BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032366
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LXT3|MBF1B_ARATH Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B
PE=2 SV=1
Length = 142
Score = 252 bits (644), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 122/142 (85%), Positives = 135/142 (95%)
Query: 1 MAGIGPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSST 60
MAGIGPITQDWEPVVI+K+APNAA K+DEK VNAARR+GADIETVRK +AG+NKAASS T
Sbjct: 1 MAGIGPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGT 60
Query: 61 SLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 120
SLNT+KLD+DTENL+HDRVP+ELKKAI+QAR +KKLTQSQLA LINEKPQVIQEYESGKA
Sbjct: 61 SLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKA 120
Query: 121 IPNQQILTKLERALGVKLRGKK 142
IPNQQIL+KLERALG KLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142
>sp|Q9SJI8|MBF1A_ARATH Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A
PE=2 SV=1
Length = 142
Score = 247 bits (631), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/142 (85%), Positives = 132/142 (92%)
Query: 1 MAGIGPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSST 60
MAGIGPITQDWEPVVI+KK NAA K+DEK VNAARR+GADIETVRK +AGTNKAASS T
Sbjct: 1 MAGIGPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGT 60
Query: 61 SLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 120
SLNT+ LD+DTENL H+RVP+ELKKAI+QAR DKKLTQSQLAQ+INEKPQVIQEYESGKA
Sbjct: 61 SLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKA 120
Query: 121 IPNQQILTKLERALGVKLRGKK 142
IPNQQIL+KLERALG KLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142
>sp|Q9LV58|MBF1C_ARATH Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C
PE=1 SV=1
Length = 148
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 101/139 (72%), Gaps = 2/139 (1%)
Query: 5 GPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTS--L 62
G +TQDWEPVV+ K + +D K VNAA R G ++TV+K AG+NK S+ +
Sbjct: 7 GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVI 66
Query: 63 NTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIP 122
NT+KL+E+TE A DRV +E++ I +AR +KK++Q+ LA+ INE+ QV+QEYE+GKA+P
Sbjct: 67 NTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVP 126
Query: 123 NQQILTKLERALGVKLRGK 141
NQ +L K+E+ LGVKLRGK
Sbjct: 127 NQAVLAKMEKVLGVKLRGK 145
>sp|Q5ZMC0|EDF1_CHICK Endothelial differentiation-related factor 1 homolog OS=Gallus
gallus GN=EDF1 PE=2 SV=1
Length = 148
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 93/133 (69%), Gaps = 3/133 (2%)
Query: 10 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLD 68
DW+ V V++KK P+AA K ++ V AA+R G D+ET +K AG NK + NT KLD
Sbjct: 5 DWDTVTVLRKKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNK--QHFITKNTAKLD 62
Query: 69 EDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT 128
+TE L HDRVP E+ K I Q R K +TQ LA INEKPQVI +YESG+AIPN Q++
Sbjct: 63 RETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMG 122
Query: 129 KLERALGVKLRGK 141
K+ERA+G+KLRGK
Sbjct: 123 KIERAIGLKLRGK 135
>sp|O60869|EDF1_HUMAN Endothelial differentiation-related factor 1 OS=Homo sapiens
GN=EDF1 PE=1 SV=1
Length = 148
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 92/133 (69%), Gaps = 3/133 (2%)
Query: 10 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLD 68
DW+ V V++KK P AA K ++ + AA+R G D+ET +K AG NK S + NT KLD
Sbjct: 5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLD 62
Query: 69 EDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT 128
+TE L HDRV E+ K I Q R K LTQ LA INEKPQVI +YESG+AIPN Q+L
Sbjct: 63 RETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLG 122
Query: 129 KLERALGVKLRGK 141
K+ERA+G+KLRGK
Sbjct: 123 KIERAIGLKLRGK 135
>sp|Q3T0V7|EDF1_BOVIN Endothelial differentiation-related factor 1 OS=Bos taurus GN=EDF1
PE=2 SV=1
Length = 148
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 92/133 (69%), Gaps = 3/133 (2%)
Query: 10 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLD 68
DW+ V V++KK P AA K ++ + AA+R G D+ET +K AG NK S + NT KLD
Sbjct: 5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLD 62
Query: 69 EDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT 128
+TE L HDRV E+ K I Q R K LTQ LA INEKPQVI +YESG+AIPN Q+L
Sbjct: 63 RETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLG 122
Query: 129 KLERALGVKLRGK 141
K+ERA+G+KLRGK
Sbjct: 123 KIERAIGLKLRGK 135
>sp|Q6GPQ6|EDF1_XENLA Endothelial differentiation-related factor 1 homolog OS=Xenopus
laevis GN=edf1 PE=2 SV=1
Length = 147
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 10 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLD 68
DW+ V V++KK P AA K ++ + AA+R G ++ET +K AG NK + + NT KLD
Sbjct: 5 DWDTVTVLRKKGPTAAQAKSKQAITAAQRRGEEVETSKKWSAGQNK--QHTITRNTAKLD 62
Query: 69 EDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT 128
+TE L HDRVP E+ K I Q R K +TQ LA INEKPQVI +YE GKAIPN Q++
Sbjct: 63 RETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMG 122
Query: 129 KLERALGVKLRGK 141
K+ER +G+KLRGK
Sbjct: 123 KIERVIGLKLRGK 135
>sp|P69736|EDF1_RAT Endothelial differentiation-related factor 1 OS=Rattus norvegicus
GN=Edf1 PE=1 SV=1
Length = 148
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 92/133 (69%), Gaps = 3/133 (2%)
Query: 10 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLD 68
DW+ V V++KK P AA K ++ + AA+R G D+ET +K AG NK S + NT KLD
Sbjct: 5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLD 62
Query: 69 EDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT 128
+TE L HDRV E+ K I + R K LTQ LA INEKPQVI +YESG+AIPN Q+L
Sbjct: 63 RETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLG 122
Query: 129 KLERALGVKLRGK 141
K+ERA+G+KLRGK
Sbjct: 123 KIERAIGLKLRGK 135
>sp|Q9JMG1|EDF1_MOUSE Endothelial differentiation-related factor 1 OS=Mus musculus
GN=Edf1 PE=1 SV=1
Length = 148
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 92/133 (69%), Gaps = 3/133 (2%)
Query: 10 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLD 68
DW+ V V++KK P AA K ++ + AA+R G D+ET +K AG NK S + NT KLD
Sbjct: 5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLD 62
Query: 69 EDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT 128
+TE L HDRV E+ K I + R K LTQ LA INEKPQVI +YESG+AIPN Q+L
Sbjct: 63 RETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLG 122
Query: 129 KLERALGVKLRGK 141
K+ERA+G+KLRGK
Sbjct: 123 KIERAIGLKLRGK 135
>sp|Q6PBY3|EDF1_DANRE Endothelial differentiation-related factor 1 homolog OS=Danio rerio
GN=edf1 PE=2 SV=1
Length = 146
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 89/132 (67%), Gaps = 2/132 (1%)
Query: 10 DWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDE 69
DW+ V + +K +AA K ++ V AA+R G +ET +K AG NK + NT KLD
Sbjct: 5 DWDTVTVLRKKGSAAQSKSKQAVTAAQRKGEAVETSKKWAAGQNK--QHVVTKNTAKLDR 62
Query: 70 DTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTK 129
+TE L+H RVP E+ K I Q R +K LTQ LA INEKPQ+I EYE GKAIPN Q++ K
Sbjct: 63 ETEELSHQRVPLEVGKVIQQGRQNKGLTQKDLATKINEKPQIIAEYECGKAIPNNQVMGK 122
Query: 130 LERALGVKLRGK 141
+ERA+G+KLRGK
Sbjct: 123 IERAIGLKLRGK 134
>sp|Q8TG23|MBF1_YARLI Putative multi-protein-binding factor 1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=MBF1 PE=3 SV=1
Length = 152
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 7 ITQDWEP-VVIKKKA------PNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSS 59
++ DWE VI +A P A K + +NAA R+G + T +K + +K
Sbjct: 1 MSDDWESKTVIGSRARVGGGGPRATVAKTQAEINAAMRSGNVLSTDKKYASANSKDGGDG 60
Query: 60 TSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119
L K+D + +A +V + + KAI++ R++K LTQ +LA INEKPQV+ +YESG+
Sbjct: 61 QRLT--KIDRSDDIIAPPKVEASVGKAIIKGRSEKGLTQKELAVKINEKPQVVNDYESGR 118
Query: 120 AIPNQQILTKLERALGVKLRGK 141
A PNQQ+L+K+ER LG+KLRGK
Sbjct: 119 AQPNQQVLSKMERVLGIKLRGK 140
>sp|Q5A940|MBF1_CANAL Multiprotein-bridging factor 1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=MBF1 PE=3 SV=1
Length = 151
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 87/142 (61%), Gaps = 9/142 (6%)
Query: 7 ITQDWEPV-VIKKKA------PNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSS 59
++ DW+ V +I +KA P K +NAARRAG + T +K GT S+
Sbjct: 1 MSSDWDSVTIIGQKARVGGGGPRENVAKTSSQLNAARRAGLVVGTEKKY--GTANTKSNP 58
Query: 60 TSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119
KLD + +A +V + KAI QAR +KKLTQ +LA +NEKP VI +YE+G+
Sbjct: 59 EGQRLTKLDATDDVVAVKKVDVSVGKAIQQARQEKKLTQKELATKVNEKPNVINDYEAGR 118
Query: 120 AIPNQQILTKLERALGVKLRGK 141
AIPNQQ+L KLERALGVKLRGK
Sbjct: 119 AIPNQQLLAKLERALGVKLRGK 140
>sp|Q6CIP4|MBF1_KLULA Multiprotein-bridging factor 1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=MBF1 PE=3 SV=2
Length = 150
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 9/139 (6%)
Query: 10 DWEP-VVIKKK------APNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSL 62
+WEP VI +K P + + +N ARR+G + +V K + GT + SS
Sbjct: 3 EWEPSTVIGRKVRIGGGGPRQQVARTQGQINEARRSGM-VLSVDKKY-GTTNSKSSPEGQ 60
Query: 63 NTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIP 122
K+D +T+ + ++ + KAI + R DK LTQ LA INEKP ++ +YESG+ IP
Sbjct: 61 RLTKVDRETDIVKPKKIDVSVGKAIQKGRQDKNLTQKDLATKINEKPTIVNDYESGRGIP 120
Query: 123 NQQILTKLERALGVKLRGK 141
NQQIL K+ERALG+KLRGK
Sbjct: 121 NQQILGKMERALGIKLRGK 139
>sp|Q6BXQ8|MBF1_DEBHA Multiprotein-bridging factor 1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=MBF1 PE=3 SV=1
Length = 150
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 84/139 (60%), Gaps = 9/139 (6%)
Query: 10 DWEPV-VIKKKA------PNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSL 62
DW+ V +I +KA P K + +NAARR+G + T +K + K+ L
Sbjct: 3 DWDSVTIIGQKARIGGGGPRQNVAKTQAELNAARRSGNVVGTEKKYGSTNTKSNPEGQRL 62
Query: 63 NTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIP 122
KLD + + ++ + KAI QAR +KKLTQ LA INEKP VI +YE+G+A+P
Sbjct: 63 T--KLDAVDDVVPTKKLDMNVGKAIQQARQEKKLTQKDLATKINEKPNVINDYEAGRAVP 120
Query: 123 NQQILTKLERALGVKLRGK 141
NQQ+L KLERALGVKLRGK
Sbjct: 121 NQQLLGKLERALGVKLRGK 139
>sp|Q752P7|MBF1_ASHGO Multiprotein-bridging factor 1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MBF1
PE=3 SV=1
Length = 152
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 88/142 (61%), Gaps = 9/142 (6%)
Query: 7 ITQDWEP-VVIKKKAPNAATKKDEKV------VNAARRAGADIETVRKSHAGTNKAASSS 59
++ DW+ VI ++ + ++V +NAARRAG + +V K +A +N A++
Sbjct: 1 MSSDWDTNTVIGQRVRTGGSGPRQQVARTQGQINAARRAGL-VLSVDKKYASSNTKANNE 59
Query: 60 TSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119
T +D +T+ + ++ + +AI + R DK +TQ LA INEKP VI +YE+G+
Sbjct: 60 GQRLT-MVDRETDIVKPKKLDPSVGRAIAKGRGDKGMTQKDLATRINEKPTVINDYEAGR 118
Query: 120 AIPNQQILTKLERALGVKLRGK 141
AIPNQQIL K+ERALGVKLRGK
Sbjct: 119 AIPNQQILAKMERALGVKLRGK 140
>sp|Q6FJN0|MBF1_CANGA Multiprotein-bridging factor 1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MBF1 PE=3 SV=1
Length = 151
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 82/139 (58%), Gaps = 9/139 (6%)
Query: 10 DWEP-VVIKKKA------PNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSL 62
DWE VI +KA P A + + +NAARR G + +K K + L
Sbjct: 3 DWESHTVIGQKARAGGSGPRANVARTQGQINAARRQGLVLSVDKKYGTANTKGDAEGQRL 62
Query: 63 NTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIP 122
K+D +T+ + ++ + + K I + R +KK++Q LA INEKP VI +YE+G+AIP
Sbjct: 63 T--KVDRETDIVKPKKLDANVGKTIARVRTEKKMSQKDLATKINEKPTVINDYEAGRAIP 120
Query: 123 NQQILTKLERALGVKLRGK 141
NQQ+L K+ERALGVKLRGK
Sbjct: 121 NQQVLGKMERALGVKLRGK 139
>sp|O14467|MBF1_YEAST Multiprotein-bridging factor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MBF1 PE=1 SV=2
Length = 151
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 84/138 (60%), Gaps = 9/138 (6%)
Query: 10 DWEP-VVIKKKA------PNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSL 62
DW+ +I +A P A + + +NAARR G + +V K + TN +
Sbjct: 3 DWDTNTIIGSRARAGGSGPRANVARSQGQINAARRQGL-VVSVDKKYGSTNTRGDNEGQR 61
Query: 63 NTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIP 122
T K+D +T+ + ++ + +AI +AR DKK++Q LA INEKP V+ +YE+ +AIP
Sbjct: 62 LT-KVDRETDIVKPKKLDPNVGRAISRARTDKKMSQKDLATKINEKPTVVNDYEAARAIP 120
Query: 123 NQQILTKLERALGVKLRG 140
NQQ+L+KLERALGVKLRG
Sbjct: 121 NQQVLSKLERALGVKLRG 138
>sp|O94700|MBF1_SCHPO Multiprotein-bridging factor 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mbf1 PE=3 SV=1
Length = 148
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 10 DWEPV--VIKKKAPNAATK--KDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTR 65
DW+ V + + P A T K + +N+ARRAGA + T +K G + L
Sbjct: 3 DWDTVTKIGSRAGPGARTHVAKTQSQINSARRAGAIVGTEKKYATGNKSQDPAGQHLT-- 60
Query: 66 KLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQ 125
K+D + E + +AI + R K Q L+Q INEKPQV+ +YESG+AIPNQQ
Sbjct: 61 KIDRENEVKPPSTTGRSVAQAIQKGRQAKGWAQKDLSQRINEKPQVVNDYESGRAIPNQQ 120
Query: 126 ILTKLERALGVKLRGK 141
+L+K+ERALG+KLRG+
Sbjct: 121 VLSKMERALGIKLRGQ 136
>sp|P14327|VSH7_DICDI Vegetative-specific protein H7 OS=Dictyostelium discoideum
GN=cinD-1 PE=2 SV=2
Length = 104
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 67/101 (66%), Gaps = 5/101 (4%)
Query: 41 DIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQ 100
D++T K AG NK + N +K+ E E++A + + +AI +ARN K+TQ +
Sbjct: 2 DVQT--KYGAGQNKVLGGA---NQKKIVESEEDIALPELNPSVPQAIQRARNALKMTQKE 56
Query: 101 LAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRGK 141
LA INE+P VI EYESG AIP+Q +L+KLE+AL VKLRGK
Sbjct: 57 LAFKINERPGVINEYESGSAIPSQAVLSKLEKALNVKLRGK 97
>sp|P0CO30|MBF1_CRYNJ Multiprotein-bridging factor 1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=MBF1 PE=3 SV=1
Length = 150
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 10 DWE-PVVI--KKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRK 66
DW+ P VI +++ P A +NAA+RAG I + K AG +K + + K
Sbjct: 3 DWDKPTVIGFRQQKPTVAKGS---TLNAAQRAGLVISSESKG-AGQSKGPADHQRIA--K 56
Query: 67 LDEDTENLAHDRVPSELKKAIVQAR------NDKKLTQSQLAQLINEKPQVIQEYESGKA 120
LD D ++V +++ KA+ AR K +TQ +LA +N KPQ I + ESG+A
Sbjct: 57 LDRDDAPKPPEKVSADVGKAVATARMAIKNAEGKSMTQKELATSVNAKPQDIADLESGRA 116
Query: 121 IPNQQILTKLERALGVKLRGKK 142
+P+Q +L KLER L VKLRG K
Sbjct: 117 VPDQALLGKLERKLNVKLRGAK 138
>sp|P0CO31|MBF1_CRYNB Multiprotein-bridging factor 1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=MBF1 PE=3 SV=1
Length = 150
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 79/142 (55%), Gaps = 15/142 (10%)
Query: 10 DWE-PVVI--KKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRK 66
DW+ P VI +++ P A +NAA+RAG I + K AG +K + + K
Sbjct: 3 DWDKPTVIGFRQQKPTVAKGS---TLNAAQRAGLVISSESKG-AGQSKGPADHQRIA--K 56
Query: 67 LDEDTENLAHDRVPSELKKAIVQAR------NDKKLTQSQLAQLINEKPQVIQEYESGKA 120
LD D ++V +++ KA+ AR K +TQ +LA +N KPQ I + ESG+A
Sbjct: 57 LDRDDAPKPPEKVSADVGKAVATARMAIKNAEGKSMTQKELATSVNAKPQDIADLESGRA 116
Query: 121 IPNQQILTKLERALGVKLRGKK 142
+P+Q +L KLER L VKLRG K
Sbjct: 117 VPDQALLGKLERKLNVKLRGAK 138
>sp|Q871W6|MBF1_NEUCR Multiprotein-bridging factor 1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=mbf-1 PE=3 SV=1
Length = 160
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 20 APNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRV 79
P + + +NAA+R+G I T +K AG + +D + + V
Sbjct: 21 GPRETVVRGKSALNAAQRSGNIIATEKKYAAGNTASKPGVEGQRLTMVDRSDDIVKPKTV 80
Query: 80 PSELKKAIVQARN-----DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERAL 134
E+ AI +AR+ DK +TQ +LA N +I +YE G+ +P+Q++L LER L
Sbjct: 81 SKEVGAAIQKARSAIMIGDKAMTQKELATRCNSTQAIIAQYERGEGVPDQKLLGNLERVL 140
Query: 135 GVKLRG 140
VKLRG
Sbjct: 141 NVKLRG 146
>sp|Q4WX89|MBF1_ASPFU Multiprotein-bridging factor 1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=mbf1 PE=3
SV=1
Length = 154
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 13/142 (9%)
Query: 10 DWEPVV-IKKK-----APNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLN 63
DW+ V I K AP + + +NAA+R G I T +K G AA + ++
Sbjct: 3 DWDSVTRIGAKHRAGAAPRETVVRGKSALNAAQRQGLVIATEKKYATGN--AAGKTAAME 60
Query: 64 TR---KLDEDTENLAHDRVPSELKKAIVQARNDK--KLTQSQLAQLINEKPQVIQEYESG 118
+ K+D + + V ++ AI + RN++ K+TQ +LA N VIQ++E G
Sbjct: 61 GQHLTKVDRSDDIVKPKTVGLQVADAIKKRRNEEGYKMTQKELATKCNTTITVIQDFERG 120
Query: 119 KAIPNQQILTKLERALGVKLRG 140
A P+Q++L+ +ER L +KLRG
Sbjct: 121 TAAPDQKVLSAMERVLNIKLRG 142
>sp|Q5B8Y4|MBF1_EMENI Multiprotein-bridging factor 1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=mbf1
PE=3 SV=1
Length = 154
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Query: 27 KDEKVVNAARRAGADIETVRKSHAGTNKA-ASSSTSLNTRKLDEDTENLAHDRVPSELKK 85
K + +NAA+R G + T +K +G + AS+ + K+D + + V ++
Sbjct: 26 KGKSALNAAQRQGLVVGTEKKFASGNSAGRASAVEGQHLTKVDRSDDIVKPKTVGLQVAD 85
Query: 86 AIVQARNDK--KLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140
AI + R D+ K+TQ +LA N VIQ++E G A P+Q++L+ +ER L +KLRG
Sbjct: 86 AIKKRRTDEGYKMTQKELATKCNTTVTVIQDFERGTAAPDQKVLSAMERVLNIKLRG 142
>sp|Q53IP3|MBF1_GIBFU Multiprotein-bridging factor 1 OS=Gibberella fujikuroi GN=MBF1 PE=3
SV=1
Length = 152
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 10 DWEPVV-IKKKAPNAATKKDEKVV------NAARRAGADIETVRKSHAGTNKAASSSTSL 62
DW+ I + + + E VV NAA+RAG T K ++ N A S+
Sbjct: 3 DWDTTTXIGSRTRGSGAAQRETVVRGKAALNAAQRAGG--LTTEKKYSSAN-AGSAPEGQ 59
Query: 63 NTRKLDEDTENLAHDRVPSELKKAIVQARN--DKKLTQSQLAQLINEKPQVIQEYESGKA 120
K+D + + + + + I +AR + K+TQ LA N ++ ++E G A
Sbjct: 60 RMTKVDRSDDIIKPNTIGKTVGDVISKARQQVEPKMTQKDLATRCNTTQAIVADFERGTA 119
Query: 121 IPNQQILTKLERALGVKLRG 140
P+Q++L +ER L VKLRG
Sbjct: 120 APDQKVLGAMERVLNVKLRG 139
>sp|Q52BY4|MBF1_MAGO7 Multiprotein-bridging factor 1 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=MBF1 PE=3 SV=1
Length = 161
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 9/145 (6%)
Query: 7 ITQDWEPVV--------IKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASS 58
+ DW+ V P T K++ +NAA+RAG + T +K + + +
Sbjct: 1 MADDWDTVTKIGSRVGGGGGGGPRLTTIKNKSQLNAAQRAGGIVGTEKKYGTANSSRSEA 60
Query: 59 STSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKL-TQSQLAQLINEKPQVIQEYES 117
+ K+D + + EL I+Q R KKL + + + + + + E
Sbjct: 61 GSGQFLTKVDRSDDIVKPKTGDKELGMYIMQNREQKKLGNRLEFGKKVGINEKDLARIEK 120
Query: 118 GKAIPNQQILTKLERALGVKLRGKK 142
G+ Q + ++ER L + +RG K
Sbjct: 121 GEVPITQDQVNRIERGLEMFIRGVK 145
>sp|O30257|Y2414_ARCFU Uncharacterized HTH-type transcriptional regulator AF_2414
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2414 PE=4 SV=1
Length = 229
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 72 ENLAHDRVPSE-LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKL 130
E + D V SE +A+ + R+ +QS LA+ + P VI +YESG+ P L K
Sbjct: 8 ERICGDIVLSENSGEALRKWRSIFNASQSDLARKLGISPSVISDYESGRRKPGTAFLKKF 67
Query: 131 ERALGVKLRGKK 142
AL ++L G++
Sbjct: 68 VCAL-IELDGER 78
>sp|O31943|YONR_BACSU SPBc2 prophage-derived uncharacterized HTH-type transcriptional
regulator YonR OS=Bacillus subtilis (strain 168) GN=yonR
PE=4 SV=1
Length = 108
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 89 QARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGV 136
+ R K +Q ++A + Q +YE GKA P+ + LTKL LGV
Sbjct: 8 KCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGV 55
>sp|Q5UR40|YR559_MIMIV Uncharacterized HTH-type transcriptional regulator R559
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R559 PE=4
SV=1
Length = 226
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 45 VRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQL 104
VR++ G N+ ++ S+ + ++ D ++ ++ + I RN LTQ+ L +
Sbjct: 127 VRRNDGGKNRVNFTAQSV-QKGINVDDQDFRPKMFTPKMGREISALRNKLGLTQTDLGKR 185
Query: 105 INEKPQVIQEYESGKAIP-NQQ--ILTKLERALGVK 137
IN VI+ E+G + N Q ++ L ALG++
Sbjct: 186 INVDANVIRNIETGDLVAFNVQDPMVRSLAYALGIR 221
>sp|A6UEE9|MNME_SINMW tRNA modification GTPase MnmE OS=Sinorhizobium medicae (strain
WSM419) GN=mnmE PE=3 SV=1
Length = 440
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 24/142 (16%)
Query: 2 AGIGPITQDWEPVVI-------KKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNK 54
AG+ I +D +VI K NA ++D +V D+ +V S AG +
Sbjct: 208 AGVAEIIRDGLKIVIAGEPNAGKSSLLNALAQRDIAIVTEIAGTTRDVLSVDLSLAGFSV 267
Query: 55 AASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQ--VI 112
+ L R+ DE E ++ I +AR + + + L L++EKP +
Sbjct: 268 KLFDTAGL--RETDEVVE-----------REGIRRAR--QVIADADLVLLLSEKPSDFRL 312
Query: 113 QEYESGKAIPNQQILTKLERAL 134
E++ GK++P ++ TK++R +
Sbjct: 313 DEWQPGKSVPVIRVATKVDRPM 334
>sp|P89034|RDRP_PMVK RNA-directed RNA polymerase OS=Panicum mosaic virus (strain United
States/Kansas 109S) GN=ORF1 PE=3 SV=1
Length = 992
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 66 KLDEDTENLAHDRVPSELKKAIVQAR---NDKKLTQSQLAQLI 105
+L+E+++ HDR+ EL K +++ ND K+ +S++AQ +
Sbjct: 252 RLEEESKGFIHDRMEDELTKIVLEPAEIDNDGKVLKSEVAQYL 294
>sp|Q58940|Y1545_METJA Uncharacterized HTH-type transcriptional regulator MJ1545
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1545
PE=4 SV=1
Length = 241
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119
KA+ + RN + Q +LA+ +N P VI +YE G+
Sbjct: 30 KALKKWRNLFNIQQIELAKYLNVSPSVISDYEVGR 64
>sp|Q9KMA5|HIGA2_VIBCH Antitoxin igA-2 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=higA-2 PE=2 SV=1
Length = 104
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKL 130
IV R +++ A+L++ + ++ +E G+++PN Q +T L
Sbjct: 45 IVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVPNGQAVTLL 88
>sp|Q37906|RPC1_BPD3 Repressor protein CI OS=Pseudomonas phage D3 GN=CI PE=4 SV=1
Length = 223
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGV 136
ELK I AR KLTQ+QLAQ + I E GK+ + +L A GV
Sbjct: 2 ELKDRIKAARKHAKLTQAQLAQRVGLDQTSISNLEQGKS-QGTSYIAQLASACGV 55
>sp|Q4JVD6|Y1057_CORJK Probable transcriptional regulatory protein jk1057
OS=Corynebacterium jeikeium (strain K411) GN=jk1057 PE=3
SV=1
Length = 251
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 10 DWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRK 66
+WE ++ + PN E + + RA D+ T + G A S + L TRK
Sbjct: 82 NWETIMYEGYGPNGVAMLIECLTDNRNRATTDVRTAMNKNGGNMADAGSVSYLFTRK 138
>sp|P00347|HMDH_CRIGR 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Cricetulus
griseus GN=HMGCR PE=1 SV=1
Length = 887
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 31/153 (20%)
Query: 6 PITQDWEPVVIKKKAPNAATKKD-------EKVVNAARRAGAD------------IETVR 46
PIT PVV KKAP+ +++ EK+ + G +ET
Sbjct: 353 PITS---PVVTPKKAPDNCCRREPLLVRRSEKLSSVEEEPGVSQDRKVEVIKPLVVETES 409
Query: 47 KSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQA--RNDKKLTQSQLAQL 104
S A AS ++ + E L + P+E I+++ + K L+ +++ QL
Sbjct: 410 ASRATFVLGASGTSPPVAARTQELEIELPSEPRPNEECLQILESAEKGAKFLSDAEIIQL 469
Query: 105 INEK-------PQVIQEYESGKAIPNQQILTKL 130
+N K +++ +E G +I Q + TKL
Sbjct: 470 VNAKHIPAYKLETLMETHERGVSIRRQLLSTKL 502
>sp|O57233|RP35_VACCA DNA-directed RNA polymerase 35 kDa subunit OS=Vaccinia virus
(strain Ankara) GN=RPO35 PE=3 SV=1
Length = 305
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 67 LDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI 126
+D+DT ++ P+ELK+ ++ + +L SQ +LI + SG I N+ I
Sbjct: 104 IDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIELI--------AFSSGTVI-NEDI 154
Query: 127 LTKL 130
++KL
Sbjct: 155 VSKL 158
>sp|P33812|RP35_VAR67 DNA-directed RNA polymerase 35 kDa subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=RPO35 PE=3 SV=1
Length = 305
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 67 LDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI 126
+D+DT ++ P+ELK+ ++ + +L SQ +LI + SG I N+ I
Sbjct: 104 IDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIELI--------AFSSGTVI-NEDI 154
Query: 127 LTKL 130
++KL
Sbjct: 155 VSKL 158
>sp|Q8CPN3|ODPA_STAES Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1
Length = 370
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 68 DEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEK-PQ-VIQEYE 116
+ED EN +R SE+K AI +A N +K T + L ++ E+ PQ + ++YE
Sbjct: 312 NEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQYE 362
>sp|Q5HQ76|ODPA_STAEQ Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3
SV=1
Length = 370
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 68 DEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEK-PQ-VIQEYE 116
+ED EN +R SE+K AI +A N +K T + L ++ E+ PQ + ++YE
Sbjct: 312 NEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQYE 362
>sp|P24757|RP35_VACCW DNA-directed RNA polymerase 35 kDa subunit OS=Vaccinia virus
(strain Western Reserve) GN=RPO35 PE=1 SV=1
Length = 305
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 67 LDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI 126
+D+DT ++ P+ELK+ ++ + +L SQ +LI + SG I N+ I
Sbjct: 104 IDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIELI--------AFSSGTVI-NEDI 154
Query: 127 LTKL 130
++KL
Sbjct: 155 VSKL 158
>sp|Q77TH6|RP35_VACCT DNA-directed RNA polymerase 35 kDa subunit OS=Vaccinia virus
(strain Tian Tan) GN=RPO35 PE=3 SV=1
Length = 305
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 62 LNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAI 121
+ +D+DT ++ P+ELK+ ++ + +L SQ +LI + SG I
Sbjct: 99 FDYYIIDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIELI--------AFSSGTVI 150
Query: 122 PNQQILTKL 130
N+ I++KL
Sbjct: 151 -NEDIVSKL 158
>sp|P21087|RP35_VACCC DNA-directed RNA polymerase 35 kDa subunit OS=Vaccinia virus
(strain Copenhagen) GN=RPO35 PE=3 SV=1
Length = 305
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 62 LNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAI 121
+ +D+DT ++ P+ELK+ ++ + +L SQ +LI + SG I
Sbjct: 99 FDYYIIDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIELI--------AFSSGTVI 150
Query: 122 PNQQILTKL 130
N+ I++KL
Sbjct: 151 -NEDIVSKL 158
>sp|Q6RZF4|RP35_RABPU DNA-directed RNA polymerase 35 kDa subunit OS=Rabbitpox virus
(strain Utrecht) GN=RPO35 PE=3 SV=1
Length = 305
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Query: 67 LDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI 126
+D+DT ++ P+ELK+ ++ + +L SQ +LI + SG I N+ I
Sbjct: 104 IDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIELI--------AFSSGTVI-NEDI 154
Query: 127 LTKL 130
++KL
Sbjct: 155 VSKL 158
>sp|A0LUK8|Y1346_ACIC1 Probable transcriptional regulatory protein Acel_1346
OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
GN=Acel_1346 PE=3 SV=1
Length = 248
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 2 AGIGPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTS 61
AG+ DWEP++ + P E + + RA +++ T + G+ S
Sbjct: 74 AGLEAGGTDWEPIIYEGYGPGGVALLIECLTDNRNRAASEVRTTMTRNGGSMADPGSVAY 133
Query: 62 LNTRK 66
L RK
Sbjct: 134 LFNRK 138
>sp|Q9X100|GATB_THEMA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=gatB PE=1 SV=1
Length = 482
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 78 RVPSEL--KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119
++PS++ +K + Q ND+KL + + + + + P+ +Q+Y+SGK
Sbjct: 405 KMPSQIVEEKGLTQI-NDEKLIEELVKKAMEQNPKAVQDYKSGK 447
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.123 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,498,460
Number of Sequences: 539616
Number of extensions: 1623936
Number of successful extensions: 7007
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 6911
Number of HSP's gapped (non-prelim): 192
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)