus 283 ~~~~~~i~~~~--~--~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~ 334 (690)
T 3k30_A 283 EEFVAGLKKLT--T--KPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLP 334 (690)
T ss_dssp HHHHTTSGGGC--S--SCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHH
T ss_pred HHHHHHHHHHc--C--CeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHH
Confidence 23344455542 3 566766654332 3346776 79999999998875443
No 56
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=50.64 E-value=57 Score=24.48 Aligned_cols=44 Identities=14% Similarity=0.065 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCCCeEEecCchhH---HHHHHcCCcEEecCccccC
Q 032365 87 NCRAEVCKALGMAEDQCELSMGMSGDF---EQAIEMGSTSVRIGSTIFG 132 (142)
Q Consensus 87 ~~~~~l~~~~g~~~~~~~lS~G~s~~~---~~a~~~g~t~VR~G~~ifg 132 (142)
+++..+++..+.+ ++.+..|+-.+. ..+...|.+.|.+|+.++.
T Consensus 230 ~~i~~v~~~~~~~--ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 230 ANVRAFYTRLKPE--IQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp HHHHHHHTTSCTT--SEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHHHHHhcCCC--CCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 4445555442213 566655544333 3345789999999999884
No 57
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=50.35 E-value=91 Score=24.52 Aligned_cols=94 Identities=13% Similarity=0.090 Sum_probs=50.9
Q ss_pred CceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC-CC----C-----C---c--HHHHHHHHHHH
Q 032365 25 PLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP-DY----T-----S---T--PENFRTLLNCR 89 (142)
Q Consensus 25 ~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~-~~----~-----~---~--~~~~~~~~~~~ 89 (142)
.++|.+++-.+ ++.+++.++++.+. +.. +.||..|... +. . . . ......-.+++
T Consensus 220 ~~Pv~vKi~p~-------~~~~~~~~ia~~~~-~aG---adgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v 288 (367)
T 3zwt_A 220 RPAVLVKIAPD-------LTSQDKEDIASVVK-ELG---IDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTI 288 (367)
T ss_dssp CCEEEEEECSC-------CCHHHHHHHHHHHH-HHT---CCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHH
T ss_pred CceEEEEeCCC-------CCHHHHHHHHHHHH-HcC---CCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHH
Confidence 47888887543 55677888888775 331 3334333211 00 0 0 0 01122223344
Q ss_pred HHHHHHhCCCCCCCeEEecCchhHH---HHHHcCCcEEecCcccc
Q 032365 90 AEVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIF 131 (142)
Q Consensus 90 ~~l~~~~g~~~~~~~lS~G~s~~~~---~a~~~g~t~VR~G~~if 131 (142)
..+++..+-+ ++.+..|+-.+.. .+...|.+.|.+|+.++
T Consensus 289 ~~i~~~v~~~--ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l 331 (367)
T 3zwt_A 289 REMYALTQGR--VPIIGVGGVSSGQDALEKIRAGASLVQLYTALT 331 (367)
T ss_dssp HHHHHHTTTC--SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHcCCC--ceEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 4455543323 6777666544433 34678999999999983
No 58
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=48.91 E-value=86 Score=23.83 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=50.5
Q ss_pred CCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecC----CCC------CC---c--HHHHHHHHHH
Q 032365 24 KPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGM----PDY------TS---T--PENFRTLLNC 88 (142)
Q Consensus 24 ~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~----~~~------~~---~--~~~~~~~~~~ 88 (142)
..++|.+++..+ ++.+++.++++.+. +.. +.||..+.. .+. .. . .........+
T Consensus 210 ~~~Pv~vKi~~~-------~~~~~~~~~a~~l~-~~G---vd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~ 278 (336)
T 1f76_A 210 KYVPIAVKIAPD-------LSEEELIQVADSLV-RHN---IDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEI 278 (336)
T ss_dssp SCCCEEEECCSC-------CCHHHHHHHHHHHH-HTT---CSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHH
T ss_pred ccCceEEEecCC-------CCHHHHHHHHHHHH-HcC---CcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHH
Confidence 467888886543 56678888888886 542 333332211 010 00 0 0001112234
Q ss_pred HHHHHHHhCCCCCCCeEEecCchhHH---HHHHcCCcEEecCccccC
Q 032365 89 RAEVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIFG 132 (142)
Q Consensus 89 ~~~l~~~~g~~~~~~~lS~G~s~~~~---~a~~~g~t~VR~G~~ifg 132 (142)
+..+++..+-+ ++.+..|+-.+.. .+...|.+.|.+|+.+..
T Consensus 279 i~~i~~~~~~~--ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 279 IRRLSLELNGR--LPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp HHHHHHHHTTS--SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHhCCC--CCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 44445443222 5667555443333 346789999999998654
No 59
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=48.18 E-value=22 Score=28.54 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHH
Q 032365 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIV 52 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~ 52 (142)
+.++.|.+.|.+.| +.|.+.|+... ..++|++++++..+.
T Consensus 74 ~~~~~l~~~a~~~g---~~vi~DVsp~~-~~~Lg~s~~dl~~f~ 113 (385)
T 1x7f_A 74 AEFKEIINHAKDNN---MEVILDVAPAV-FDQLGISYSDLSFFA 113 (385)
T ss_dssp HHHHHHHHHHHHTT---CEEEEEECTTC-C------CCCTHHHH
T ss_pred HHHHHHHHHHHHCC---CEEEEECCHHH-HHHcCCCHHHHHHHH
Confidence 55667777788776 88999999876 789999876655443
No 60
>3epw_A IAG-nucleoside hydrolase; rossmann fold, active site loops, aromatic stacking; HET: JMQ; 1.30A {Trypanosoma vivax} SCOP: c.70.1.1 PDB: 3epx_A* 1hoz_A 1hp0_A* 2ff1_A* 2ff2_A* 1kic_A* 1kie_A* 1r4f_A* 3b9g_A*
Probab=46.42 E-value=41 Score=26.15 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=29.1
Q ss_pred cCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCC-eeEeeEeeecCC
Q 032365 21 LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPN-LEFSGLMTIGMP 73 (142)
Q Consensus 21 ~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~-l~l~Gl~th~~~ 73 (142)
+| ..++|.|..|+| .+++..++-.+ ..|. +++.||-|.+++
T Consensus 10 ~~-~~~~vilD~DpG---------iDDa~AL~~al--~~p~~iel~gITtv~GN 51 (338)
T 3epw_A 10 HG-SAKNVVLDHDGN---------LDDFVAMVLLA--SNTEKVRLIGALCTDAD 51 (338)
T ss_dssp ----CEEEEEEECCS---------HHHHHHHHHHH--HCTTTEEEEEEEECSSS
T ss_pred cC-ccceEEEECCCC---------hHHHHHHHHHH--hCCCCeEEEEEEEeCCC
Confidence 45 678887776666 46777776665 4688 999999998875
No 61
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=45.51 E-value=1.2e+02 Score=24.55 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=52.0
Q ss_pred Cce-EEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC----CCC-----C--c--HHHHHHHHHHHH
Q 032365 25 PLK-VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP----DYT-----S--T--PENFRTLLNCRA 90 (142)
Q Consensus 25 ~~~-v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~----~~~-----~--~--~~~~~~~~~~~~ 90 (142)
..+ |.|+|-.+ ++.+++.++++.+. +.. +.||..+... +.. . . ...+..-.+++.
T Consensus 268 ~~P~V~VKi~pd-------~~~~~i~~iA~~a~-~aG---aDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~ 336 (415)
T 3i65_A 268 KKPLVFVKLAPD-------LNQEQKKEIADVLL-ETN---IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFIC 336 (415)
T ss_dssp SCCEEEEEECSC-------CCHHHHHHHHHHHH-HHT---CSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHH
T ss_pred CCCeEEEEecCC-------CCHHHHHHHHHHHH-HcC---CcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHH
Confidence 467 88887654 35567888888776 332 3344333211 100 0 0 011222233344
Q ss_pred HHHHHhCCCCCCCeEEecCchhHH---HHHHcCCcEEecCccccCC
Q 032365 91 EVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIFGP 133 (142)
Q Consensus 91 ~l~~~~g~~~~~~~lS~G~s~~~~---~a~~~g~t~VR~G~~ifg~ 133 (142)
++.+..+.+ ++.+-.|+-.+.. .+...|.+.|.+|+.++..
T Consensus 337 ~v~~~v~~~--iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~ 380 (415)
T 3i65_A 337 EMYNYTNKQ--IPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN 380 (415)
T ss_dssp HHHHHTTTC--SCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHH
T ss_pred HHHHHhCCC--CCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc
Confidence 444443323 6777666544444 3467899999999998754
No 62
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=41.14 E-value=85 Score=23.63 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCC-CCccCCChhhHHHHHHHHHccCCCeeEeeEe-eecCCCCCCcHHHHHH
Q 032365 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGE-ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM-TIGMPDYTSTPENFRT 84 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~-~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~-th~~~~~~~~~~~~~~ 84 (142)
+++.+...-+.+++.| ..+.+.+-.-.|.+ .+| .+++.+.++++.+. +.. .....|. |.+. -...++.
T Consensus 119 ~l~~~~~~i~~a~~~G-~~v~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~-~~G-a~~i~l~DT~G~----~~P~~~~- 188 (298)
T 2cw6_A 119 SFQRFDAILKAAQSAN-ISVRGYVSCALGCPYEGK--ISPAKVAEVTKKFY-SMG-CYEISLGDTIGV----GTPGIMK- 188 (298)
T ss_dssp HHHHHHHHHHHHHHTT-CEEEEEEETTTCBTTTBS--CCHHHHHHHHHHHH-HTT-CSEEEEEETTSC----CCHHHHH-
T ss_pred HHHHHHHHHHHHHHCC-CeEEEEEEEEeeCCcCCC--CCHHHHHHHHHHHH-HcC-CCEEEecCCCCC----cCHHHHH-
Confidence 3455566666677766 33332221112211 122 46788888888876 553 3333332 1221 1233322
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEecCc-----hhHHHHHHcCCcEEec
Q 032365 85 LLNCRAEVCKALGMAEDQCELSMGMS-----GDFEQAIEMGSTSVRI 126 (142)
Q Consensus 85 ~~~~~~~l~~~~g~~~~~~~lS~G~s-----~~~~~a~~~g~t~VR~ 126 (142)
+++..+++..+ .. ...+++.++ .....|.+.|.+.|-.
T Consensus 189 --~lv~~l~~~~~-~~-~i~~H~Hn~~Gla~An~laA~~aGa~~vd~ 231 (298)
T 2cw6_A 189 --DMLSAVMQEVP-LA-ALAVHCHDTYGQALANTLMALQMGVSVVDS 231 (298)
T ss_dssp --HHHHHHHHHSC-GG-GEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred --HHHHHHHHhCC-CC-eEEEEECCCCchHHHHHHHHHHhCCCEEEe
Confidence 23334444432 11 234554332 2234567888887764
No 63
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=40.67 E-value=68 Score=24.21 Aligned_cols=38 Identities=13% Similarity=0.350 Sum_probs=27.5
Q ss_pred eEEEEEe-----------CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 27 KVLVQVN-----------TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 27 ~v~I~v~-----------tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
+|+|.+| ||+ ....|+++.++..+++.+. .. +.++.|+
T Consensus 196 ~vylSiDiDvlDpa~aPgtgt-p~pgGlt~~e~~~~l~~l~-~~-~~~vvg~ 244 (287)
T 3lhl_A 196 NIYLTIDLDVLDASVFPGTGT-PEPGGVNYREFQEIFKIIK-NS-NINIVGC 244 (287)
T ss_dssp EEEEEEEGGGBCTTTCCSBSS-CCSSCBCHHHHTHHHHHHH-TS-CCEEEEE
T ss_pred cEEEEEecCcCCHhhCCCCCC-CCCCCCCHHHHHHHHHHHH-hC-CCCEEEE
Confidence 5666666 444 5678999999999998884 22 4577787
No 64
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=39.07 E-value=88 Score=23.84 Aligned_cols=14 Identities=7% Similarity=0.126 Sum_probs=8.9
Q ss_pred CChhhHHHHHHHHH
Q 032365 43 IDPSSCLGIVEHVR 56 (142)
Q Consensus 43 ~~~~~~~~l~~~i~ 56 (142)
.+++.+.++++.+.
T Consensus 154 ~~~~~~~~~~~~~~ 167 (307)
T 1ydo_A 154 VPIEQVIRLSEALF 167 (307)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 45666677776664
No 65
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=38.80 E-value=21 Score=20.89 Aligned_cols=27 Identities=7% Similarity=0.218 Sum_probs=21.3
Q ss_pred CCccCCChhhHHHHHHHHHccCCCeeEe
Q 032365 38 ESKSGIDPSSCLGIVEHVRLRCPNLEFS 65 (142)
Q Consensus 38 ~~R~G~~~~~~~~l~~~i~~~~~~l~l~ 65 (142)
..++|++.+++..+++.+. +=.-|+++
T Consensus 32 a~kygV~kdeV~~~LrrLe-~KGLI~le 58 (59)
T 2xvc_A 32 SKVYGVEKQEVVKLLEALK-NKGLIAVE 58 (59)
T ss_dssp HHHHCCCHHHHHHHHHHHH-HTTSEEEE
T ss_pred HHHhCCCHHHHHHHHHHHH-HCCCeecc
Confidence 4799999999999999987 55455554
No 66
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=37.97 E-value=77 Score=27.02 Aligned_cols=114 Identities=11% Similarity=0.011 Sum_probs=61.1
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCCCccCCC-hhhHHHHHHHHHccC-CCeeEeeEee---ecCCCCCC--cHHHHHHHH
Q 032365 14 LDKAVSNLGRKPLKVLVQVNTSGEESKSGID-PSSCLGIVEHVRLRC-PNLEFSGLMT---IGMPDYTS--TPENFRTLL 86 (142)
Q Consensus 14 l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~-~~~~~~l~~~i~~~~-~~l~l~Gl~t---h~~~~~~~--~~~~~~~~~ 86 (142)
+....+..| ...+|.+++........-|++ .++..++++.+. +. .-|.+.+... +... ... ....+ ..
T Consensus 206 v~avr~~vg-~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l~-~~~d~~~v~~g~~~~~~~~~-~~~~~~~~~~--~~ 280 (729)
T 1o94_A 206 LEKVKHAVG-SDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMAD-SLVDMWDITIGDIAEWGEDA-GPSRFYQQGH--TI 280 (729)
T ss_dssp HHHHHHHHT-TTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHG-GGCSEEEEEECCSTTGGGTS-CCTTTCCTTT--TH
T ss_pred HHHHHHHhC-CCceEEEEEccccCcCCCCCCchHHHHHHHHHHH-hhcCEEEEeeeccccccccc-CCccccCccc--cH
Confidence 344444445 567888899875333345887 578888888887 52 2233333210 0000 000 00110 12
Q ss_pred HHHHHHHHHhCCCCCCCeEEecCchh---HHHHHHcC-CcEEecCccccCCCcc
Q 032365 87 NCRAEVCKALGMAEDQCELSMGMSGD---FEQAIEMG-STSVRIGSTIFGPREY 136 (142)
Q Consensus 87 ~~~~~l~~~~g~~~~~~~lS~G~s~~---~~~a~~~g-~t~VR~G~~ifg~~~~ 136 (142)
.+...+++.. + ++.+..|.-.+ ...+++.| .|+|-.|..++.+-..
T Consensus 281 ~~~~~i~~~~--~--~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~ 330 (729)
T 1o94_A 281 PWVKLVKQVS--K--KPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFL 330 (729)
T ss_dssp HHHHHHHTTC--S--SCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTH
T ss_pred HHHHHHHHHC--C--CEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchH
Confidence 3444555542 3 56676664433 33346776 7999999998876543
No 67
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=36.17 E-value=1.2e+02 Score=22.89 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeC--CCCCCccCCChhhHHHHHHHHHccCCCeeEeeEe-eecCCCCCCcHHHHH
Q 032365 7 NEKIANHLDKAVSNLGRKPLKVLVQVNT--SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM-TIGMPDYTSTPENFR 83 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~t--g~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~-th~~~~~~~~~~~~~ 83 (142)
+++.+...-+.+.+.| . .|-..|-+ +.+ .-.-.+++.+.++++.+. +. +.....|- ||+. ....+.
T Consensus 122 ~l~~~~~~v~~a~~~G-~--~V~~~l~~~~~~e-~~~~~~~~~~~~~~~~~~-~~-G~d~i~l~DT~G~----~~P~~~- 190 (302)
T 2ftp_A 122 SLERFVPVLEAARQHQ-V--RVRGYISCVLGCP-YDGDVDPRQVAWVARELQ-QM-GCYEVSLGDTIGV----GTAGAT- 190 (302)
T ss_dssp HHHHHHHHHHHHHHTT-C--EEEEEEECTTCBT-TTBCCCHHHHHHHHHHHH-HT-TCSEEEEEESSSC----CCHHHH-
T ss_pred HHHHHHHHHHHHHHCC-C--eEEEEEEEEeeCC-cCCCCCHHHHHHHHHHHH-Hc-CCCEEEEeCCCCC----cCHHHH-
Confidence 4555666667777766 3 33223322 111 111156788888888876 54 23333342 2332 123222
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEe----cCc-hhHHHHHHcCCcEEecCccccCCCcc
Q 032365 84 TLLNCRAEVCKALGMAEDQCELSM----GMS-GDFEQAIEMGSTSVRIGSTIFGPREY 136 (142)
Q Consensus 84 ~~~~~~~~l~~~~g~~~~~~~lS~----G~s-~~~~~a~~~g~t~VR~G~~ifg~~~~ 136 (142)
.++++.+++..+ +. ...+|+ |+. .....|++.|.+.|-.-..=+|.-||
T Consensus 191 --~~lv~~l~~~~~-~~-~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~ 244 (302)
T 2ftp_A 191 --RRLIEAVASEVP-RE-RLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPY 244 (302)
T ss_dssp --HHHHHHHTTTSC-GG-GEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGG
T ss_pred --HHHHHHHHHhCC-CC-eEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCC
Confidence 223333444331 11 234554 332 22345678898888665554554343
No 68
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=36.05 E-value=1.5e+02 Score=23.09 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCeEEecCchhHH---HHHHcCCcEEecCccccCCC
Q 032365 87 NCRAEVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIFGPR 134 (142)
Q Consensus 87 ~~~~~l~~~~g~~~~~~~lS~G~s~~~~---~a~~~g~t~VR~G~~ifg~~ 134 (142)
+++.++++. ..+ ++.+..|+-.+.. .+...|.+.|.+|+.++.+.
T Consensus 266 ~~i~~v~~~-~~~--ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~G 313 (354)
T 4ef8_A 266 ANINAFYRR-CPG--KLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEG 313 (354)
T ss_dssp HHHHHHHHH-CTT--SEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHC
T ss_pred HHHHHHHHh-CCC--CCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhC
Confidence 334445554 323 5667666543333 34678999999999998753
No 69
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein, hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Probab=35.91 E-value=1.4e+02 Score=22.49 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=22.7
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+. ...+ +.|+
T Consensus 240 tgt-p~pgGlt~~e~~~~l~~l~-~~~~--vvg~ 269 (306)
T 1pq3_A 240 TGT-PVVGGLTYREGMYIAEEIH-NTGL--LSAL 269 (306)
T ss_dssp BSS-CCSSCBCHHHHHHHHHHHH-TTTC--EEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHHH-cCCC--EEEE
Confidence 454 5678999999999999997 6544 5555
No 70
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=35.85 E-value=1.4e+02 Score=22.44 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeC--------CCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHH
Q 032365 10 IANHLDKAVSNLGRKPLKVLVQVNT--------SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPEN 81 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~t--------g~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~ 81 (142)
.+..+.+.|.+.| ..+-+|+-... |.+.=+.|.+++++...++......|+. .|+.-|.+.-....
T Consensus 67 ~~~~~a~~A~~~G-~EvllHlPMep~~~p~~~~gp~~L~~~~s~~ei~~~l~~al~~vP~a--~GvnNHmGS~~T~~--- 140 (261)
T 2qv5_A 67 SLQRWMQDARREG-HEILLQIPLEPFGYPGTNPGPDTLLAGDPAKVNIDRLHRSMAKITNY--TGVMNYLGGRFLAE--- 140 (261)
T ss_dssp SHHHHHHHHHHHT-CCEEEEEEECCTTTTTSCCCTTCBCTTSCHHHHHHHHHHHHTTCCCC--SEEEEEECTTGGGC---
T ss_pred CHHHHHHHHHHCC-CEEEEECCCCCCCCCCCCCCcCcCcCCCCHHHHHHHHHHHHHHCCCc--EEEecccccchhcC---
Confidence 3455677777777 55555554432 2111234567788877776553388864 69988877533222
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeE---EecCchhHHHHHHcCCcEEecCcc
Q 032365 82 FRTLLNCRAEVCKALGMAEDQCEL---SMGMSGDFEQAIEMGSTSVRIGST 129 (142)
Q Consensus 82 ~~~~~~~~~~l~~~~g~~~~~~~l---S~G~s~~~~~a~~~g~t~VR~G~~ 129 (142)
-+.+..+.+.|++. |+ -.+ +.+.|-....|.+.|.-.++.-.+
T Consensus 141 ~~~M~~vm~~L~~~-gL----~FlDS~Ts~~S~a~~~A~~~gvp~~~rdvF 186 (261)
T 2qv5_A 141 QSALEPVMRDIGKR-GL----LFLDDGSSAQSLSGGIAKAISAPQGFADVL 186 (261)
T ss_dssp HHHHHHHHHHHHHT-TC----EEEECSCCTTCCHHHHHHHHTCCEEECSEE
T ss_pred HHHHHHHHHHHHHC-CC----EEEcCCCCcccHHHHHHHHcCCCeEEeeee
Confidence 33355566667765 64 345 223344566777888877765544
No 71
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=35.57 E-value=16 Score=25.76 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=25.3
Q ss_pred CCCCCccCCChhhHHHHHHHHHccCCCeeEeeEe
Q 032365 35 SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLM 68 (142)
Q Consensus 35 g~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~ 68 (142)
|.-|-++|++++++.++++.+. +. +=++.|+.
T Consensus 93 GLAMPk~~v~~e~v~~li~ki~-~~-~~kiiGvC 124 (157)
T 2r47_A 93 GLSMPGIGSDIEDVKKLVEDAL-EE-GGELMGLC 124 (157)
T ss_dssp GGGSTTTSCCHHHHHHHHHHHE-EE-EEEEEEEE
T ss_pred cccCCCCCCCHHHHHHHHHHhh-cC-CCCEEEEE
Confidence 5558999999999999999884 33 35688883
No 72
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=34.78 E-value=73 Score=25.55 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=37.4
Q ss_pred eEecCCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeee
Q 032365 2 VEGVGNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTI 70 (142)
Q Consensus 2 i~svds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th 70 (142)
+.|+.+..+++.+-+++++.+ .|+-|.+-++.++ . +.|-+++ +++..+. .+. +...||=|+
T Consensus 158 ~ETi~~~~Eakaa~~a~~~~~-lPv~iS~T~~~~G-~-l~G~~~~---~~~~~l~-~~~-~~avGvNC~ 218 (406)
T 1lt8_A 158 AEYFEHVEEAVWAVETLIASG-KPVAATMAIGPEG-D-LHGVPPG---EAAVRLV-KAG-ASIIGVNCH 218 (406)
T ss_dssp ECCCSCHHHHHHHHHHHGGGT-SCEEEEECCBTTB-C-TTCCCHH---HHHHHHH-TTT-CSEEEEESS
T ss_pred EcccCCHHHHHHHHHHHHHhC-CcEEEEEEECCCC-C-cCCCcHH---HHHHHhh-cCC-CCEEEecCC
Confidence 568899999999888887766 4544444443221 2 5665554 4455554 443 667777554
No 73
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=34.69 E-value=1.3e+02 Score=21.62 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCCceEEEEE-eCCCCCCccCCChhhHHHHHHHHHccCCCeeE
Q 032365 11 ANHLDKAVSNLGRKPLKVLVQV-NTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 11 ~~~l~~~a~~~~~~~~~v~I~v-~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l 64 (142)
+..+.+.|++.| +.+.|+- |.-...+.+.-+++++.++++.+ ..|++.+
T Consensus 133 l~~l~~~a~~~G---v~l~lE~~n~~~~~~~~~~~~~~~~~l~~~v--~~~~vg~ 182 (269)
T 3ngf_A 133 FRYAADKLAPHG---ITVLVEPLNTRNMPGYFIVHQLEAVGLVKRV--NRPNVAV 182 (269)
T ss_dssp HHHHHHHHGGGT---CEEEECCCCTTTSTTBSCCCHHHHHHHHHHH--CCTTEEE
T ss_pred HHHHHHHHHHcC---CEEEEeeCCcccCccchhcCHHHHHHHHHHh--CCCCCCe
Confidence 344555555555 5565553 21101133444677888888877 3466543
No 74
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=34.56 E-value=90 Score=26.16 Aligned_cols=113 Identities=5% Similarity=0.070 Sum_probs=61.6
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEee--ecCC-CC-CC-cHHHHHHHHH
Q 032365 13 HLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMT--IGMP-DY-TS-TPENFRTLLN 87 (142)
Q Consensus 13 ~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~t--h~~~-~~-~~-~~~~~~~~~~ 87 (142)
.+....+..| ...+|.+++.... ....|.++++..++++.+. +. ++.+..+.. +.+. .. .. .... .+..
T Consensus 197 iv~avr~~vG-~~~~v~vrls~~~-~~~~g~~~~~~~~~a~~l~-~~-g~d~i~v~~~~~~~~~~~~~~~~~~~--~~~~ 270 (671)
T 1ps9_A 197 VVRAVRERVG-NDFIIIYRLSMLD-LVEDGGTFAETVELAQAIE-AA-GATIINTGIGWHEARIPTIATPVPRG--AFSW 270 (671)
T ss_dssp HHHHHHHHHC-SSSEEEEEEEEEC-CSTTCCCHHHHHHHHHHHH-HH-TCSEEEEEECBTTCSSCSSSTTSCTT--TTHH
T ss_pred HHHHHHHHcC-CCceEEEEECccc-cCCCCCCHHHHHHHHHHHH-hc-CCCEEEcCCCccccccccccccCCcc--hHHH
Confidence 3444444456 5678888888652 2345888888889998886 43 233322221 1110 00 00 0000 1123
Q ss_pred HHHHHHHHhCCCCCCCeEEecCc--hh-HHHHHHcC-CcEEecCccccCCCc
Q 032365 88 CRAEVCKALGMAEDQCELSMGMS--GD-FEQAIEMG-STSVRIGSTIFGPRE 135 (142)
Q Consensus 88 ~~~~l~~~~g~~~~~~~lS~G~s--~~-~~~a~~~g-~t~VR~G~~ifg~~~ 135 (142)
+...+++.. + ++.+..|.- +. ...+.+.| .|.|-.|+.++.+..
T Consensus 271 ~~~~i~~~~--~--iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~ 318 (671)
T 1ps9_A 271 VTRKLKGHV--S--LPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAE 318 (671)
T ss_dssp HHHHHTTSC--S--SCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTT
T ss_pred HHHHHHHhc--C--ceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcH
Confidence 444555542 3 566766653 22 33346777 799999999998743
No 75
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=34.06 E-value=1.2e+02 Score=21.39 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCee
Q 032365 12 NHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 63 (142)
Q Consensus 12 ~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~ 63 (142)
..+.+.|++.| +++.|+-.... ..+.-+++++.++++.+. .|++.
T Consensus 126 ~~l~~~a~~~g---v~l~lEn~~~~--~~~~~~~~~~~~l~~~~~--~~~~g 170 (278)
T 1i60_A 126 TELSDIAEPYG---VKIALEFVGHP--QCTVNTFEQAYEIVNTVN--RDNVG 170 (278)
T ss_dssp HHHHHHHGGGT---CEEEEECCCCT--TBSSCSHHHHHHHHHHHC--CTTEE
T ss_pred HHHHHHHHhcC---CEEEEEecCCc--cchhcCHHHHHHHHHHhC--CCCee
Confidence 34444455444 55655544332 114446677777777663 35544
No 76
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=32.89 E-value=1.4e+02 Score=21.67 Aligned_cols=103 Identities=13% Similarity=0.162 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeC-CCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHHHHHH
Q 032365 9 KIANHLDKAVSNLGRKPLKVLVQVNT-SGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLN 87 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~t-g~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~ 87 (142)
+.++.+.+.+.+.| +++.+.+.. |... +.|.++++..++++.+. +. +..+.++. ++ .. ++.+.+
T Consensus 132 ~~~~~v~~~~~~~g---~~viv~~~~~G~~l-~~~~~~~~~~~~a~~a~-~~-Gad~i~~~--~~----~~---~~~l~~ 196 (273)
T 2qjg_A 132 RDLGMIAETCEYWG---MPLIAMMYPRGKHI-QNERDPELVAHAARLGA-EL-GADIVKTS--YT----GD---IDSFRD 196 (273)
T ss_dssp HHHHHHHHHHHHHT---CCEEEEEEECSTTC-SCTTCHHHHHHHHHHHH-HT-TCSEEEEC--CC----SS---HHHHHH
T ss_pred HHHHHHHHHHHHcC---CCEEEEeCCCCccc-CCCCCHhHHHHHHHHHH-Hc-CCCEEEEC--CC----CC---HHHHHH
Confidence 45666777777666 445555532 2212 34566666666656555 43 34454443 21 11 222333
Q ss_pred HHHHHHHHhCCCCCCCeE-EecCch-h-------HHHHHHcCCcEEecCccccCCC
Q 032365 88 CRAEVCKALGMAEDQCEL-SMGMSG-D-------FEQAIEMGSTSVRIGSTIFGPR 134 (142)
Q Consensus 88 ~~~~l~~~~g~~~~~~~l-S~G~s~-~-------~~~a~~~g~t~VR~G~~ifg~~ 134 (142)
+.+... ++.+ +.|.+. + ...+.+.|.+-|-+|+.++...
T Consensus 197 ----i~~~~~----ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~ 244 (273)
T 2qjg_A 197 ----VVKGCP----APVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHD 244 (273)
T ss_dssp ----HHHHCS----SCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSS
T ss_pred ----HHHhCC----CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCC
Confidence 333322 4555 444442 3 3344578999999999998754
No 77
>3niq_A 3-guanidinopropionase; GPUA, hydrolase; 2.07A {Pseudomonas aeruginosa} PDB: 3nip_A
Probab=32.66 E-value=57 Score=25.21 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=20.7
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+. +.++.|+
T Consensus 252 tgt-p~pgGlt~~e~~~~l~~l~----~~~vvg~ 280 (326)
T 3niq_A 252 TGT-PEIGGMTSLQAQQLVRGLR----GLDLVGA 280 (326)
T ss_dssp CSS-CCSSCBCHHHHHHHHHTTT----TSCEEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHHc----CCCEEEE
Confidence 344 5678899988888887664 3567777
No 78
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=32.00 E-value=21 Score=28.50 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHH
Q 032365 8 EKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLG 50 (142)
Q Consensus 8 ~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~ 50 (142)
.+.++.|.+.|.+.| +.|.+.|+... ..++|++++++..
T Consensus 49 ~~~~~~l~~~a~~~g---~~vi~DIsp~~-l~~Lg~s~~dl~~ 87 (372)
T 2p0o_A 49 RQRLTDLGAIAKAEK---MKIMVDISGEA-LKRAGFSFDELEP 87 (372)
T ss_dssp HHHHHHHHHHHHHHT---CEEEEEECHHH-HHTTTCBTTBCHH
T ss_pred HHHHHHHHHHHHHCC---CEEEEECCHHH-HHHcCCCHHHHHH
Confidence 355667777888776 78888999755 6777777665443
No 79
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Probab=31.16 E-value=83 Score=24.15 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=22.0
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+. . ++.|+
T Consensus 241 tgt-p~pgGlt~~e~~~il~~l~-~----~vvg~ 268 (313)
T 3pzl_A 241 VGT-PEPFGLADTDVRRLIERLS-Y----KAVGF 268 (313)
T ss_dssp BSS-CCSSCBCHHHHHHHHHHHG-G----GEEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHHh-c----CeEEE
Confidence 444 5678999999999999988 5 56666
No 80
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A 2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A* 3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A* 3tf3_A 3th7_A 3the_A* ...
Probab=30.84 E-value=1.4e+02 Score=22.79 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=22.7
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+. ...+ +.|+
T Consensus 244 tgt-p~pgGlt~~e~~~~l~~l~-~~~~--vvg~ 273 (322)
T 2aeb_A 244 TGT-PVVGGLTYREGLYITEEIY-KTGL--LSGL 273 (322)
T ss_dssp BSS-CCSSCBCHHHHHHHHHHHH-HHSC--EEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHHH-ccCC--EEEE
Confidence 455 6788999999999999987 5443 5555
No 81
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=30.76 E-value=1.5e+02 Score=21.26 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeE
Q 032365 10 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l 64 (142)
.+..+.+.|++.| +.+.|+-. .+.+.-+++++.++++.+. .|++.+
T Consensus 124 ~l~~l~~~a~~~G---v~l~lE~~----~~~~~~~~~~~~~l~~~~~--~~~vg~ 169 (286)
T 3dx5_A 124 RIRMICELFAQHN---MYVLLETH----PNTLTDTLPSTLELLGEVD--HPNLKI 169 (286)
T ss_dssp HHHHHHHHHHHTT---CEEEEECC----TTSTTSSHHHHHHHHHHHC--CTTEEE
T ss_pred HHHHHHHHHHHhC---CEEEEecC----CCcCcCCHHHHHHHHHhcC--CCCeEE
Confidence 3445556666665 56666632 2345556777788887773 455543
No 82
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=30.72 E-value=1.8e+02 Score=22.30 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=12.1
Q ss_pred ChhhHHHHHHHHHccCCCeeEeeEeeec
Q 032365 44 DPSSCLGIVEHVRLRCPNLEFSGLMTIG 71 (142)
Q Consensus 44 ~~~~~~~l~~~i~~~~~~l~l~Gl~th~ 71 (142)
.|.++.++++.+++..|.+.+ |+|+|-
T Consensus 196 ~P~~v~~lv~~l~~~~p~~~i-~~H~Hn 222 (337)
T 3ble_A 196 SPEETFQGVDSLIQKYPDIHF-EFHGHN 222 (337)
T ss_dssp CHHHHHHHHHHHHHHCTTSCE-EEECBC
T ss_pred CHHHHHHHHHHHHHhcCCCeE-EEEecC
Confidence 445555555555323443332 444443
No 83
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=30.42 E-value=77 Score=21.15 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=26.8
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE-eeecCC
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL-MTIGMP 73 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl-~th~~~ 73 (142)
+.....++=+++++..+..+.+. . .++.+.|. +||+..
T Consensus 48 ~~~~~~~f~~dp~~~~~~~~~~~-~-~g~~ivG~~HSHP~~ 86 (146)
T 2kks_A 48 LDQSPEHFSMDPREQLTAVKDMR-K-NGWVMLGNFHSHPAT 86 (146)
T ss_dssp CSCCSSSCCCCHHHHHHHHHHHH-H-HTCEEEEEEEEESSS
T ss_pred cCCCCceEEECHHHHHHHHHHHH-H-CCCEEEEEEeCCCcC
Confidence 44434566678888777777665 3 36899999 779965
No 84
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=30.36 E-value=1.3e+02 Score=22.59 Aligned_cols=30 Identities=7% Similarity=0.004 Sum_probs=22.2
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+. ...+ +.|+
T Consensus 238 tgt-p~pgGlt~~e~~~~l~~l~-~~~~--vvg~ 267 (299)
T 2cev_A 238 VGT-PVIGGLTYRESHLAMEMLA-EAQI--ITSA 267 (299)
T ss_dssp CSS-CCSSCBCHHHHHHHHHHHH-HHTC--EEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHHh-cCCC--EEEE
Confidence 344 5678999999999999987 5443 5555
No 85
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A {Pseudomonas aeruginosa} SCOP: c.42.1.0
Probab=30.26 E-value=65 Score=24.73 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=20.6
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+. +.++.|+
T Consensus 255 tgt-p~pgGlt~~e~~~~l~~l~----~~~vvg~ 283 (319)
T 3nio_A 255 TGT-PEIGGLTTIQAMEIIRGCQ----GLDLIGC 283 (319)
T ss_dssp BSS-CCSSCBCHHHHHHHHHTTT----TSEEEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHhc----cCCeeEE
Confidence 344 4678899988887777553 5678887
No 86
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=29.75 E-value=48 Score=25.32 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=21.7
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+. . .++.|+
T Consensus 247 tgt-p~pgGlt~~e~~~~l~~l~-~---~~vvg~ 275 (313)
T 1gq6_A 247 TGT-PAPGGLLSREVLALLRCVG-D---LKPVGF 275 (313)
T ss_dssp BSS-CCSSCBCHHHHHHHGGGGG-G---SEEEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHHc-c---CCeEEE
Confidence 344 5678999999988888776 4 467777
No 87
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=29.62 E-value=1.5e+02 Score=20.87 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=25.2
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCC-CCccCCChhhHHHHHHHHHccCCCeeE
Q 032365 11 ANHLDKAVSNLGRKPLKVLVQVNTSGE-ESKSGIDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 11 ~~~l~~~a~~~~~~~~~v~I~v~tg~~-~~R~G~~~~~~~~l~~~i~~~~~~l~l 64 (142)
+..+.+.|++.| +++.|+-....+ .+.+.-+++++.++++.+. .|++.+
T Consensus 126 l~~l~~~a~~~g---v~l~~E~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~g~ 175 (260)
T 1k77_A 126 IRYAADRFAPHG---KRILVEALSPGVKPHYLFSSQYQALAIVEEVA--RDNVFI 175 (260)
T ss_dssp HHHHHHHHGGGT---CEEEECCCCTTTSTTBSCCSHHHHHHHHHHHC--CTTEEE
T ss_pred HHHHHHHHHHcC---CEEEEEeCCccCCCcCccCCHHHHHHHHHHhC--CCCEEE
Confidence 344455555555 455555332211 1233346677777777763 456554
No 88
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=29.44 E-value=2.3e+02 Score=23.12 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=38.3
Q ss_pred eEecC--CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCC---CccCCChhhHHHHHHHHH
Q 032365 2 VEGVG--NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEE---SKSGIDPSSCLGIVEHVR 56 (142)
Q Consensus 2 i~svd--s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~---~R~G~~~~~~~~l~~~i~ 56 (142)
|.+|. |++.++++=++|++.+ .+|.|++..+.-. +=.|+.++++..++..+.
T Consensus 23 i~av~~~n~e~i~Ail~aAee~~---sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A 79 (450)
T 3txv_A 23 IPSICSAHPLVIEAAMLRAHREK---APVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIA 79 (450)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSC---SCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHH
T ss_pred EEEeCcCCHHHHHHHHHHHHHhC---CCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHH
Confidence 34555 9999999999999865 6788898866311 124677888888887774
No 89
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=29.42 E-value=1.9e+02 Score=22.15 Aligned_cols=14 Identities=7% Similarity=-0.080 Sum_probs=8.0
Q ss_pred CChhhHHHHHHHHH
Q 032365 43 IDPSSCLGIVEHVR 56 (142)
Q Consensus 43 ~~~~~~~~l~~~i~ 56 (142)
.+++.+.++++.+.
T Consensus 146 ~~~e~~~~ia~~~~ 159 (345)
T 1nvm_A 146 IPAEKLAEQGKLME 159 (345)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 35555666666554
No 90
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=29.41 E-value=18 Score=19.00 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=9.9
Q ss_pred cCCcEEecCccc
Q 032365 119 MGSTSVRIGSTI 130 (142)
Q Consensus 119 ~g~t~VR~G~~i 130 (142)
.|+..||+|+.+
T Consensus 9 sgsklirvgiil 20 (42)
T 3kl4_B 9 SGSKLIRVGIIL 20 (42)
T ss_pred CccceEEeeeeh
Confidence 388999999875
No 91
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=28.56 E-value=1.5e+02 Score=22.36 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCC--cHHHHHH
Q 032365 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTS--TPENFRT 84 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~--~~~~~~~ 84 (142)
+.+.+..+-+...+. ..++|.+++.. |++.++..++++.+. +.. +.+|..|+....+. -...+
T Consensus 110 ~~~~~~eiv~~v~~~--~~~pv~vKir~-------G~~~~~~~~~a~~l~-~~G---~d~i~v~g~~~~~~~~~~~~~-- 174 (318)
T 1vhn_A 110 DLRHFRYIVRELRKS--VSGKFSVKTRL-------GWEKNEVEEIYRILV-EEG---VDEVFIHTRTVVQSFTGRAEW-- 174 (318)
T ss_dssp CHHHHHHHHHHHHHH--CSSEEEEEEES-------CSSSCCHHHHHHHHH-HTT---CCEEEEESSCTTTTTSSCCCG--
T ss_pred CHHHHHHHHHHHHHh--hCCCEEEEecC-------CCChHHHHHHHHHHH-HhC---CCEEEEcCCCccccCCCCcCH--
Confidence 344454444433332 23678778776 444444457777776 543 34454455431110 00001
Q ss_pred HHHHHHHHHHHhCCCCCCCeEEecC--ch-hHHHHHH-cCCcEEecCccccCCC
Q 032365 85 LLNCRAEVCKALGMAEDQCELSMGM--SG-DFEQAIE-MGSTSVRIGSTIFGPR 134 (142)
Q Consensus 85 ~~~~~~~l~~~~g~~~~~~~lS~G~--s~-~~~~a~~-~g~t~VR~G~~ifg~~ 134 (142)
+++..+++ + ++.+..|+ |+ +...+.+ .|.+.|-+|+.++.+.
T Consensus 175 --~~i~~i~~----~--ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P 220 (318)
T 1vhn_A 175 --KALSVLEK----R--IPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRP 220 (318)
T ss_dssp --GGGGGSCC----S--SCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCT
T ss_pred --HHHHHHHc----C--CeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCc
Confidence 12222222 2 45564454 32 2333455 6999999999988653
No 92
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=28.05 E-value=2.4e+02 Score=22.79 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=53.8
Q ss_pred Cce-EEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC----CCC----Cc-----HHHHHHHHHHHH
Q 032365 25 PLK-VLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP----DYT----ST-----PENFRTLLNCRA 90 (142)
Q Consensus 25 ~~~-v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~----~~~----~~-----~~~~~~~~~~~~ 90 (142)
.++ |.++|..+ ++.+++.++++.+. +.. +.||..+... +.. .. ...+..-.+++.
T Consensus 296 ~~P~V~vKispd-------~~~ed~~~iA~~~~-~aG---aDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~ 364 (443)
T 1tv5_A 296 KKPLVFVKLAPD-------LNQEQKKEIADVLL-ETN---IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFIC 364 (443)
T ss_dssp SCCEEEEEECSC-------CCHHHHHHHHHHHH-HTT---CSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCC-------CCHHHHHHHHHHHH-HcC---CCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHH
Confidence 466 77887554 45668888888886 542 4555444332 110 00 111223344555
Q ss_pred HHHHHhCCCCCCCeEEecCchhHH---HHHHcCCcEEecCcccc
Q 032365 91 EVCKALGMAEDQCELSMGMSGDFE---QAIEMGSTSVRIGSTIF 131 (142)
Q Consensus 91 ~l~~~~g~~~~~~~lS~G~s~~~~---~a~~~g~t~VR~G~~if 131 (142)
.+++..+.+ ++.+..|+-.+.. .++..|.+.|.+|+.++
T Consensus 365 ~v~~~v~~~--iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall 406 (443)
T 1tv5_A 365 EMYNYTNKQ--IPIIASGGIFSGLDALEKIEAGASVCQLYSCLV 406 (443)
T ss_dssp HHHHHTTTC--SCEEEESSCCSHHHHHHHHHTTEEEEEESHHHH
T ss_pred HHHHHcCCC--CcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 566553323 6778666544433 34678999999999944
No 93
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=27.64 E-value=1.6e+02 Score=20.75 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHH
Q 032365 9 KIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHV 55 (142)
Q Consensus 9 ~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i 55 (142)
+.++.+.+.|++.| +++.|+-.. . ...+.-+++++.++++.+
T Consensus 120 ~~l~~l~~~a~~~g---v~l~~E~~~-~-~~~~~~~~~~~~~l~~~v 161 (272)
T 2q02_A 120 EAIKRLSDLFARYD---IQGLVEPLG-F-RVSSLRSAVWAQQLIREA 161 (272)
T ss_dssp HHHHHHHHHHHTTT---CEEEECCCC-S-TTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CEEEEEecC-C-CcccccCHHHHHHHHHHh
Confidence 33444555555544 445444221 1 122334555666666554
No 94
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=27.21 E-value=1.7e+02 Score=20.95 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeE
Q 032365 11 ANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 11 ~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l 64 (142)
+..+.+.|++.| +++.|+-.... .+.+.-+++++.++++.+. .|++.+
T Consensus 134 l~~l~~~a~~~G---v~l~lEn~~~~-~~~~~~~~~~~~~l~~~v~--~~~vg~ 181 (294)
T 3vni_A 134 VREVAKVAEACG---VDFCLEVLNRF-ENYLINTAQEGVDFVKQVD--HNNVKV 181 (294)
T ss_dssp HHHHHHHHHHTT---CEEEEECCCTT-TCSSCCSHHHHHHHHHHHC--CTTEEE
T ss_pred HHHHHHHHHHcC---CEEEEEecCcc-cCcccCCHHHHHHHHHHcC--CCCEEE
Confidence 444555566655 56666643221 2344456778888888773 455443
No 95
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=26.98 E-value=41 Score=20.73 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=9.3
Q ss_pred HHHHHHhcCCCCceEEEEEe
Q 032365 14 LDKAVSNLGRKPLKVLVQVN 33 (142)
Q Consensus 14 l~~~a~~~~~~~~~v~I~v~ 33 (142)
|.+...+.| ....|.|-.|
T Consensus 36 L~~~F~~~G-~I~~v~i~~d 54 (99)
T 4fxv_A 36 LRSLFSSIG-EVESAKLIRD 54 (99)
T ss_dssp HHHHHHTTS-CEEEEEEEEC
T ss_pred HHHHHHhcC-CEEEeEeeec
Confidence 344445555 4455544444
No 96
>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initia structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} SCOP: c.42.1.1
Probab=25.86 E-value=2.2e+02 Score=21.62 Aligned_cols=38 Identities=8% Similarity=0.165 Sum_probs=25.1
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
||+ ....|+++.++..+++.+. ...++.-..|.-+.+.
T Consensus 248 tgt-p~pGGlt~~e~~~il~~l~-~~~~vvg~DivEv~P~ 285 (316)
T 2a0m_A 248 VSC-PAAVGLSAQEAFDMCFLAG-KTPTVMMMDMSELNPL 285 (316)
T ss_dssp BSS-CBSSCBCHHHHHHHHHHHH-HCTTEEEEEEECBCTT
T ss_pred CCC-CCCCCCCHHHHHHHHHHHH-cCCCEEEEEEEEECCC
Confidence 354 6788999999999999996 5443433333434443
No 97
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=25.26 E-value=2.2e+02 Score=22.24 Aligned_cols=108 Identities=10% Similarity=0.074 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCceEEEEEeCCCCCC--ccCCChhhHHHHHHHHHccCCCeeEeeEeeecCCCCCCcHHHHHHHHHHHHH
Q 032365 14 LDKAVSNLGRKPLKVLVQVNTSGEES--KSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMPDYTSTPENFRTLLNCRAE 91 (142)
Q Consensus 14 l~~~a~~~~~~~~~v~I~v~tg~~~~--R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~ 91 (142)
+..+.+..+ .. +|.|++......+ .-|.+.++..++++.+. +. ++.+ |..|.+.-...... ....+...
T Consensus 223 v~aVr~avg-~~-~v~vrls~~~~~~~~~~~~~~~~~~~la~~le-~~-Gvd~--i~v~~~~~~~~~~~---~~~~~~~~ 293 (377)
T 2r14_A 223 VDAVAEVFG-PE-RVGIRLTPFLELFGLTDDEPEAMAFYLAGELD-RR-GLAY--LHFNEPDWIGGDIT---YPEGFREQ 293 (377)
T ss_dssp HHHHHHHHC-GG-GEEEEECTTCCCTTCCCSCHHHHHHHHHHHHH-HT-TCSE--EEEECCC------C---CCTTHHHH
T ss_pred HHHHHHHcC-CC-cEEEEeccccccCCCCCCCCHHHHHHHHHHHH-Hc-CCCE--EEEeCCcccCCCCc---chHHHHHH
Confidence 444444445 34 7888987652111 23556678888888886 54 2333 32233210000000 01234455
Q ss_pred HHHHhCCCCCCCeEEec-Cchh-HHHHHHcC-CcEEecCccccCCC
Q 032365 92 VCKALGMAEDQCELSMG-MSGD-FEQAIEMG-STSVRIGSTIFGPR 134 (142)
Q Consensus 92 l~~~~g~~~~~~~lS~G-~s~~-~~~a~~~g-~t~VR~G~~ifg~~ 134 (142)
+++..+ ++.+..| .++. ...+++.| .+.|-+|..++.+-
T Consensus 294 ik~~~~----iPvi~~Ggi~~~~a~~~l~~g~aD~V~igR~~l~~P 335 (377)
T 2r14_A 294 MRQRFK----GGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANP 335 (377)
T ss_dssp HHHHCC----SEEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCT
T ss_pred HHHHCC----CCEEEECCCCHHHHHHHHHCCCceEEeecHHHHhCc
Confidence 666533 3455444 4422 22345777 79999999998764
No 98
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=25.25 E-value=1.9e+02 Score=20.80 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCee
Q 032365 11 ANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLE 63 (142)
Q Consensus 11 ~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~ 63 (142)
+..+.+.|++.| +++.|+-.. +.+.-+++++.++++.+. .|++.
T Consensus 149 l~~l~~~a~~~G---v~l~lEn~~----~~~~~~~~~~~~l~~~v~--~~~vg 192 (295)
T 3cqj_A 149 LKESVEMASRAQ---VTLAMEIMD----YPLMNSISKALGYAHYLN--NPWFQ 192 (295)
T ss_dssp HHHHHHHHHHHT---CEEEEECCS----SGGGCSHHHHHHHHHHHC--CTTEE
T ss_pred HHHHHHHHHHhC---CEEEEeeCC----CcccCCHHHHHHHHHhcC--CCCeE
Confidence 344445555555 445444321 234445666666666663 34444
No 99
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Probab=25.11 E-value=2.3e+02 Score=21.64 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+. . .++.|+
T Consensus 258 tgt-p~pgGlt~~e~~~~l~~l~-~---~~vvg~ 286 (324)
T 4dz4_A 258 TGT-PVAGGLSSAQALAIVRGLG-G---VNLIGA 286 (324)
T ss_dssp SSS-CCSSCBCHHHHHHHHHTCT-T---SCEEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHHh-c---CCeeEE
Confidence 344 4678999999888888775 4 466777
No 100
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=24.16 E-value=43 Score=21.18 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCCCCCc-cC-CChhhHHHHHHHHHccCCCeeEeeE
Q 032365 13 HLDKAVSNLGRKPLKVLVQVNTSGEESK-SG-IDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 13 ~l~~~a~~~~~~~~~v~I~v~tg~~~~R-~G-~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
.|.+...+.| ....|.|-.|..++.+| +| |..++..+.-+.+. .+.+..+.|=
T Consensus 22 ~L~~~F~~~G-~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~-~lng~~~~gr 76 (110)
T 3s8s_A 22 FLKDMCRKYG-EVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVK-NLHLTSVMGN 76 (110)
T ss_dssp HHHHHHTTTS-CEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-HHTTCEETTE
T ss_pred HHHHHHHhcC-CeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHH-HhCCCEECCe
Confidence 3556666677 66777666665433443 45 33333333444444 4446666664
No 101
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=24.16 E-value=1.8e+02 Score=21.32 Aligned_cols=46 Identities=17% Similarity=0.171 Sum_probs=23.8
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeE
Q 032365 11 ANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 11 ~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l 64 (142)
++.+.+.|++.| +++.|+-..+ .+.-+++++.++++.+. ..|++.+
T Consensus 162 l~~l~~~a~~~G---v~l~lEn~~~----~~~~~~~~~~~ll~~v~-~~~~vg~ 207 (340)
T 2zds_A 162 WNPILDVFDAEG---VRFAHEVHPS----EIAYDYWTTHRALEAVG-HRPAFGL 207 (340)
T ss_dssp HHHHHHHHHHHT---CEEEEECCTT----SSCCSHHHHHHHHHHTT-TCTTEEE
T ss_pred HHHHHHHHHHcC---CEEEEEcCCC----cccCCHHHHHHHHHhcC-CCCCeeE
Confidence 344555566555 5666664322 12235566666666653 3565443
No 102
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=23.84 E-value=1.9e+02 Score=20.58 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeE
Q 032365 11 ANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 11 ~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l 64 (142)
+..+.+.|++.| +++.|+-.... .+.+.-+++++.++++.+ ..|++.+
T Consensus 135 l~~l~~~a~~~g---v~l~lEn~~~~-~~~~~~~~~~~~~l~~~~--~~~~~g~ 182 (290)
T 2qul_A 135 VRRVIKVAEDYG---IIYALEVVNRF-EQWLCNDAKEAIAFADAV--DSPACKV 182 (290)
T ss_dssp HHTTHHHHHHHT---CEEEEECCCTT-TCSSCCSHHHHHHHHHHH--CCTTEEE
T ss_pred HHHHHHHHHHcC---CEEEEEeCccc-cccccCCHHHHHHHHHHc--CCCCEEE
Confidence 344455566555 56666643321 123444677888888776 3455554
No 103
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=23.81 E-value=2.4e+02 Score=21.44 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=24.0
Q ss_pred CCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032365 38 ESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 38 ~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
....|+++.++..+++.+. ....+.-..|.-+.+.
T Consensus 260 p~pgGlt~~e~~~il~~l~-~~~~vvg~DivEv~P~ 294 (322)
T 3m1r_A 260 IGPGGLYTDELLEAVKYIA-QQPNVAGIEIVEVDPT 294 (322)
T ss_dssp CCSSCBCHHHHHHHHHHHH-TSTTEEEEEEECCCGG
T ss_pred CCCCCCCHHHHHHHHHHHh-ccCCEEEEEEEEECCC
Confidence 4678999999999999997 6554443334444443
No 104
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=23.50 E-value=2.2e+02 Score=20.77 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeE
Q 032365 10 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l 64 (142)
.+..+.+.|++.| +.+.|+-.... .+.+.-+++++.++++.+. .|++.+
T Consensus 152 ~l~~l~~~a~~~g---v~l~lEn~~~~-~~~~~~~~~~~~~l~~~v~--~~~vg~ 200 (309)
T 2hk0_A 152 GINGIADFANDLG---INLCIEVLNRF-ENHVLNTAAEGVAFVKDVG--KNNVKV 200 (309)
T ss_dssp HHHHHHHHHHHTT---CEEEEECCCTT-TCSSCCSHHHHHHHHHHHT--CTTEEE
T ss_pred HHHHHHHHHHHcC---CEEEEeecccc-cccccCCHHHHHHHHHHcC--CCCeEE
Confidence 3445555666655 56766643221 2344556788888888774 456543
No 105
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=23.47 E-value=1.7e+02 Score=21.01 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeE
Q 032365 10 IANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEF 64 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l 64 (142)
.+..+.+.|++.| +++.|+-. .+.+.-+++++.++++.+. .|++.+
T Consensus 142 ~l~~l~~~a~~~g---v~l~lE~~----~~~~~~~~~~~~~l~~~~~--~~~vg~ 187 (301)
T 3cny_A 142 GLNHYGEIAAKYG---LKVAYHHH----MGTGIQTKEETDRLMANTD--PKLVGL 187 (301)
T ss_dssp HHHHHHHHHHHTT---CEEEEECC----TTSSSCSHHHHHHHHHTSC--TTTCEE
T ss_pred HHHHHHHHHHHcC---CEEEEecC----CCcccCCHHHHHHHHHhCC--ccceeE
Confidence 3445556666666 56666643 2345556677777776552 355554
No 106
>1ffk_Y Ribosomal protein L39E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: a.137.1.1
Probab=23.35 E-value=87 Score=17.56 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=16.5
Q ss_pred HHHHHHHhcCCCCceEEEEEeCCC
Q 032365 13 HLDKAVSNLGRKPLKVLVQVNTSG 36 (142)
Q Consensus 13 ~l~~~a~~~~~~~~~v~I~v~tg~ 36 (142)
.|++...+ + .++|.+|.+.|+.
T Consensus 10 rLaK~~kQ-N-rpiP~Wv~~KT~~ 31 (49)
T 1ffk_Y 10 RKAKLDNQ-N-SRVPAYVMLKTDR 31 (49)
T ss_pred HHHHHHhc-c-CCCCcEEEEecCC
Confidence 45555554 4 8999999999994
No 107
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=23.25 E-value=2.3e+02 Score=20.99 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhcCCCCceEEEEEeCCC-CCCccCCChhhHHHHHHHHH
Q 032365 7 NEKIANHLDKAVSNLGRKPLKVLVQVNTSG-EESKSGIDPSSCLGIVEHVR 56 (142)
Q Consensus 7 s~~~~~~l~~~a~~~~~~~~~v~I~v~tg~-~~~R~G~~~~~~~~l~~~i~ 56 (142)
+++.+...-+.|.+.| . +|-..|-+.. -..-.-.+++.+.++++.+.
T Consensus 118 ~~~~~~~~v~~a~~~G-~--~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~ 165 (295)
T 1ydn_A 118 SIERLSPVIGAAINDG-L--AIRGYVSCVVECPYDGPVTPQAVASVTEQLF 165 (295)
T ss_dssp HHHHHHHHHHHHHHTT-C--EEEEEEECSSEETTTEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-C--eEEEEEEEEecCCcCCCCCHHHHHHHHHHHH
Confidence 4455555566666666 3 3322333210 01111246777788887765
No 108
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=22.08 E-value=56 Score=21.59 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCCceEEEEEeCCCC-------CCccC-----CChhhHHHHHHHHHccC
Q 032365 10 IANHLDKAVSNLGRKPLKVLVQVNTSGE-------ESKSG-----IDPSSCLGIVEHVRLRC 59 (142)
Q Consensus 10 ~~~~l~~~a~~~~~~~~~v~I~v~tg~~-------~~R~G-----~~~~~~~~l~~~i~~~~ 59 (142)
.++.|++.....+ +.+.. .||-..+ ...+| |+++++.++++.+. ..
T Consensus 43 av~~lN~~~~~~n-~~L~F--~vdee~~~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~-e~ 100 (117)
T 2hc5_A 43 MVGEMNKLLEPSQ-VHLKF--ELHDKLNEYYVKVIEDSTNEVIREIPPKRWLDFYAAMT-EF 100 (117)
T ss_dssp HHHHHHHHHTTSS-CCEEE--EEEEETTEEEEEEEETTTTEEEEEECHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHhcC-CceEE--EEecCCCcEEEEEEECCCCcEEEeCChHHHHHHHHHHH-Hh
Confidence 4466777766554 44444 3431100 13455 68999999999887 54
No 109
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=21.77 E-value=3.2e+02 Score=22.03 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCC---ccCCChhhHHHHHHHHHc--cCCCeeEeeEee-ecCC---CCC
Q 032365 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEES---KSGIDPSSCLGIVEHVRL--RCPNLEFSGLMT-IGMP---DYT 76 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~---R~G~~~~~~~~l~~~i~~--~~~~l~l~Gl~t-h~~~---~~~ 76 (142)
-|++.++++=++|++.+ .+|.|++-.+.-.. -.|..++.+..++..+.+ ..|. .-.-|+- |+.. ...
T Consensus 22 ~n~e~i~Ail~aAee~~---sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~-~~VaLHlDHg~~~~w~~~ 97 (420)
T 2fiq_A 22 AHPLVIEAALAFDRNST---RKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFAR-ERIILGGDHLGPNCWQQE 97 (420)
T ss_dssp CCHHHHHHHHHHTTTSC---CCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCG-GGEEEEEEEESSGGGTTS
T ss_pred CCHHHHHHHHHHHHHcC---CCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCc-ceEEEECCCCCCcccccc
Confidence 58999999999998865 68999998774221 345557888888777641 2331 0122322 4432 112
Q ss_pred CcHHHHHHHHHHHHHHHHHhCCC
Q 032365 77 STPENFRTLLNCRAEVCKALGMA 99 (142)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~~g~~ 99 (142)
+..+..+.-.+++...-+. |++
T Consensus 98 ~~~~am~~a~e~i~~aI~a-GFt 119 (420)
T 2fiq_A 98 NVDAAMEKSVELVKAYVRA-GFS 119 (420)
T ss_dssp BHHHHHHHHHHHHHHHHHT-TCC
T ss_pred chhhhhhhHHHHHHHHHHh-CCC
Confidence 2345555555555544444 776
No 110
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae O1 biovar eltor, structure genomics, protein structure initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Probab=21.56 E-value=2.7e+02 Score=21.22 Aligned_cols=30 Identities=7% Similarity=0.053 Sum_probs=22.6
Q ss_pred CCCCCCccCCChhhHHHHHHHH-HccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHV-RLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i-~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+ . ... ++.|+
T Consensus 266 tgt-p~pgGlt~~e~~~~l~~l~~-~~~--~vvg~ 296 (336)
T 1xfk_A 266 VSA-PAARGVSLEALAPYFDRILH-YKN--KLMIA 296 (336)
T ss_dssp SSS-CBSSCCCHHHHHHHHHHHHH-CTT--TEEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHHHh-CCC--CEEEE
Confidence 454 678899999999999999 6 544 45555
No 111
>1yoe_A Hypothetical protein YBEK; pyrimidine nucleoside hydrolase, bacterial nucleosidase, RIB enzyme-product complex, hydrolase; HET: RIB; 1.78A {Escherichia coli} PDB: 3g5i_A*
Probab=21.50 E-value=1.7e+02 Score=22.35 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=27.8
Q ss_pred cCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHHccCCCeeEeeEeeecCC
Q 032365 21 LGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGLMTIGMP 73 (142)
Q Consensus 21 ~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl~th~~~ 73 (142)
+| ...+|.|..|+| .+++..++-.+ ..|.+++.||-+..++
T Consensus 10 ~~-~~~~viiD~D~G---------iDDa~AL~~al--~~p~i~l~gIttv~GN 50 (322)
T 1yoe_A 10 HG-SALPILLDCDPG---------HDDAIAIVLAL--ASPELDVKAITSSAGN 50 (322)
T ss_dssp -C-CCEEEEEEECCS---------HHHHHHHHHHH--TCTTEEEEEEEECSSS
T ss_pred cC-CCceEEEECCCC---------HHHHHHHHHHH--hCCCCEEEEEEEcCCC
Confidence 45 566775555554 36777766555 5689999999887765
No 112
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=20.67 E-value=2.8e+02 Score=24.00 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCC--CCCCccCCChhhHHHHHHHHH
Q 032365 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTS--GEESKSGIDPSSCLGIVEHVR 56 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg--~~~~R~G~~~~~~~~l~~~i~ 56 (142)
.+++.++..-+.+.+.| ..+.+.+.. ++ ....|...+++.+.++++.+.
T Consensus 221 n~l~~l~~~i~~ak~~G-~~v~~~i~~-~~d~~dp~r~~~~~e~~~~~a~~l~ 271 (718)
T 3bg3_A 221 NYLPNMLLGMEAAGSAG-GVVEAAISY-TGDVADPSRTKYSLQYYMGLAEELV 271 (718)
T ss_dssp CCHHHHHHHHHHHHTTT-SEEEEEEEC-CSCTTCTTCCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CeEEEEEEe-eccccCCCCCCCCHHHHHHHHHHHH
Confidence 34455555555566655 433332321 11 224555567777777777765
No 113
>1woh_A Agmatinase; alpha/beta fold, hydrolase; 1.75A {Deinococcus radiodurans} SCOP: c.42.1.1 PDB: 1wog_A 1woi_A
Probab=20.46 E-value=2.8e+02 Score=20.84 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=22.7
Q ss_pred CCCCCCccCCChhhHHHHHHHHHccCCCeeEeeE
Q 032365 34 TSGEESKSGIDPSSCLGIVEHVRLRCPNLEFSGL 67 (142)
Q Consensus 34 tg~~~~R~G~~~~~~~~l~~~i~~~~~~l~l~Gl 67 (142)
||+ ....|+++.++..+++.+. .. .++.|+
T Consensus 241 tgt-p~pgGlt~~e~~~~l~~l~-~~--~~vvg~ 270 (305)
T 1woh_A 241 TSS-PEPDGLTYAQGMKILAAAA-AN--NTVVGL 270 (305)
T ss_dssp BSS-CCSSCBCHHHHHHHHHHHH-HH--SEEEEE
T ss_pred CCC-CCCCCCCHHHHHHHHHHHh-cc--CCEEEE
Confidence 454 6778999999999999986 44 356666
No 114
>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*
Probab=20.45 E-value=2.2e+02 Score=21.89 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCCccCCChhhHHHHHHHHH----ccCCCeeEeeE
Q 032365 6 GNEKIANHLDKAVSNLGRKPLKVLVQVNTSGEESKSGIDPSSCLGIVEHVR----LRCPNLEFSGL 67 (142)
Q Consensus 6 ds~~~~~~l~~~a~~~~~~~~~v~I~v~tg~~~~R~G~~~~~~~~l~~~i~----~~~~~l~l~Gl 67 (142)
.+.+...+..+++.+.| ... |+|+++-+.-|..++++.-+.+.++ .+...++++||
T Consensus 163 t~~e~i~~A~~ia~~AG---ADF---VKTSTGf~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~ 222 (297)
T 4eiv_A 163 QGGDIISRAAVAALEGG---ADF---LQTSSGLGATHATMFTVHLISIALREYMVRENERIRVEGI 222 (297)
T ss_dssp CCHHHHHHHHHHHHHHT---CSE---EECCCSSSSCCCCHHHHHHHHHHHHHHHCC----------
T ss_pred CcHHHHHHHHHHHHHhC---CCE---EEcCCCCCCCCCCHHHHHHHHHHHHHHhcccccccccccc
Confidence 34444455566665555 333 5566556666777777766666663 02235666666
No 115
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=20.27 E-value=2.8e+02 Score=20.79 Aligned_cols=17 Identities=29% Similarity=0.149 Sum_probs=13.4
Q ss_pred eEecCCHHHHHHHHHHH
Q 032365 2 VEGVGNEKIANHLDKAV 18 (142)
Q Consensus 2 i~svds~~~~~~l~~~a 18 (142)
++-|+|.++++.+.+.+
T Consensus 117 lP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 117 VPMVQNADEAREAVRAT 133 (287)
T ss_dssp ESCCCSHHHHHHHHHHT
T ss_pred eCCCCCHHHHHHHHHHh
Confidence 56688999998887765
No 116
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.09 E-value=69 Score=18.90 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=8.9
Q ss_pred HHHHHHhcCCCCceEEEEEe
Q 032365 14 LDKAVSNLGRKPLKVLVQVN 33 (142)
Q Consensus 14 l~~~a~~~~~~~~~v~I~v~ 33 (142)
|.+...+.| ....|.|..+
T Consensus 32 l~~~f~~~G-~v~~v~i~~~ 50 (95)
T 2cqc_A 32 LREVFSKYG-PIADVSIVYD 50 (95)
T ss_dssp HHHHHHTTS-CEEEEEEEEC
T ss_pred HHHHHHhcC-CeeEEEEEEc
Confidence 344444445 4445544444
Done!