BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032366
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X57|A Chain A, Solution Structures Of The Hth Domain Of Human Edf-1
Protein
Length = 91
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 50/67 (74%)
Query: 75 AHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERAL 134
+ DRV E+ K I Q R K LTQ LA INEKPQVI +YESG+AIPN Q+L K+ERA+
Sbjct: 6 SGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAI 65
Query: 135 GVKLRGK 141
G+KLRGK
Sbjct: 66 GLKLRGK 72
>pdb|2JVL|A Chain A, Nmr Structure Of The C-Terminal Domain Of Mbf1 Of
Trichoderm
Length = 107
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 66 KLDEDTENLAHDRVPSELKKAIVQARN--DKKLTQSQLAQLINEKPQVIQEYESGKAIPN 123
K+D + + V E+ KAI Q R + +TQ++L + I E + YE G A P+
Sbjct: 18 KVDRSDDIIKPKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPD 77
Query: 124 QQILTKLERALGVKLRG 140
Q IL+K+ER L VKLRG
Sbjct: 78 QNILSKMERVLNVKLRG 94
>pdb|3MLF|A Chain A, Putative Transcriptional Regulator From Staphylococcus
Aureus.
pdb|3MLF|B Chain B, Putative Transcriptional Regulator From Staphylococcus
Aureus.
pdb|3MLF|C Chain C, Putative Transcriptional Regulator From Staphylococcus
Aureus.
pdb|3MLF|D Chain D, Putative Transcriptional Regulator From Staphylococcus
Aureus.
pdb|3MLF|E Chain E, Putative Transcriptional Regulator From Staphylococcus
Aureus
Length = 111
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 67 LDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI 126
+D TENL S K + + R D LTQ +L L + IQ E +
Sbjct: 11 VDLGTENL---YFQSNAXKTLKELRTDYGLTQKELGDLFKVSSRTIQNXEKDSTNIKDSL 67
Query: 127 LTKLERALGVK 137
L+K A VK
Sbjct: 68 LSKYXSAFNVK 78
>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 482
Score = 29.3 bits (64), Expect = 0.81, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 78 RVPSEL--KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119
++PS++ +K + Q ND+KL + + + + + P+ +Q+Y+SGK
Sbjct: 405 KMPSQIVEEKGLTQI-NDEKLIEELVKKAMEQNPKAVQDYKSGK 447
>pdb|1SQ8|A Chain A, A Variant 434 Repressor Dna Binding Domain Devoid Of
Hydroxyl Groups, Nmr, 20 Structures
Length = 64
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 96 LTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGV 136
L Q++LAQ + Q I++ E+GKA + L +L RALGV
Sbjct: 16 LNQAELAQKVGVDQQAIEQLENGKA-KRPRFLPELARALGV 55
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 22 NAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDR--- 78
NA K ++A RRA + G +S LN ++ DE NLA R
Sbjct: 316 NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLNNKRWDEAAVNLAKSRWYN 375
Query: 79 -VPSELKKAIVQAR 91
P+ K+ I R
Sbjct: 376 QTPNRAKRVITTFR 389
>pdb|1ZZ6|A Chain A, Crystal Structure Of Apo-hppe
pdb|1ZZ6|B Chain B, Crystal Structure Of Apo-hppe
pdb|1ZZ7|A Chain A, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 1
pdb|1ZZ7|B Chain B, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 1
pdb|1ZZ8|A Chain A, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ8|B Chain B, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ8|C Chain C, Crystal Structure Of Feii Hppe In Complex With Substrate
Form 2
pdb|1ZZ9|A Chain A, Crystal Structure Of Feii Hppe
pdb|1ZZ9|B Chain B, Crystal Structure Of Feii Hppe
pdb|1ZZ9|C Chain C, Crystal Structure Of Feii Hppe
pdb|1ZZB|A Chain A, Crystal Structure Of Coii Hppe In Complex With Substrate
pdb|1ZZB|B Chain B, Crystal Structure Of Coii Hppe In Complex With Substrate
pdb|1ZZC|A Chain A, Crystal Structure Of Coii Hppe In Complex With Tris Buffer
pdb|1ZZC|B Chain B, Crystal Structure Of Coii Hppe In Complex With Tris Buffer
pdb|2BNM|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNM|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNN|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis In Complex With Fosfomycin
pdb|2BNN|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis In Complex With Fosfomycin
pdb|2BNO|A Chain A, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|2BNO|B Chain B, The Structure Of Hydroxypropylphosphonic Acid Epoxidase
From S. Wedmorenis.
pdb|3SCF|A Chain A, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCF|B Chain B, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCF|C Chain C, Fe(Ii)-Hppe With S-Hpp And No
pdb|3SCG|A Chain A, Fe(Ii)-Hppe With R-Hpp
pdb|3SCG|B Chain B, Fe(Ii)-Hppe With R-Hpp
pdb|3SCG|C Chain C, Fe(Ii)-Hppe With R-Hpp
Length = 198
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 91 RNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLER 132
R K+ + LA L+ E P+ + +E+G+ + LT+L R
Sbjct: 19 REQVKMDHAALASLLGETPETVAAWENGEG--GELTLTQLGR 58
>pdb|2XCJ|A Chain A, Crystal Structure Of P2 C, The Immunity Repressor Of
Temperate E. Coli Phage P2
pdb|2XCJ|B Chain B, Crystal Structure Of P2 C, The Immunity Repressor Of
Temperate E. Coli Phage P2
pdb|2L49|A Chain A, The Solution Structure Of The P2 C,The Immunity Repressor
Of The P2 Bacteriophage
pdb|2L49|B Chain B, The Solution Structure Of The P2 C,The Immunity Repressor
Of The P2 Bacteriophage
Length = 99
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKL 130
+ + IV R + L++ QLA L + YESG++ P ++ +
Sbjct: 5 ISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNI 52
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 27.3 bits (59), Expect = 3.3, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 15/99 (15%)
Query: 22 NAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDR--- 78
NA K ++A RRA + G +S L ++ DE NLA R
Sbjct: 297 NAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYN 356
Query: 79 -VPSELKKAIVQARN-----------DKKLTQSQLAQLI 105
P+ K+ I R +KK+T++ LA L+
Sbjct: 357 QTPNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILL 395
>pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
pdb|3PPH|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Threonine Variant
Length = 789
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 15 VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69
VIK A K DE VV A +G D+ +++A + KA S S+ N K+ E
Sbjct: 377 VIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQE 431
>pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
Without Zinc
pdb|3PPG|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Alanine Variant
With Zinc
Length = 789
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 15 VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69
VIK A K DE VV A +G D+ +++A + KA S S+ N K+ E
Sbjct: 377 VIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQE 431
>pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
pdb|3PPC|B Chain B, Crystal Structure Of The Candida Albicans Methionine
Synthase By Surface Entropy Reduction, Tyrosine Variant
With Zinc
Length = 789
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 15 VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69
VIK A K DE VV A +G D+ +++A + KA S S+ N K+ E
Sbjct: 377 VIKDWFSFATQKLDEVVVIAKNVSGEDVSKQLEANAASIKARSESSITNDPKVQE 431
>pdb|2A0A|A Chain A, Solution Structure Of Der F 13, Group 13 Allergen From
House Dust Mites
Length = 131
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 57 SSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY 115
S ST NT + E DR + K ++Q D K Q+Q +++ ++I+E+
Sbjct: 53 SLSTFKNTEAKFKLGEEFEEDRADGKRVKTVIQKEGDNKFVQTQFG---DKEVKIIREF 108
>pdb|1C6L|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Argon
pdb|1C6M|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Krypton
pdb|1C6N|A Chain A, T4 Lysozyme Mutant C54tC97AL99AF153A IN THE PRESENCE OF 8
Atm Xenon
pdb|1L84|A Chain A, A Cavity-Containing Mutant Of T4 Lysozyme Is Stabilized By
Buried Benzene
pdb|1L89|A Chain A, Similar Hydrophobic Replacements Of Leu 99 And Phe 153
Within The Core Of T4 Lysozyme Have Different Structural
And Thermodynamic Consequences
Length = 164
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 22 NAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLA----HD 77
NA K ++A RRA A + G +S L ++ DE NLA ++
Sbjct: 81 NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYN 140
Query: 78 RVPSELKKAIVQAR 91
+ P+ K+ I AR
Sbjct: 141 QTPNRAKRVITTAR 154
>pdb|3GN5|B Chain B, Structure Of The E. Coli Protein Mqsa (YgitB3021)
Length = 133
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERAL 134
IV+ R LTQ + +++ YE G A P+ + KL R L
Sbjct: 76 IVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTI-KLLRVL 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.123 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,614,230
Number of Sequences: 62578
Number of extensions: 118245
Number of successful extensions: 586
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 46
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 46 (22.3 bits)