Query 032366
Match_columns 142
No_of_seqs 396 out of 2492
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 21:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvl_A TRMBF1; coactivator, he 99.7 6.8E-17 2.3E-21 111.4 9.6 84 58-141 10-95 (107)
2 2ewt_A BLDD, putative DNA-bind 99.6 3.7E-15 1.3E-19 94.1 7.8 62 79-140 5-68 (71)
3 1x57_A Endothelial differentia 99.6 5.5E-15 1.9E-19 98.1 8.5 65 76-140 7-71 (91)
4 3s8q_A R-M controller protein; 99.6 5.7E-15 2E-19 96.0 7.4 61 79-139 8-68 (82)
5 3qq6_A HTH-type transcriptiona 99.6 4E-15 1.4E-19 96.8 6.5 61 79-139 7-68 (78)
6 1y7y_A C.AHDI; helix-turn-heli 99.6 9.6E-15 3.3E-19 92.6 8.1 62 79-140 10-71 (74)
7 3kz3_A Repressor protein CI; f 99.6 6.9E-15 2.4E-19 95.6 7.4 61 80-140 10-70 (80)
8 3g5g_A Regulatory protein; tra 99.6 7.3E-15 2.5E-19 100.0 6.8 61 79-139 25-85 (99)
9 3f6w_A XRE-family like protein 99.6 9.3E-15 3.2E-19 95.1 7.0 60 80-139 12-71 (83)
10 3b7h_A Prophage LP1 protein 11 99.5 1.2E-14 4E-19 93.2 7.1 60 80-139 5-65 (78)
11 2k9q_A Uncharacterized protein 99.5 4.1E-15 1.4E-19 95.9 4.8 58 82-139 2-59 (77)
12 2b5a_A C.BCLI; helix-turn-heli 99.5 1.5E-14 5.2E-19 92.4 7.4 61 79-139 7-67 (77)
13 3omt_A Uncharacterized protein 99.5 3.3E-15 1.1E-19 95.3 4.0 58 83-140 9-66 (73)
14 2a6c_A Helix-turn-helix motif; 99.5 2.6E-14 9E-19 93.7 8.0 62 78-139 14-76 (83)
15 2r1j_L Repressor protein C2; p 99.5 1.5E-14 5E-19 90.2 6.3 58 82-139 5-62 (68)
16 2kpj_A SOS-response transcript 99.5 2.7E-14 9.3E-19 95.5 8.0 61 79-139 6-66 (94)
17 3eus_A DNA-binding protein; st 99.5 2.9E-14 1E-18 94.2 8.0 58 81-138 13-70 (86)
18 3ivp_A Putative transposon-rel 99.5 3.5E-14 1.2E-18 99.6 8.3 60 80-139 10-69 (126)
19 3vk0_A NHTF, transcriptional r 99.5 2.4E-14 8.2E-19 99.1 7.3 62 78-139 17-78 (114)
20 1adr_A P22 C2 repressor; trans 99.5 2.4E-14 8.3E-19 91.1 6.6 58 82-139 5-62 (76)
21 3t76_A VANU, transcriptional r 99.5 3.6E-14 1.2E-18 95.1 7.6 57 83-140 25-81 (88)
22 2wiu_B HTH-type transcriptiona 99.5 2.3E-14 8E-19 93.9 6.4 61 79-139 9-69 (88)
23 3lfp_A CSP231I C protein; tran 99.5 2.2E-14 7.6E-19 96.6 6.1 58 83-140 2-63 (98)
24 3op9_A PLI0006 protein; struct 99.5 2.5E-14 8.4E-19 98.6 6.5 60 80-139 7-66 (114)
25 1lmb_3 Protein (lambda repress 99.5 4.6E-14 1.6E-18 93.5 7.4 62 79-140 14-75 (92)
26 4ghj_A Probable transcriptiona 99.5 6.7E-14 2.3E-18 96.1 7.9 59 78-138 32-90 (101)
27 2xi8_A Putative transcription 99.5 1.5E-14 5.1E-19 89.6 3.8 57 83-139 2-58 (66)
28 3f52_A CLP gene regulator (CLG 99.5 4.6E-14 1.6E-18 97.7 6.4 62 78-139 24-85 (117)
29 3bs3_A Putative DNA-binding pr 99.5 2.7E-14 9.2E-19 91.0 4.8 58 83-140 11-68 (76)
30 1r69_A Repressor protein CI; g 99.5 5.5E-14 1.9E-18 87.9 6.1 56 83-139 2-57 (69)
31 3mlf_A Transcriptional regulat 99.5 1.5E-14 5E-19 100.3 3.5 61 80-140 21-81 (111)
32 3trb_A Virulence-associated pr 99.5 1E-13 3.4E-18 95.5 7.3 58 82-139 13-71 (104)
33 1zug_A Phage 434 CRO protein; 99.4 1.3E-13 4.6E-18 86.5 5.9 57 82-139 3-59 (71)
34 2wus_R RODZ, putative uncharac 99.4 1.1E-13 3.9E-18 96.5 5.8 60 80-139 5-70 (112)
35 2l49_A C protein; P2 bacteriop 99.4 8.8E-14 3E-18 93.2 4.9 58 82-139 4-63 (99)
36 3fmy_A HTH-type transcriptiona 99.4 1.2E-13 4.2E-18 88.7 5.4 56 83-139 12-67 (73)
37 2ef8_A C.ECOT38IS, putative tr 99.4 3.5E-13 1.2E-17 87.3 7.5 60 80-139 8-71 (84)
38 2ict_A Antitoxin HIGA; helix-t 99.4 2.3E-13 7.9E-18 90.7 6.5 58 82-139 8-65 (94)
39 2o38_A Hypothetical protein; a 99.4 2.8E-13 9.6E-18 95.4 7.1 61 79-139 37-98 (120)
40 1b0n_A Protein (SINR protein); 99.4 2.6E-13 8.8E-18 92.4 6.7 57 83-139 2-59 (111)
41 2ppx_A AGR_C_3184P, uncharacte 99.4 8.7E-14 3E-18 94.0 4.1 58 81-139 29-86 (99)
42 3cec_A Putative antidote prote 99.4 2.8E-13 9.4E-18 92.0 6.6 59 81-139 17-75 (104)
43 3fym_A Putative uncharacterize 99.4 1.4E-13 4.7E-18 98.0 5.2 58 82-139 3-66 (130)
44 1y9q_A Transcriptional regulat 99.4 5.8E-13 2E-17 99.1 8.5 61 79-139 8-68 (192)
45 2bnm_A Epoxidase; oxidoreducta 99.4 6.8E-13 2.3E-17 99.0 8.1 61 79-139 7-68 (198)
46 2eby_A Putative HTH-type trans 99.4 4.4E-13 1.5E-17 92.1 6.0 58 82-139 10-68 (113)
47 2ofy_A Putative XRE-family tra 99.4 1.2E-12 4.3E-17 85.5 6.9 58 80-139 14-72 (86)
48 3kxa_A NGO0477 protein, putati 99.4 4.6E-13 1.6E-17 96.6 4.5 59 81-139 67-125 (141)
49 3r1f_A ESX-1 secretion-associa 99.3 2.7E-12 9.4E-17 92.1 7.1 59 81-139 6-76 (135)
50 3bd1_A CRO protein; transcript 99.3 1.3E-12 4.5E-17 84.6 3.7 51 86-138 3-55 (79)
51 3qwg_A ESX-1 secretion-associa 99.3 5.4E-12 1.9E-16 89.3 7.1 58 82-139 5-74 (123)
52 3u3w_A Transcriptional activat 99.3 3.7E-12 1.3E-16 98.6 6.6 58 81-139 4-61 (293)
53 3pxp_A Helix-turn-helix domain 99.2 9.2E-12 3.1E-16 99.8 6.8 60 81-140 5-71 (292)
54 4ich_A Transcriptional regulat 99.2 1.1E-12 3.9E-17 103.5 0.0 60 80-139 28-87 (311)
55 3o9x_A Uncharacterized HTH-typ 99.2 2.3E-11 8E-16 85.9 5.2 55 84-139 73-127 (133)
56 2awi_A PRGX; repressor, pherom 99.2 1.2E-11 4.1E-16 99.3 4.0 57 82-139 3-59 (317)
57 2p5t_A Putative transcriptiona 99.2 3.3E-12 1.1E-16 93.1 0.0 57 83-139 2-58 (158)
58 3bdn_A Lambda repressor; repre 99.2 2E-11 7E-16 93.2 4.4 60 80-139 15-74 (236)
59 2qfc_A PLCR protein; TPR, HTH, 99.1 1.2E-11 4.2E-16 95.6 2.3 58 81-139 4-61 (293)
60 2l1p_A DNA-binding protein SAT 99.1 4.6E-11 1.6E-15 78.6 4.3 55 78-136 17-71 (83)
61 1neq_A DNA-binding protein NER 99.1 1.2E-10 4E-15 75.5 5.0 53 84-139 11-63 (74)
62 2fjr_A Repressor protein CI; g 99.0 3.6E-10 1.2E-14 83.6 6.4 58 79-139 6-63 (189)
63 2auw_A Hypothetical protein NE 98.8 8.9E-09 3.1E-13 76.6 7.4 46 84-129 92-137 (170)
64 1dw9_A Cyanate lyase; cyanate 98.7 5.5E-08 1.9E-12 71.3 7.4 59 81-139 12-70 (156)
65 1nr3_A MTH0916, DNA-binding pr 98.6 8.6E-11 2.9E-15 82.4 -9.0 49 91-140 2-56 (122)
66 1rzs_A Antirepressor, regulato 98.5 2.6E-07 9E-12 57.1 5.2 41 95-138 10-50 (61)
67 1uxc_A FRUR (1-57), fructose r 98.3 1.6E-06 5.3E-11 54.6 6.0 44 96-139 1-50 (65)
68 2h8r_A Hepatocyte nuclear fact 98.3 2.9E-06 9.9E-11 65.4 7.8 52 79-130 28-79 (221)
69 1zx4_A P1 PARB, plasmid partit 98.2 3.3E-07 1.1E-11 69.3 2.3 54 80-134 10-79 (192)
70 3g7d_A PHPD; non heme Fe(II) d 98.2 1.6E-06 5.5E-11 70.5 5.9 57 83-139 231-288 (443)
71 2l8n_A Transcriptional repress 98.1 5E-06 1.7E-10 52.5 5.7 45 95-139 9-56 (67)
72 1ic8_A Hepatocyte nuclear fact 98.1 1.3E-05 4.3E-10 60.7 8.1 50 79-128 27-76 (194)
73 2pij_A Prophage PFL 6 CRO; tra 98.0 5.4E-06 1.8E-10 51.1 4.3 38 86-124 5-42 (67)
74 1s4k_A Putative cytoplasmic pr 98.0 2.8E-05 9.4E-10 54.3 7.5 49 84-132 5-55 (120)
75 2hin_A GP39, repressor protein 97.6 0.00013 4.5E-09 46.6 5.3 41 97-138 12-52 (71)
76 1jhf_A LEXA repressor; LEXA SO 97.5 8.7E-05 3E-09 55.1 4.6 38 80-117 8-48 (202)
77 2l0k_A Stage III sporulation p 97.4 0.00016 5.6E-09 48.4 4.7 52 85-136 10-62 (93)
78 2cw1_A SN4M; lambda CRO fold, 97.3 0.00025 8.6E-09 44.4 4.3 34 87-122 7-40 (65)
79 1zs4_A Regulatory protein CII; 97.1 0.00052 1.8E-08 45.1 4.3 40 95-138 24-63 (83)
80 1tc3_C Protein (TC3 transposas 97.0 0.0028 9.7E-08 35.4 6.0 37 81-118 8-44 (51)
81 1xwr_A Regulatory protein CII; 96.9 5.5E-05 1.9E-09 51.2 -2.1 45 92-138 20-64 (97)
82 2x48_A CAG38821; archeal virus 96.9 0.0028 9.7E-08 37.2 5.5 35 82-117 19-53 (55)
83 4ich_A Transcriptional regulat 96.8 0.00065 2.2E-08 53.0 3.3 102 15-120 30-165 (311)
84 2ao9_A Phage protein; structur 96.6 0.003 1E-07 46.0 5.3 38 95-134 48-86 (155)
85 1jhg_A Trp operon repressor; c 96.5 0.0058 2E-07 41.5 5.5 41 95-135 58-98 (101)
86 1jko_C HIN recombinase, DNA-in 96.4 0.0045 1.5E-07 35.1 4.2 33 86-119 13-45 (52)
87 1u78_A TC3 transposase, transp 96.0 0.05 1.7E-06 37.0 8.4 76 30-117 24-101 (141)
88 2hsg_A Glucose-resistance amyl 95.7 0.017 5.9E-07 44.8 5.9 44 95-138 2-48 (332)
89 3kjx_A Transcriptional regulat 95.5 0.019 6.7E-07 44.8 5.5 47 93-139 8-57 (344)
90 2elh_A CG11849-PA, LD40883P; s 95.5 0.028 9.5E-07 36.2 5.3 39 78-117 22-60 (87)
91 2w7n_A TRFB transcriptional re 95.4 0.033 1.1E-06 37.7 5.5 35 83-117 22-56 (101)
92 2glo_A Brinker CG9653-PA; prot 95.4 0.036 1.2E-06 33.1 5.2 38 79-117 6-47 (59)
93 2ovg_A Phage lambda CRO; trans 95.3 0.016 5.4E-07 36.1 3.3 31 87-119 7-37 (66)
94 2jn6_A Protein CGL2762, transp 95.1 0.038 1.3E-06 36.0 5.1 39 79-117 6-45 (97)
95 3h5t_A Transcriptional regulat 95.1 0.02 6.9E-07 45.1 4.2 45 93-137 7-54 (366)
96 1e3o_C Octamer-binding transcr 95.0 0.025 8.5E-07 40.9 4.2 38 81-118 10-53 (160)
97 2csf_A DNA-binding protein SAT 94.9 0.086 2.9E-06 35.5 6.3 60 79-138 18-84 (101)
98 2xsd_C POU domain, class 3, tr 94.8 0.033 1.1E-06 40.5 4.4 48 81-130 16-69 (164)
99 1au7_A Protein PIT-1, GHF-1; c 94.7 0.027 9.1E-07 40.2 3.7 48 81-130 6-59 (146)
100 1x2l_A CUT-like 2, homeobox pr 94.6 0.075 2.6E-06 35.9 5.5 56 80-135 19-81 (101)
101 1pdn_C Protein (PRD paired); p 94.6 0.079 2.7E-06 35.1 5.7 38 79-117 18-55 (128)
102 1u78_A TC3 transposase, transp 94.4 0.091 3.1E-06 35.7 5.9 38 79-117 7-44 (141)
103 1j9i_A GPNU1 DBD;, terminase s 94.4 0.024 8.1E-07 34.9 2.5 23 96-118 3-25 (68)
104 2o20_A Catabolite control prot 94.1 0.0091 3.1E-07 46.5 0.0 45 94-138 4-51 (332)
105 1k78_A Paired box protein PAX5 93.9 0.17 5.8E-06 35.1 6.4 39 78-117 32-70 (149)
106 3d1n_I POU domain, class 6, tr 93.8 0.37 1.3E-05 34.2 8.1 48 81-130 7-60 (151)
107 2jml_A DNA binding domain/tran 93.7 0.17 5.7E-06 32.0 5.6 63 33-105 10-74 (81)
108 3frw_A Putative Trp repressor 93.6 0.17 5.9E-06 34.5 5.7 37 81-117 43-80 (107)
109 2o8x_A Probable RNA polymerase 93.5 0.14 4.9E-06 30.6 4.9 33 85-117 21-53 (70)
110 3me5_A Cytosine-specific methy 93.5 0.11 3.6E-06 44.0 5.6 50 85-136 21-79 (482)
111 1r71_A Transcriptional repress 93.5 0.15 5.1E-06 37.6 5.8 49 80-130 38-86 (178)
112 2p7v_B Sigma-70, RNA polymeras 93.5 0.12 4.2E-06 31.3 4.5 25 93-117 23-47 (68)
113 3l1p_A POU domain, class 5, tr 93.4 0.13 4.3E-06 36.9 5.1 48 81-130 13-66 (155)
114 3hug_A RNA polymerase sigma fa 93.3 0.14 4.9E-06 32.9 4.9 33 85-117 43-75 (92)
115 3kor_A Possible Trp repressor; 93.3 0.14 4.7E-06 35.6 5.0 37 82-118 61-98 (119)
116 1qgp_A Protein (double strande 93.3 0.1 3.5E-06 33.1 4.0 32 85-116 18-52 (77)
117 3eus_A DNA-binding protein; st 93.1 0.07 2.4E-06 33.9 3.0 43 30-79 29-71 (86)
118 2k27_A Paired box protein PAX- 93.1 0.12 4E-06 36.5 4.4 38 79-117 26-63 (159)
119 3h5o_A Transcriptional regulat 93.0 0.017 6E-07 45.0 0.0 45 94-138 3-50 (339)
120 1ku3_A Sigma factor SIGA; heli 93.0 0.2 6.7E-06 30.8 4.9 31 87-117 18-52 (73)
121 1wh6_A CUT-like 2, homeobox pr 92.9 0.19 6.4E-06 33.9 5.0 61 80-140 19-86 (101)
122 1vz0_A PARB, chromosome partit 92.9 0.18 6.2E-06 38.4 5.5 48 81-130 121-168 (230)
123 2ox6_A Hypothetical protein SO 92.8 0.64 2.2E-05 32.8 7.8 40 86-125 11-50 (166)
124 3e7l_A Transcriptional regulat 92.7 0.23 8E-06 29.9 4.9 34 84-117 21-54 (63)
125 1qbj_A Protein (double-strande 92.7 0.18 6.1E-06 32.4 4.6 30 87-116 16-48 (81)
126 1hlv_A CENP-B, major centromer 92.7 0.2 6.8E-06 33.9 5.1 42 78-119 7-49 (131)
127 3dbi_A Sugar-binding transcrip 92.6 0.022 7.4E-07 44.3 0.0 43 96-138 4-49 (338)
128 2jpc_A SSRB; DNA binding prote 92.6 0.15 5.2E-06 29.9 3.9 44 92-135 10-57 (61)
129 2htj_A P fimbrial regulatory p 92.5 0.23 8E-06 31.1 4.8 30 87-116 6-35 (81)
130 2l8n_A Transcriptional repress 92.4 0.17 5.9E-06 31.2 4.0 52 30-105 11-62 (67)
131 2w48_A Sorbitol operon regulat 92.4 0.21 7.1E-06 39.3 5.5 36 82-117 8-43 (315)
132 1k78_A Paired box protein PAX5 92.3 0.46 1.6E-05 32.8 6.7 77 30-119 50-142 (149)
133 2vz4_A Tipal, HTH-type transcr 92.3 0.14 4.9E-06 34.2 3.9 26 95-120 1-27 (108)
134 1x3u_A Transcriptional regulat 92.3 0.72 2.5E-05 28.2 7.0 46 93-138 29-78 (79)
135 3jvd_A Transcriptional regulat 92.3 0.025 8.7E-07 44.1 0.0 45 94-138 5-52 (333)
136 1pdn_C Protein (PRD paired); p 92.2 0.69 2.4E-05 30.3 7.3 74 31-117 36-125 (128)
137 3ulq_B Transcriptional regulat 92.2 0.35 1.2E-05 31.3 5.5 37 79-117 30-66 (90)
138 3bil_A Probable LACI-family tr 92.2 0.027 9.1E-07 44.3 0.0 43 96-138 9-54 (348)
139 1tty_A Sigma-A, RNA polymerase 92.1 0.28 9.4E-06 31.3 4.9 32 86-117 25-60 (87)
140 1uxc_A FRUR (1-57), fructose r 92.1 0.1 3.5E-06 32.1 2.7 22 32-53 4-25 (65)
141 3e3m_A Transcriptional regulat 92.1 0.027 9.4E-07 44.2 0.0 45 94-138 11-58 (355)
142 2dk5_A DNA-directed RNA polyme 92.0 0.15 5.2E-06 33.5 3.6 32 85-116 24-57 (91)
143 1wh8_A CUT-like 2, homeobox pr 92.0 0.28 9.7E-06 33.6 5.0 41 79-119 28-69 (111)
144 2k27_A Paired box protein PAX- 91.9 0.75 2.5E-05 32.1 7.5 79 31-117 44-133 (159)
145 1fse_A GERE; helix-turn-helix 91.8 0.51 1.7E-05 28.4 5.7 25 93-117 24-48 (74)
146 3ctp_A Periplasmic binding pro 91.7 0.032 1.1E-06 43.3 0.0 43 96-138 3-48 (330)
147 1umq_A Photosynthetic apparatu 91.7 0.32 1.1E-05 31.3 4.9 34 84-117 43-76 (81)
148 1z4h_A TORI, TOR inhibition pr 91.7 0.064 2.2E-06 32.8 1.4 29 95-123 10-38 (66)
149 1jye_A Lactose operon represso 91.6 0.033 1.1E-06 43.7 0.0 43 96-138 4-49 (349)
150 2rn7_A IS629 ORFA; helix, all 91.6 0.14 4.9E-06 33.7 3.2 22 96-117 31-52 (108)
151 2jml_A DNA binding domain/tran 91.3 0.11 3.8E-06 32.9 2.3 24 94-117 4-27 (81)
152 1oyi_A Double-stranded RNA-bin 91.2 0.22 7.4E-06 32.4 3.6 34 83-116 18-51 (82)
153 1wiz_A DNA-binding protein SAT 91.2 0.41 1.4E-05 32.3 5.1 59 80-138 19-84 (101)
154 3c57_A Two component transcrip 91.1 0.37 1.3E-05 31.2 4.8 37 79-117 28-64 (95)
155 1je8_A Nitrate/nitrite respons 91.0 0.39 1.3E-05 30.3 4.7 43 93-135 34-80 (82)
156 2heo_A Z-DNA binding protein 1 90.9 0.41 1.4E-05 29.2 4.5 29 88-116 17-46 (67)
157 1s7o_A Hypothetical UPF0122 pr 90.7 0.44 1.5E-05 32.2 5.0 32 86-117 29-60 (113)
158 2d1h_A ST1889, 109AA long hypo 90.6 0.37 1.3E-05 30.8 4.5 32 85-116 25-57 (109)
159 3mky_B Protein SOPB; partition 90.5 0.48 1.6E-05 35.4 5.4 39 81-119 27-66 (189)
160 1ntc_A Protein (nitrogen regul 90.4 0.29 1E-05 31.7 3.7 33 84-116 53-85 (91)
161 1xn7_A Hypothetical protein YH 90.1 0.27 9.4E-06 31.3 3.3 34 83-116 4-37 (78)
162 2o4a_A DNA-binding protein SAT 90.0 0.44 1.5E-05 31.6 4.3 58 81-138 10-74 (93)
163 1sfx_A Conserved hypothetical 89.7 0.79 2.7E-05 29.1 5.5 33 84-116 23-55 (109)
164 1xsv_A Hypothetical UPF0122 pr 89.6 0.55 1.9E-05 31.6 4.8 33 85-117 31-63 (113)
165 2o3f_A Putative HTH-type trans 89.5 0.59 2E-05 31.4 4.8 31 93-123 37-67 (111)
166 3op9_A PLI0006 protein; struct 89.0 0.54 1.8E-05 30.9 4.3 25 30-54 24-48 (114)
167 3r0a_A Putative transcriptiona 88.9 0.56 1.9E-05 31.8 4.5 33 84-116 29-63 (123)
168 1r8d_A Transcription activator 88.8 0.43 1.5E-05 31.8 3.7 23 95-117 2-24 (109)
169 2d5v_A Hepatocyte nuclear fact 88.8 0.9 3.1E-05 32.4 5.7 39 80-118 6-45 (164)
170 1eto_A FIS, factor for inversi 88.5 0.82 2.8E-05 30.3 4.9 34 84-117 60-93 (98)
171 3mzy_A RNA polymerase sigma-H 88.5 0.88 3E-05 30.9 5.3 27 91-117 120-146 (164)
172 1g2h_A Transcriptional regulat 88.4 0.66 2.3E-05 27.7 4.0 33 84-117 23-55 (61)
173 3iwf_A Transcription regulator 88.0 0.54 1.9E-05 31.6 3.8 36 83-118 22-58 (107)
174 3kz3_A Repressor protein CI; f 87.9 0.37 1.3E-05 29.7 2.7 25 30-54 27-51 (80)
175 3t72_q RNA polymerase sigma fa 87.9 0.85 2.9E-05 30.2 4.7 24 94-117 38-61 (99)
176 3cuo_A Uncharacterized HTH-typ 87.9 0.4 1.4E-05 30.4 2.9 29 88-116 31-59 (99)
177 2pg4_A Uncharacterized protein 87.7 0.76 2.6E-05 29.3 4.3 29 87-115 21-51 (95)
178 3fmy_A HTH-type transcriptiona 87.7 0.31 1.1E-05 29.8 2.3 25 30-54 26-50 (73)
179 3gp4_A Transcriptional regulat 87.4 0.56 1.9E-05 33.0 3.7 26 95-120 2-28 (142)
180 3bpv_A Transcriptional regulat 87.3 1.1 3.9E-05 29.7 5.2 37 80-116 28-64 (138)
181 2cfx_A HTH-type transcriptiona 87.3 1.3 4.5E-05 30.5 5.6 32 85-116 9-40 (144)
182 2w25_A Probable transcriptiona 87.1 1.3 4.3E-05 30.7 5.5 32 85-116 11-42 (150)
183 3oop_A LIN2960 protein; protei 87.1 1 3.4E-05 30.3 4.8 38 79-116 35-72 (143)
184 2rnj_A Response regulator prot 87.0 0.7 2.4E-05 29.5 3.8 25 93-117 42-66 (91)
185 3nrv_A Putative transcriptiona 86.9 1.2 4.2E-05 30.0 5.2 38 79-116 38-75 (148)
186 3ech_A MEXR, multidrug resista 86.9 0.88 3E-05 30.7 4.4 37 80-116 36-72 (142)
187 3bdd_A Regulatory protein MARR 86.7 1.4 4.8E-05 29.3 5.4 34 83-116 33-66 (142)
188 3gp4_A Transcriptional regulat 86.7 2.6 9.1E-05 29.4 7.0 63 33-106 7-70 (142)
189 1ub9_A Hypothetical protein PH 86.7 0.58 2E-05 29.6 3.3 30 87-116 22-51 (100)
190 2nnn_A Probable transcriptiona 86.7 1.4 4.8E-05 29.2 5.4 38 79-116 36-73 (140)
191 1rp3_A RNA polymerase sigma fa 86.6 0.91 3.1E-05 32.9 4.7 32 86-117 194-225 (239)
192 2k02_A Ferrous iron transport 86.6 0.34 1.2E-05 31.7 2.0 34 83-116 4-37 (87)
193 2p5v_A Transcriptional regulat 86.6 1.6 5.3E-05 30.6 5.8 32 85-116 14-45 (162)
194 1on2_A Transcriptional regulat 86.5 1.5 5.2E-05 29.7 5.5 26 91-116 18-43 (142)
195 2cg4_A Regulatory protein ASNC 86.5 1.4 4.9E-05 30.4 5.5 32 85-116 12-43 (152)
196 3g3z_A NMB1585, transcriptiona 86.4 1.5 5E-05 29.6 5.4 38 79-116 29-66 (145)
197 2r0q_C Putative transposon TN5 86.4 1.6 5.6E-05 32.0 6.0 36 85-121 166-201 (209)
198 2dbb_A Putative HTH-type trans 86.3 1 3.5E-05 31.2 4.6 32 85-116 13-44 (151)
199 2p5k_A Arginine repressor; DNA 86.3 1.3 4.5E-05 25.8 4.5 27 91-117 15-46 (64)
200 1q06_A Transcriptional regulat 86.1 0.85 2.9E-05 31.6 4.1 22 96-117 1-22 (135)
201 1p4w_A RCSB; solution structur 86.1 1.7 5.7E-05 28.6 5.3 57 78-136 34-94 (99)
202 3hh0_A Transcriptional regulat 86.0 2.3 7.8E-05 29.9 6.4 64 33-107 9-73 (146)
203 3bro_A Transcriptional regulat 86.0 1.6 5.5E-05 29.0 5.4 36 81-116 34-71 (141)
204 1yse_A DNA-binding protein SAT 86.0 0.59 2E-05 33.3 3.2 60 78-137 21-87 (141)
205 1or7_A Sigma-24, RNA polymeras 85.9 1.1 3.8E-05 31.6 4.7 32 86-117 147-178 (194)
206 2hr3_A Probable transcriptiona 85.8 1.4 4.9E-05 29.6 5.1 34 83-116 37-71 (147)
207 3hh0_A Transcriptional regulat 85.7 0.89 3E-05 32.1 4.1 24 94-117 3-26 (146)
208 3omt_A Uncharacterized protein 85.7 0.43 1.5E-05 28.8 2.1 25 30-54 23-47 (73)
209 1ft9_A Carbon monoxide oxidati 85.7 1.6 5.6E-05 31.4 5.6 21 96-116 164-184 (222)
210 2rdp_A Putative transcriptiona 85.6 1.7 5.8E-05 29.3 5.4 36 81-116 42-77 (150)
211 1y0u_A Arsenical resistance op 85.5 1.9 6.4E-05 27.5 5.3 24 93-116 41-64 (96)
212 1r1u_A CZRA, repressor protein 85.5 1.3 4.4E-05 28.9 4.6 24 93-116 37-60 (106)
213 2pn6_A ST1022, 150AA long hypo 85.4 1.2 4E-05 30.7 4.6 31 86-116 8-38 (150)
214 1gdt_A GD resolvase, protein ( 85.4 1.5 5E-05 31.5 5.2 32 86-118 150-181 (183)
215 2xi8_A Putative transcription 85.4 0.48 1.7E-05 27.5 2.2 25 30-54 16-40 (66)
216 2oz6_A Virulence factor regula 85.4 0.64 2.2E-05 32.9 3.2 23 95-117 164-186 (207)
217 3lsg_A Two-component response 85.3 1.3 4.5E-05 28.5 4.5 26 94-119 18-43 (103)
218 2qvo_A Uncharacterized protein 85.3 0.86 2.9E-05 29.2 3.5 21 96-116 31-51 (95)
219 2fa5_A Transcriptional regulat 85.2 1.9 6.4E-05 29.5 5.5 33 84-116 52-84 (162)
220 1i1g_A Transcriptional regulat 85.2 1.4 4.7E-05 29.9 4.7 30 86-115 9-38 (141)
221 2a61_A Transcriptional regulat 85.2 1.9 6.5E-05 28.8 5.5 34 83-116 35-68 (145)
222 2ef8_A C.ECOT38IS, putative tr 85.1 2.1 7.3E-05 26.0 5.2 25 30-54 25-49 (84)
223 2r1j_L Repressor protein C2; p 85.0 0.52 1.8E-05 27.5 2.2 25 30-54 20-44 (68)
224 3ryp_A Catabolite gene activat 85.0 0.7 2.4E-05 32.8 3.3 23 95-117 167-189 (210)
225 3eco_A MEPR; mutlidrug efflux 85.0 1.1 3.9E-05 29.9 4.2 37 80-116 30-68 (139)
226 1u2w_A CADC repressor, cadmium 84.9 0.96 3.3E-05 30.5 3.8 30 87-116 48-77 (122)
227 2lkp_A Transcriptional regulat 84.9 1.6 5.4E-05 28.8 4.9 29 87-116 38-66 (119)
228 2cyy_A Putative HTH-type trans 84.9 2 6.9E-05 29.7 5.6 32 85-116 11-42 (151)
229 1r8d_A Transcription activator 84.8 3 0.0001 27.5 6.2 65 33-108 7-72 (109)
230 2wte_A CSA3; antiviral protein 84.7 1.6 5.6E-05 33.3 5.4 35 82-116 153-187 (244)
231 4hbl_A Transcriptional regulat 84.7 1.3 4.4E-05 30.2 4.5 37 80-116 40-76 (149)
232 2zcw_A TTHA1359, transcription 84.7 0.74 2.5E-05 32.8 3.3 22 96-117 147-168 (202)
233 2ia0_A Putative HTH-type trans 84.6 2 6.8E-05 30.7 5.6 32 85-116 21-52 (171)
234 2vz4_A Tipal, HTH-type transcr 84.6 3.7 0.00013 27.0 6.6 65 33-108 6-71 (108)
235 3s8q_A R-M controller protein; 84.5 0.54 1.9E-05 28.9 2.2 25 30-54 26-50 (82)
236 3tgn_A ADC operon repressor AD 84.4 1.9 6.6E-05 28.9 5.2 36 80-116 37-72 (146)
237 1ku9_A Hypothetical protein MJ 84.3 1.1 3.9E-05 29.9 4.0 36 81-116 26-62 (152)
238 2x4h_A Hypothetical protein SS 84.3 2.1 7.2E-05 28.8 5.4 24 93-116 29-52 (139)
239 1y7y_A C.AHDI; helix-turn-heli 84.2 0.6 2E-05 27.8 2.2 25 30-54 28-52 (74)
240 3k2z_A LEXA repressor; winged 84.2 1.5 5.2E-05 31.8 4.9 35 82-116 9-45 (196)
241 2fbi_A Probable transcriptiona 84.2 1.5 5E-05 29.2 4.5 34 83-116 38-71 (142)
242 2fmy_A COOA, carbon monoxide o 84.1 1.3 4.6E-05 31.7 4.5 23 94-116 166-188 (220)
243 2eth_A Transcriptional regulat 84.1 2 6.9E-05 29.3 5.3 34 83-116 46-79 (154)
244 1jgs_A Multiple antibiotic res 84.0 2.1 7.3E-05 28.3 5.3 34 83-116 36-69 (138)
245 1lmb_3 Protein (lambda repress 84.0 1.2 4E-05 27.9 3.7 25 30-54 32-56 (92)
246 3iwz_A CAP-like, catabolite ac 83.9 0.82 2.8E-05 32.9 3.3 22 96-117 188-209 (230)
247 2fbh_A Transcriptional regulat 83.8 1.3 4.3E-05 29.7 4.0 32 85-116 41-73 (146)
248 3dv8_A Transcriptional regulat 83.7 0.85 2.9E-05 32.6 3.3 23 95-117 169-191 (220)
249 2oqg_A Possible transcriptiona 83.7 1.4 4.8E-05 28.6 4.1 29 87-116 27-55 (114)
250 2pex_A Transcriptional regulat 83.7 1.7 5.8E-05 29.5 4.7 34 83-116 49-82 (153)
251 2b5a_A C.BCLI; helix-turn-heli 83.6 0.64 2.2E-05 28.0 2.2 25 30-54 25-49 (77)
252 1j5y_A Transcriptional regulat 83.6 1.7 6E-05 31.4 4.9 30 87-116 27-57 (187)
253 4dyq_A Gene 1 protein; GP1, oc 83.6 1 3.5E-05 31.4 3.5 37 81-118 15-52 (140)
254 2qww_A Transcriptional regulat 83.5 1.6 5.5E-05 29.6 4.5 33 84-116 44-76 (154)
255 3f6w_A XRE-family like protein 83.5 0.55 1.9E-05 28.9 1.9 25 30-54 29-53 (83)
256 3e97_A Transcriptional regulat 83.4 0.87 3E-05 32.9 3.3 24 94-117 174-197 (231)
257 1adr_A P22 C2 repressor; trans 83.4 0.66 2.2E-05 27.8 2.2 25 30-54 20-44 (76)
258 3s2w_A Transcriptional regulat 83.4 1.3 4.3E-05 30.5 4.0 31 86-116 55-85 (159)
259 3kp7_A Transcriptional regulat 83.4 1.2 4.1E-05 30.3 3.8 33 83-116 40-72 (151)
260 3k0l_A Repressor protein; heli 83.4 1.4 4.8E-05 30.5 4.2 37 80-116 45-81 (162)
261 2ofy_A Putative XRE-family tra 83.2 0.66 2.3E-05 28.8 2.2 24 30-53 29-52 (86)
262 2zkz_A Transcriptional repress 83.1 1.4 4.9E-05 28.4 3.9 29 89-117 35-63 (99)
263 3d0s_A Transcriptional regulat 83.1 0.9 3.1E-05 32.8 3.2 22 95-116 177-198 (227)
264 4ev0_A Transcription regulator 83.1 0.91 3.1E-05 32.3 3.2 40 95-134 163-215 (216)
265 2jt1_A PEFI protein; solution 83.1 1.8 6.2E-05 27.3 4.3 23 94-116 23-45 (77)
266 3bj6_A Transcriptional regulat 83.0 1.7 5.9E-05 29.3 4.5 34 83-116 42-75 (152)
267 2jrt_A Uncharacterized protein 82.9 3.1 0.00011 27.3 5.5 40 78-117 32-71 (95)
268 2e1c_A Putative HTH-type trans 82.8 2.6 8.9E-05 30.1 5.6 32 85-116 31-62 (171)
269 3hot_A Transposable element ma 82.8 8.9 0.0003 29.5 9.1 27 91-117 82-108 (345)
270 2k9q_A Uncharacterized protein 82.8 0.61 2.1E-05 28.4 1.9 25 30-54 17-41 (77)
271 3b02_A Transcriptional regulat 82.7 0.73 2.5E-05 32.7 2.5 23 95-117 139-161 (195)
272 2k9s_A Arabinose operon regula 82.5 3.4 0.00012 26.6 5.7 25 94-118 19-43 (107)
273 3o9x_A Uncharacterized HTH-typ 82.5 0.61 2.1E-05 31.7 2.0 26 30-55 86-111 (133)
274 2ewt_A BLDD, putative DNA-bind 82.4 0.65 2.2E-05 27.5 1.9 25 30-54 23-49 (71)
275 2obp_A Putative DNA-binding pr 82.4 3.4 0.00012 27.3 5.6 38 79-116 14-57 (96)
276 1z05_A Transcriptional regulat 82.4 2 6.9E-05 34.8 5.4 33 84-116 42-74 (429)
277 1lj9_A Transcriptional regulat 82.3 1.4 4.8E-05 29.5 3.8 32 85-116 33-64 (144)
278 2kpj_A SOS-response transcript 82.2 0.65 2.2E-05 29.5 1.9 25 30-54 24-48 (94)
279 3cjn_A Transcriptional regulat 82.2 1.9 6.4E-05 29.6 4.5 34 83-116 54-87 (162)
280 2gxg_A 146AA long hypothetical 82.2 2 6.8E-05 28.7 4.5 33 83-116 39-71 (146)
281 1z6r_A MLC protein; transcript 82.2 1.7 5.9E-05 34.8 4.9 33 84-116 19-51 (406)
282 1zyb_A Transcription regulator 82.0 1 3.6E-05 32.8 3.2 23 95-117 186-208 (232)
283 1s3j_A YUSO protein; structura 82.0 1.6 5.6E-05 29.6 4.1 33 84-116 40-72 (155)
284 2nyx_A Probable transcriptiona 81.9 2 6.8E-05 29.9 4.6 33 84-116 48-80 (168)
285 2h09_A Transcriptional regulat 81.9 3.2 0.00011 28.5 5.6 34 83-116 41-75 (155)
286 3la7_A Global nitrogen regulat 81.9 1.1 3.7E-05 33.0 3.3 24 94-117 192-215 (243)
287 3i4p_A Transcriptional regulat 81.8 1.9 6.4E-05 30.4 4.4 32 85-116 7-38 (162)
288 3kkc_A TETR family transcripti 81.8 1.4 4.7E-05 30.0 3.7 39 83-121 17-58 (177)
289 2hoe_A N-acetylglucosamine kin 81.8 1.4 4.9E-05 35.2 4.2 29 87-116 26-54 (380)
290 3bs3_A Putative DNA-binding pr 81.5 0.77 2.6E-05 27.5 2.0 25 30-54 25-49 (76)
291 1r69_A Repressor protein CI; g 81.4 1 3.6E-05 26.3 2.5 25 30-54 16-40 (69)
292 3dkw_A DNR protein; CRP-FNR, H 81.3 0.85 2.9E-05 32.8 2.5 24 94-117 177-200 (227)
293 2gau_A Transcriptional regulat 81.2 1.1 3.7E-05 32.5 3.1 24 94-117 179-202 (232)
294 2zhg_A Redox-sensitive transcr 81.2 1.5 5.1E-05 31.2 3.7 24 94-117 10-33 (154)
295 2kko_A Possible transcriptiona 81.1 1.5 5E-05 28.8 3.5 24 93-116 36-59 (108)
296 3e6c_C CPRK, cyclic nucleotide 81.1 1.2 4E-05 32.8 3.3 24 94-117 176-199 (250)
297 1zug_A Phage 434 CRO protein; 81.1 1 3.5E-05 26.5 2.4 25 30-54 18-42 (71)
298 3oou_A LIN2118 protein; protei 81.1 2.9 0.0001 27.0 4.9 26 94-119 20-45 (108)
299 3qq6_A HTH-type transcriptiona 80.9 0.79 2.7E-05 28.3 1.9 25 30-54 25-50 (78)
300 3g7d_A PHPD; non heme Fe(II) d 80.9 2.1 7.3E-05 34.9 4.8 54 86-139 7-61 (443)
301 3e6m_A MARR family transcripti 80.9 1.8 6E-05 29.9 4.0 33 84-116 56-88 (161)
302 1b4a_A Arginine repressor; hel 80.9 2.4 8.1E-05 30.2 4.7 33 85-117 8-46 (149)
303 3mn2_A Probable ARAC family tr 80.9 3.6 0.00012 26.6 5.3 26 94-119 17-42 (108)
304 3gpv_A Transcriptional regulat 80.9 1.5 5.3E-05 30.8 3.7 24 94-117 15-38 (148)
305 4fx0_A Probable transcriptiona 80.8 2.1 7.1E-05 29.5 4.3 22 95-116 52-73 (148)
306 2ppx_A AGR_C_3184P, uncharacte 80.8 1 3.6E-05 28.9 2.6 25 30-54 45-69 (99)
307 3fx3_A Cyclic nucleotide-bindi 80.8 0.92 3.2E-05 32.9 2.5 24 94-117 177-200 (237)
308 4ghj_A Probable transcriptiona 80.6 0.89 3.1E-05 30.1 2.2 39 16-54 37-75 (101)
309 3qkx_A Uncharacterized HTH-typ 80.6 2.2 7.4E-05 29.1 4.3 37 83-119 13-52 (188)
310 3b7h_A Prophage LP1 protein 11 80.5 0.83 2.8E-05 27.5 1.9 24 30-53 22-45 (78)
311 3dcf_A Transcriptional regulat 80.5 2.1 7.1E-05 29.9 4.3 39 82-120 35-76 (218)
312 3kcc_A Catabolite gene activat 80.3 1.3 4.4E-05 33.1 3.3 23 95-117 217-239 (260)
313 3fm5_A Transcriptional regulat 80.3 2.5 8.5E-05 28.6 4.5 33 84-116 42-75 (150)
314 2frh_A SARA, staphylococcal ac 80.2 1.3 4.4E-05 29.7 3.0 34 83-116 39-74 (127)
315 3cdh_A Transcriptional regulat 80.2 1.9 6.5E-05 29.3 3.9 33 84-116 46-78 (155)
316 2l49_A C protein; P2 bacteriop 80.1 1.2 4.2E-05 28.2 2.7 25 30-54 19-43 (99)
317 3jw4_A Transcriptional regulat 80.0 1.5 5E-05 29.7 3.3 36 81-116 41-78 (148)
318 3uj3_X DNA-invertase; helix-tu 80.0 0.35 1.2E-05 35.1 0.0 35 85-120 149-183 (193)
319 3g5g_A Regulatory protein; tra 80.0 0.98 3.4E-05 29.4 2.2 25 30-54 43-67 (99)
320 1ojl_A Transcriptional regulat 79.9 2.3 7.9E-05 33.0 4.7 33 84-116 270-302 (304)
321 1q1h_A TFE, transcription fact 79.7 2.1 7.1E-05 27.9 3.8 22 95-116 33-54 (110)
322 3hsr_A HTH-type transcriptiona 79.5 1.1 3.6E-05 30.3 2.4 34 83-116 38-71 (140)
323 2f07_A YVDT; helix-turn-helix, 79.5 2.2 7.7E-05 29.9 4.2 29 94-122 29-57 (197)
324 3bd1_A CRO protein; transcript 79.4 1 3.4E-05 27.6 2.0 25 30-54 13-37 (79)
325 3deu_A Transcriptional regulat 79.2 2.7 9.4E-05 29.3 4.6 36 81-116 53-89 (166)
326 2wiu_B HTH-type transcriptiona 79.2 0.75 2.6E-05 28.5 1.4 25 30-54 27-51 (88)
327 4aik_A Transcriptional regulat 79.1 3.2 0.00011 28.6 4.9 32 85-116 35-67 (151)
328 1z91_A Organic hydroperoxide r 78.9 1.8 6.1E-05 29.1 3.4 36 81-116 40-75 (147)
329 2ict_A Antitoxin HIGA; helix-t 78.8 2.6 9E-05 26.4 4.0 25 30-54 23-47 (94)
330 3ppb_A Putative TETR family tr 78.7 2.7 9.2E-05 28.7 4.3 38 83-120 14-54 (195)
331 3qao_A LMO0526 protein, MERR-l 78.7 1.9 6.5E-05 33.0 3.8 24 94-117 2-25 (249)
332 3nqo_A MARR-family transcripti 78.6 3.5 0.00012 29.4 5.1 38 79-116 39-78 (189)
333 3vk0_A NHTF, transcriptional r 78.5 1 3.4E-05 29.8 1.9 26 29-54 35-60 (114)
334 1sfu_A 34L protein; protein/Z- 78.4 1.2 4.1E-05 28.3 2.2 30 87-116 21-50 (75)
335 2hsg_A Glucose-resistance amyl 78.4 2.2 7.5E-05 32.6 4.1 21 32-52 6-26 (332)
336 1xmk_A Double-stranded RNA-spe 78.4 1.7 5.9E-05 27.7 2.9 31 85-115 15-46 (79)
337 3jth_A Transcription activator 78.3 1.4 4.7E-05 28.1 2.5 24 93-116 34-57 (98)
338 3dew_A Transcriptional regulat 78.2 3.6 0.00012 28.2 4.9 37 83-119 13-52 (206)
339 3vp5_A Transcriptional regulat 78.2 2.7 9.1E-05 29.4 4.3 37 83-119 17-56 (189)
340 2dg7_A Putative transcriptiona 78.1 5 0.00017 27.7 5.7 38 83-120 12-52 (195)
341 3oio_A Transcriptional regulat 78.1 7.1 0.00024 25.3 6.1 26 94-119 22-47 (113)
342 3f3x_A Transcriptional regulat 77.9 3.1 0.00011 27.8 4.4 33 83-116 39-71 (144)
343 1neq_A DNA-binding protein NER 77.7 0.57 1.9E-05 29.3 0.5 43 5-51 3-45 (74)
344 3on4_A Transcriptional regulat 77.5 0.98 3.4E-05 31.0 1.7 26 94-119 29-54 (191)
345 3egq_A TETR family transcripti 77.4 0.98 3.3E-05 30.7 1.7 38 83-120 9-49 (170)
346 3bja_A Transcriptional regulat 77.4 1.3 4.3E-05 29.4 2.2 36 81-116 33-68 (139)
347 2oa4_A SIR5; structure, struct 77.4 3 0.0001 27.9 4.0 30 88-117 43-72 (101)
348 1u8b_A ADA polyprotein; protei 77.3 5 0.00017 27.0 5.3 33 93-125 91-123 (133)
349 1x57_A Endothelial differentia 77.3 1 3.5E-05 28.3 1.6 25 30-54 28-52 (91)
350 2fxa_A Protease production reg 77.3 2.9 0.0001 30.5 4.4 36 81-116 48-83 (207)
351 3f52_A CLP gene regulator (CLG 77.1 1.2 4.2E-05 29.3 2.1 25 30-54 43-67 (117)
352 2zhg_A Redox-sensitive transcr 77.1 6.6 0.00023 27.7 6.1 64 32-107 15-79 (154)
353 2rae_A Transcriptional regulat 76.9 1.6 5.5E-05 30.5 2.8 29 94-122 36-64 (207)
354 2fq4_A Transcriptional regulat 76.9 2.2 7.6E-05 29.7 3.5 26 94-119 31-56 (192)
355 2jvl_A TRMBF1; coactivator, he 76.9 1.5 5E-05 28.9 2.4 25 30-54 51-75 (107)
356 3lhq_A Acrab operon repressor 76.7 1.2 4.1E-05 31.1 2.0 27 94-120 33-59 (220)
357 2zcm_A Biofilm operon icaabcd 76.7 2.6 8.8E-05 29.1 3.8 27 94-120 26-52 (192)
358 3tqn_A Transcriptional regulat 76.6 6.8 0.00023 25.8 5.7 35 81-115 12-53 (113)
359 2v57_A TETR family transcripti 76.6 1.3 4.4E-05 30.5 2.2 27 94-120 31-57 (190)
360 3bqz_B HTH-type transcriptiona 76.6 2.6 9E-05 28.9 3.8 27 94-120 21-47 (194)
361 3lfp_A CSP231I C protein; tran 76.5 1.3 4.3E-05 28.4 1.9 25 30-54 16-44 (98)
362 2d6y_A Putative TETR family re 76.5 3.1 0.00011 29.3 4.3 27 94-120 27-53 (202)
363 3f1b_A TETR-like transcription 76.4 1.1 3.9E-05 31.0 1.8 27 94-120 33-59 (203)
364 3vpr_A Transcriptional regulat 76.4 3.2 0.00011 28.7 4.2 27 94-120 22-48 (190)
365 3dn7_A Cyclic nucleotide bindi 76.2 0.53 1.8E-05 33.2 0.0 24 94-117 167-190 (194)
366 3knw_A Putative transcriptiona 76.2 1.3 4.3E-05 31.0 2.0 27 94-120 33-59 (212)
367 1tbx_A ORF F-93, hypothetical 76.2 1.8 6.3E-05 27.5 2.7 31 86-116 13-47 (99)
368 2lfw_A PHYR sigma-like domain; 76.2 1.3 4.5E-05 30.8 2.1 30 87-116 101-130 (157)
369 3mkl_A HTH-type transcriptiona 76.1 5 0.00017 26.5 5.0 25 95-119 23-47 (120)
370 3ljl_A Transcriptional regulat 76.1 1.7 5.7E-05 29.6 2.6 36 85-120 21-59 (156)
371 1qpz_A PURA, protein (purine n 76.1 2.4 8.2E-05 32.6 3.8 20 33-52 5-24 (340)
372 3ivp_A Putative transposon-rel 76.0 1.2 4E-05 29.8 1.7 26 29-54 26-51 (126)
373 1q06_A Transcriptional regulat 76.0 7.3 0.00025 26.7 5.9 63 33-106 5-68 (135)
374 2kfs_A Conserved hypothetical 76.0 1.9 6.6E-05 30.9 2.9 29 94-122 30-58 (148)
375 1r1t_A Transcriptional repress 75.9 3.6 0.00012 27.7 4.2 24 93-116 57-80 (122)
376 3dpj_A Transcription regulator 75.8 1.3 4.5E-05 30.6 2.0 26 94-119 27-52 (194)
377 2a6c_A Helix-turn-helix motif; 75.8 1.4 4.7E-05 27.4 1.9 24 30-53 33-56 (83)
378 2jj7_A Hemolysin II regulatory 75.5 1.6 5.4E-05 30.1 2.4 26 94-119 26-51 (186)
379 3anp_C Transcriptional repress 75.5 1.9 6.4E-05 30.3 2.8 27 94-120 28-54 (204)
380 2g7s_A Transcriptional regulat 75.4 1.2 4.2E-05 30.5 1.7 26 94-119 27-52 (194)
381 4aci_A HTH-type transcriptiona 75.4 1.3 4.4E-05 30.6 1.9 27 94-120 33-59 (191)
382 3trb_A Virulence-associated pr 75.3 3 0.0001 27.4 3.6 25 30-54 29-53 (104)
383 2qtq_A Transcriptional regulat 75.2 3.5 0.00012 28.6 4.2 27 94-120 35-61 (213)
384 2yve_A Transcriptional regulat 75.1 4.3 0.00015 28.1 4.6 37 83-119 9-48 (185)
385 3q0w_A HTH-type transcriptiona 75.1 3.1 0.0001 30.0 3.9 38 83-120 49-89 (236)
386 3clo_A Transcriptional regulat 75.0 4.1 0.00014 30.6 4.8 56 78-135 197-256 (258)
387 3lwj_A Putative TETR-family tr 75.0 2.7 9.3E-05 29.1 3.5 26 94-119 31-56 (202)
388 3kz9_A SMCR; transcriptional r 74.9 1.4 4.8E-05 30.5 2.0 37 83-119 22-61 (206)
389 3h5t_A Transcriptional regulat 74.9 3.1 0.00011 32.3 4.2 52 30-105 11-63 (366)
390 3gpv_A Transcriptional regulat 74.7 8.5 0.00029 26.8 6.1 64 32-106 20-84 (148)
391 2qib_A TETR-family transcripti 74.7 3.1 0.00011 30.0 3.9 38 83-120 18-58 (231)
392 1uly_A Hypothetical protein PH 74.7 3.1 0.00011 30.5 3.9 29 87-116 26-54 (192)
393 3gzi_A Transcriptional regulat 74.5 1.5 5E-05 30.9 2.0 38 83-120 22-62 (218)
394 3bru_A Regulatory protein, TET 74.3 1.6 5.4E-05 30.8 2.2 38 83-120 35-75 (222)
395 1r8e_A Multidrug-efflux transp 74.3 16 0.00054 27.3 8.0 65 33-108 10-76 (278)
396 3mlf_A Transcriptional regulat 74.3 1.4 4.6E-05 29.3 1.7 25 30-54 38-62 (111)
397 4b8x_A SCO5413, possible MARR- 74.2 2.6 9E-05 28.9 3.2 22 95-116 51-72 (147)
398 2eby_A Putative HTH-type trans 74.1 0.45 1.5E-05 31.3 -0.8 25 30-54 26-50 (113)
399 2dg6_A Putative transcriptiona 74.0 6.8 0.00023 29.5 5.7 64 33-106 5-69 (222)
400 2jsc_A Transcriptional regulat 74.0 3.6 0.00012 27.4 3.8 24 93-116 32-55 (118)
401 3frq_A Repressor protein MPHR( 73.9 1.5 5E-05 30.5 1.9 27 94-120 27-53 (195)
402 3c2b_A Transcriptional regulat 73.8 2.2 7.5E-05 30.1 2.8 27 94-120 34-60 (221)
403 2hku_A A putative transcriptio 73.8 3.6 0.00012 29.0 4.0 34 86-120 31-64 (215)
404 2o0m_A Transcriptional regulat 73.8 0.67 2.3E-05 36.9 0.0 34 84-117 23-56 (345)
405 3rqi_A Response regulator prot 73.7 6.2 0.00021 27.4 5.2 36 84-119 145-180 (184)
406 3neu_A LIN1836 protein; struct 73.7 7.3 0.00025 26.2 5.4 36 80-115 15-57 (125)
407 2bv6_A MGRA, HTH-type transcri 73.6 1.9 6.4E-05 28.8 2.3 34 83-116 39-72 (142)
408 1b0n_A Protein (SINR protein); 73.5 1.7 5.7E-05 28.0 1.9 25 30-54 16-41 (111)
409 1l9z_H Sigma factor SIGA; heli 73.5 4 0.00014 33.9 4.7 24 94-117 394-417 (438)
410 1okr_A MECI, methicillin resis 73.5 4.1 0.00014 26.6 4.0 32 85-116 14-49 (123)
411 3mnl_A KSTR, transcriptional r 73.3 1.2 4.2E-05 30.9 1.3 27 94-120 39-65 (203)
412 3pas_A TETR family transcripti 73.3 1.2 4.2E-05 30.5 1.3 26 94-119 27-52 (195)
413 3o60_A LIN0861 protein; PSI, M 73.2 2.4 8.1E-05 30.0 2.9 39 82-120 23-65 (185)
414 3f0c_A TETR-molecule A, transc 73.0 1.7 5.8E-05 30.5 2.0 27 94-120 30-56 (216)
415 3rh2_A Hypothetical TETR-like 72.9 1.5 5.1E-05 30.9 1.7 27 94-120 22-48 (212)
416 3loc_A HTH-type transcriptiona 72.9 1.3 4.4E-05 30.9 1.3 28 92-119 35-62 (212)
417 3qao_A LMO0526 protein, MERR-l 72.9 9 0.00031 29.2 6.3 64 33-107 8-72 (249)
418 3pqk_A Biofilm growth-associat 72.9 5 0.00017 25.6 4.2 25 92-116 33-57 (102)
419 2q0o_A Probable transcriptiona 72.9 5.4 0.00018 29.5 4.9 43 93-135 188-234 (236)
420 2bgc_A PRFA; bacterial infecti 72.8 1.9 6.5E-05 31.5 2.3 39 95-133 169-221 (238)
421 3bni_A Putative TETR-family tr 72.6 3.3 0.00011 29.8 3.6 27 94-120 62-88 (229)
422 3cwr_A Transcriptional regulat 72.6 1.5 5E-05 30.4 1.6 26 94-119 36-61 (208)
423 3bhq_A Transcriptional regulat 72.5 2.3 8E-05 30.0 2.7 27 94-120 31-57 (211)
424 3cjd_A Transcriptional regulat 72.4 2.7 9.1E-05 29.6 3.0 28 93-120 30-57 (198)
425 2cob_A LCOR protein; MLR2, KIA 72.4 7 0.00024 24.4 4.5 38 81-119 17-54 (70)
426 2ek5_A Predicted transcription 72.4 7.4 0.00025 26.5 5.2 34 82-115 8-48 (129)
427 3e7q_A Transcriptional regulat 72.2 1.4 4.6E-05 30.8 1.3 27 94-120 33-59 (215)
428 3qbm_A TETR transcriptional re 72.2 2.2 7.5E-05 29.4 2.4 26 94-119 26-51 (199)
429 2fu4_A Ferric uptake regulatio 72.2 4.6 0.00016 24.8 3.8 23 94-116 32-59 (83)
430 2dg8_A Putative TETR-family tr 72.0 1.3 4.4E-05 30.9 1.2 38 83-120 14-54 (193)
431 4a0z_A Transcription factor FA 72.0 5.2 0.00018 29.3 4.6 37 87-123 18-54 (190)
432 2wui_A MEXZ, transcriptional r 72.0 2.4 8.3E-05 30.0 2.7 26 94-119 30-55 (210)
433 1pb6_A Hypothetical transcript 72.0 3.4 0.00011 28.7 3.4 27 94-120 37-63 (212)
434 3vib_A MTRR; helix-turn-helix 71.9 1.9 6.6E-05 30.4 2.1 27 94-120 29-55 (210)
435 1v4r_A Transcriptional repress 71.9 4.4 0.00015 26.1 3.7 20 97-116 37-56 (102)
436 3by6_A Predicted transcription 71.8 8.5 0.00029 26.0 5.4 35 81-115 14-55 (126)
437 1l0o_C Sigma factor; bergerat 71.5 0.81 2.8E-05 33.2 0.0 30 88-117 207-236 (243)
438 2oer_A Probable transcriptiona 71.5 1.9 6.6E-05 30.6 2.1 27 94-120 43-69 (214)
439 2eh3_A Transcriptional regulat 71.5 4.6 0.00016 27.6 4.0 26 94-119 21-46 (179)
440 3mvp_A TETR/ACRR transcription 71.5 1.7 5.7E-05 30.4 1.7 27 94-120 45-71 (217)
441 2guh_A Putative TETR-family tr 71.4 7.6 0.00026 27.7 5.3 37 83-119 44-83 (214)
442 3szt_A QCSR, quorum-sensing co 71.4 3.4 0.00012 30.8 3.5 43 93-135 188-234 (237)
443 2zb9_A Putative transcriptiona 71.4 1.7 5.9E-05 30.6 1.7 27 94-120 42-68 (214)
444 2qwt_A Transcriptional regulat 71.4 1.8 6E-05 30.4 1.8 25 95-119 32-56 (196)
445 1mkm_A ICLR transcriptional re 71.1 4.9 0.00017 30.1 4.4 22 95-116 23-44 (249)
446 1z7u_A Hypothetical protein EF 71.0 6 0.00021 25.9 4.3 24 93-116 33-57 (112)
447 3b81_A Transcriptional regulat 70.9 1.4 4.7E-05 30.6 1.1 26 94-119 30-55 (203)
448 1u3e_M HNH homing endonuclease 70.9 3.7 0.00013 29.4 3.4 26 96-121 136-161 (174)
449 1zk8_A Transcriptional regulat 70.8 2.5 8.4E-05 28.9 2.4 37 83-119 13-52 (183)
450 1l3l_A Transcriptional activat 70.7 6.4 0.00022 29.0 4.9 55 79-135 174-232 (234)
451 1o5l_A Transcriptional regulat 70.7 0.87 3E-05 32.8 0.0 24 94-117 163-186 (213)
452 2o7t_A Transcriptional regulat 70.7 1.8 6.2E-05 30.2 1.7 33 87-119 17-52 (199)
453 3cec_A Putative antidote prote 70.7 2.1 7.2E-05 27.5 1.9 25 30-54 33-57 (104)
454 2hzt_A Putative HTH-type trans 70.7 4.6 0.00016 26.2 3.7 24 93-116 25-49 (107)
455 2g3b_A Putative TETR-family tr 70.6 1.9 6.4E-05 30.7 1.8 27 94-120 22-48 (208)
456 2f2e_A PA1607; transcription f 70.3 6.1 0.00021 27.3 4.4 29 87-116 30-58 (146)
457 3nxc_A HTH-type protein SLMA; 70.3 1.2 4.1E-05 31.2 0.7 26 94-119 44-69 (212)
458 3bjb_A Probable transcriptiona 70.2 2.4 8.1E-05 30.1 2.3 37 83-119 27-66 (207)
459 2i10_A Putative TETR transcrip 70.1 7.1 0.00024 27.3 4.8 33 87-119 23-55 (202)
460 3t76_A VANU, transcriptional r 70.1 2.6 8.7E-05 27.0 2.2 24 30-53 39-62 (88)
461 2rek_A Putative TETR-family tr 70.0 4.3 0.00015 28.1 3.6 25 95-119 35-59 (199)
462 2id3_A Putative transcriptiona 70.0 4.9 0.00017 28.7 4.0 27 94-120 59-85 (225)
463 2gen_A Probable transcriptiona 69.9 2.6 8.8E-05 29.6 2.4 27 94-120 26-52 (197)
464 1vi0_A Transcriptional regulat 69.9 1.9 6.4E-05 30.6 1.7 26 94-119 27-52 (206)
465 1iuf_A Centromere ABP1 protein 69.8 1.2 4E-05 31.1 0.5 26 92-117 27-58 (144)
466 3nnr_A Transcriptional regulat 69.8 1.9 6.6E-05 30.8 1.7 27 94-120 24-50 (228)
467 2iai_A Putative transcriptiona 69.7 3.6 0.00012 29.5 3.2 29 91-119 46-74 (230)
468 2nx4_A Transcriptional regulat 69.6 3.7 0.00013 28.6 3.2 26 94-119 29-54 (194)
469 3v6g_A Probable transcriptiona 69.6 2.2 7.5E-05 30.6 2.0 28 92-119 31-58 (208)
470 3boq_A Transcriptional regulat 69.6 1.8 6.1E-05 29.6 1.5 34 83-116 49-83 (160)
471 2np5_A Transcriptional regulat 69.5 2 6.8E-05 30.3 1.7 27 94-120 28-54 (203)
472 3col_A Putative transcription 69.4 2.5 8.5E-05 28.9 2.2 26 94-119 29-54 (196)
473 2wus_R RODZ, putative uncharac 69.2 20 0.00069 23.7 6.7 26 29-54 21-46 (112)
474 1p6r_A Penicillinase repressor 68.8 6.3 0.00022 24.1 3.9 33 84-116 12-48 (82)
475 2opt_A Actii protein; helical 68.5 8.7 0.0003 28.3 5.2 27 94-120 25-51 (234)
476 1s4k_A Putative cytoplasmic pr 68.4 5.2 0.00018 27.6 3.6 24 31-54 19-44 (120)
477 3rd3_A Probable transcriptiona 68.4 1.3 4.5E-05 30.5 0.5 26 94-119 29-54 (197)
478 1z0x_A Transcriptional regulat 68.3 4.9 0.00017 29.0 3.7 37 83-119 10-50 (220)
479 3plo_X DNA-invertase; resolvas 68.3 1.1 3.6E-05 32.6 0.0 31 87-118 151-181 (193)
480 2ibd_A Possible transcriptiona 68.2 4.3 0.00015 28.4 3.3 27 94-120 33-59 (204)
481 3g1o_A Transcriptional regulat 68.1 4.7 0.00016 29.4 3.6 38 83-120 48-88 (255)
482 1fx7_A Iron-dependent represso 68.1 7.3 0.00025 28.8 4.7 33 83-116 11-45 (230)
483 3g7r_A Putative transcriptiona 68.1 4.4 0.00015 28.8 3.4 27 94-120 54-80 (221)
484 3bqy_A Putative TETR family tr 68.0 2.7 9.3E-05 30.4 2.2 26 94-119 21-46 (209)
485 3b73_A PHIH1 repressor-like pr 67.8 7.2 0.00025 26.2 4.2 33 84-116 16-50 (111)
486 3hrs_A Metalloregulator SCAR; 67.7 4.5 0.00015 29.8 3.4 24 93-116 18-41 (214)
487 2q24_A Putative TETR family tr 67.7 2.3 8E-05 29.5 1.8 24 96-119 35-58 (194)
488 2pz9_A Putative regulatory pro 67.6 1.8 6E-05 31.1 1.1 27 94-120 49-75 (226)
489 2yu3_A DNA-directed RNA polyme 67.6 12 0.00042 24.5 5.2 30 87-116 43-74 (95)
490 2gfn_A HTH-type transcriptiona 67.5 2.4 8.3E-05 30.1 1.8 27 94-120 28-54 (209)
491 3qwg_A ESX-1 secretion-associa 67.5 4.8 0.00016 27.4 3.3 22 32-53 28-54 (123)
492 3cta_A Riboflavin kinase; stru 67.5 3.6 0.00012 30.5 2.9 22 95-116 27-48 (230)
493 1bl0_A Protein (multiple antib 67.3 9.5 0.00033 25.4 4.8 24 95-118 27-50 (129)
494 1t33_A Putative transcriptiona 67.3 3.8 0.00013 28.8 2.9 25 96-120 32-56 (224)
495 3rkx_A Biotin-[acetyl-COA-carb 67.2 7 0.00024 30.9 4.6 31 86-116 8-40 (323)
496 2hyt_A TETR-family transcripti 67.2 4.2 0.00014 28.4 3.0 27 94-120 31-57 (197)
497 2xpw_A Tetracycline repressor 67.2 2.6 8.8E-05 30.5 1.9 27 94-120 22-48 (207)
498 3f6o_A Probable transcriptiona 67.0 3.4 0.00012 27.3 2.4 24 93-116 29-52 (118)
499 1r8e_A Multidrug-efflux transp 67.0 3.4 0.00012 31.2 2.7 27 94-120 4-31 (278)
500 3u2r_A Regulatory protein MARR 66.9 3.5 0.00012 28.5 2.6 34 83-116 48-83 (168)
No 1
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=99.70 E-value=6.8e-17 Score=111.43 Aligned_cols=84 Identities=37% Similarity=0.573 Sum_probs=79.2
Q ss_pred CCCCcccccchhhhccccCCcchHHHHHHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Q 032366 58 SSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARN--DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALG 135 (142)
Q Consensus 58 ~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~--~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lg 135 (142)
.+...+..+++++++.+.+..+.+.++.+|+.+|. .+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++||
T Consensus 10 ~~~~~~~~~~d~~~~~~~~~~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~ 89 (107)
T 2jvl_A 10 GTEGQRLTKVDRSDDIIKPKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLN 89 (107)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTT
T ss_pred CCcccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 34568889999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 032366 136 VKLRGK 141 (142)
Q Consensus 136 vsl~e~ 141 (142)
|++++.
T Consensus 90 v~~~e~ 95 (107)
T 2jvl_A 90 VKLRGA 95 (107)
T ss_dssp CBSSSS
T ss_pred cCHhhh
Confidence 999874
No 2
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=99.59 E-value=3.7e-15 Score=94.09 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhC--CCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLIN--EKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lg--is~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
....++.+|+.+|..+|+||.+||+.+| +|+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 5 ~~~~~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~~ 68 (71)
T 2ewt_A 5 YAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQE 68 (71)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3456999999999999999999999999 9999999999999999999999999999999864
No 3
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=99.59 E-value=5.5e-15 Score=98.13 Aligned_cols=65 Identities=63% Similarity=0.905 Sum_probs=60.8
Q ss_pred CCcchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 76 HDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 76 ~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
.+.+.+.++.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 7 ~~~~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~ 71 (91)
T 1x57_A 7 GDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRG 71 (91)
T ss_dssp SSCCCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 34556679999999999999999999999999999999999999999999999999999999976
No 4
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=99.57 E-value=5.7e-15 Score=96.03 Aligned_cols=61 Identities=23% Similarity=0.145 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
+...++.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 8 ~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~ 68 (82)
T 3s8q_A 8 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDV 68 (82)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 4567999999999999999999999999999999999999999999999999999999874
No 5
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=99.57 E-value=4e-15 Score=96.79 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=57.0
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESG-KAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G-~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
....|+.+|+.+|+++||||.+||+.+|||+++|++||+| +..|+.+.+.+||++|||+++
T Consensus 7 ~~~~~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 7 HHHMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp -CTTHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHH
T ss_pred CCCCccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHH
Confidence 3456999999999999999999999999999999999999 889999999999999999864
No 6
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=99.57 E-value=9.6e-15 Score=92.58 Aligned_cols=62 Identities=23% Similarity=0.207 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
....++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 10 ~~~~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~ 71 (74)
T 1y7y_A 10 DLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRE 71 (74)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 34679999999999999999999999999999999999999999999999999999999863
No 7
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=99.57 E-value=6.9e-15 Score=95.58 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
.+.++.+|+.+|+++|+||.+||+.+|||+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 10 ~~~l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~ 70 (80)
T 3kz3_A 10 ARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEE 70 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHH
Confidence 4568999999999999999999999999999999999999999999999999999999864
No 8
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=99.55 E-value=7.3e-15 Score=100.01 Aligned_cols=61 Identities=23% Similarity=0.145 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
+...++.+|+.+|+++||||.+||+.+||++++|++||+|+..|+.+.+.+||++|||+++
T Consensus 25 ~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~ 85 (99)
T 3g5g_A 25 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDV 85 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 4567999999999999999999999999999999999999999999999999999999875
No 9
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=99.55 E-value=9.3e-15 Score=95.09 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+.++.+|+.+|.++||||.+||+.+|+++++|++||+|+..|+.+.+.+||++|||+++
T Consensus 12 ~~~~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~ 71 (83)
T 3f6w_A 12 YQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPY 71 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHH
Confidence 456899999999999999999999999999999999999999999999999999999874
No 10
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=99.55 E-value=1.2e-14 Score=93.16 Aligned_cols=60 Identities=15% Similarity=0.279 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 139 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~ 139 (142)
...++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+. .|+.+.+.+||++|||+++
T Consensus 5 ~~~~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~ 65 (78)
T 3b7h_A 5 GEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVH 65 (78)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHH
Confidence 45799999999999999999999999999999999999999 9999999999999999874
No 11
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=4.1e-15 Score=95.91 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.++.+|+.+|..+||||.+||+++|||+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 2 ~~~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~ 59 (77)
T 2k9q_A 2 ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLN 59 (77)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHH
Confidence 4789999999999999999999999999999999999999999999999999999874
No 12
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=99.54 E-value=1.5e-14 Score=92.41 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
....++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 7 ~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~~~ 67 (77)
T 2b5a_A 7 IKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPAS 67 (77)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH
Confidence 4567999999999999999999999999999999999999999999999999999999874
No 13
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=99.54 E-value=3.3e-15 Score=95.28 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
++++|+.+|.++|+||.+||+.+|||+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 9 ~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~ 66 (73)
T 3omt_A 9 IFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRE 66 (73)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 5678999999999999999999999999999999999999999999999999999863
No 14
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=99.53 E-value=2.6e-14 Score=93.71 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 139 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~ 139 (142)
.....++.+|+.+|.++||||.+||+.+|+|+++|++||+|+. .|+.+.+.+||++|||+++
T Consensus 14 ~~~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~~~ 76 (83)
T 2a6c_A 14 KMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCC
T ss_pred cccHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCeE
Confidence 4556799999999999999999999999999999999999998 5999999999999999986
No 15
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=99.53 E-value=1.5e-14 Score=90.18 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 5 ~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~ 62 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPD 62 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 4899999999999999999999999999999999999999999999999999999874
No 16
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=99.53 E-value=2.7e-14 Score=95.49 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=58.0
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
..+.++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 6 ~~~~~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~ 66 (94)
T 2kpj_A 6 QKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKS 66 (94)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHH
Confidence 3567999999999999999999999999999999999999999999999999999999975
No 17
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=99.53 E-value=2.9e-14 Score=94.18 Aligned_cols=58 Identities=22% Similarity=0.142 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 138 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl 138 (142)
..|+.+|+.+|+.+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+.
T Consensus 13 ~~~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~ 70 (86)
T 3eus_A 13 VYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLD 70 (86)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCc
Confidence 4589999999999999999999999999999999999999999999999999999953
No 18
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=99.52 E-value=3.5e-14 Score=99.58 Aligned_cols=60 Identities=28% Similarity=0.372 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+.||.+|+.+|..+||||.+||+.+|||+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 10 ~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~ 69 (126)
T 3ivp_A 10 FRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVD 69 (126)
T ss_dssp THHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 457999999999999999999999999999999999999999999999999999999985
No 19
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=99.52 E-value=2.4e-14 Score=99.13 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+...++.+|+.+|+.+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~ 78 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAY 78 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 45667999999999999999999999999999999999999999999999999999999874
No 20
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=99.52 E-value=2.4e-14 Score=91.13 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 5 ~~~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~ 62 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPD 62 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 4899999999999999999999999999999999999999999999999999999874
No 21
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=99.52 E-value=3.6e-14 Score=95.09 Aligned_cols=57 Identities=7% Similarity=0.124 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
...+|+++|+++||||.+||+++|||+++|++||+|+. |+.+.+.+||++|||++++
T Consensus 25 ~~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~-~s~~~l~kIa~~L~v~~~~ 81 (88)
T 3t76_A 25 SYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNEN-VSLTVLLAICEYLNCDFGD 81 (88)
T ss_dssp ECHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCC-CCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC-cCHHHHHHHHHHHCcCHHH
Confidence 45789999999999999999999999999999999986 8999999999999999864
No 22
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=99.51 E-value=2.3e-14 Score=93.88 Aligned_cols=61 Identities=25% Similarity=0.349 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
....++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 9 ~~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~ 69 (88)
T 2wiu_B 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMT 69 (88)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 3567999999999999999999999999999999999999999999999999999999875
No 23
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=99.51 E-value=2.2e-14 Score=96.60 Aligned_cols=58 Identities=22% Similarity=0.389 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHH----HHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQV----IQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~st----Is~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
++.+|+.+|.++||||.+||+.+|+|+++ |++||+|+..|+.+.+.+||++|||+++.
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~ 63 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSY 63 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 68899999999999999999999999999 99999999999999999999999999863
No 24
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=99.51 E-value=2.5e-14 Score=98.62 Aligned_cols=60 Identities=18% Similarity=0.403 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+.++.+|+.+|+.+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 7 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~ 66 (114)
T 3op9_A 7 QHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSID 66 (114)
T ss_dssp CCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHH
Confidence 345999999999999999999999999999999999999999999999999999999875
No 25
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=99.51 E-value=4.6e-14 Score=93.45 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
+...++..|+.+|.++|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 14 ~~~~l~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~ 75 (92)
T 1lmb_3 14 DARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEE 75 (92)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHH
Confidence 34568889999999999999999999999999999999999999999999999999999863
No 26
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=99.50 E-value=6.7e-14 Score=96.08 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=54.2
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 138 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl 138 (142)
.+...+|++|+.+|+++||||.+||+++|||+++|++||+|+ ++++.+.+|+.+||+.+
T Consensus 32 ~l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~G~--~~~~~l~~i~~aL~~~~ 90 (101)
T 4ghj_A 32 ALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGK--VQLDIMIAILMALDLTE 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTC--CBHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHCCC--CCHHHHHHHHHHcCCCc
Confidence 456779999999999999999999999999999999999996 56788999999999964
No 27
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=99.49 E-value=1.5e-14 Score=89.61 Aligned_cols=57 Identities=30% Similarity=0.369 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
++.+|+.+|.++|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 2 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp EEECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 345789999999999999999999999999999999999999999999999999874
No 28
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=99.49 E-value=4.6e-14 Score=97.68 Aligned_cols=62 Identities=26% Similarity=0.353 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.....|+.+|+.+|..+||||.+||+.+|||+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 24 ~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~~~ 85 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVA 85 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHH
Confidence 45567999999999999999999999999999999999999999999999999999999874
No 29
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=99.48 E-value=2.7e-14 Score=91.05 Aligned_cols=58 Identities=24% Similarity=0.315 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~ 68 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQ 68 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 6788999999999999999999999999999999999999999999999999999863
No 30
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=99.48 E-value=5.5e-14 Score=87.86 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
|+.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.. +.+||++|||+++
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~la~~l~~~~~ 57 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRF-LPELASALGVSVD 57 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTT-HHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchH-HHHHHHHHCcCHH
Confidence 7899999999999999999999999999999999999888777 9999999999874
No 31
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=99.48 E-value=1.5e-14 Score=100.33 Aligned_cols=61 Identities=28% Similarity=0.349 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
...++.+|+.+|+.+||||.+||+.+|||+++|++||+|+..|+.+.+.+||++|||++++
T Consensus 21 ~~~~g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~~~~ 81 (111)
T 3mlf_A 21 QSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDD 81 (111)
T ss_dssp CCSSCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 3457889999999999999999999999999999999999999999999999999999863
No 32
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=99.47 E-value=1e-13 Score=95.46 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=55.1
Q ss_pred HHHHHHHH-HHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQ-ARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~-~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
..|++|++ +|+++||||.+||+.+|||+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 13 ~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs~~ 71 (104)
T 3trb_A 13 HPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPE 71 (104)
T ss_dssp CHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 37999996 89999999999999999999999999999999999999999999999864
No 33
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=99.45 E-value=1.3e-13 Score=86.52 Aligned_cols=57 Identities=28% Similarity=0.272 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|.. .+.+||++|||+++
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~-~l~~i~~~l~~~~~ 59 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPR-FLFEIAMALNCDPV 59 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCS-THHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChH-HHHHHHHHHCCCHH
Confidence 4899999999999999999999999999999999999987654 49999999999874
No 34
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=99.44 E-value=1.1e-13 Score=96.46 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIP------NQQILTKLERALGVKLR 139 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p------~~~~l~kLa~~Lgvsl~ 139 (142)
.+.+|.+|+.+|+++||||.+||+.+|||+++|++||+|+..| ....+.+||++|||+++
T Consensus 5 ~~~lG~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~~Lgv~~~ 70 (112)
T 2wus_R 5 WKELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPD 70 (112)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHHHhCcCHH
Confidence 4579999999999999999999999999999999999998754 34678999999999874
No 35
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=99.44 E-value=8.8e-14 Score=93.23 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCC
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERA--LGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~--Lgvsl~ 139 (142)
.++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++ |+|+++
T Consensus 4 ~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~~~v~~~ 63 (99)
T 2l49_A 4 TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTL 63 (99)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCHH
Confidence 4789999999999999999999999999999999999999999999999999 888775
No 36
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=99.44 E-value=1.2e-13 Score=88.69 Aligned_cols=56 Identities=27% Similarity=0.400 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+.+|+.+|+.+||||.+||+.+|||+++|++||+|+..|+...+ +|+++|+++++
T Consensus 12 ~g~~lr~~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~~-~l~~~l~~~p~ 67 (73)
T 3fmy_A 12 APEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTI-KLLRVLDKHPE 67 (73)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHHH-HHHHHHHHCGG
T ss_pred CHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHH-HHHHHHCCCHH
Confidence 688999999999999999999999999999999999999999988 99999998765
No 37
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=99.43 E-value=3.5e-13 Score=87.31 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH----HHHHHhCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT----KLERALGVKLR 139 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~----kLa~~Lgvsl~ 139 (142)
.+.++.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+. .|+.+|||+++
T Consensus 8 ~~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~ 71 (84)
T 2ef8_A 8 YRCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMD 71 (84)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHH
Confidence 4579999999999999999999999999999999999999999966554 45556699874
No 38
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=99.43 E-value=2.3e-13 Score=90.70 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.++++|+.+|..+|+||.+||+.+|||+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 8 ~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~v~~~ 65 (94)
T 2ict_A 8 RPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQ 65 (94)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHH
T ss_pred ChhHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 4899999999999999999999999999999999999999999999999999999864
No 39
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=99.43 E-value=2.8e-13 Score=95.40 Aligned_cols=61 Identities=16% Similarity=0.093 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~ 139 (142)
+...++.+|+.+|+++||||.+||+++|+|+++|++||+|+. .|+.+.+.+||++|||+++
T Consensus 37 ~~~~lg~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lgv~~~ 98 (120)
T 2o38_A 37 TKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVE 98 (120)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCcE
Confidence 455789999999999999999999999999999999999998 8999999999999999864
No 40
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=99.43 E-value=2.6e-13 Score=92.44 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHhCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESG-KAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G-~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
|+.+|+.+|..+|+||.+||+.+|+|+++|++||+| ...|+.+.+.+||++|||+++
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~ 59 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVH 59 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHH
Confidence 688999999999999999999999999999999999 899999999999999999874
No 41
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=99.42 E-value=8.7e-14 Score=94.04 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
+.++.+|+.+|..+||||.+||+.+|||+++|++||+|+..|+.. +.+|+++|+|+++
T Consensus 29 ~~~~~~lk~~R~~~glsq~elA~~lgvs~~~is~~E~G~~~p~~~-~~~l~~~l~~~~~ 86 (99)
T 2ppx_A 29 APRMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQP-ARAYLKIIAVDPE 86 (99)
T ss_dssp ---CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH-HHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHH-HHHHHHHHCcCHH
Confidence 468999999999999999999999999999999999999999988 7899999999864
No 42
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=99.42 E-value=2.8e-13 Score=92.00 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
..++.+|+.+|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 17 ~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~v~~~ 75 (104)
T 3cec_A 17 IHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPR 75 (104)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHCcCHH
Confidence 35899999999999999999999999999999999999999999999999999999864
No 43
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=99.42 E-value=1.4e-13 Score=98.00 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH------HHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQ------QILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~------~~l~kLa~~Lgvsl~ 139 (142)
.+|++|+++|+++||||.|||+++|+|+++|++||+|+..|.+ ..+.+||++|||+++
T Consensus 3 ~~G~~lr~~R~~~gltq~elA~~~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~v~~~ 66 (130)
T 3fym_A 3 TVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPN 66 (130)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhCCCHH
Confidence 4899999999999999999999999999999999999987765 779999999999875
No 44
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.41 E-value=5.8e-13 Score=99.15 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
+...++.+|+.+|+++||||.+||+++|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 8 ~~~~~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~ 68 (192)
T 1y9q_A 8 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFS 68 (192)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 3467999999999999999999999999999999999999999999999999999999986
No 45
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=99.40 E-value=6.8e-13 Score=98.96 Aligned_cols=61 Identities=20% Similarity=0.424 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~ 139 (142)
..+.++.+|+.+|+++||||.+||+++|+|+++|++||+|+. .|+.+.+.+||++|||+++
T Consensus 7 ~~~~~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~ 68 (198)
T 2bnm_A 7 ASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIG 68 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHH
Confidence 456799999999999999999999999999999999999999 9999999999999999985
No 46
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=99.39 E-value=4.4e-13 Score=92.15 Aligned_cols=58 Identities=9% Similarity=0.139 Sum_probs=55.4
Q ss_pred HHHHHHHH-HHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQ-ARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~-~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+|.+|+. +|..+|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 10 ~~g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~~~~~ 68 (113)
T 2eby_A 10 TPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVD 68 (113)
T ss_dssp CHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 48999998 99999999999999999999999999999999999999999999999864
No 47
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=99.37 E-value=1.2e-12 Score=85.52 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 139 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~ 139 (142)
...++.+|+.+|..+ ||.+||+.+|||+++|++||+|+. .|+.+.+.+||++|||+++
T Consensus 14 ~~~~g~~l~~~R~~~--sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~ 72 (86)
T 2ofy_A 14 GQRLGELLRSARGDM--SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLD 72 (86)
T ss_dssp HHHHHHHHHHHHTTS--CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHC--CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHH
Confidence 356999999999998 999999999999999999999998 8999999999999999864
No 48
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=99.36 E-value=4.6e-13 Score=96.62 Aligned_cols=59 Identities=27% Similarity=0.263 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
..++.+|+.+|..+||||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 67 ~~~g~~L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lgv~~~ 125 (141)
T 3kxa_A 67 KAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPL 125 (141)
T ss_dssp HHSSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHH
Confidence 44678899999999999999999999999999999999999999999999999999874
No 49
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=99.33 E-value=2.7e-12 Score=92.10 Aligned_cols=59 Identities=10% Similarity=0.184 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHH------hCCCCHHHHHHHhC-----CCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 032366 81 SELKKAIVQARN------DKKLTQSQLAQLIN-----EKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 139 (142)
Q Consensus 81 ~~~g~~Lk~~R~------~~glTQ~eLA~~lg-----is~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~ 139 (142)
..|+++|+.+|. ..++||.+||+.+| +|+++|++||+|++ .|+.+.+.+||++|||+++
T Consensus 6 ~~~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~~ 76 (135)
T 3r1f_A 6 TTFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAA 76 (135)
T ss_dssp CCHHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHTSCTH
T ss_pred HHHHHHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhCCCHH
Confidence 359999999999 57899999999999 99999999999997 8999999999999999975
No 50
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=99.30 E-value=1.3e-12 Score=84.56 Aligned_cols=51 Identities=24% Similarity=0.258 Sum_probs=48.4
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCC
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALG--VKL 138 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lg--vsl 138 (142)
+|+.+|+.+| ||.+||+.+|||+++|++||+|+..| .+.+.+||++|| |++
T Consensus 3 ~l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~p-~~~l~~ia~~l~~~v~~ 55 (79)
T 3bd1_A 3 AIDIAINKLG-SVSALAASLGVRQSAISNWRARGRVP-AERCIDIERVTNGAVIC 55 (79)
T ss_dssp HHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCC-GGGHHHHHHHTTTSSCH
T ss_pred HHHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCCC-HHHHHHHHHHHCCCCcH
Confidence 6899999999 99999999999999999999999888 999999999999 874
No 51
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=99.30 E-value=5.4e-12 Score=89.30 Aligned_cols=58 Identities=10% Similarity=0.179 Sum_probs=54.6
Q ss_pred HHHHHHHHHHH------hCCCCHHHHHHHhC-----CCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQARN------DKKLTQSQLAQLIN-----EKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~~R~------~~glTQ~eLA~~lg-----is~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~ 139 (142)
.|+++|..++. ..++||.+||+.+| +|+++|++||+|++ .|+.+.+.+||++|||+++
T Consensus 5 ~~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~ 74 (123)
T 3qwg_A 5 TFAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAA 74 (123)
T ss_dssp CHHHHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSCTH
T ss_pred hHHHHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHH
Confidence 48999999999 66899999999998 99999999999997 8999999999999999985
No 52
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.29 E-value=3.7e-12 Score=98.61 Aligned_cols=58 Identities=28% Similarity=0.348 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
..+|.+|+.+|+++||||.+||+.+ ||+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 4 ~~~g~~i~~~R~~~~~tq~~la~~~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~ 61 (293)
T 3u3w_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPII 61 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHh-CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH
Confidence 4699999999999999999999999 999999999999999999999999999999985
No 53
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=99.25 E-value=9.2e-12 Score=99.83 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCCC
Q 032366 81 SELKKAIVQARND------KKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 81 ~~~g~~Lk~~R~~------~glTQ~eLA~~lgis~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~e 140 (142)
..||.+|+.+|++ +||||.|||+++|||+++|++||+|+. .|+.+.+.+||++|+|+++|
T Consensus 5 ~~lG~~Lr~lR~~~~~~~~~gLtqeelA~~~gvS~~~is~iE~G~~~~ps~~~l~~lA~aL~v~~~e 71 (292)
T 3pxp_A 5 AAFGKLVQALRREHRDEKGRVWTQEVLAERTQLPKRTIERIENGSLAHLDADILLRLADALELTIGE 71 (292)
T ss_dssp HHHHHHHHHHHHTCBCTTSCBCCHHHHHHHHTCCHHHHHHHHHTCCSCCCHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHccCccCcCCCCHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHhcCCCHHH
Confidence 4699999999999 999999999999999999999999997 99999999999999999864
No 54
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=99.21 E-value=1.1e-12 Score=103.51 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+.++++|+.+|+++||||.+||+++|||+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 28 ~~~~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~ 87 (311)
T 4ich_A 28 SDELRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVN 87 (311)
T ss_dssp ------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChh
Confidence 356999999999999999999999999999999999999999999999999999999985
No 55
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=99.17 E-value=2.3e-11 Score=85.86 Aligned_cols=55 Identities=27% Similarity=0.390 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
+.+|+.+|+.+||||.+||+.+|+|+++|++||+|+..|+... .+|+++|+++++
T Consensus 73 ~~~l~~~R~~~glsq~~la~~~g~s~~~i~~~E~g~~~p~~~~-~~l~~~~~~~p~ 127 (133)
T 3o9x_A 73 PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPST-IKLLRVLDKHPE 127 (133)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSSCCCHHH-HHHHHHHHHCGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH-HHHHHHHccCHH
Confidence 5789999999999999999999999999999999999998876 577888887654
No 56
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=99.17 E-value=1.2e-11 Score=99.28 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+|++|+.+|+++|+||.+||+.+ +|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 3 ~ig~~lk~~R~~~gltq~~la~~~-is~~~is~~E~g~~~~~~~~l~~i~~~l~v~~~ 59 (317)
T 2awi_A 3 KIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFF 59 (317)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHh-cCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHH
Confidence 489999999999999999999999 999999999999999999999999999999875
No 57
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.15 E-value=3.3e-12 Score=93.05 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
++.+|+.+|...|+||.+||+++|+|+++|++||+|...|+.+.+.+||++|||++.
T Consensus 2 ig~~lk~~R~~~gltq~elA~~lgis~~~vs~~e~G~~~~~~~~~~~la~~~~v~~~ 58 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYV 58 (158)
T ss_dssp ---------------------------------------------------------
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHH
Confidence 688999999999999999999999999999999999999999999999999999875
No 58
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.15 E-value=2e-11 Score=93.16 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+.++++|+++|+++|+||.+||+.+|+|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 15 ~~~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g~~~p~~~~l~~ia~~l~v~~~ 74 (236)
T 3bdn_A 15 ARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVE 74 (236)
T ss_dssp HHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHH
Confidence 357999999999999999999999999999999999999999999999999999999875
No 59
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.13 E-value=1.2e-11 Score=95.62 Aligned_cols=58 Identities=28% Similarity=0.348 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
+.+|.+|+.+|+.+||||.+||+.+ +|+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 4 ~~~g~~i~~~r~~~~~tq~~la~~~-~s~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~ 61 (293)
T 2qfc_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPII 61 (293)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH-cCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH
Confidence 5699999999999999999999999 999999999999999999999999999999875
No 60
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=99.12 E-value=4.6e-11 Score=78.56 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGV 136 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgv 136 (142)
.....+..+|+.+|. ||+|.+||+.+|||++||+.||+|+..|+.+ .+||++||.
T Consensus 17 ~~~~~~~~kLK~il~--GikQ~eLAK~iGIsqsTLSaIenG~~~PsL~--~kIAk~fg~ 71 (83)
T 2l1p_A 17 WSHTTVRNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS--AAKCQEFGR 71 (83)
T ss_dssp CCHHHHHHHHHHHHT--TSCHHHHHHHSSSCHHHHHHHHTCSSCCCCC--SHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH--hcCHHHHHHHcCCCHHHHHHHHcCCCCCCch--HHHHHHHHH
Confidence 344568889999998 9999999999999999999999999999988 799999974
No 61
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=99.08 E-value=1.2e-10 Score=75.50 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
..+|+.++.++|+||.+||+.+|+|+++|++|+++ |.+.....||++|||+++
T Consensus 11 ~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~~---~~p~~~~~IA~aLgv~~~ 63 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANALER---HWPKGEQIIANALETKPE 63 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS---SCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC---CCccHHHHHHHHHCcCHH
Confidence 56788888899999999999999999999999997 334445569999999975
No 62
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=99.03 E-value=3.6e-10 Score=83.55 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
-.+.++++|+++|..+ ||.+||+++|+|+++|++||+|...| .+.+.+||++|||+++
T Consensus 6 ~~~~~~~rl~~~r~~~--tq~elA~~~Gis~~~i~~~e~g~~~p-~~~l~~ia~~~~v~~~ 63 (189)
T 2fjr_A 6 SNVDVLDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAIS-YDFAAHCALETGANLQ 63 (189)
T ss_dssp CHHHHHHHHHHHHTCS--SHHHHHHHTTCCHHHHHHHHHSSSCC-HHHHHHHHHHHCCCHH
T ss_pred ccHHHHHHHHHHHhhc--CHHHHHHHhCcCHHHHHHHHhCCCCC-HHHHHHHHHHHCCCHH
Confidence 3467999999999877 99999999999999999999999999 9999999999999863
No 63
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=98.83 E-value=8.9e-09 Score=76.60 Aligned_cols=46 Identities=11% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTK 129 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~k 129 (142)
.++|+.+|+++||||.++|+.+|||+++|++||+|++.++...+.+
T Consensus 92 ~~~lk~lR~~~glTQ~elA~~LGvsr~tis~yE~G~r~iP~~~~la 137 (170)
T 2auw_A 92 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIWLA 137 (170)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 4589999999999999999999999999999999998777776543
No 64
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=98.67 E-value=5.5e-08 Score=71.29 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 139 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl~ 139 (142)
..+.++|..+|.++|||+++||+.+|+|...+..+|.|+..|+.+.+.+|+++||++.+
T Consensus 12 ~~~~~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e 70 (156)
T 1dw9_A 12 LDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDED 70 (156)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHH
Confidence 56889999999999999999999999999999999999999999999999999998754
No 65
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=98.60 E-value=8.6e-11 Score=82.43 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHcC------CCCCCHHHHHHHHHHhCCCCCC
Q 032366 91 RNDKKLTQSQLAQLINEKPQVIQEYESG------KAIPNQQILTKLERALGVKLRG 140 (142)
Q Consensus 91 R~~~glTQ~eLA~~lgis~stIs~~E~G------~~~p~~~~l~kLa~~Lgvsl~e 140 (142)
|+ +||||.+||+++|+|+++|++||+| +..|+...+.+||..|+|++++
T Consensus 2 R~-~glTQ~eLA~~~Gvs~~~is~~E~G~~~~~~~~~p~~~~l~~la~~l~v~~~~ 56 (122)
T 1nr3_A 2 RE-RGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPVRILCRR 56 (122)
T ss_dssp CC-CSCSSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCEEEEECC
T ss_pred cc-cCCCHHHHHHHhCCCHHHHHHHHcCCCccchhcccCHHHHHHHHHHHcccccc
Confidence 55 8999999999999999999999999 8889999999999999998753
No 66
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=98.46 E-value=2.6e-07 Score=57.15 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=34.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 138 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl 138 (142)
++||.+||+.+|||+++|++|| ...| ...+..|+++||..+
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we--~~~p-~~~~~~i~~~~~g~v 50 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK--EVIP-EKDAYRLEIVTAGAL 50 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC--SBCC-HHHHHHHHHHTTSCS
T ss_pred cCCHHHHHHHhCCCHHHHHHHH--hhCC-HHHHHHHHHHHCCCc
Confidence 4699999999999999999999 3344 456669999999655
No 67
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=98.30 E-value=1.6e-06 Score=54.59 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=37.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCC---CCCHHHHHHH---HHHhCCCCC
Q 032366 96 LTQSQLAQLINEKPQVIQEYESGKA---IPNQQILTKL---ERALGVKLR 139 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~G~~---~p~~~~l~kL---a~~Lgvsl~ 139 (142)
+|+.|||+.+|+|++||+++++|+. .++.++..+| ++.||..++
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn 50 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN 50 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCcc
Confidence 5899999999999999999999998 7887766654 556888765
No 68
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.26 E-value=2.9e-06 Score=65.35 Aligned_cols=52 Identities=12% Similarity=0.054 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHH
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKL 130 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kL 130 (142)
-...++..|+.+|..+||||.+||+.+|||+++|++||++....+...+..+
T Consensus 28 ~~~~~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~~g~~~t~~k~a~~ 79 (221)
T 2h8r_A 28 DPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAAL 79 (221)
T ss_dssp CHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCchhHHHHHHH
Confidence 3467899999999999999999999999999999999997776676655444
No 69
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=98.25 E-value=3.3e-07 Score=69.29 Aligned_cols=54 Identities=9% Similarity=0.147 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHH----------------HcCCCCCCHHHHHHHHHHh
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEY----------------ESGKAIPNQQILTKLERAL 134 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~----------------E~G~~~p~~~~l~kLa~~L 134 (142)
..++|.++..+ ...|+||.++|+.+|||+++|+++ ++|...|+...|.++++.|
T Consensus 10 l~eiG~ria~~-y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp~~~~ls~p~~~~L~k~~~~l 79 (192)
T 1zx4_A 10 IREIGLRLMRM-KNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEM 79 (192)
T ss_dssp HHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HHcCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHcCCcccCccchHHHHHHHHHHh
Confidence 45689999998 789999999999999999999997 6899999999999999999
No 70
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=98.22 E-value=1.6e-06 Score=70.49 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 139 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~ 139 (142)
.+-.|+..|...|+||.+||++.||++..|+.+|+|+. .+..+.+.+|+++|+|+.+
T Consensus 231 agv~LR~ar~ReglTQ~~LAe~TGIPq~hISeMenGKr~~IGkdeaR~LA~ALnvDYR 288 (443)
T 3g7d_A 231 AGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYR 288 (443)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHhcCCcCCccHHHHHHHHHHhCCCch
Confidence 47789999999999999999999999999999999999 5599999999999999875
No 71
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=98.13 E-value=5e-06 Score=52.55 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=38.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVKLR 139 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~---l~kLa~~Lgvsl~ 139 (142)
.+|+.|+|+.+|||++||+++++|...++.+. +.++++.||..++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC-
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcc
Confidence 47999999999999999999999998788776 5556888988765
No 72
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.08 E-value=1.3e-05 Score=60.66 Aligned_cols=50 Identities=8% Similarity=0.030 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILT 128 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~ 128 (142)
-+..|+..|+.++..+|+||.+||+.+|+|+++|++|++|...++.....
T Consensus 27 ~p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~~~~~~~kra 76 (194)
T 1ic8_A 27 DPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRA 76 (194)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHhcCccccccccc
Confidence 45568999999999999999999999999999999999988777665433
No 73
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=98.03 E-value=5.4e-06 Score=51.10 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQ 124 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~ 124 (142)
+|+.+|.+.| ||.++|+.+|+|+++|++||+|...|++
T Consensus 5 ~l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~~~~~~~l 42 (67)
T 2pij_A 5 PLSKYLEEHG-TQSALAAALGVNQSAISQMVRAGRSIEI 42 (67)
T ss_dssp EHHHHHHHTC-CHHHHHHHHTSCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcC-CHHHHHHHHCcCHHHHHHHHcCCCCCCe
Confidence 5788999999 9999999999999999999999876643
No 74
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=97.98 E-value=2.8e-05 Score=54.32 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhC--CCHHHHHHHHcCCCCCCHHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLIN--EKPQVIQEYESGKAIPNQQILTKLER 132 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lg--is~stIs~~E~G~~~p~~~~l~kLa~ 132 (142)
+..|+.+|..+||||.|.|..++ +|..+..+||+|+...+++++..+..
T Consensus 5 ~~ELkalR~ilgLt~~EaA~~i~~~vs~rtWQqWE~G~~~IP~~i~e~~~~ 55 (120)
T 1s4k_A 5 ALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE 55 (120)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhccCCHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 44689999999999999999998 99999999999999998888776653
No 75
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=97.57 E-value=0.00013 Score=46.55 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=33.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 032366 97 TQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 138 (142)
Q Consensus 97 TQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl 138 (142)
+|.+||+.||||+++|++|++|...| ......|..+-+-.+
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g~~iP-~~~~~~Ie~~T~G~v 52 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQAGEIP-PLRQSDIEVRTAYKL 52 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHHTSCC-HHHHHHHHHHTTTSS
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCCCC-HHHHHHHHHHhCCcc
Confidence 69999999999999999999886544 666778887776544
No 76
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=97.53 E-value=8.7e-05 Score=55.13 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhCCC--CHHHHHHHhCCC-HHHHHHHHc
Q 032366 80 PSELKKAIVQARNDKKL--TQSQLAQLINEK-PQVIQEYES 117 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~gl--TQ~eLA~~lgis-~stIs~~E~ 117 (142)
...+.++|+++|+++|+ ||.+||+.+|++ +++|++|++
T Consensus 8 q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 8 QQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 34689999999999999 999999999999 999999987
No 77
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=97.44 E-value=0.00016 Score=48.43 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC-CCCCHHHHHHHHHHhCC
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK-AIPNQQILTKLERALGV 136 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~-~~p~~~~l~kLa~~Lgv 136 (142)
..|.++....++|..+||+.+|||.+||+++.++. ..++.++..++.++||.
T Consensus 10 ~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~~~~~Vs~~tr~rV~~algY 62 (93)
T 2l0k_A 10 IKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDY 62 (93)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTTHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHHCC
Confidence 44556666667999999999999999999999997 67889999999888764
No 78
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=97.33 E-value=0.00025 Score=44.44 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=28.7
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIP 122 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p 122 (142)
|+.++... ||.++|+.+|+|+++|++|+++.+..
T Consensus 7 Lk~l~~~~--sq~~~A~~Lgvsq~aVS~~~~~~r~i 40 (65)
T 2cw1_A 7 LKKFVEDK--NQEYAARALGLSQKLIEEVLKRGLPV 40 (65)
T ss_dssp HHHHHTTS--CHHHHHHHSSSCHHHHHHHHHTTCCC
T ss_pred HHHHHHHc--CHHHHHHHhCCCHHHHHHHHHhcCCc
Confidence 66677765 99999999999999999999865543
No 79
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=97.14 E-value=0.00052 Score=45.09 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=33.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 138 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl 138 (142)
-++|..+|+.+|++.++|++|.+|. .+.+..|..+||..+
T Consensus 24 ~~gQ~~vAe~~GvdeStISR~k~~~----~~~~~~lLa~Lglkv 63 (83)
T 1zs4_A 24 MLGTEKTAEAVGVDKSQISRWKRDW----IPKFSMLLAVLEWGV 63 (83)
T ss_dssp HHCHHHHHHHHTSCHHHHHHHHHHT----HHHHHHHHHHHTTCC
T ss_pred HHhhHHHHHHhCCCHHHHhhhhhhH----HHHHHHHHHHhccCC
Confidence 3689999999999999999999974 556677777788765
No 80
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.96 E-value=0.0028 Score=35.44 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESG 118 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G 118 (142)
......+..+. ..|+|..++|+.+|||++||.+|.+.
T Consensus 8 ~~~~~~i~~~~-~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 8 DTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 33444444443 57999999999999999999999753
No 81
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=96.90 E-value=5.5e-05 Score=51.21 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=31.9
Q ss_pred HhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC
Q 032366 92 NDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKL 138 (142)
Q Consensus 92 ~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lgvsl 138 (142)
.-.+++|..||+.+||+.++|++|++|.. +....+..+. .|+|.+
T Consensus 20 ~la~~gq~~vA~~iGV~~StISR~k~~~~-~~~~~lLa~l-~l~v~~ 64 (97)
T 1xwr_A 20 KIAMLGTEKTAEAVGVDKSQISRWKRDWI-PKFSMLLAVL-EWGVVD 64 (97)
T ss_dssp HHHHHCHHHHHHHHTCCTTTHHHHHHHHH-HHHHHHHHHH-HHCCCH
T ss_pred HHHHHhHHHHHHHhCCCHHHHHHHHhhhH-HHHHHHHHHH-hcCCCh
Confidence 34567999999999999999999999752 2333333333 566654
No 82
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.86 E-value=0.0028 Score=37.16 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.....+..+ ...|+|+.++|+.+|+|++||++|.+
T Consensus 19 ~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 19 DLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344555555 46899999999999999999999874
No 83
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=96.84 E-value=0.00065 Score=52.98 Aligned_cols=102 Identities=12% Similarity=0.126 Sum_probs=27.2
Q ss_pred eeccCCCCCccccCHHHHHHHHHcCCChhHHHhhhcCCCCCCCCCCCcccccchhhhc----cccCC-------------
Q 032366 15 VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTE----NLAHD------------- 77 (142)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~a~r~G~~v~t~kk~~~g~~~~~~~~~~~~~~kl~~~~~----~~~~~------------- 77 (142)
.||.+-..-...++-++-..|.+.|++.+|+.+||.|...+.. ..+.++..... .|-..
T Consensus 30 ~~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~----~~l~~ia~~l~~~~~~l~~~~~~~~~~~~~~~~ 105 (311)
T 4ich_A 30 ELRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNGTRRFSP----HELVRIAEHSGVTVNWLINGRDDARTVAAVPAP 105 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH----HHHHHHHHHHCCChhhhhcCCCccccccCCCCc
Confidence 3565544444455557778999999999999999999876422 22222222111 00000
Q ss_pred --------------cchHHHHHHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 78 --------------RVPSELKKAIVQARNDK---KLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 78 --------------~~~~~~g~~Lk~~R~~~---glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.....+-+...++-.+. ++|..++|+.+|||+.+|++|-.++.
T Consensus 106 ~~~~~~~~~~~~~~~~r~~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gtlY~yF~sKe 165 (311)
T 4ich_A 106 TARSRSAPAGEPQSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKK 165 (311)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHH
Confidence 00011222223333333 57999999999999999999976653
No 84
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=96.63 E-value=0.003 Score=46.03 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=32.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCH-HHHHHHHHHh
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGKAIPNQ-QILTKLERAL 134 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~~~p~~-~~l~kLa~~L 134 (142)
|+|+.++|+.+|||++||++|.+. .|.. +.+.++++.|
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~--~p~~~~~l~~vad~~ 86 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK--NQDFIAFKSEVADSF 86 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH--CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc--CcchHHHHHHHHHHH
Confidence 899999999999999999999985 4653 6777777764
No 85
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=96.46 E-value=0.0058 Score=41.46 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=32.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALG 135 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kLa~~Lg 135 (142)
.+||.|+|+.+|+|++||+++-+.-...+.+.-..|...|.
T Consensus 58 e~TQREIA~~lGiS~stISRi~r~L~~l~~~~k~~l~~~l~ 98 (101)
T 1jhg_A 58 EMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL 98 (101)
T ss_dssp CSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHCCChhhhhHHHHHHHHccHHHHHHHHHHhc
Confidence 39999999999999999999965544556677667766664
No 86
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=96.42 E-value=0.0045 Score=35.12 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+..+. ..|+|..++|+.+|||++||.+|.+..
T Consensus 13 ~i~~l~-~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 13 QISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHH-HTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 344443 468999999999999999999998643
No 87
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=95.96 E-value=0.05 Score=37.03 Aligned_cols=76 Identities=8% Similarity=0.081 Sum_probs=50.2
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhC--C
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLIN--E 107 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lg--i 107 (142)
+.-..|+..|++..|+.+|-.-.... +.. .. .-.+..+....-..|..+.....+|..+|+..+| +
T Consensus 24 s~~~ia~~lgis~~Tv~r~~~~~~~~-----g~~--~~-----~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~ 91 (141)
T 1u78_A 24 SLHEMSRKISRSRHCIRVYLKDPVSY-----GTS--KR-----APRRKALSVRDERNVIRAASNSCKTARDIRNELQLSA 91 (141)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHSGGGT-----TCC--CC-----CCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCS
T ss_pred CHHHHHHHHCcCHHHHHHHHHccccc-----CCc--CC-----CCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCc
Confidence 34567899999999999997532220 000 00 0111233344445555556667899999999999 8
Q ss_pred CHHHHHHHHc
Q 032366 108 KPQVIQEYES 117 (142)
Q Consensus 108 s~stIs~~E~ 117 (142)
|.+||.+|..
T Consensus 92 s~~tV~r~l~ 101 (141)
T 1u78_A 92 SKRTILNVIK 101 (141)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999999985
No 88
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=95.75 E-value=0.017 Score=44.78 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=35.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVKL 138 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~---l~kLa~~Lgvsl 138 (142)
..|.+|+|+++|||.+|||+..||....+.++ +.+.++.||..+
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr~rV~~aa~~lgY~p 48 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRP 48 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 36899999999999999999999987777665 445567787655
No 89
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=95.53 E-value=0.019 Score=44.78 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=37.2
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCC
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVKLR 139 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~---l~kLa~~Lgvsl~ 139 (142)
.+..|.+|+|+++|||.+|||+..||....+.++ +.+.++.||..+.
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn 57 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPN 57 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 3458999999999999999999999987777665 5555677887654
No 90
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=95.49 E-value=0.028 Score=36.24 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+..++-..+..+. ..|.|..++|+.+|||++||.+|.+
T Consensus 22 ~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 22 SLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34445544444444 3689999999999999999999974
No 91
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=95.40 E-value=0.033 Score=37.68 Aligned_cols=35 Identities=9% Similarity=-0.021 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
....+..+--..|+||.++|+.+|+|+++|+++..
T Consensus 22 ~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~ 56 (101)
T 2w7n_A 22 QTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVH 56 (101)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 33445555667899999999999999999998764
No 92
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=95.39 E-value=0.036 Score=33.05 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.6
Q ss_pred chHHHHHHHHHHHHhCCCC----HHHHHHHhCCCHHHHHHHHc
Q 032366 79 VPSELKKAIVQARNDKKLT----QSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glT----Q~eLA~~lgis~stIs~~E~ 117 (142)
...+|-..+.. ..+.|.| ..++|+.+||++++|.+|..
T Consensus 6 ys~efK~~~~~-~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 6 FTPHFKLQVLE-SYRNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCHHHHHHHHH-HHHHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCHHHHHHHHH-HHHcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 44566666633 3446789 99999999999999999975
No 93
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=95.26 E-value=0.016 Score=36.12 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=25.0
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
|+++.... |+.++|+.|||++++|++|.++.
T Consensus 7 L~~~~~~~--s~t~aA~~L~vtQ~AVS~~ir~~ 37 (66)
T 2ovg_A 7 LKDYAMRF--GQTKTAKDLGVYPSSINQAIHAG 37 (66)
T ss_dssp HHHHHHHH--CHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHC--CHHHHHHHhCCCHHHHHHHHHhC
Confidence 44554444 99999999999999999998743
No 94
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=95.14 E-value=0.038 Score=35.96 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHhCCCHHHHHHHHc
Q 032366 79 VPSELKKAIVQARNDK-KLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~-glTQ~eLA~~lgis~stIs~~E~ 117 (142)
+..++-..+-.+.... |+|..++|+.+|||++||.+|.+
T Consensus 6 ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 6 YSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHH
Confidence 3445554454444445 89999999999999999999974
No 95
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=95.06 E-value=0.02 Score=45.09 Aligned_cols=45 Identities=7% Similarity=0.056 Sum_probs=36.1
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCC
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVK 137 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~---l~kLa~~Lgvs 137 (142)
.+..|.+|+|+++|||.+|||+..||....+.++ +.+.++.||..
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~ 54 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYL 54 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC-
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 4557899999999999999999999987666554 55667777765
No 96
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=95.00 E-value=0.025 Score=40.89 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCC------CHHHHHHHHcC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINE------KPQVIQEYESG 118 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgi------s~stIs~~E~G 118 (142)
..|+..++..|...|+||.+++..+|. |+++|+++|.=
T Consensus 10 ~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l 53 (160)
T 1e3o_C 10 EQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 53 (160)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHhhccccCCCcCcccccccccc
Confidence 569999999999999999999999998 99999999975
No 97
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=94.90 E-value=0.086 Score=35.45 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHh-CCCHHHHHHHHcCCCCCC------HHHHHHHHHHhCCCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLI-NEKPQVIQEYESGKAIPN------QQILTKLERALGVKL 138 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~l-gis~stIs~~E~G~~~p~------~~~l~kLa~~Lgvsl 138 (142)
+...+...|....+.++++|.-||+.+ +-|+.+++.+.+-+..|. .+.|.+|-..|+.+.
T Consensus 18 ~Tk~i~~~I~~ELK~~~IsQa~FAk~vlnRsQGtLSelLR~~enPkP~~~~lW~~Lk~m~nWL~Lpe 84 (101)
T 2csf_A 18 ITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQ 84 (101)
T ss_dssp CCTHHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSCH
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHhchhHHHHHHhcccCCCcchhhHHHHHHHHHHHHcCCH
Confidence 456799999999999999999999976 899999999998554554 366777777777653
No 98
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=94.78 E-value=0.033 Score=40.52 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHH
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINE------KPQVIQEYESGKAIPNQQILTKL 130 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgi------s~stIs~~E~G~~~p~~~~l~kL 130 (142)
..|++.++..|...|+||.+++..+|. |+++|+++|+=. .+...+.+|
T Consensus 16 ~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~--ls~kn~~kl 69 (164)
T 2xsd_C 16 EQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQ--LSFKNMCKL 69 (164)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTC--SBHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhccC--CCHHHHHHc
Confidence 568999999999999999999999887 999999999643 344444443
No 99
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=94.73 E-value=0.027 Score=40.21 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHH
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINE------KPQVIQEYESGKAIPNQQILTKL 130 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgi------s~stIs~~E~G~~~p~~~~l~kL 130 (142)
..|+..++..|...|+||.+++..+|. |+++|+++|+=. .+...+.+|
T Consensus 6 ~~fa~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~--ls~knm~kL 59 (146)
T 1au7_A 6 EQFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQ--LSFKNACKL 59 (146)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTC--SBHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccC--CChHHHHhc
Confidence 468899999999999999999999987 999999999743 344444443
No 100
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=94.60 E-value=0.075 Score=35.91 Aligned_cols=56 Identities=9% Similarity=0.099 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHH-hCCCHHHHHHHHcCCCCC---C---HHHHHHHHHHhC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQL-INEKPQVIQEYESGKAIP---N---QQILTKLERALG 135 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~-lgis~stIs~~E~G~~~p---~---~~~l~kLa~~Lg 135 (142)
...+...|++.....++||..||+. +|.++.+|+.+.+--..- . .+...++-..|.
T Consensus 19 Tk~I~~~ike~L~~~~isQ~~FA~~VLgrsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~nWL~ 81 (101)
T 1x2l_A 19 TAEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLS 81 (101)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHccccchHHHHhcCCCCHHHHhHhhhHHHHHHHHHcc
Confidence 4568999999999999999999998 899999999999854321 1 344555555544
No 101
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=94.60 E-value=0.079 Score=35.09 Aligned_cols=38 Identities=8% Similarity=0.239 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
+..++...|..+. ..|+|..++|+.+|+|++||.+|.+
T Consensus 18 ~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 18 LPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp CCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4455656665555 4799999999999999999999964
No 102
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=94.45 E-value=0.091 Score=35.68 Aligned_cols=38 Identities=8% Similarity=0.159 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
+..+....|..+. ..|+|..++|+.+|+|++||.+|.+
T Consensus 7 ~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~ 44 (141)
T 1u78_A 7 LSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLK 44 (141)
T ss_dssp CCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344555555555 5799999999999999999999974
No 103
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=94.43 E-value=0.024 Score=34.93 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=21.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Q 032366 96 LTQSQLAQLINEKPQVIQEYESG 118 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~G 118 (142)
||..|+|+.+|||++||.+|...
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 68899999999999999999974
No 104
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=94.08 E-value=0.0091 Score=46.47 Aligned_cols=45 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVKL 138 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~---l~kLa~~Lgvsl 138 (142)
...|.+|+|+++|||.+|||+..||....+.++ +.+.++.||..+
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~p 51 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRP 51 (332)
T ss_dssp ------------------------------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 357999999999999999999999976555554 455566677544
No 105
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=93.89 E-value=0.17 Score=35.07 Aligned_cols=39 Identities=8% Similarity=0.236 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+..++...|..+. ..|+|..++|+.+|+|++||.+|.+
T Consensus 32 ~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 32 PLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45566666666665 4799999999999999999999964
No 106
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=93.76 E-value=0.37 Score=34.20 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHH
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINE------KPQVIQEYESGKAIPNQQILTKL 130 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgi------s~stIs~~E~G~~~p~~~~l~kL 130 (142)
..|++.++..|...|+||.+++..+|. |+++|+++|.-.. +...+.++
T Consensus 7 ~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~l--s~kn~~kl 60 (151)
T 3d1n_I 7 REFAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDI--TPKSAQKL 60 (151)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCS--CHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCC--ChhHHHHh
Confidence 468999999999999999999999997 9999999997643 44444433
No 107
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=93.71 E-value=0.17 Score=32.03 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=38.5
Q ss_pred HHHHHcCCChhHHHhhhc--CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHh
Q 032366 33 NAARRAGADIETVRKSHA--GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLI 105 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~--g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~l 105 (142)
+.|+..|+++.|++.|+. |-..+.....+ .-..++.+ ....-..|+.+|...|+|.+++.+.+
T Consensus 10 e~A~~~gvs~~tlR~ye~~~gl~~p~r~~~~-g~R~Y~~~---------dl~~l~~I~~l~~~~G~sl~ei~~~l 74 (81)
T 2jml_A 10 TIARMTGIREATLRAWERRYGFPRPLRSEGN-NYRVYSRE---------EVEAVRRVARLIQEEGLSVSEAIAQV 74 (81)
T ss_dssp HHHHTTSTTHHHHHHHHHHTCCSCCBSSSCS-SSCEECHH---------HHHHHHHHHHHHHHTSTHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHhCCCCCCcCCCCC-CeeecCHH---------HHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 578999999999999987 43332211100 11112211 11234557777768899999988765
No 108
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=93.57 E-value=0.17 Score=34.49 Aligned_cols=37 Identities=14% Similarity=0.065 Sum_probs=29.6
Q ss_pred HHHHHHHHHH-HHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 81 SELKKAIVQA-RNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 81 ~~~g~~Lk~~-R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..++.|++-+ ....|+|+.++++.+|+|.+||+++-+
T Consensus 43 ~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 43 LSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 3466666544 355799999999999999999999765
No 109
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=93.54 E-value=0.14 Score=30.62 Aligned_cols=33 Identities=9% Similarity=-0.010 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+-.++-..|+|..++|+.+|+|.++|..+..
T Consensus 21 r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ 53 (70)
T 2o8x_A 21 REALLLTQLLGLSYADAAAVCGCPVGTIRSRVA 53 (70)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344455667899999999999999999998753
No 110
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=93.54 E-value=0.11 Score=43.99 Aligned_cols=50 Identities=6% Similarity=0.042 Sum_probs=33.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHh------CCCHHHHHHHHcCCCCC---CHHHHHHHHHHhCC
Q 032366 85 KAIVQARNDKKLTQSQLAQLI------NEKPQVIQEYESGKAIP---NQQILTKLERALGV 136 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~l------gis~stIs~~E~G~~~p---~~~~l~kLa~~Lgv 136 (142)
+.|++++. -+||++||+.| +++..+|.+||+|+..| +...+..|-..+-.
T Consensus 21 ~~~~~~~~--~~~~~~~a~~l~~~~~~~~~~~~~~rw~~~~~~~~~~~~~~~~~l~~~~~~ 79 (482)
T 3me5_A 21 AMLEKLLQ--IYDVKMLVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLLPK 79 (482)
T ss_dssp HHHHHHHT--TSCHHHHHHHHHHTCSSCCCHHHHHHHHC-------CCTHHHHHHHTTSCC
T ss_pred HHHHHHHH--HcCHHHHHHHHHhhccCCCCHHHHHHHHcCCCCCccccHHHHHHHHhhCCC
Confidence 44566555 48999999999 89999999999998766 34455556555544
No 111
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=93.53 E-value=0.15 Score=37.60 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHH
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKL 130 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kL 130 (142)
+.+.+..++.+... |+||.++|+++|+|+++|+++.+=-. .++.++..|
T Consensus 38 piE~A~a~~~L~~~-G~t~eeiA~~lG~s~s~V~~~LrLl~-Lp~~v~~~v 86 (178)
T 1r71_A 38 PREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLD-LPEKIADAF 86 (178)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHTCCHHHHHHHHGGGS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHCcCHHHHHHHHHHHc-CCHHHHHHH
Confidence 34556666666654 99999999999999999999976322 333444443
No 112
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=93.48 E-value=0.12 Score=31.26 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.7
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..|+|.+|+|+.+|+|.++|..+..
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4699999999999999999998864
No 113
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=93.43 E-value=0.13 Score=36.95 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhC------CCHHHHHHHHcCCCCCCHHHHHHH
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLIN------EKPQVIQEYESGKAIPNQQILTKL 130 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lg------is~stIs~~E~G~~~p~~~~l~kL 130 (142)
..|+..++..|...|+||.+++..+| +|+++|.++|.-. .+...+.+|
T Consensus 13 ~~fa~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~--ls~~nm~kL 66 (155)
T 3l1p_A 13 EQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQ--LSLKNMSKL 66 (155)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTC--SCHHHHHHH
T ss_pred HHHHHHHHhhhheecccHHHHHHHHHhhcCccccccccccccccc--CChhhHhhc
Confidence 46889999999999999999888754 7999999999753 344444443
No 114
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.33 E-value=0.14 Score=32.86 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
+.+-.++...|+|.+++|+.+|+|.++|..+..
T Consensus 43 r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 43 RAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344456677899999999999999999998764
No 115
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=93.32 E-value=0.14 Score=35.60 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=28.8
Q ss_pred HHHHHHHHHH-HhCCCCHHHHHHHhCCCHHHHHHHHcC
Q 032366 82 ELKKAIVQAR-NDKKLTQSQLAQLINEKPQVIQEYESG 118 (142)
Q Consensus 82 ~~g~~Lk~~R-~~~glTQ~eLA~~lgis~stIs~~E~G 118 (142)
.+..|++-++ ...|+|+.++|+.+|+|..||+++-+.
T Consensus 61 aLs~R~eV~klL~~G~syreIA~~~g~S~aTIsRv~r~ 98 (119)
T 3kor_A 61 SLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4566654442 446899999999999999999998764
No 116
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.28 E-value=0.1 Score=33.10 Aligned_cols=32 Identities=9% Similarity=0.017 Sum_probs=25.4
Q ss_pred HHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDK---KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~---glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..++..- ++|..+||+.+|+++++|++..
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3445556666 7999999999999999998764
No 117
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=93.12 E-value=0.07 Score=33.91 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCCCCCCCCCcccccchhhhccccCCcc
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRV 79 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~~~~~~~~~~~~kl~~~~~~~~~~~~ 79 (142)
++-..|.+.|++.+|+.+||.|... +.+..+..-...|..+..
T Consensus 29 tq~elA~~~gis~~~is~~E~G~~~-------p~~~~l~~ia~~l~v~~~ 71 (86)
T 3eus_A 29 TQADLAERLDKPQSFVAKVETRERR-------LDVIEFAKWMAACEGLDV 71 (86)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSC-------CBHHHHHHHHHHTTCGGG
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCC-------CCHHHHHHHHHHcCCCcH
Confidence 4567899999999999999999876 344444444445554433
No 118
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=93.05 E-value=0.12 Score=36.45 Aligned_cols=38 Identities=8% Similarity=0.240 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
+..++...|..+. ..|+|..++|+.+|+|++||.+|.+
T Consensus 26 ~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 26 LPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp SCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4455555665555 4699999999999999999999985
No 119
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=93.03 E-value=0.017 Score=44.97 Aligned_cols=45 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHH---HHHHHHHHhCCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKAIPNQQ---ILTKLERALGVKL 138 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~---~l~kLa~~Lgvsl 138 (142)
+..|.+|+|+++|||.+|||+..||....+.+ .+.+.++.||..+
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~p 50 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAYVP 50 (339)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 34789999999999999999999997655544 4555566666654
No 120
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.98 E-value=0.2 Score=30.77 Aligned_cols=31 Identities=13% Similarity=0.298 Sum_probs=25.5
Q ss_pred HHHHHHh----CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 87 IVQARND----KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 87 Lk~~R~~----~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
|-.++-- .|+|..|+|+.+|+|.++|..+..
T Consensus 18 il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 18 VLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp HHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4444554 799999999999999999998764
No 121
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=92.90 E-value=0.19 Score=33.94 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHH-HhCCCHHHHHHHHcCCCC---CC---HHHHHHHHHHhCCCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQ-LINEKPQVIQEYESGKAI---PN---QQILTKLERALGVKLRG 140 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~-~lgis~stIs~~E~G~~~---p~---~~~l~kLa~~Lgvsl~e 140 (142)
..++...|++++...+++|+.||+ .+|.++.+|+++.+.-.. .+ .+...++-..|..+.++
T Consensus 19 Tk~I~~~ike~L~~~~isQ~~FA~~ILgrsqgtlSdlL~~PKpW~~L~~~Gre~fiRM~nWL~l~e~q 86 (101)
T 1wh6_A 19 TLELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQ 86 (101)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHccCcCcHHHHhcCCCCHHHHhHHhHHHHHHHHHHhCCcHHH
Confidence 457999999999999999999999 779999999999985432 22 45677777777766554
No 122
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=92.87 E-value=0.18 Score=38.38 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHH
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKL 130 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~l~kL 130 (142)
.+.+..++.+. +.|+|+.++|+.+|+|+++|+++..=- ..+.+++..+
T Consensus 121 ~E~a~~~~~l~-~~g~t~~~iA~~lG~s~~~V~~~l~l~-~l~~~v~~~l 168 (230)
T 1vz0_A 121 VEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLL-QLPPEALEAL 168 (230)
T ss_dssp HHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGG-GSCHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH-cCCHHHHHHH
Confidence 44566666666 789999999999999999999987632 2334444444
No 123
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, Pro structure initiative; 1.70A {Shewanella oneidensis} SCOP: a.35.1.6
Probab=92.84 E-value=0.64 Score=32.81 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=35.9
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHH
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQ 125 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~ 125 (142)
.|+.+|...|+|..++++..+.|..-|-.||.|....+.-
T Consensus 11 e~~ylr~slgl~~aqv~~l~k~se~dv~aweage~~~~~l 50 (166)
T 2ox6_A 11 EMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPEL 50 (166)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH
T ss_pred hHHHHHHHcCCCHHHHHHHhccCHHHhhhhhhcCCcCcch
Confidence 4788999999999999999999999999999999766543
No 124
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=92.75 E-value=0.23 Score=29.92 Aligned_cols=34 Identities=12% Similarity=-0.036 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
...|.......+.++.+.|+.+|||++++.+..+
T Consensus 21 ~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 21 KIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3556788888999999999999999999998764
No 125
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.72 E-value=0.18 Score=32.44 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=23.7
Q ss_pred HHHHHHhC---CCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDK---KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~---glTQ~eLA~~lgis~stIs~~E 116 (142)
|..++..- .+|..+||+.+|+|+++|.+..
T Consensus 16 L~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 16 LKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 34455555 6999999999999999988763
No 126
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=92.68 E-value=0.2 Score=33.92 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHHHHhCCC-CHHHHHHHhCCCHHHHHHHHcCC
Q 032366 78 RVPSELKKAIVQARNDKKL-TQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~gl-TQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+..++-..+-.+-.+.|. ++.++|+.+||+++||++|.++.
T Consensus 7 ~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp CCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred eCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhch
Confidence 3455565555544434454 56699999999999999998774
No 127
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=92.61 E-value=0.022 Score=44.33 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHH---HHHHHHHHhCCCC
Q 032366 96 LTQSQLAQLINEKPQVIQEYESGKAIPNQQ---ILTKLERALGVKL 138 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~G~~~p~~~---~l~kLa~~Lgvsl 138 (142)
.|.+|+|+.+|||.+|||+..||....+.+ .+.+.++.||..+
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~p 49 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRP 49 (338)
T ss_dssp ----------------------------------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 588999999999999999999997655444 4556677777654
No 128
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=92.57 E-value=0.15 Score=29.85 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=30.2
Q ss_pred HhCCCCHHHHHHHhCCCHHHHHHHHcCC----CCCCHHHHHHHHHHhC
Q 032366 92 NDKKLTQSQLAQLINEKPQVIQEYESGK----AIPNQQILTKLERALG 135 (142)
Q Consensus 92 ~~~glTQ~eLA~~lgis~stIs~~E~G~----~~p~~~~l~kLa~~Lg 135 (142)
...|+|.+|+|+.+|+|.+||..+-..- ...+...+..++...|
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~~~~~~g 57 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMR 57 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHCSC
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcC
Confidence 4679999999999999999999876421 2334444444444443
No 129
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=92.45 E-value=0.23 Score=31.10 Aligned_cols=30 Identities=7% Similarity=0.023 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
|..+.....+|..|||+.+|+|+++|+++.
T Consensus 6 l~~L~~~~~~s~~eLa~~lgvs~~tv~r~L 35 (81)
T 2htj_A 6 LEFLNRHNGGKTAEIAEALAVTDYQARYYL 35 (81)
T ss_dssp HHHHHHSCCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 334444567999999999999999998864
No 130
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=92.37 E-value=0.17 Score=31.23 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHh
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLI 105 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~l 105 (142)
+.-..|+++|+++.|+.++..|... +..+..++|.++-.++|+....+|..+
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~~~------------------------vs~~t~~rV~~~a~~lgY~pn~~a~~l 62 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNPDK------------------------VSQATRNRVEKAAREVGYLPQPMGRNV 62 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCCCC------------------------SCHHHHHHHHHHHHHHCCCC-------
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCC------------------------CCHHHHHHHHHHHHHhCCCccHHHHHh
Confidence 3566899999999999999877542 234456667666666677666555543
No 131
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=92.36 E-value=0.21 Score=39.32 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+..++..+....++||.+||+.+|||+.||++...
T Consensus 8 ~~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~ 43 (315)
T 2w48_A 8 RLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLK 43 (315)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455677888888999999999999999999998764
No 132
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=92.34 E-value=0.46 Score=32.80 Aligned_cols=77 Identities=10% Similarity=0.109 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCChhHHHhhhc-----CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHH-hCCCCHHHHHH
Q 032366 30 KVVNAARRAGADIETVRKSHA-----GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARN-DKKLTQSQLAQ 103 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~-----g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~-~~glTQ~eLA~ 103 (142)
+.-..|+..|++..|+.+|-. |...+... .+. .+..+..++...|..+.. ...+|..+++.
T Consensus 50 s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r-~gr------------~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~ 116 (149)
T 1k78_A 50 RPCDISRQLRVSHGCVSKILGRYYETGSIKPGVI-GGS------------KPKVATPKVVEKIAEYKRQNPTMFAWEIRD 116 (149)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCC-CCC------------CCSSSCHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCC-CCC------------CCCCCCHHHHHHHHHHHHhCcchhHHHHHH
Confidence 345578999999999999865 32211000 000 011233445555666544 45799999999
Q ss_pred Hh--------C--CCHHHHHHHHcCC
Q 032366 104 LI--------N--EKPQVIQEYESGK 119 (142)
Q Consensus 104 ~l--------g--is~stIs~~E~G~ 119 (142)
.+ | +|.+||.+|....
T Consensus 117 ~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 117 RLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp HHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred HHHHhcccccCCCcCHHHHHHHHHHH
Confidence 88 7 8999999998643
No 133
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=92.32 E-value=0.14 Score=34.19 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc-CCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES-GKA 120 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~-G~~ 120 (142)
++|..++|+.+|||..||..||. |--
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gll 27 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGLL 27 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCCC
Confidence 47899999999999999999996 543
No 134
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=92.28 E-value=0.72 Score=28.15 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=35.6
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc----CCCCCCHHHHHHHHHHhCCCC
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYES----GKAIPNQQILTKLERALGVKL 138 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~----G~~~p~~~~l~kLa~~Lgvsl 138 (142)
..|+|.+++|+.+|+|.++|..+.. --...+...+..++..+|+..
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~~~~~~g~~~ 78 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALAGGFGP 78 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTCCC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 6899999999999999999987764 123456666777777777653
No 135
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=92.27 E-value=0.025 Score=44.14 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVKL 138 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~~---l~kLa~~Lgvsl 138 (142)
+..|.+|+|+++|||.+|||+..||....+.++ +.+.++.||..+
T Consensus 5 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~p 52 (333)
T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVP 52 (333)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 347899999999999999999999876555544 555566666654
No 136
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=92.23 E-value=0.69 Score=30.30 Aligned_cols=74 Identities=11% Similarity=0.105 Sum_probs=45.4
Q ss_pred HHHHHHHcCCChhHHHhhhc-----CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHH-hCCCCHHHHHHH
Q 032366 31 VVNAARRAGADIETVRKSHA-----GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARN-DKKLTQSQLAQL 104 (142)
Q Consensus 31 ~~~~a~r~G~~v~t~kk~~~-----g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~-~~glTQ~eLA~~ 104 (142)
.-..|++.|++..|+.+|-. |...+.+. .+.... .+..++...|..+.. ...+|..+++..
T Consensus 36 ~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~-~g~~~~------------~l~~~~~~~i~~~~~~~~~~s~~~i~~~ 102 (128)
T 1pdn_C 36 PCVISRQLRVSHGCVSKILNRYQETGSIRPGVI-GGSKPR------------IATPEIENRIEEYKRSSPGMFSWEIREK 102 (128)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCC-SCCCCC------------SSCSTHHHHHHHTTTTCTTCCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhhCCcccccC-CCCCCC------------cCCHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 34579999999999999865 32221100 000111 122223445555543 357999999999
Q ss_pred h---C-------CCHHHHHHHHc
Q 032366 105 I---N-------EKPQVIQEYES 117 (142)
Q Consensus 105 l---g-------is~stIs~~E~ 117 (142)
+ | +|.+||.+|..
T Consensus 103 l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 103 LIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp HHHTSSSCSTTCCCHHHHHHHC-
T ss_pred HHHcCCccccCCcCHHHHHHHHH
Confidence 9 7 59999999865
No 137
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=92.16 E-value=0.35 Score=31.30 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=27.2
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
+...-.+.|..+. .|+|.+|+|+.+|+|..||..+..
T Consensus 30 Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 30 LTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp CCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3333334444433 899999999999999999988764
No 138
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=92.16 E-value=0.027 Score=44.29 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCC
Q 032366 96 LTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVKL 138 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~G~~~p~~~~---l~kLa~~Lgvsl 138 (142)
.|.+|+|+++|||.+|||+..||....+.++ +.+.++.||..+
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~aa~~lgY~p 54 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRA 54 (348)
T ss_dssp ----------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 5899999999999999999999976555544 455566677544
No 139
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=92.12 E-value=0.28 Score=31.28 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=26.1
Q ss_pred HHHHHHHh----CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 86 AIVQARND----KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 86 ~Lk~~R~~----~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+-.+|-- .|+|..++|+.+|+|.++|..+..
T Consensus 25 ~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 25 MVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp HHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34445554 799999999999999999999874
No 140
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=92.09 E-value=0.1 Score=32.13 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=19.5
Q ss_pred HHHHHHcCCChhHHHhhhcCCC
Q 032366 32 VNAARRAGADIETVRKSHAGTN 53 (142)
Q Consensus 32 ~~~a~r~G~~v~t~kk~~~g~~ 53 (142)
-+.|+++|++..|+.++..|..
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4579999999999999998865
No 141
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=92.09 E-value=0.027 Score=44.19 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHH---HHHHHHHHhCCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKAIPNQQ---ILTKLERALGVKL 138 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~---~l~kLa~~Lgvsl 138 (142)
+-.|.+|+|+++|||.+|||+..||....+.+ .+.+.++.||..+
T Consensus 11 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~p 58 (355)
T 3e3m_A 11 RPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNYVP 58 (355)
T ss_dssp ------------------------------------------------
T ss_pred CCCcHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 44789999999999999999999988655554 4555666676654
No 142
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=92.03 E-value=0.15 Score=33.47 Aligned_cols=32 Identities=9% Similarity=-0.056 Sum_probs=26.0
Q ss_pred HHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARN--DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~--~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|+.+.. ..|++|++||+.++++.++|+++.
T Consensus 24 ~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iL 57 (91)
T 2dk5_A 24 LVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKIL 57 (91)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 34555555 569999999999999999998865
No 143
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=91.98 E-value=0.28 Score=33.61 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHH-HhCCCHHHHHHHHcCC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQ-LINEKPQVIQEYESGK 119 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~-~lgis~stIs~~E~G~ 119 (142)
-...+...|+++....+++|+-||+ .+|.++.+|+++.+--
T Consensus 28 DTk~I~~~ikewL~~~~isQ~~FA~~ILgrsQgtlSdlL~~P 69 (111)
T 1wh8_A 28 DTYSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRP 69 (111)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHhccCcCcHHHHHcCC
Confidence 4567999999999999999999999 7899999999999754
No 144
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=91.94 E-value=0.75 Score=32.15 Aligned_cols=79 Identities=8% Similarity=0.002 Sum_probs=46.8
Q ss_pred HHHHHHHcCCChhHHHhhhcCCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHH-hCCCCHHHHHHHh----
Q 032366 31 VVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARN-DKKLTQSQLAQLI---- 105 (142)
Q Consensus 31 ~~~~a~r~G~~v~t~kk~~~g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~-~~glTQ~eLA~~l---- 105 (142)
.-..|+..|++..|+.+|-.-.... +...+.. + .--.+..+...+...|..+.. ...+|..+|+..+
T Consensus 44 ~~~IA~~lgis~~TV~rwl~r~~~~--G~~~~~~----r--~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~ 115 (159)
T 2k27_A 44 PCDISRQLRVSHGCVSKILGRYYET--GSIRPGV----I--GGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEG 115 (159)
T ss_dssp HHHHHHHHTCCSHHHHHHHCCSSTT--SCCCCCC----C--CCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhc--CCccCCC----C--CCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhc
Confidence 3457889999999999997643221 0000000 0 000011222334455555544 4679999999987
Q ss_pred ------CCCHHHHHHHHc
Q 032366 106 ------NEKPQVIQEYES 117 (142)
Q Consensus 106 ------gis~stIs~~E~ 117 (142)
.+|.+||.+|..
T Consensus 116 ~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 116 VCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CSCTTTSCCHHHHHHHHH
T ss_pred ccccCCccCHHHHHHHHH
Confidence 489999998875
No 145
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=91.75 E-value=0.51 Score=28.39 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=22.8
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..|+|..++|+.+|+|.++|..+..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 6899999999999999999988764
No 146
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=91.73 E-value=0.032 Score=43.29 Aligned_cols=43 Identities=7% Similarity=0.042 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCC
Q 032366 96 LTQSQLAQLINEKPQVIQEYESGKAIPNQQI---LTKLERALGVKL 138 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~G~~~p~~~~---l~kLa~~Lgvsl 138 (142)
.|.+|+|+++|||.+|||+..||....+.++ +.+.++.||..+
T Consensus 3 ~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~~~~lgY~p 48 (330)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNTGYVSEDAREKIQKVVDELNYTP 48 (330)
T ss_dssp ----------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 5889999999999999999999976555544 455566677554
No 147
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=91.73 E-value=0.32 Score=31.32 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+.|.+.....+.++.+.|+.+||+++|+.+..+
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4557788888999999999999999999988765
No 148
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=91.70 E-value=0.064 Score=32.84 Aligned_cols=29 Identities=7% Similarity=-0.013 Sum_probs=24.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGKAIPN 123 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~~~p~ 123 (142)
=++..|+|+.+|+|++||.+|.+....|.
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g~fP~ 38 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPK 38 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCCCCC
Confidence 36889999999999999999997544443
No 149
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=91.61 E-value=0.033 Score=43.66 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHH---HHHHHHHHhCCCC
Q 032366 96 LTQSQLAQLINEKPQVIQEYESGKAIPNQQ---ILTKLERALGVKL 138 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~G~~~p~~~---~l~kLa~~Lgvsl 138 (142)
.|.+|+|+++|||.+|||+..||....+.+ .+.+.++.||..+
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~~~vs~~tr~rV~~~a~~lgY~p 49 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIP 49 (349)
T ss_dssp ----------------------------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCc
Confidence 689999999999999999999987655544 4555566677544
No 150
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=91.60 E-value=0.14 Score=33.68 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHc
Q 032366 96 LTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~ 117 (142)
.|..++|..+|||++||.+|.+
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH
Confidence 7899999999999999999965
No 151
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=91.33 E-value=0.11 Score=32.88 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.-+|..|+|+.+|||.+||..||.
T Consensus 4 m~~~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 4 MTLRIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp CCEEHHHHHHTTSTTHHHHHHHHH
T ss_pred CcccHHHHHHHHCcCHHHHHHHHH
Confidence 347889999999999999999997
No 152
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=91.19 E-value=0.22 Score=32.36 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...+|-.+....|+|-.+||+.+|+|+++|.+..
T Consensus 18 ~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 18 IVCEAIKTIGIEGATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4444545544788999999999999999988754
No 153
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=91.18 E-value=0.41 Score=32.27 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHH-HhCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCCCC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQ-LINEKPQVIQEYESGKAIP------NQQILTKLERALGVKL 138 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~-~lgis~stIs~~E~G~~~p------~~~~l~kLa~~Lgvsl 138 (142)
...+...|++..+..+++|.-||+ .+|.++.+++++.+.-..| ..+...++-..|..+-
T Consensus 19 Tk~I~~~Ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lLr~P~kPW~~L~~Gre~f~RM~nWL~l~e 84 (101)
T 1wiz_A 19 SPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQSLLVNLRAMQNFLNLPE 84 (101)
T ss_dssp CTTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCCCTTTCCHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCCH
Confidence 456899999999999999999999 5799999999999865312 2456667777776653
No 154
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.10 E-value=0.37 Score=31.25 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
+...-.+.|.. + ..|+|.+|+|+.+|+|..||..+..
T Consensus 28 Lt~~e~~vl~l-~-~~g~s~~eIA~~l~is~~tV~~~l~ 64 (95)
T 3c57_A 28 LTDQERTLLGL-L-SEGLTNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp CCHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 33333333443 4 7899999999999999999988753
No 155
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=91.01 E-value=0.39 Score=30.27 Aligned_cols=43 Identities=5% Similarity=-0.011 Sum_probs=29.8
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALG 135 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~G----~~~p~~~~l~kLa~~Lg 135 (142)
..|+|.+|+|+.+|+|.+||..+... -...+...+..++...|
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~g 80 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQER 80 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 68999999999999999999877641 12234444444444444
No 156
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=90.87 E-value=0.41 Score=29.24 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=23.1
Q ss_pred HHHHHh-CCCCHHHHHHHhCCCHHHHHHHH
Q 032366 88 VQARND-KKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 88 k~~R~~-~glTQ~eLA~~lgis~stIs~~E 116 (142)
..+... ..+|..+||+.+|+|+++|.+..
T Consensus 17 ~~L~~~~~~~s~~eLA~~lglsr~tv~~~l 46 (67)
T 2heo_A 17 QVLSDDGGPVAIFQLVKKCQVPKKTLNQVL 46 (67)
T ss_dssp HHHHHHCSCEEHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 334333 46999999999999999998865
No 157
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=90.65 E-value=0.44 Score=32.22 Aligned_cols=32 Identities=6% Similarity=0.083 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+-.++-..|+|..++|+.+|+|.+||..+..
T Consensus 29 ~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 29 NYIELYYADDYSLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34445556899999999999999999998764
No 158
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=90.65 E-value=0.37 Score=30.79 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARN-DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~-~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+.. ..++|+.+||+.+|+|+++|+++.
T Consensus 25 ~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l 57 (109)
T 2d1h_A 25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSL 57 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34444443 678999999999999999999864
No 159
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=90.47 E-value=0.48 Score=35.37 Aligned_cols=39 Identities=15% Similarity=0.006 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 81 SELKKAIVQARND-KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 81 ~~~g~~Lk~~R~~-~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
-+.|.....+... ...+|++||+.+|||++.|+++.+--
T Consensus 27 yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 27 YERGQRYASRLQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp HHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 3456555555544 46899999999999999999998643
No 160
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=90.36 E-value=0.29 Score=31.68 Aligned_cols=33 Identities=9% Similarity=0.084 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|.......+.++.+.|+.+|||++|+.+..
T Consensus 53 ~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rkl 85 (91)
T 1ntc_A 53 RTLLTTALRHTQGHKQEAARLLGWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHH
Confidence 455677788889999999999999999998764
No 161
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=90.12 E-value=0.27 Score=31.35 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+.+.+..++....++..|||+.+++|..||.+-.
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL 37 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAML 37 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 4455666777788999999999999999998743
No 162
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=90.00 E-value=0.44 Score=31.63 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH-HhCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCCCC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQ-LINEKPQVIQEYESGKAIP------NQQILTKLERALGVKL 138 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~-~lgis~stIs~~E~G~~~p------~~~~l~kLa~~Lgvsl 138 (142)
..+...|++..+..++||.-||+ .+|.++.+++.+.+.-..| ..+...++-..|..+.
T Consensus 10 ~~I~~~ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lL~~Pkdpw~~l~~Gre~f~rM~nWL~l~e 74 (93)
T 2o4a_A 10 SEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPE 74 (93)
T ss_dssp TTHHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhhHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhCCCH
Confidence 45888999999999999999999 6799999999999855422 2445667777776653
No 163
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=89.71 E-value=0.79 Score=29.11 Aligned_cols=33 Identities=6% Similarity=0.080 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|..+....++|+.+||+.+|+++++|++..
T Consensus 23 ~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l 55 (109)
T 1sfx_A 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRL 55 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 344555556678999999999999999999875
No 164
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=89.60 E-value=0.55 Score=31.62 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+-.++-..|+|..|+|+.+|+|.++|..+..
T Consensus 31 r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 31 RNYLELFYLEDYSLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334455667899999999999999999987653
No 165
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=89.47 E-value=0.59 Score=31.44 Aligned_cols=31 Identities=10% Similarity=0.122 Sum_probs=25.6
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYESGKAIPN 123 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~G~~~p~ 123 (142)
-..+|..+||+.+|+|++||.++.+--..-.
T Consensus 37 ~~~~si~elA~~~~vS~aTv~Rf~kklG~~g 67 (111)
T 2o3f_A 37 AIESTVNEISALANSSDAAVIRLCXSLGLKG 67 (111)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHTTCSS
T ss_pred HHhcCHHHHHHHHCCCHHHHHHHHHHcCCCC
Confidence 3589999999999999999999997443333
No 166
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=88.99 E-value=0.54 Score=30.94 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 24 sq~~lA~~~gis~~~i~~~e~g~~~ 48 (114)
T 3op9_A 24 KNHQIAELLNVQTRTVAYYMSGETK 48 (114)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4556899999999999999999765
No 167
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=88.93 E-value=0.56 Score=31.79 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKK--LTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~g--lTQ~eLA~~lgis~stIs~~E 116 (142)
...|..+....+ +|+.+||+.+|++++||++..
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L 63 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSV 63 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 345556666666 999999999999999999864
No 168
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=88.82 E-value=0.43 Score=31.78 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~ 117 (142)
-+|..++|+.+|||+.||..||+
T Consensus 2 ~~~i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHH
T ss_pred CccHHHHHHHHCcCHHHHHHHHH
Confidence 37889999999999999999986
No 169
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=88.76 E-value=0.9 Score=32.44 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHh-CCCHHHHHHHHcC
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLI-NEKPQVIQEYESG 118 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~l-gis~stIs~~E~G 118 (142)
...+...|+..+...+++|..||+.+ |+++.+++.+.+.
T Consensus 6 t~~i~~~i~~~l~~~~i~q~~fa~~ilg~sq~~ls~~l~~ 45 (164)
T 2d5v_A 6 TKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRN 45 (164)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHhcCCchhHHHHcCC
Confidence 45689999999999999999999965 9999999999964
No 170
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=88.49 E-value=0.82 Score=30.29 Aligned_cols=34 Identities=6% Similarity=-0.028 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
...|.......+.++.+.|+.+|||++++.+..+
T Consensus 60 r~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 60 QPLLDMVMQYTLGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3556777888899999999999999999987654
No 171
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=88.48 E-value=0.88 Score=30.92 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=24.0
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 91 RNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 91 R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
+.-.|+|..|+|+.+|+|.++|.....
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ 146 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQ 146 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 466899999999999999999988764
No 172
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=88.35 E-value=0.66 Score=27.75 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
...|....... .++.+.|+.+|||++|+.+..+
T Consensus 23 r~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 23 AQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHH
Confidence 45566666667 6899999999999999988765
No 173
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=87.98 E-value=0.54 Score=31.55 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=28.1
Q ss_pred HHHHHH-HHHHhCCCCHHHHHHHhCCCHHHHHHHHcC
Q 032366 83 LKKAIV-QARNDKKLTQSQLAQLINEKPQVIQEYESG 118 (142)
Q Consensus 83 ~g~~Lk-~~R~~~glTQ~eLA~~lgis~stIs~~E~G 118 (142)
+++.|- ....-..+|..+||+.+|+|++||.++.+-
T Consensus 22 ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kk 58 (107)
T 3iwf_A 22 IAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKK 58 (107)
T ss_dssp HHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
Confidence 444443 334557899999999999999999999873
No 174
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=87.91 E-value=0.37 Score=29.75 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 27 tq~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 27 SYESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 3557899999999999999999876
No 175
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=87.86 E-value=0.85 Score=30.18 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.++|..|+|+.+|+|.++|..++.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 689999999999999999999875
No 176
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=87.85 E-value=0.4 Score=30.43 Aligned_cols=29 Identities=3% Similarity=0.023 Sum_probs=22.9
Q ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 88 VQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 88 k~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..+....++|..+||+.+|+|+++|++..
T Consensus 31 ~~l~~~~~~s~~ela~~l~is~~tvs~~l 59 (99)
T 3cuo_A 31 CMLSGSPGTSAGELTRITGLSASATSQHL 59 (99)
T ss_dssp HHHTTCCSEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 33333347999999999999999998864
No 177
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=87.71 E-value=0.76 Score=29.32 Aligned_cols=29 Identities=0% Similarity=0.076 Sum_probs=22.2
Q ss_pred HHHHHHhC-CCCHHHHHHHhCCCHHH-HHHH
Q 032366 87 IVQARNDK-KLTQSQLAQLINEKPQV-IQEY 115 (142)
Q Consensus 87 Lk~~R~~~-glTQ~eLA~~lgis~st-Is~~ 115 (142)
|..+...- ++|+.+||+.+|+++++ +++.
T Consensus 21 L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~ 51 (95)
T 2pg4_A 21 LLEFEKKGYEPSLAEIVKASGVSEKTFFMGL 51 (95)
T ss_dssp HHHHHHTTCCCCHHHHHHHHCCCHHHHHTTH
T ss_pred HHHHHhcCCCCCHHHHHHHHCCCchHHHHHH
Confidence 34444444 79999999999999999 5554
No 178
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=87.68 E-value=0.31 Score=29.84 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+||.|...
T Consensus 26 tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 26 TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 4566899999999999999999876
No 179
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=87.37 E-value=0.56 Score=32.96 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc-CCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES-GKA 120 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~-G~~ 120 (142)
.+|..++|+.+|||+.||.-||. |--
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~~GLl 28 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERIGLI 28 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHTSS
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHCCCC
Confidence 47899999999999999999996 443
No 180
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=87.34 E-value=1.1 Score=29.67 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...-...|..+...-++|+.+||+.+|+++++|++..
T Consensus 28 ~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l 64 (138)
T 3bpv_A 28 TDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTL 64 (138)
T ss_dssp CHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3334445666666678999999999999999998764
No 181
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=87.29 E-value=1.3 Score=30.46 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+.....+|..+||+.+|+|++++.+..
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 40 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERV 40 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34556666678999999999999999988754
No 182
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=87.07 E-value=1.3 Score=30.65 Aligned_cols=32 Identities=19% Similarity=0.098 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+...-.+|..+||+.+|+|++++++..
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVSAVQSRV 42 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 44566666677999999999999999998754
No 183
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=87.06 E-value=1 Score=30.34 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+...-...|..+...-++|+.+||+.+++++++++++.
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l 72 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIV 72 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHH
Confidence 33344455666666689999999999999999999864
No 184
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=86.96 E-value=0.7 Score=29.45 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=22.6
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..|+|.+|+|+.+|+|.+||..+..
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~ 66 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVS 66 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 6899999999999999999988764
No 185
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=86.86 E-value=1.2 Score=30.00 Aligned_cols=38 Identities=3% Similarity=0.045 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+...-...|..+...-++|+.+||+.+|++++++++..
T Consensus 38 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 75 (148)
T 3nrv_A 38 IGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTV 75 (148)
T ss_dssp CCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 33334455666666679999999999999999998864
No 186
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=86.85 E-value=0.88 Score=30.68 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...-...|..+...-++|+.+||+.+|+++++++++.
T Consensus 36 t~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 72 (142)
T 3ech_A 36 TPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKI 72 (142)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHH
T ss_pred CHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 3334455666666679999999999999999988764
No 187
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=86.73 E-value=1.4 Score=29.28 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.+|+++++|++..
T Consensus 33 ~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l 66 (142)
T 3bdd_A 33 RYSILQTLLKDAPLHQLALQERLQIDRAAVTRHL 66 (142)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3445566666678999999999999999998764
No 188
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=86.72 E-value=2.6 Score=29.41 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=37.6
Q ss_pred HHHHHcCCChhHHHhhhc-CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhC
Q 032366 33 NAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLIN 106 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lg 106 (142)
+.|++.|+++.|++-|+. |-..|.... .-.-+.++.+ ....-..|+.+| ..|+|..++.+.+.
T Consensus 7 e~A~~~gvs~~tLR~Ye~~GLl~p~~r~-~~g~R~Y~~~---------dl~~l~~I~~lr-~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 7 EASEKSGVSADTIRYYERIGLIPPIHRN-ESGVRKFGAE---------DLRWILFTRQMR-RAGLSIEALIDYLA 70 (142)
T ss_dssp HHHHHHTSCHHHHHHHHHHTSSCCCCBC-TTSCBCBCHH---------HHHHHHHHHHHH-HTTCCHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCcCC-CCCCeeeCHH---------HHHHHHHHHHHH-HcCCCHHHHHHHHH
Confidence 478999999999999998 544431111 0011111111 112344566665 67999999987664
No 189
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=86.71 E-value=0.58 Score=29.61 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=24.2
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
|..+....++|..+||+.+|+++++|++..
T Consensus 22 L~~L~~~~~~~~~ela~~l~is~~tvs~~l 51 (100)
T 1ub9_A 22 MIFLLPRRKAPFSQIQKVLDLTPGNLDSHI 51 (100)
T ss_dssp HHHHHHHSEEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHhcCCcCHHHHHHHHCcCHHHHHHHH
Confidence 444445567999999999999999998754
No 190
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=86.69 E-value=1.4 Score=29.23 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+...-...|..+...-++|+.+||+.+|++++++++..
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 73 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVV 73 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 33334445566656668999999999999999998874
No 191
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=86.65 E-value=0.91 Score=32.94 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+-.++--.|+|..|+|+.+|+|.++|..+..
T Consensus 194 ~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 194 LVIQLIFYEELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp HHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34445556799999999999999999998763
No 192
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=86.64 E-value=0.34 Score=31.69 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+.+.+..++..-.++..|||+.+++|..||.+..
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 3444566677778999999999999999987643
No 193
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=86.63 E-value=1.6 Score=30.65 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+.....+|..+||+.+|+|++++++..
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 45 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRRL 45 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 44566666677999999999999999988754
No 194
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=86.54 E-value=1.5 Score=29.69 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.3
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 91 RNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 91 R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
....++|+.+||+.+|+++++|++..
T Consensus 18 ~~~~~~~~~ela~~l~vs~~tvs~~l 43 (142)
T 1on2_A 18 EEKGYARVSDIAEALAVHPSSVTKMV 43 (142)
T ss_dssp HHHSSCCHHHHHHHHTSCHHHHHHHH
T ss_pred hhcCCCCHHHHHHHhCCCHHHHHHHH
Confidence 34578999999999999999988754
No 195
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=86.51 E-value=1.4 Score=30.43 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+.....+|..+||+.+|+|++++.+..
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 43 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVRV 43 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 44566667778999999999999999988754
No 196
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=86.44 E-value=1.5 Score=29.57 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+...-...|..+...-++|+.+||+.+|+++++++++.
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 66 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVC 66 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 34444556666766778999999999999999998874
No 197
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=86.44 E-value=1.6 Score=31.96 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCC
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAI 121 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~ 121 (142)
+.|.++. ..|+|..++|+.+|+|++||.++.+....
T Consensus 166 ~~i~~~~-~~G~s~~~Ia~~l~is~~tv~r~l~~~~~ 201 (209)
T 2r0q_C 166 HRVVEML-EEGQAISKIAKEVNITRQTVYRIKHDNGL 201 (209)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHTTCC-
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHhcccc
Confidence 3444444 36999999999999999999999876543
No 198
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=86.31 E-value=1 Score=31.16 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+.....+|..+||+.+|+|++++.+..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 44 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARRI 44 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34556666778999999999999999988754
No 199
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=86.26 E-value=1.3 Score=25.85 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=23.3
Q ss_pred HHhCCCCHHHHHHHh-----CCCHHHHHHHHc
Q 032366 91 RNDKKLTQSQLAQLI-----NEKPQVIQEYES 117 (142)
Q Consensus 91 R~~~glTQ~eLA~~l-----gis~stIs~~E~ 117 (142)
.....+|..+|++.+ +||.+||++..+
T Consensus 15 ~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 15 TSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 445679999999999 999999998765
No 200
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=86.14 E-value=0.85 Score=31.64 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHc
Q 032366 96 LTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~ 117 (142)
||..++|+.+|||..||..||+
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~ 22 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEE 22 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 5788999999999999999997
No 201
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=86.12 E-value=1.7 Score=28.60 Aligned_cols=57 Identities=11% Similarity=0.174 Sum_probs=37.2
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhCC
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALGV 136 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G----~~~p~~~~l~kLa~~Lgv 136 (142)
.+.+.-.+.|..+ ..|+|.+|+|+.+|+|..||..+... -...+...+..++...|+
T Consensus 34 ~Lt~re~~Vl~l~--~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv~~a~~~gl 94 (99)
T 1p4w_A 34 RLSPKESEVLRLF--AEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM 94 (99)
T ss_dssp SCCHHHHHHHHHH--HHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence 4444444444332 36999999999999999999887642 123345555566655554
No 202
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=86.04 E-value=2.3 Score=29.89 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=37.4
Q ss_pred HHHHHcCCChhHHHhhhc-CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhCC
Q 032366 33 NAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINE 107 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgi 107 (142)
+.|++.|+++.|++-|+. |-..|..... -.-+.++.+ ....-..|+.+| ..|+|..++...+..
T Consensus 9 evA~~~Gvs~~tLR~ye~~GLl~p~~r~~-~g~R~Y~~~---------dl~~l~~I~~lr-~~G~sl~~I~~~l~~ 73 (146)
T 3hh0_A 9 EFASVGDVTVRALRYYDKINLLKPSDYTE-GGHRLYTKD---------DLYVLQQIQSFK-HLGFSLGEIQNIILQ 73 (146)
T ss_dssp HHHHHHTCCHHHHHHHHHTTSSCCSEECT-TSCEEBCHH---------HHHHHHHHHHHH-HTTCCHHHHHHHHTS
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCeECC-CCCEeeCHH---------HHHHHHHHHHHH-HcCCCHHHHHHHHHc
Confidence 579999999999999997 4444321100 011111111 111233455554 579999998887764
No 203
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=86.00 E-value=1.6 Score=29.00 Aligned_cols=36 Identities=14% Similarity=0.042 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHhCCCHHHHHHHH
Q 032366 81 SELKKAIVQARNDK--KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~--glTQ~eLA~~lgis~stIs~~E 116 (142)
..-...|..+...- ++|+.+||+.+|+++++|++..
T Consensus 34 ~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l 71 (141)
T 3bro_A 34 GTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLL 71 (141)
T ss_dssp HHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHH
Confidence 33444556665555 7999999999999999988764
No 204
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=85.98 E-value=0.59 Score=33.29 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHH-HhCCCHHHHHHHHcCCCC------CCHHHHHHHHHHhCCC
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQ-LINEKPQVIQEYESGKAI------PNQQILTKLERALGVK 137 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~-~lgis~stIs~~E~G~~~------p~~~~l~kLa~~Lgvs 137 (142)
.+..++.+.|++..+..+++|.-||+ .+|.++.+++++.+--.. ...+...++-..|..+
T Consensus 21 ~vt~~I~~~Ik~eLk~~~IsQ~~FA~~VL~rsQGtLS~LLr~PkdPW~~LksGRE~fiRM~NWL~Lp 87 (141)
T 1yse_A 21 EVSSEIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLP 87 (141)
T ss_dssp SCCTHHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHHHCCCGGGCCHHHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHcCCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 56678999999999999999999999 558999999999875442 1234455555555443
No 205
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=85.87 E-value=1.1 Score=31.55 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+-.++.-.|+|.+|+|+.+|+|.++|.....
T Consensus 147 ~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ 178 (194)
T 1or7_A 147 MAITLRELDGLSYEEIAAIMDCPVGTVRSRIF 178 (194)
T ss_dssp HHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34445666899999999999999999998764
No 206
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=85.79 E-value=1.4 Score=29.58 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=27.6
Q ss_pred HHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARN-DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~-~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+.. ..++|+.+||+.+|+++++|++..
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l 71 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALL 71 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHH
Confidence 3455666666 678999999999999999988764
No 207
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=85.75 E-value=0.89 Score=32.08 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+|..|+|+.+|||.+||..||.
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~ 26 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDK 26 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHH
Confidence 358999999999999999999997
No 208
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=85.74 E-value=0.43 Score=28.75 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+|+.|...
T Consensus 23 sq~~lA~~~gis~~~is~~e~g~~~ 47 (73)
T 3omt_A 23 TNLWLTETLDKNKTTVSKWCTNDVQ 47 (73)
T ss_dssp CHHHHHHHTTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4567899999999999999999865
No 209
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=85.73 E-value=1.6 Score=31.38 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=19.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 032366 96 LTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E 116 (142)
+||.+||..+|+|+.+|++..
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l 184 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTAL 184 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHH
Confidence 899999999999999999765
No 210
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=85.56 E-value=1.7 Score=29.30 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..-...|..+...-++|+.+||+.+|+++++|++..
T Consensus 42 ~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l 77 (150)
T 2rdp_A 42 PPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLV 77 (150)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHH
Confidence 333445566666678999999999999999998864
No 211
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=85.54 E-value=1.9 Score=27.49 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.6
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...++..+||+.+|+|+++|++..
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L 64 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHL 64 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 567999999999999999999854
No 212
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=85.53 E-value=1.3 Score=28.88 Aligned_cols=24 Identities=4% Similarity=0.047 Sum_probs=21.5
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..++|..+||+.+|+|+++|++..
T Consensus 37 ~~~~~~~ela~~l~is~stvs~~L 60 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQL 60 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHH
Confidence 567999999999999999998854
No 213
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=85.45 E-value=1.2 Score=30.72 Aligned_cols=31 Identities=10% Similarity=0.049 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
.|..+.....+|..+||+.+|+|++++++..
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 38 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYRI 38 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3455555567999999999999999988754
No 214
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=85.41 E-value=1.5 Score=31.49 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESG 118 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G 118 (142)
.|.++. ..|+|..++|+.+|+|++||.+|.+.
T Consensus 150 ~i~~~~-~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 150 AVLNMW-QQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 344444 46999999999999999999998764
No 215
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=85.40 E-value=0.48 Score=27.49 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|++.|++.+|+.+|+.|...
T Consensus 16 s~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 16 SQSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3456899999999999999999765
No 216
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=85.37 E-value=0.64 Score=32.94 Aligned_cols=23 Identities=9% Similarity=0.309 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+||.+||..+|+++.+|+++.+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~ 186 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLK 186 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHH
Confidence 48999999999999999998754
No 217
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=85.30 E-value=1.3 Score=28.48 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
..++..+||+.+|+|+.+++++-+..
T Consensus 18 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 37999999999999999999988643
No 218
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=85.28 E-value=0.86 Score=29.17 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=19.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 032366 96 LTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E 116 (142)
+|+.+||+.+++++++++++.
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l 51 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLII 51 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHH
Confidence 999999999999999988864
No 219
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=85.23 E-value=1.9 Score=29.54 Aligned_cols=33 Identities=6% Similarity=-0.078 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|..+...-++|+.+||+.+|+++++|+++.
T Consensus 52 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 84 (162)
T 2fa5_A 52 WRVITILALYPGSSASEVSDRTAMDKVAVSRAV 84 (162)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 344555555678999999999999999988764
No 220
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=85.17 E-value=1.4 Score=29.94 Aligned_cols=30 Identities=7% Similarity=0.151 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHH
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEY 115 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~ 115 (142)
.|..+...-.+|..+||+.+|+|++++++.
T Consensus 9 il~~L~~~~~~~~~ela~~lg~s~~tv~~~ 38 (141)
T 1i1g_A 9 ILEILEKDARTPFTEIAKKLGISETAVRKR 38 (141)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHH
Confidence 345555556799999999999999999874
No 221
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.16 E-value=1.9 Score=28.78 Aligned_cols=34 Identities=6% Similarity=0.012 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.+|++++++++..
T Consensus 35 ~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l 68 (145)
T 2a61_A 35 QFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLV 68 (145)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHH
Confidence 3444555555678999999999999999998764
No 222
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=85.08 E-value=2.1 Score=25.95 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+|+.|...
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~ 49 (84)
T 2ef8_A 25 SQSELAIFLGLSQSDISKIESFERR 49 (84)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 4567899999999999999999765
No 223
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=85.00 E-value=0.52 Score=27.50 Aligned_cols=25 Identities=4% Similarity=0.101 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|++.|++..|+.+|+.|...
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 20 RQAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCCCC
Confidence 3456899999999999999999765
No 224
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=84.96 E-value=0.7 Score=32.81 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+||.+||..+|+++.+|++..+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~ 189 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILK 189 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHHHHHH
Confidence 47999999999999999998764
No 225
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=84.96 E-value=1.1 Score=29.87 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHhCCCHHHHHHHH
Q 032366 80 PSELKKAIVQARNDK--KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~--glTQ~eLA~~lgis~stIs~~E 116 (142)
...-...|..+.... ++|+.+||+.+|+++++++++.
T Consensus 30 t~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l 68 (139)
T 3eco_A 30 TNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLL 68 (139)
T ss_dssp CHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHH
Confidence 333445566665554 8999999999999999999874
No 226
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=84.93 E-value=0.96 Score=30.46 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=24.2
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
|..+.....+|..+||+.+|+|+++|++..
T Consensus 48 L~~L~~~~~~s~~eLa~~l~is~stvs~~L 77 (122)
T 1u2w_A 48 TYALCQDEELCVCDIANILGVTIANASHHL 77 (122)
T ss_dssp HHHHHHSSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 344444567999999999999999999865
No 227
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=84.91 E-value=1.6 Score=28.81 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=23.1
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
|..+.. ..+|+.++|+.+|+++++|++..
T Consensus 38 l~~L~~-~~~s~~ela~~l~is~stvsr~l 66 (119)
T 2lkp_A 38 LTQLRN-GPLPVTDLAEAIGMEQSAVSHQL 66 (119)
T ss_dssp HHHHHH-CCCCHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 334443 57999999999999999998854
No 228
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=84.87 E-value=2 Score=29.68 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+.....+|..+||+.+|+|++++++..
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHERI 42 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 44555666678999999999999999988753
No 229
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=84.81 E-value=3 Score=27.49 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHHcCCChhHHHhhhc-CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhCCC
Q 032366 33 NAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEK 108 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis 108 (142)
+.|+..|+++.|++.|+. |-..|.....+ .-..++.++ ...-..|+.+ ...|+|..++...+..+
T Consensus 7 e~A~~~gvs~~tLR~ye~~Gll~p~~~~~~-g~R~Y~~~d---------l~~l~~I~~l-~~~G~~l~~I~~~l~~~ 72 (109)
T 1r8d_A 7 QVAEISGVSIRTLHHYDNIELLNPSALTDA-GYRLYSDAD---------LERLQQILFF-KEIGFRLDEIKEMLDHP 72 (109)
T ss_dssp HHHHHHSCCHHHHHHHHHTTSSCCSEECTT-CCEEBCHHH---------HHHHHHHHHH-HHTTCCHHHHHHHHHCT
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCeECCC-CCeeeCHHH---------HHHHHHHHHH-HHCCCCHHHHHHHHhCC
Confidence 478999999999999976 44442110000 001111111 1122334544 35699999998887543
No 230
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=84.70 E-value=1.6 Score=33.28 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 82 ELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 82 ~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
.-...|..+....++|+.+||+.+|++++|+++..
T Consensus 153 ~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L 187 (244)
T 2wte_A 153 EEMKLLNVLYETKGTGITELAKMLDKSEKTLINKI 187 (244)
T ss_dssp HHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34455566666779999999999999999999874
No 231
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=84.69 E-value=1.3 Score=30.18 Aligned_cols=37 Identities=3% Similarity=0.039 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...-...|..+...-++|+.+||+.+++++++|+++.
T Consensus 40 t~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l 76 (149)
T 4hbl_A 40 TYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPML 76 (149)
T ss_dssp CHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3334455666666789999999999999999998864
No 232
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=84.67 E-value=0.74 Score=32.76 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=20.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHc
Q 032366 96 LTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~ 117 (142)
+||.+||..+|+|+.+|++..+
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~ 168 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIG 168 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 8999999999999999998753
No 233
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=84.57 E-value=2 Score=30.73 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+.....+|..+||+.+|+|++++.+..
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l 52 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKKPESTIHFRI 52 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34566666678999999999999999988753
No 234
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=84.56 E-value=3.7 Score=27.04 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=37.9
Q ss_pred HHHHHcCCChhHHHhhhc-CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhCCC
Q 032366 33 NAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEK 108 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis 108 (142)
+.|+..|+++.|++.|+. |-..|.....+ .-..++.+ ....-..|+.+| ..|+|..++...+..+
T Consensus 6 e~A~~~gvs~~tLR~ye~~Gll~p~~r~~~-g~R~Y~~~---------dl~~l~~I~~lr-~~G~sl~~I~~~l~~~ 71 (108)
T 2vz4_A 6 QVAGFAGVTVRTLHHYDDIGLLVPSERSHA-GHRRYSDA---------DLDRLQQILFYR-ELGFPLDEVAALLDDP 71 (108)
T ss_dssp HHHHHHTCCHHHHHHHHHHTSSCCSEECSS-CCEEBCHH---------HHHHHHHHHHHH-HTTCCHHHHHHHHTC-
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCC-CCeecCHH---------HHHHHHHHHHHH-HCCCCHHHHHHHHhCC
Confidence 578999999999999976 44443210000 01111111 111234455554 5799999999988754
No 235
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=84.53 E-value=0.54 Score=28.91 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+||.|...
T Consensus 26 sq~~lA~~~gis~~~i~~~e~g~~~ 50 (82)
T 3s8q_A 26 TQEDLAYKSNLDRTYISGIERNSRN 50 (82)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCC
T ss_pred CHHHHHHHhCcCHHHHHHHHCCCCC
Confidence 4567899999999999999999865
No 236
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=84.42 E-value=1.9 Score=28.86 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...-...|..+... ++|+.+||+.+|+++++|++..
T Consensus 37 t~~~~~iL~~l~~~-~~t~~eLa~~l~~s~~tvs~~l 72 (146)
T 3tgn_A 37 TNTQEHILMLLSEE-SLTNSELARRLNVSQAAVTKAI 72 (146)
T ss_dssp CHHHHHHHHHHTTC-CCCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhC-CCCHHHHHHHHCCCHHHHHHHH
Confidence 33334445555444 4999999999999999998765
No 237
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=84.33 E-value=1.1 Score=29.93 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=26.4
Q ss_pred HHHHHHHHHHH-HhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 81 SELKKAIVQAR-NDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 81 ~~~g~~Lk~~R-~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
......|.-+. ...++|+.+||+.+|++++++++..
T Consensus 26 ~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l 62 (152)
T 1ku9_A 26 KSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSL 62 (152)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 33444444443 3468999999999999999988864
No 238
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=84.28 E-value=2.1 Score=28.75 Aligned_cols=24 Identities=13% Similarity=0.129 Sum_probs=21.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..++|+.+||+.+|+++++|++..
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l 52 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEV 52 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCChHHHHHHH
Confidence 457899999999999999998754
No 239
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=84.21 E-value=0.6 Score=27.80 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|++.|++.+++.+|+.|...
T Consensus 28 s~~~lA~~~gis~~~i~~~e~g~~~ 52 (74)
T 1y7y_A 28 SQETLAFLSGLDRSYVGGVERGQRN 52 (74)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4566899999999999999999865
No 240
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=84.19 E-value=1.5 Score=31.85 Aligned_cols=35 Identities=9% Similarity=-0.048 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCC--CCHHHHHHHhCCCHHHHHHHH
Q 032366 82 ELKKAIVQARNDKK--LTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 82 ~~g~~Lk~~R~~~g--lTQ~eLA~~lgis~stIs~~E 116 (142)
.+-+.|.+...+.| .|+.|||+.+|++.+++.++.
T Consensus 9 ~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 9 KVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 45566666655555 799999999999998887754
No 241
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.15 E-value=1.5 Score=29.19 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.+|++++++++..
T Consensus 38 ~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l 71 (142)
T 2fbi_A 38 QWRVIRILRQQGEMESYQLANQACILRPSMTGVL 71 (142)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHH
Confidence 3445566666678999999999999999988764
No 242
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=84.13 E-value=1.3 Score=31.74 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E 116 (142)
..+||.+||..+|+|+.+|+++.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l 188 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLL 188 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHH
Confidence 46899999999999999999875
No 243
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=84.10 E-value=2 Score=29.29 Aligned_cols=34 Identities=6% Similarity=-0.031 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.++++++++++..
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 79 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVV 79 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3445566666668999999999999999998864
No 244
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=84.00 E-value=2.1 Score=28.32 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.+|+++++++++.
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l 69 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKKVLSVDLGALTRML 69 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHH
Confidence 3444556666678999999999999999998764
No 245
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=83.97 E-value=1.2 Score=27.88 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+|+.|...
T Consensus 32 sq~~lA~~~gis~~~is~~e~g~~~ 56 (92)
T 1lmb_3 32 SQESVADKMGMGQSGVGALFNGINA 56 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4566889999999999999999765
No 246
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=83.85 E-value=0.82 Score=32.92 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=20.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHc
Q 032366 96 LTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~ 117 (142)
+||.+||..+|+++.+|++..+
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~ 209 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLK 209 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHH
Confidence 7999999999999999998764
No 247
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=83.81 E-value=1.3 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHH-HHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQA-RNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~-R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+ ...-++|+.+||+.+|+++++++++.
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l 73 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLL 73 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHH
Confidence 345555 45678999999999999999998764
No 248
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=83.70 E-value=0.85 Score=32.60 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+||.+||..+|+++.+|+++-+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~ 191 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLR 191 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHH
Confidence 68999999999999999998763
No 249
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=83.69 E-value=1.4 Score=28.60 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=23.7
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
|..+ ....+|..+||+.+|+|+++|++..
T Consensus 27 L~~L-~~~~~~~~ela~~l~is~~tv~~~l 55 (114)
T 2oqg_A 27 LTEL-GRADQSASSLATRLPVSRQAIAKHL 55 (114)
T ss_dssp HHHH-HHSCBCHHHHHHHSSSCHHHHHHHH
T ss_pred HHHH-HcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3344 5567999999999999999998864
No 250
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=83.67 E-value=1.7 Score=29.53 Aligned_cols=34 Identities=3% Similarity=0.005 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.+++++++|+++.
T Consensus 49 ~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l 82 (153)
T 2pex_A 49 QYLVMLVLWETDERSVSEIGERLYLDSATLTPLL 82 (153)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHH
Confidence 3445556666678999999999999999998764
No 251
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=83.62 E-value=0.64 Score=27.95 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 25 sq~~lA~~~gis~~~i~~~e~g~~~ 49 (77)
T 2b5a_A 25 SQEELADLAGLHRTYISEVERGDRN 49 (77)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 4566899999999999999999765
No 252
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=83.56 E-value=1.7 Score=31.37 Aligned_cols=30 Identities=20% Similarity=0.191 Sum_probs=23.2
Q ss_pred HHHHHHh-CCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARND-KKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~-~glTQ~eLA~~lgis~stIs~~E 116 (142)
|..++.. ..+|..+||+.+|+|++||.+..
T Consensus 27 l~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi 57 (187)
T 1j5y_A 27 VRILERSKEPVSGAQLAEELSVSRQVIVQDI 57 (187)
T ss_dssp HHHHHHCSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 3444443 34999999999999999998754
No 253
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=83.55 E-value=1 Score=31.39 Aligned_cols=37 Identities=5% Similarity=0.021 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCC-CHHHHHHHHcC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINE-KPQVIQEYESG 118 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgi-s~stIs~~E~G 118 (142)
.++.+.|-.+. ..|.|..++|+..|| |.+||.+|.+-
T Consensus 15 ~e~~e~I~~~i-~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 15 PEVADDICSLL-SSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp TTHHHHHHHHH-HTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 34555555444 479999999999999 99999999864
No 254
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=83.52 E-value=1.6 Score=29.63 Aligned_cols=33 Identities=6% Similarity=-0.067 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|..+...-++|+.+||+.+++++++++++.
T Consensus 44 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 76 (154)
T 2qww_A 44 LAMINVIYSTPGISVADLTKRLIITGSSAAANV 76 (154)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 344555556678999999999999999988864
No 255
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=83.50 E-value=0.55 Score=28.89 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+||.|...
T Consensus 29 tq~elA~~~gis~~~is~~e~g~~~ 53 (83)
T 3f6w_A 29 TQKELAARLGRPQSFVSKTENAERR 53 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4557899999999999999999765
No 256
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=83.43 E-value=0.87 Score=32.94 Aligned_cols=24 Identities=4% Similarity=0.034 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+||.+||..+|+|+.+|+++.+
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~ 197 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLK 197 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHH
Confidence 358999999999999999999753
No 257
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=83.39 E-value=0.66 Score=27.76 Aligned_cols=25 Identities=4% Similarity=0.101 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|++.|++.+|+.+|+.|...
T Consensus 20 s~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 20 RQAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3456899999999999999999765
No 258
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=83.38 E-value=1.3 Score=30.52 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
.|..+...-++|+.+||+.+++++++++++.
T Consensus 55 vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 85 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYLKIDKGTTARAI 85 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3555555678999999999999999999864
No 259
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=83.36 E-value=1.2 Score=30.31 Aligned_cols=33 Identities=9% Similarity=0.036 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+ ...++|+.+||+.+|++++++++..
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l 72 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQGVNKAAVSRRV 72 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHH
T ss_pred HHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 34456666 7789999999999999999998764
No 260
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=83.35 E-value=1.4 Score=30.45 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 80 PSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...-...|..+...-++|+.+||+.+|+++++|+++.
T Consensus 45 t~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 81 (162)
T 3k0l_A 45 SLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKIL 81 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3334455666666678999999999999999988764
No 261
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=83.24 E-value=0.66 Score=28.77 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTN 53 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~ 53 (142)
++-..|.+.|++.+|+.+||.|..
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 345789999999999999999976
No 262
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=83.14 E-value=1.4 Score=28.45 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 89 QARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 89 ~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+.....++..+||+.+|+|++++++..+
T Consensus 35 ~l~~~~~~~~~ela~~l~is~stvs~hL~ 63 (99)
T 2zkz_A 35 ELYKHKALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp HHHHHSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 44455679999999999999999998653
No 263
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=83.10 E-value=0.9 Score=32.77 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 032366 95 KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E 116 (142)
.+||.+||..+|+|+.+|++..
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l 198 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKAL 198 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHH
Confidence 5899999999999999999865
No 264
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=83.08 E-value=0.91 Score=32.33 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc-----CC--------CCCCHHHHHHHHHHh
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES-----GK--------AIPNQQILTKLERAL 134 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~-----G~--------~~p~~~~l~kLa~~L 134 (142)
.+||.+||..+|+++.+|++.-+ |- ..++.+.|.++|..|
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a~~l 215 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVREAALLEEIAFGL 215 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHTTC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhhcc
Confidence 47999999999999999998763 21 235667777776543
No 265
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=83.06 E-value=1.8 Score=27.33 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E 116 (142)
.-.|..|||+.+|+|.+||.+..
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHH
Confidence 45689999999999999987764
No 266
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=83.00 E-value=1.7 Score=29.31 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.+|++++++++..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l 75 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAALQMKRQYISRIL 75 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 3444555555668999999999999999988764
No 267
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=82.86 E-value=3.1 Score=27.33 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=32.3
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.....+-..|-.....-++|..|+|++.+||++.|..|..
T Consensus 32 rWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 32 RWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp CCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3445565666666677789999999999999999999985
No 268
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=82.79 E-value=2.6 Score=30.14 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+.|..+.....+|..+||+.+|+|++++.+..
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl 62 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGLAESTIHERI 62 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45566666678999999999999999988743
No 269
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=82.77 E-value=8.9 Score=29.49 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=24.1
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 91 RNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 91 R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.....+|..+||+.++||.++|.++..
T Consensus 82 ~~~~~~t~~~ia~~l~vs~~tV~r~L~ 108 (345)
T 3hot_A 82 DEDDAQTQKQLAEQLEVSQQAVSNRLR 108 (345)
T ss_dssp HHCSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HhCccchHHHHHHHHCCCHHHHHHHHH
Confidence 456689999999999999999999985
No 270
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=82.75 E-value=0.61 Score=28.40 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 17 sq~~lA~~~gis~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 17 TAKSVAEEMGISRQQLCNIEQSETA 41 (77)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTCCSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3456899999999999999999764
No 271
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=82.72 E-value=0.73 Score=32.66 Aligned_cols=23 Identities=4% Similarity=0.148 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+||.+||..+|+|+.+|++..+
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~ 161 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLA 161 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHH
Confidence 38999999999999999998753
No 272
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=82.54 E-value=3.4 Score=26.65 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESG 118 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G 118 (142)
..+|..+||+.+|+|++++++.-+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4699999999999999999999864
No 273
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=82.46 E-value=0.61 Score=31.65 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNKA 55 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~~ 55 (142)
++-..|.+.|++..|+.+||.|...|
T Consensus 86 sq~~la~~~g~s~~~i~~~E~g~~~p 111 (133)
T 3o9x_A 86 TQKEASEIFGGGVNAFSRYEKGNAQP 111 (133)
T ss_dssp CHHHHHHHHCSCTTHHHHHHHTSSCC
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCC
Confidence 45678999999999999999998763
No 274
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=82.41 E-value=0.65 Score=27.53 Aligned_cols=25 Identities=8% Similarity=0.065 Sum_probs=21.4
Q ss_pred HHHHHHHHcC--CChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAG--ADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G--~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.| ++.+++.+||.|...
T Consensus 23 sq~~lA~~~g~~is~~~i~~~e~g~~~ 49 (71)
T 2ewt_A 23 SLHGVEEKSQGRWKAVVVGSYERGDRA 49 (71)
T ss_dssp CHHHHHHHTTTSSCHHHHHHHHHTCSC
T ss_pred CHHHHHHHHCCcCCHHHHHHHHCCCCC
Confidence 4456889999 999999999999765
No 275
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=82.41 E-value=3.4 Score=27.27 Aligned_cols=38 Identities=8% Similarity=0.142 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHHh------CCCCHHHHHHHhCCCHHHHHHHH
Q 032366 79 VPSELKKAIVQARND------KKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~------~glTQ~eLA~~lgis~stIs~~E 116 (142)
+.......|..+... ..+++.+||+.++++++++++..
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l 57 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVL 57 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHH
Confidence 344455555655554 56999999999999999998764
No 276
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=82.37 E-value=2 Score=34.84 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|+.++....+|+.|||+.+|+|++||+++-
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v 74 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKIT 74 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 445777888889999999999999999999874
No 277
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=82.33 E-value=1.4 Score=29.49 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+...-++|+.+||+.+++++++|++..
T Consensus 33 ~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l 64 (144)
T 1lj9_A 33 LYLVRVCENPGIIQEKIAELIKVDRTTAARAI 64 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHH
Confidence 33555555568999999999999999998864
No 278
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=82.25 E-value=0.65 Score=29.54 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|++.|++.+|+.+|+.|...
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCCC
Confidence 4566899999999999999999765
No 279
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=82.25 E-value=1.9 Score=29.59 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.+|+++++|+++.
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 87 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIFAVVEQSTLSRAL 87 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHH
Confidence 3444555666678999999999999999998864
No 280
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=82.25 E-value=2 Score=28.74 Aligned_cols=33 Identities=15% Similarity=-0.067 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+. ..++|+.+||+.+|+++++|++..
T Consensus 39 ~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l 71 (146)
T 2gxg_A 39 DFLVLRATS-DGPKTMAYLANRYFVTQSAITASV 71 (146)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHH
Confidence 334455555 778999999999999999988764
No 281
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=82.23 E-value=1.7 Score=34.83 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|+.+|....+|..|||+.+|+|++||+++-
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v 51 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIV 51 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 345677888888999999999999999999864
No 282
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=82.00 E-value=1 Score=32.81 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+||.+||..+|+++.+|+++.+
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~ 208 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLN 208 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHHH
Confidence 38999999999999999998754
No 283
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=82.00 E-value=1.6 Score=29.55 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|..+...-++|+.+||+.+|+++++|++..
T Consensus 40 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l 72 (155)
T 1s3j_A 40 LFVLASLKKHGSLKVSEIAERMEVKPSAVTLMA 72 (155)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 344555555668999999999999999998765
No 284
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=81.91 E-value=2 Score=29.94 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|..+...-++|+.+||+.+|+++++++++.
T Consensus 48 ~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l 80 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATLLGVQPSATGRMV 80 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHH
Confidence 344555555678999999999999999998864
No 285
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=81.89 E-value=3.2 Score=28.52 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=25.3
Q ss_pred HHHHHHHH-HHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQA-RNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~-R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+...|..+ ....++|+.+||+.+|+|+++|++..
T Consensus 41 ~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l 75 (155)
T 2h09_A 41 YVELISDLIREVGEARQVDMAARLGVSQPTVAKML 75 (155)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHH
Confidence 34444433 34467999999999999999998864
No 286
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=81.86 E-value=1.1 Score=33.04 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+||.+||..+|+++.+|+++.+
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~ 215 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLG 215 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHH
Confidence 468999999999999999998764
No 287
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=81.82 E-value=1.9 Score=30.41 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+.|..+.....+|..+||+.+|+|++++.+-.
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl 38 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRI 38 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34566666778999999999999999987643
No 288
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=81.80 E-value=1.4 Score=30.01 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCCCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKAI 121 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~~ 121 (142)
+-+...++-.++| .|..++|+.+|||++++.++-.++..
T Consensus 17 Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~ 58 (177)
T 3kkc_A 17 IYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYESKEV 58 (177)
T ss_dssp HHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSSTHH
T ss_pred HHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcCCHHH
Confidence 4444445555555 59999999999999999998776643
No 289
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=81.77 E-value=1.4 Score=35.17 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=26.2
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
|+.+| ...+|..|||+.+|+|++||+++-
T Consensus 26 l~~l~-~~~~sr~~la~~~gls~~tv~~~v 54 (380)
T 2hoe_A 26 LKRIM-KSPVSRVELAEELGLTKTTVGEIA 54 (380)
T ss_dssp HHHHH-HSCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHH-cCCcCHHHHHHHHCcCHHHHHHHH
Confidence 67778 888999999999999999999874
No 290
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=81.47 E-value=0.77 Score=27.50 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|++.|++..|+.+|+.|...
T Consensus 25 s~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 25 TNRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4567899999999999999999775
No 291
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=81.44 E-value=1 Score=26.27 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+|+.|...
T Consensus 16 sq~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 16 NQAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 3456899999999999999999775
No 292
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=81.29 E-value=0.85 Score=32.76 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+||.+||..+|+|+.+|+++-+
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~ 200 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMH 200 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHH
Confidence 357999999999999999998764
No 293
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=81.24 E-value=1.1 Score=32.45 Aligned_cols=24 Identities=25% Similarity=0.094 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+||.+||..+|+++.+|++..+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~ 202 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLS 202 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHH
Confidence 468999999999999999998753
No 294
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=81.21 E-value=1.5 Score=31.15 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.-+|..++|+.+|||..||..||+
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~ 33 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYES 33 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458999999999999999999986
No 295
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=81.14 E-value=1.5 Score=28.84 Aligned_cols=24 Identities=4% Similarity=-0.089 Sum_probs=21.3
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...+|..+||+.+|+++++|++..
T Consensus 36 ~~~~s~~eLa~~lgis~stvs~~L 59 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASANL 59 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHH
Confidence 467899999999999999998864
No 296
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=81.12 E-value=1.2 Score=32.83 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+||.+||..+|+|+.+|+++.+
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~ 199 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLA 199 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHH
Confidence 468999999999999999998763
No 297
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=81.08 E-value=1 Score=26.49 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 18 sq~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 18 TQTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 3456899999999999999999775
No 298
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=81.06 E-value=2.9 Score=27.04 Aligned_cols=26 Identities=4% Similarity=0.028 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
..+|..+||+.+|+|+.+++++-+..
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 37999999999999999999998743
No 299
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=80.93 E-value=0.79 Score=28.26 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCChhHHHhhhcC-CCC
Q 032366 30 KVVNAARRAGADIETVRKSHAG-TNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g-~~~ 54 (142)
++-..|.+.|++..++.+||.| ...
T Consensus 25 tq~elA~~~gis~~~is~~E~G~~~~ 50 (78)
T 3qq6_A 25 SLSELAEKAGVAKSYLSSIERNLQTN 50 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 4456899999999999999999 444
No 300
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=80.91 E-value=2.1 Score=34.93 Aligned_cols=54 Identities=24% Similarity=0.236 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCC
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA-IPNQQILTKLERALGVKLR 139 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~-~p~~~~l~kLa~~Lgvsl~ 139 (142)
+|..++..+.+|-.|+|...|+....+.++..+.. .|.......||+.|+|.+.
T Consensus 7 rl~hwmnark~t~~e~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~l~~~l~v~~~ 61 (443)
T 3g7d_A 7 KLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEANEPDPAAATALAEALSVEPS 61 (443)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSCHHHHHHHC--------CHHHHHHHHHTTCCGG
T ss_pred hHHHhhhhhccccHHHHhhcCCCHHHHHHHhcCcccCCCHHHHHHHHHHhcCChH
Confidence 57788889999999999999999999999998764 5778889999999999875
No 301
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=80.89 E-value=1.8 Score=29.88 Aligned_cols=33 Identities=18% Similarity=0.045 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|..+...-++|+.+||+.+|+++++++++.
T Consensus 56 ~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l 88 (161)
T 3e6m_A 56 LRLLSSLSAYGELTVGQLATLGVMEQSTTSRTV 88 (161)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 344555555668999999999999999999864
No 302
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=80.87 E-value=2.4 Score=30.19 Aligned_cols=33 Identities=15% Similarity=0.106 Sum_probs=27.0
Q ss_pred HHHHHH-HHhCCCCHHHHHHHh-----CCCHHHHHHHHc
Q 032366 85 KAIVQA-RNDKKLTQSQLAQLI-----NEKPQVIQEYES 117 (142)
Q Consensus 85 ~~Lk~~-R~~~glTQ~eLA~~l-----gis~stIs~~E~ 117 (142)
..|+++ ....-.||.||++.+ ++|++||++..+
T Consensus 8 ~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~ 46 (149)
T 1b4a_A 8 IKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIK 46 (149)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 445555 556667999999999 999999999876
No 303
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=80.86 E-value=3.6 Score=26.55 Aligned_cols=26 Identities=15% Similarity=0.095 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
..+|..+||+.+|+|+.+++++-+-.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46999999999999999999998744
No 304
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=80.85 E-value=1.5 Score=30.80 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..++..++|+.+|||..||..||.
T Consensus 15 ~~~~I~evA~~~gvs~~tLR~Ye~ 38 (148)
T 3gpv_A 15 MYYTIGQVAKMQHLTISQIRYYDK 38 (148)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CceeHHHHHHHHCcCHHHHHHHHH
Confidence 358999999999999999999997
No 305
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=80.83 E-value=2.1 Score=29.54 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=18.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 032366 95 KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E 116 (142)
++||.+||+.+++++++++++.
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v 73 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNL 73 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHH
Confidence 4899999999999999998864
No 306
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=80.82 E-value=1 Score=28.92 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+||.|...
T Consensus 45 sq~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 45 TQEEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 4567899999999999999999876
No 307
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=80.76 E-value=0.92 Score=32.94 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+||.+||..+|+++.+|+++.+
T Consensus 177 l~~t~~~iA~~lg~sr~tvsR~l~ 200 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLSRAFS 200 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHH
Confidence 357899999999999999999864
No 308
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=80.65 E-value=0.89 Score=30.10 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=27.5
Q ss_pred eccCCCCCccccCHHHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 16 IKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
||.+-...+..++=++-..|.++|++..|+.+||.|+..
T Consensus 37 lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~G~~~ 75 (101)
T 4ghj_A 37 IGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQ 75 (101)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHCCCCC
Confidence 444333333344456677899999999999999999654
No 309
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=80.57 E-value=2.2 Score=29.07 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+-+...++-.++| .|..++|+.+|||++++.++-.++
T Consensus 13 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK 52 (188)
T 3qkx_A 13 IFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNK 52 (188)
T ss_dssp HHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSSH
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHcCCH
Confidence 3334444444554 799999999999999999997655
No 310
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=80.55 E-value=0.83 Score=27.48 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTN 53 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~ 53 (142)
++-..|.+.|++.+|+.+|+.|..
T Consensus 22 sq~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 22 TINRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp CHHHHHHHHTCCHHHHHHHHCTTC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 345689999999999999999987
No 311
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=80.51 E-value=2.1 Score=29.94 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 82 ELKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 82 ~~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+-+...++-.+.| +|..++|+.+|||+.+++++-.++.
T Consensus 35 ~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 35 QIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp HHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 34444455555555 7899999999999999999976653
No 312
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=80.31 E-value=1.3 Score=33.07 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 032366 95 KLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.+||.+||..+|+++.+|+++.+
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~ 239 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILK 239 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHH
Confidence 47999999999999999998764
No 313
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=80.26 E-value=2.5 Score=28.62 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARND-KKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~-~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|..+... .++|+.+||+.+++++++++++.
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l 75 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLV 75 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHH
Confidence 3445555433 46899999999999999998864
No 314
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=80.24 E-value=1.3 Score=29.71 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=26.5
Q ss_pred HHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARND--KKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~--~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+... .++|+.+||+.+++++++++++.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l 74 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAV 74 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 34445555555 68999999999999999988764
No 315
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=80.21 E-value=1.9 Score=29.32 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...|..+...-++|+.+||+.+|+++++++++.
T Consensus 46 ~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l 78 (155)
T 3cdh_A 46 WRVLACLVDNDAMMITRLAKLSLMEQSRMTRIV 78 (155)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 344555555568999999999999999998764
No 316
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=80.10 E-value=1.2 Score=28.19 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 19 tq~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 19 SRQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp CHHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4466899999999999999999765
No 317
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=80.02 E-value=1.5 Score=29.73 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHH
Q 032366 81 SELKKAIVQARND--KKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 81 ~~~g~~Lk~~R~~--~glTQ~eLA~~lgis~stIs~~E 116 (142)
..-...|..+... -++|+.+||+.+++++++++++.
T Consensus 41 ~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l 78 (148)
T 3jw4_A 41 SQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSML 78 (148)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHH
Confidence 3334555666555 78999999999999999888764
No 318
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=79.99 E-value=0.35 Score=35.15 Aligned_cols=35 Identities=9% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+.|.++. ..|+|..++|+.+|||++||.+|.+...
T Consensus 149 ~~i~~l~-~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~ 183 (193)
T 3uj3_X 149 EQAGRLL-AQGIPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp ------------------------------------
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 3444444 3689999999999999999999987543
No 319
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=79.98 E-value=0.98 Score=29.39 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+||.|...
T Consensus 43 tq~elA~~~gis~~~is~iE~G~~~ 67 (99)
T 3g5g_A 43 TQEDLAYKSNLDRTYISGIERNSRN 67 (99)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4566899999999999999999865
No 320
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=79.91 E-value=2.3 Score=32.97 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
.+.|.......+.++.+.|+.+|||++|+++..
T Consensus 270 ~~~i~~~l~~~~gn~~~aA~~Lgi~r~tl~~kl 302 (304)
T 1ojl_A 270 KEVILAALEKTGGNKTEAARQLGITRKTLLAKL 302 (304)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 456778888899999999999999999998764
No 321
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=79.72 E-value=2.1 Score=27.88 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 032366 95 KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E 116 (142)
.+|..+||+.+|+|+++|++..
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L 54 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKL 54 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 5999999999999999998753
No 322
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=79.51 E-value=1.1 Score=30.30 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.+++++++++++.
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 71 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLL 71 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHH
Confidence 3444555555678999999999999999999864
No 323
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=79.46 E-value=2.2 Score=29.87 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKAIP 122 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~~p 122 (142)
.+.|..++|+.+|||+.++.++-.++...
T Consensus 29 ~~~s~~~Ia~~Agvskgt~Y~yF~sKe~L 57 (197)
T 2f07_A 29 DKASISDIVKKAGTAQGTFYLYFSSKNAL 57 (197)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSSTTH
T ss_pred ccCCHHHHHHHhCCCchHHHHhCCCHHHH
Confidence 45799999999999999999998877654
No 324
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=79.43 E-value=1 Score=27.63 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|++.|++.+|+.+|+.|...
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCC
Confidence 5677999999999999999999764
No 325
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=79.23 E-value=2.7 Score=29.30 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 81 SELKKAIVQARN-DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 81 ~~~g~~Lk~~R~-~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..-...|..+.. .-++|+.+||+.+++++++|+++.
T Consensus 53 ~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l 89 (166)
T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTL 89 (166)
T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHH
Confidence 333445555555 457999999999999999998864
No 326
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=79.17 E-value=0.75 Score=28.46 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 4566899999999999999999665
No 327
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=79.14 E-value=3.2 Score=28.64 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=25.1
Q ss_pred HHHHHH-HHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 85 KAIVQA-RNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~-R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..|..+ +...+.+|.+||+.+++++++++++.
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v 67 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTL 67 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHH
Confidence 345554 34567999999999999999998875
No 328
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=78.88 E-value=1.8 Score=29.07 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..-...|..+...-++|+.+||+.+++++++|++..
T Consensus 40 ~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l 75 (147)
T 1z91_A 40 YPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPML 75 (147)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHH
Confidence 333445566666668999999999999999998764
No 329
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=78.79 E-value=2.6 Score=26.43 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 23 tq~~lA~~~gis~~~is~~e~g~~~ 47 (94)
T 2ict_A 23 SLREFARAMEIAPSTASRLLTGKAA 47 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCC
Confidence 4567899999999999999999765
No 330
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=78.73 E-value=2.7 Score=28.70 Aligned_cols=38 Identities=8% Similarity=0.008 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+-+...++-.+.| +|..++|+.+|||++++.+|-.++.
T Consensus 14 Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~ 54 (195)
T 3ppb_A 14 ILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKE 54 (195)
T ss_dssp HHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 4444444445554 7999999999999999999976653
No 331
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=78.71 E-value=1.9 Score=33.02 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+|..++|+.+|||..||..||.
T Consensus 2 ~~~tI~evA~~~gvs~~TLRyYe~ 25 (249)
T 3qao_A 2 NAMQIKELAELTGVSVRTLHHYDK 25 (249)
T ss_dssp CCBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 358999999999999999999996
No 332
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=78.59 E-value=3.5 Score=29.42 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=28.4
Q ss_pred chHHHHHHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 79 VPSELKKAIVQARN--DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~--~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+...-...|..+.. ..++|+.+||+.+|+++++++++.
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l 78 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLV 78 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 33334445555554 458999999999999999998875
No 333
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=78.50 E-value=1 Score=29.80 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 29 EKVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 29 ~~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
=++-..|.+.|++.+++.+||.|...
T Consensus 35 ltq~elA~~~gis~~~is~~E~G~~~ 60 (114)
T 3vk0_A 35 WSQEELARQCGLDRTYVSAVERKRWN 60 (114)
T ss_dssp CCHHHHHHHHTCCHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 35567899999999999999999865
No 334
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=78.44 E-value=1.2 Score=28.34 Aligned_cols=30 Identities=10% Similarity=0.125 Sum_probs=23.1
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
|..+......|..++|+++|++.+.|+++.
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~L 50 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQL 50 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHH
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHH
Confidence 344444445889999999999999988864
No 335
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=78.42 E-value=2.2 Score=32.61 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=18.0
Q ss_pred HHHHHHcCCChhHHHhhhcCC
Q 032366 32 VNAARRAGADIETVRKSHAGT 52 (142)
Q Consensus 32 ~~~a~r~G~~v~t~kk~~~g~ 52 (142)
-.-|+++|+++.|+.+..+|.
T Consensus 6 ~dvA~~agVS~~TVSrvln~~ 26 (332)
T 2hsg_A 6 YDVAREASVSMATVSRVVNGN 26 (332)
T ss_dssp HHHHHHTTSCHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHcCC
Confidence 357999999999999998764
No 336
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=78.38 E-value=1.7 Score=27.70 Aligned_cols=31 Identities=19% Similarity=-0.018 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHH-HHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLINEKPQ-VIQEY 115 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lgis~s-tIs~~ 115 (142)
+.|..+...-+.|..+||+.+||+.. .|.+.
T Consensus 15 ~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~h 46 (79)
T 1xmk_A 15 KICDYLFNVSDSSALNLAKNIGLTKARDINAV 46 (79)
T ss_dssp HHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHH
Confidence 34455666678999999999999998 66553
No 337
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=78.27 E-value=1.4 Score=28.12 Aligned_cols=24 Identities=8% Similarity=0.194 Sum_probs=21.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...+|..+||+.+|+|+++|++..
T Consensus 34 ~~~~~~~ela~~l~is~~tvs~~L 57 (98)
T 3jth_A 34 NQELSVGELCAKLQLSQSALSQHL 57 (98)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 367899999999999999998764
No 338
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=78.24 E-value=3.6 Score=28.21 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 83 LKKAIVQARNDK---KLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 83 ~g~~Lk~~R~~~---glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+-+.-.++-.++ ++|..++|+.+|||+.++.++-.++
T Consensus 13 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (206)
T 3dew_A 13 LMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGK 52 (206)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHH
T ss_pred HHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 333333443444 5799999999999999999997654
No 339
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=78.23 E-value=2.7 Score=29.39 Aligned_cols=37 Identities=5% Similarity=0.039 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+-+...++-.++| +|..++|+.+|||++++..+-.++
T Consensus 17 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K 56 (189)
T 3vp5_A 17 VYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFEDL 56 (189)
T ss_dssp HHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHHCCCH
Confidence 4444444555555 599999999999999999986654
No 340
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=78.09 E-value=5 Score=27.69 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+-+...++-.++| +|..++|+.+|||++++.++-.++.
T Consensus 12 Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 52 (195)
T 2dg7_A 12 LKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKR 52 (195)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4444444445555 7999999999999999999988764
No 341
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=78.05 E-value=7.1 Score=25.34 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
..+|..+||+.+|+|+.+++++-+-.
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35899999999999999999998754
No 342
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=77.92 E-value=3.1 Score=27.81 Aligned_cols=33 Identities=9% Similarity=-0.037 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-+ |+.+||+.+|++++++++..
T Consensus 39 ~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l 71 (144)
T 3f3x_A 39 DFSILKATSEEPR-SMVYLANRYFVTQSAITAAV 71 (144)
T ss_dssp HHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHH
Confidence 3445555555556 99999999999999998865
No 343
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=77.70 E-value=0.57 Score=29.26 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=28.4
Q ss_pred CCCCCCCCceeeccCCCCCccccCHHHHHHHHHcCCChhHHHhhhcC
Q 032366 5 GPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAG 51 (142)
Q Consensus 5 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~r~G~~v~t~kk~~~g 51 (142)
+...+||++--|.....+. +-+.-..|+++|++.+|+.+|+.+
T Consensus 3 ~~~~~~~~~~ri~~~l~~~----glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 3 NEKARDWHRADVIAGLKKR----KLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp CSSSSSCCHHHHHHHHHTT----SCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred ccccCCCCHHHHHHHHHHc----CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4556799876432211111 124566899999999999999765
No 344
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=77.53 E-value=0.98 Score=30.98 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+++|.+|-.++
T Consensus 29 ~~~t~~~IA~~agvs~~t~Y~~F~sK 54 (191)
T 3on4_A 29 NAFSFKDIATAINIKTASIHYHFPSK 54 (191)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHhCCCcchhhhcCCCH
Confidence 45899999999999999999997655
No 345
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=77.42 E-value=0.98 Score=30.74 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+-+...++-.++| .|..++|+.+|||++++.++-.++.
T Consensus 9 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (170)
T 3egq_A 9 IIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFESKQ 49 (170)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHHcCCHH
Confidence 3333444445555 6999999999999999999976653
No 346
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=77.38 E-value=1.3 Score=29.42 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..-...|..+....++|+.+||+.+|++++++++..
T Consensus 33 ~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l 68 (139)
T 3bja_A 33 YVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMI 68 (139)
T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHH
Confidence 333445556666678999999999999999888764
No 347
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=77.36 E-value=3 Score=27.89 Aligned_cols=30 Identities=13% Similarity=0.039 Sum_probs=26.3
Q ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 88 VQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 88 k~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
-.....-++|..|.|++.+||.++|.+|++
T Consensus 43 V~~v~~g~lS~~EAa~ry~Is~~ei~~W~r 72 (101)
T 2oa4_A 43 VRGVIYGLITLAEAKQTYGLSDEEFNSWVS 72 (101)
T ss_dssp HHHHHHTTCCHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 345666789999999999999999999996
No 348
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=77.33 E-value=5 Score=26.97 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=26.6
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQ 125 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~G~~~p~~~ 125 (142)
...+|..++|..+|+|+++++++-+...-.++.
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G~tp~ 123 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATTGMTPK 123 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHH
Confidence 567999999999999999999998754444443
No 349
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=77.27 E-value=1 Score=28.26 Aligned_cols=25 Identities=8% Similarity=0.117 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+||.|...
T Consensus 28 sq~~lA~~~gis~~~is~~e~g~~~ 52 (91)
T 1x57_A 28 TQKDLATKINEKPQVIADYESGRAI 52 (91)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4566899999999999999999865
No 350
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=77.27 E-value=2.9 Score=30.55 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
..-...|..+...-++|+.+||+.+++++++++++.
T Consensus 48 ~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l 83 (207)
T 2fxa_A 48 INEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFS 83 (207)
T ss_dssp HHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 333445555655678999999999999999988764
No 351
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=77.09 E-value=1.2 Score=29.27 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+++.+||.|...
T Consensus 43 sq~~lA~~~gis~~~is~~E~g~~~ 67 (117)
T 3f52_A 43 TLRELAEASRVSPGYLSELERGRKE 67 (117)
T ss_dssp CHHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4567899999999999999999875
No 352
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=77.07 E-value=6.6 Score=27.68 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=37.9
Q ss_pred HHHHHHcCCChhHHHhhhc-CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhCC
Q 032366 32 VNAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINE 107 (142)
Q Consensus 32 ~~~a~r~G~~v~t~kk~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgi 107 (142)
=+.|++.|+++.|++.|+. |-..|... +...-.+.... ...-..|+.+| ..|+|..++.+.+..
T Consensus 15 ~e~A~~~gvs~~TLR~ye~~Gll~p~r~---------~~g~R~Y~~~d--l~~l~~I~~lr-~~G~sl~eI~~~l~~ 79 (154)
T 2zhg_A 15 GEVAKRSGVAVSALHFYESKGLITSIRN---------SGNQRRYKRDV--LRYVAIIKIAQ-RIGIPLATIGEAFGV 79 (154)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTSSCCEEC---------TTSCEEBCTTH--HHHHHHHHHHH-HHTCCHHHHHHHHCC
T ss_pred HHHHHHHCcCHHHHHHHHHcCCCCcccC---------CCCCEEeCHHH--HHHHHHHHHHH-HCCCCHHHHHHHHHh
Confidence 3589999999999999976 44432111 11111122111 12334455555 459999999988874
No 353
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=76.92 E-value=1.6 Score=30.47 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKAIP 122 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~~p 122 (142)
.++|..++|+.+|||+.+|+++-.++...
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L 64 (207)
T 2rae_A 36 DATSVDEVAEASGIARRTLFRYFPSKNAI 64 (207)
T ss_dssp TTSCHHHHHHHTTSCHHHHHHHCSSTTTG
T ss_pred ccCCHHHHHHHhCCCcchHhhhCCCHHHH
Confidence 45799999999999999999998877543
No 354
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=76.91 E-value=2.2 Score=29.68 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||++||.++-..+
T Consensus 31 ~~~t~~~IA~~agvsk~tlY~~F~sK 56 (192)
T 2fq4_A 31 KAVTVDKIAERAKVSKATIYKWWPNK 56 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ccccHHHHHHHcCCCHHHHHHHCCCH
Confidence 45799999999999999999986443
No 355
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=76.90 E-value=1.5 Score=28.85 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+||.|...
T Consensus 51 sq~elA~~~gis~~~is~~E~G~~~ 75 (107)
T 2jvl_A 51 TQAELGKEIGETAATVASYERGTAT 75 (107)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 5567899999999999999999775
No 356
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=76.74 E-value=1.2 Score=31.11 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..++|+.+|||++++++|-.++.
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHFKNKS 59 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCceeehhhcCCHH
Confidence 357999999999999999999976653
No 357
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=76.69 E-value=2.6 Score=29.15 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|.++-.++.
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK~ 52 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHYDNKE 52 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTCCHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 457999999999999999999976653
No 358
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=76.65 E-value=6.8 Score=25.85 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCC-------CHHHHHHHhCCCHHHHHHH
Q 032366 81 SELKKAIVQARNDKKL-------TQSQLAQLINEKPQVIQEY 115 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~gl-------TQ~eLA~~lgis~stIs~~ 115 (142)
..+.+.|+.....-.+ |..+||+.+|||+++|.+.
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~a 53 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKA 53 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 3455556555444333 8999999999999988764
No 359
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=76.62 E-value=1.3 Score=30.54 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|+++-.++.
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERT 57 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 889999999999999999999976653
No 360
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=76.60 E-value=2.6 Score=28.85 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..++|+.+|||++++.++-.++.
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 47 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFKTKE 47 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTSSHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHH
Confidence 468999999999999999999977653
No 361
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=76.54 E-value=1.3 Score=28.35 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.7
Q ss_pred HHHHHHHHcCCChhH----HHhhhcCCCC
Q 032366 30 KVVNAARRAGADIET----VRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t----~kk~~~g~~~ 54 (142)
++-..|.+.|++.+| +.+||.|...
T Consensus 16 sq~~lA~~~gis~~~~~~~is~~E~g~~~ 44 (98)
T 3lfp_A 16 SQEKLGVLAGIDEASASARMNQYEKGKHA 44 (98)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHhCCCcchhhhHHHHHHCCCCC
Confidence 355689999999999 9999999865
No 362
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=76.50 E-value=3.1 Score=29.27 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|.++-.++.
T Consensus 27 ~~~s~~~IA~~aGvs~~tiY~~F~sKe 53 (202)
T 2d6y_A 27 AGARIDRIAAEARANKQLIYAYYGNKG 53 (202)
T ss_dssp TSCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 457999999999999999999987664
No 363
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=76.45 E-value=1.1 Score=30.97 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..++|+.+|||+.++.++-.++.
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred ccccHHHHHHHhCCchHHHHHHhCCHH
Confidence 357999999999999999999976653
No 364
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=76.40 E-value=3.2 Score=28.68 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|..+-.++.
T Consensus 22 ~~~s~~~IA~~agvsk~t~Y~~F~sK~ 48 (190)
T 3vpr_A 22 EATSVQDLAQALGLSKAALYHHFGSKE 48 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 467899999999999999999986653
No 365
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=76.20 E-value=0.53 Score=33.16 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+||++||..+|+++.+|+++-+
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~ 190 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRK 190 (194)
T ss_dssp ------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHH
Confidence 468999999999999999999864
No 366
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=76.20 E-value=1.3 Score=31.02 Aligned_cols=27 Identities=7% Similarity=0.014 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+++|.++-.++.
T Consensus 33 ~~~ti~~IA~~agvs~~t~Y~~F~sK~ 59 (212)
T 3knw_A 33 VGVGLQEILKTSGVPKGSFYHYFESKE 59 (212)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 467999999999999999999976653
No 367
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=76.20 E-value=1.8 Score=27.49 Aligned_cols=31 Identities=3% Similarity=0.056 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCCHHHH----HHHhCCCHHHHHHHH
Q 032366 86 AIVQARNDKKLTQSQL----AQLINEKPQVIQEYE 116 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eL----A~~lgis~stIs~~E 116 (142)
.|..+...-++|+.+| |+.+++++++|+++.
T Consensus 13 iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l 47 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAK 47 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3455555568999999 888999999998764
No 368
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=76.18 E-value=1.3 Score=30.79 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=25.0
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
+-.++.-.|+|.+|+|+.+|+|.++|....
T Consensus 101 vl~L~~~~g~s~~EIA~~lgis~~tV~~~l 130 (157)
T 2lfw_A 101 ALLLTAMEGFSPEDAAYLIEVDTSEVETLV 130 (157)
T ss_dssp HHTTTSSSCCCHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 444556679999999999999999998765
No 369
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=76.14 E-value=5 Score=26.46 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.++..+||+.+|+|+.++.++-+..
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 23 EWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 7899999999999999999997644
No 370
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=76.14 E-value=1.7 Score=29.60 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=27.3
Q ss_pred HHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 85 KAIVQARNDK---KLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 85 ~~Lk~~R~~~---glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+...++-.++ +.|..++|+.+|||+++|.++-.++.
T Consensus 21 ~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (156)
T 3ljl_A 21 DAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPKKT 59 (156)
T ss_dssp HHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSSTH
T ss_pred HHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 3333444444 47999999999999999999987663
No 371
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=76.05 E-value=2.4 Score=32.56 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.5
Q ss_pred HHHHHcCCChhHHHhhhcCC
Q 032366 33 NAARRAGADIETVRKSHAGT 52 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~g~ 52 (142)
.-|+++|++++|+.+..+|.
T Consensus 5 diA~~agVS~~TVSrvLn~~ 24 (340)
T 1qpz_A 5 DVAKRANVSTTTVSHVINKT 24 (340)
T ss_dssp HHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHcCc
Confidence 46999999999999998754
No 372
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=76.04 E-value=1.2 Score=29.82 Aligned_cols=26 Identities=4% Similarity=-0.120 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 29 EKVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 29 ~~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
=++-..|.+.|++.+|+.+||.|...
T Consensus 26 lsq~~lA~~~gis~~~is~~E~g~~~ 51 (126)
T 3ivp_A 26 LTREQVGAMIEIDPRYLTNIENKGQH 51 (126)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSCCC
T ss_pred CCHHHHHHHhCcCHHHHHHHHCCCCC
Confidence 35567899999999999999999865
No 373
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=75.98 E-value=7.3 Score=26.74 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHHHcCCChhHHHhhhc-CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhC
Q 032366 33 NAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLIN 106 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lg 106 (142)
+.|++.|+++.|++.|+. |-..+.....+ .-+.++.+ ....-..|+.+| ..|+|..++.+.+.
T Consensus 5 e~A~~~gvs~~tLR~ye~~Gll~p~~r~~~-g~R~Y~~~---------dl~~l~~I~~lr-~~G~sl~eI~~~l~ 68 (135)
T 1q06_A 5 DVAKITGLTSKAIRFYEEKGLVTPPMRSEN-GYRTYTQQ---------HLNELTLLRQAR-QVGFNLEESGELVN 68 (135)
T ss_dssp HHHHHHTCCHHHHHHHHHTTCSCCCEECTT-SCEECCHH---------HHHHHHHHHHHH-HTTCCHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCC-CCeeeCHH---------HHHHHHHHHHHH-HCCCCHHHHHHHHH
Confidence 578999999999999986 33332110000 01111111 111233455554 57999999988763
No 374
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=75.97 E-value=1.9 Score=30.86 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKAIP 122 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~~p 122 (142)
.=||..|+|+.+||+.++|.++.+....+
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~G~L~ 58 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLREGHLV 58 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTSCC
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHCCCce
Confidence 34799999999999999999998765444
No 375
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=75.93 E-value=3.6 Score=27.68 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...++..+||+.+|+|+++|++..
T Consensus 57 ~~~~s~~ela~~lgis~stvs~~L 80 (122)
T 1r1t_A 57 RSELCVGDLAQAIGVSESAVSHQL 80 (122)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 357899999999999999998854
No 376
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=75.82 E-value=1.3 Score=30.60 Aligned_cols=26 Identities=4% Similarity=-0.118 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.++|..++|+.+|||+++|.++-.++
T Consensus 27 ~~~t~~~IA~~Agvs~~tly~~F~sK 52 (194)
T 3dpj_A 27 AQTSFVDISAAVGISRGNFYYHFKTK 52 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHHCCChHHHHHHcCCH
Confidence 46799999999999999999997665
No 377
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=75.77 E-value=1.4 Score=27.37 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTN 53 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~ 53 (142)
++-..|++.|++.+|+.+|+.|..
T Consensus 33 sq~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 33 TQFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTCG
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 456789999999999999999986
No 378
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=75.54 E-value=1.6 Score=30.05 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+++|.++-.++
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK 51 (186)
T 2jj7_A 26 EGTSIQEIAKEAKVNVAMASYYFNGK 51 (186)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHHSSH
T ss_pred ccCCHHHHHHHhCCChhhhhhhcCCH
Confidence 35899999999999999999998654
No 379
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=75.51 E-value=1.9 Score=30.25 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.|+.+|-.++.
T Consensus 28 ~~~t~~~Ia~~Agvs~gt~Y~yF~sKe 54 (204)
T 3anp_C 28 QETTATEIAKAAHVSRGTFFNYYPYKE 54 (204)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSTH
T ss_pred ccccHHHHHHHcCCchHHHHHHcCCHH
Confidence 357899999999999999999987763
No 380
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=75.38 E-value=1.2 Score=30.47 Aligned_cols=26 Identities=12% Similarity=0.232 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.++|..++|+.+|||++++.++-.++
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK 52 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHHFPSK 52 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHhCCCchHHHHHcCCH
Confidence 45799999999999999999997665
No 381
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=75.35 E-value=1.3 Score=30.58 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.++.+|-.++.
T Consensus 33 ~~~t~~~IA~~agvs~~t~Y~~F~sK~ 59 (191)
T 4aci_A 33 EGATVRRLEEATGKSRGAIFHHFGDKE 59 (191)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred ccCCHHHHHHHHCCCchHHHHHCCCHH
Confidence 358999999999999999999987653
No 382
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=75.33 E-value=3 Score=27.42 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+|+.|+..
T Consensus 29 tq~eLA~~lGis~~~is~ie~G~~~ 53 (104)
T 3trb_A 29 SANQLAKHLAIPTNRVTAILNGARS 53 (104)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4567899999999999999999875
No 383
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=75.24 E-value=3.5 Score=28.58 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|.++-.++.
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (213)
T 2qtq_A 35 VDISLSELSLRSGLNSALVKYYFGNKA 61 (213)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHSSHH
T ss_pred ccccHHHHHHHhCCChhhHhHhcCCHH
Confidence 457999999999999999999987763
No 384
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=75.10 E-value=4.3 Score=28.09 Aligned_cols=37 Identities=8% Similarity=0.039 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+-+...++-.++| +|..++|+.+|||+++|.++-..+
T Consensus 9 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 48 (185)
T 2yve_A 9 ILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPSR 48 (185)
T ss_dssp HHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHhCcCH
Confidence 4444444445555 689999999999999999987654
No 385
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=75.05 E-value=3.1 Score=30.04 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+-+.-.++-.+.| +|..++|+.+|||+.+|.++-.++.
T Consensus 49 Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 49 ILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 4444444555555 6999999999999999999976653
No 386
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=75.03 E-value=4.1 Score=30.64 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc-CC---CCCCHHHHHHHHHHhC
Q 032366 78 RVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES-GK---AIPNQQILTKLERALG 135 (142)
Q Consensus 78 ~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~-G~---~~p~~~~l~kLa~~Lg 135 (142)
.+++.-.+.|.. + ..|+|.+|+|+.+|+|..||...-. +. ...+...+...|..+|
T Consensus 197 ~L~~~erevl~L-~-~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~~~a~~~g 256 (258)
T 3clo_A 197 ILSEREKEILRC-I-RKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMK 256 (258)
T ss_dssp SSCHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 344444444444 5 5899999999999999999987764 21 3344555555555554
No 387
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=74.95 E-value=2.7 Score=29.06 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||++++.++-.++
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (202)
T 3lwj_A 31 YNTSIRDIIALSEVGTGTFYNYFVDK 56 (202)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 35799999999999999999997655
No 388
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=74.94 E-value=1.4 Score=30.49 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+-+.-.++-.+.| +|..++|+.+|||+++|..+-.++
T Consensus 22 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK 61 (206)
T 3kz9_A 22 LMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTR 61 (206)
T ss_dssp HHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSH
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcCCH
Confidence 3334444445555 789999999999999999997665
No 389
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=74.87 E-value=3.1 Score=32.26 Aligned_cols=52 Identities=17% Similarity=0.292 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCC-HHHHHHHh
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLT-QSQLAQLI 105 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glT-Q~eLA~~l 105 (142)
+--.-|+++|+++.|+.+..+|... +..+..+++.+..++.|+. ...+|+.+
T Consensus 11 Ti~diA~~aGVS~~TVSrvLn~~~~------------------------Vs~~tr~rV~~~a~~lgY~~pn~~a~~l 63 (366)
T 3h5t_A 11 TLASIAAKLGISRTTVSNAYNRPEQ------------------------LSAELRQRILDTAEDMGYLGPDPVARSL 63 (366)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHCGGG------------------------SCHHHHHHHHHHHHHTTC----------
T ss_pred CHHHHHHHhCCCHHHHHHHHCCCCC------------------------CCHHHHHHHHHHHHHhCCCCCCHHHHHh
Confidence 4556899999999999998875432 4455677788887888886 55555544
No 390
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=74.68 E-value=8.5 Score=26.85 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=37.2
Q ss_pred HHHHHHcCCChhHHHhhhc-CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhC
Q 032366 32 VNAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLIN 106 (142)
Q Consensus 32 ~~~a~r~G~~v~t~kk~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lg 106 (142)
=+.|++.|+++.|++-|+. |-..+.... .-.-+.++.+ ....-..|+.+ ...|+|..++.+.+.
T Consensus 20 ~evA~~~gvs~~tLR~Ye~~Gll~p~~r~-~~g~R~Y~~~---------dl~~l~~I~~l-r~~G~sL~eIk~~l~ 84 (148)
T 3gpv_A 20 GQVAKMQHLTISQIRYYDKQGLFPFLQRN-EKGDRIFNEE---------ALKYLEMILCL-KNTGMPIQKIKQFID 84 (148)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTCCTTCEEC-TTCCEEBCHH---------HHHHHHHHHHH-HTTTCCHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHCCCCCCCcCC-CCCCeecCHH---------HHHHHHHHHHH-HHcCCCHHHHHHHHH
Confidence 4589999999999999997 443321110 0011111111 11233445555 457999999988775
No 391
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=74.66 E-value=3.1 Score=29.95 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+-+...++-.++| +|..++|+.+|||+.+|+++-.++.
T Consensus 18 Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~ 58 (231)
T 2qib_A 18 LIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPGKL 58 (231)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 4444445555565 6999999999999999999976653
No 392
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=74.65 E-value=3.1 Score=30.45 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=23.5
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
|..+. ...+|..+||+.+|+|+++|++..
T Consensus 26 L~~L~-~~~~s~~eLA~~lglS~stv~~~l 54 (192)
T 1uly_A 26 LKLLR-NKEMTISQLSEILGKTPQTIYHHI 54 (192)
T ss_dssp HHHHT-TCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHH-cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 44444 568999999999999999998753
No 393
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=74.52 E-value=1.5 Score=30.90 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+-+.-.++-.++| .|..++|+.+|||+.+|.+|-.++.
T Consensus 22 Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 22 LILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp HHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred HHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4444444555555 6999999999999999999987663
No 394
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=74.34 E-value=1.6 Score=30.81 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 83 LKKAIVQARNDK---KLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 83 ~g~~Lk~~R~~~---glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+-+.-.++-.++ ++|..++|+.+|||+.+|.++-.++.
T Consensus 35 Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~ 75 (222)
T 3bru_A 35 LIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKA 75 (222)
T ss_dssp HHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCCCHH
Confidence 444444444445 56999999999999999999976653
No 395
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=74.29 E-value=16 Score=27.35 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=39.4
Q ss_pred HHHHHcCCChhHHHhhhc-CCCCCCCC-CCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhCCC
Q 032366 33 NAARRAGADIETVRKSHA-GTNKAASS-STSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEK 108 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~-g~~~~~~~-~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis 108 (142)
+.|++.|+++.|+|.|+. |-..|... +. -.-+-++.+ .+ ..-..|+.+| ..|+|.+++.+.+...
T Consensus 10 e~a~~~gvs~~tlr~y~~~gll~p~~~d~~-~g~R~y~~~-------~~--~~l~~i~~l~-~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 10 EVSKLANVSIKALRYYDKIDLFKPAYVDPD-TSYRYYTDS-------QL--IHLDLIKSLK-YIGTPLEEMKKAQDLE 76 (278)
T ss_dssp HHHHHHTCCHHHHHHHHHTTSSCCSEECTT-TCCEEEETG-------GG--GHHHHHHHHH-HTTCCHHHHHHHTTSC
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCC-CCccccCHH-------HH--HHHHHHHHHH-HCCCCHHHHHHHHHhC
Confidence 579999999999999976 55543211 00 011112211 11 1334466664 4699999999988765
No 396
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=74.28 E-value=1.4 Score=29.28 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++..|+.+||.|...
T Consensus 38 tq~elA~~~gis~~~is~~E~G~~~ 62 (111)
T 3mlf_A 38 TQKELGDLFKVSSRTIQNMEKDSTN 62 (111)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHCCTT
T ss_pred CHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 4567899999999999999999865
No 397
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=74.16 E-value=2.6 Score=28.88 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 032366 95 KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E 116 (142)
++|+.+||+.+++++++++++.
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v 72 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTV 72 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHH
Confidence 5999999999999999998875
No 398
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=74.10 E-value=0.45 Score=31.31 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=22.0
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 26 sq~~lA~~~gis~~~is~~e~g~~~ 50 (113)
T 2eby_A 26 KINELAELLHVHRNSVSALINNNRK 50 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 4567899999999999999999765
No 399
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=74.02 E-value=6.8 Score=29.50 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=37.5
Q ss_pred HHHHHcCCChhHHHhhhc-CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhC
Q 032366 33 NAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLIN 106 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lg 106 (142)
+.|++.|+++.|++-|+. |-..+.... .-.-+.++.+ ....-..|+.++...|+|.+++.+.+.
T Consensus 5 evA~~~Gvs~~TLRyYE~~GLl~p~~R~-~~gyR~Y~~~---------dl~~L~~I~~lr~~~G~sL~eIk~~l~ 69 (222)
T 2dg6_A 5 DLSKRSGVSTATIKYYLREGLLPPGRQV-NATTAEYDED---------HLRRLRLVRALIQVGKVPVATAREVLG 69 (222)
T ss_dssp HHHHHHTCCHHHHHHHHHHTSSCCC----------CCHH---------HHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCeeC-CCCceeeCHH---------HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 478999999999999987 444421110 0111112211 112345566777767999999887663
No 400
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=74.02 E-value=3.6 Score=27.35 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=21.1
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...++..+||+.+|+|+++|++..
T Consensus 32 ~~~~~~~eLa~~lgis~stvs~~L 55 (118)
T 2jsc_A 32 DGVCYPGQLAAHLGLTRSNVSNHL 55 (118)
T ss_dssp TTCCSTTTHHHHHSSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 456899999999999999999865
No 401
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=73.92 E-value=1.5 Score=30.54 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..++|+.+|||+.+|.++-.++.
T Consensus 27 ~~~t~~~IA~~agvs~~t~Y~~F~sK~ 53 (195)
T 3frq_A 27 IEFTLSGVAKEVGLSRAALIQRFTNRD 53 (195)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 467999999999999999999987653
No 402
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=73.84 E-value=2.2 Score=30.11 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|+++-.++.
T Consensus 34 ~~~s~~~IA~~agvs~~t~Y~~F~sKe 60 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFGDRD 60 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 457999999999999999999987653
No 403
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=73.84 E-value=3.6 Score=29.00 Aligned_cols=34 Identities=12% Similarity=0.247 Sum_probs=27.3
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 86 AIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 86 ~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.|-..+- .+.|..++|+.+|||+.+|+.+-.++.
T Consensus 31 ~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~sK~ 64 (215)
T 2hku_A 31 ELFLEHG-EGVPITQICAAAGAHPNQVTYYYGSKE 64 (215)
T ss_dssp HHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred HHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 3333455 679999999999999999999987653
No 404
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=73.75 E-value=0.67 Score=36.90 Aligned_cols=34 Identities=6% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
...|..+....++||.+||+.+|+|++||++...
T Consensus 23 ~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~ 56 (345)
T 2o0m_A 23 FQILRNIYWMQPIGRRSLSETMGITERVLRTETD 56 (345)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3445666667799999999999999999988754
No 405
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=73.73 E-value=6.2 Score=27.39 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 84 KKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.+.......|.+..++|+.+++|+.++.++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~ia~~l~is~~tv~~~l~~~ 180 (184)
T 3rqi_A 145 WEHIQRVLAENNNNISATARALNMHRRTLQRKLAKK 180 (184)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHCC-
T ss_pred HHHHHHHHHhccccHHHHHHHcCCcHHHHHHHHHhc
Confidence 355666677789999999999999999999998754
No 406
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=73.67 E-value=7.3 Score=26.21 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHhCC------C-CHHHHHHHhCCCHHHHHHH
Q 032366 80 PSELKKAIVQARNDKK------L-TQSQLAQLINEKPQVIQEY 115 (142)
Q Consensus 80 ~~~~g~~Lk~~R~~~g------l-TQ~eLA~~lgis~stIs~~ 115 (142)
...+.+.|+.....-. | |..+||+.+|||+++|.+.
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~A 57 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRA 57 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHH
Confidence 3445666666554433 3 7999999999999988764
No 407
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=73.55 E-value=1.9 Score=28.84 Aligned_cols=34 Identities=0% Similarity=-0.033 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+...-++|+.+||+.+|+++++|++..
T Consensus 39 ~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l 72 (142)
T 2bv6_A 39 QFLVLTILWDESPVNVKKVVTELALDTGTVSPLL 72 (142)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHH
Confidence 3344555555667999999999999999888764
No 408
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=73.53 E-value=1.7 Score=28.04 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=21.3
Q ss_pred HHHHHHHHcCCChhHHHhhhcC-CCC
Q 032366 30 KVVNAARRAGADIETVRKSHAG-TNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g-~~~ 54 (142)
++-..|++.|++.+|+.+|+.| ...
T Consensus 16 tq~~lA~~~gis~~~i~~~e~g~~~~ 41 (111)
T 1b0n_A 16 SLSELAEKAGVAKSYLSSIERNLQTN 41 (111)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCC
Confidence 4566899999999999999999 554
No 409
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=73.49 E-value=4 Score=33.93 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
.++|..++|+.+|||+.+|.+++.
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~ 417 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIEN 417 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 689999999999999999999985
No 410
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=73.47 E-value=4.1 Score=26.62 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHhC----CCHHHHHHHH
Q 032366 85 KAIVQARNDKKLTQSQLAQLIN----EKPQVIQEYE 116 (142)
Q Consensus 85 ~~Lk~~R~~~glTQ~eLA~~lg----is~stIs~~E 116 (142)
..|..+....++|+.+||+.++ +++++|+++.
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l 49 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLI 49 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHH
Confidence 3445555567899999999999 8899988864
No 411
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=73.33 E-value=1.2 Score=30.86 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..++|+.+|||++++.++-.++.
T Consensus 39 ~~~t~~~Ia~~agvs~~t~Y~~F~~K~ 65 (203)
T 3mnl_A 39 EAVQMRAVADRADVAVGTLYRYFPSKV 65 (203)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHcCCChhHHHHHcCCHH
Confidence 358999999999999999999976653
No 412
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=73.27 E-value=1.2 Score=30.52 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+.+|.++-.++
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (195)
T 3pas_A 27 SATSVGKIAKAAGLSPATLYIYYEDK 52 (195)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred HhcCHHHHHHHhCCCchHHHHHcCCH
Confidence 35899999999999999999997665
No 413
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=73.23 E-value=2.4 Score=30.03 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=29.9
Q ss_pred HHHHHHHHH-HHhCC---CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 82 ELKKAIVQA-RNDKK---LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 82 ~~g~~Lk~~-R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+-+...++ ..++| .|..++|+.+|||++++.++-.++.
T Consensus 23 ~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K~ 65 (185)
T 3o60_A 23 KLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEII 65 (185)
T ss_dssp HHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 344555555 45555 7899999999999999999987763
No 414
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=72.97 E-value=1.7 Score=30.53 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||++++.++-.++.
T Consensus 30 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 56 (216)
T 3f0c_A 30 CKTTMNEIASDVGMGKASLYYYFPDKE 56 (216)
T ss_dssp SSCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CcCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 357999999999999999999976653
No 415
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=72.95 E-value=1.5 Score=30.93 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||++++.++-.++.
T Consensus 22 ~~~s~~~IA~~Agvs~~t~Y~~F~sK~ 48 (212)
T 3rh2_A 22 RTITTNHIAAHLDISPGNLYYHFRNKE 48 (212)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 458999999999999999999976653
No 416
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=72.92 E-value=1.3 Score=30.93 Aligned_cols=28 Identities=18% Similarity=0.092 Sum_probs=24.3
Q ss_pred HhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 92 NDKKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 92 ~~~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
--.+.|..++|+.+|||+.+|.+|-.++
T Consensus 35 G~~~~s~~~IA~~aGvs~~tlY~~F~sK 62 (212)
T 3loc_A 35 GFHGTRLEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHHHSSSH
T ss_pred CcccCCHHHHHHHHCcCHHHHhhhCCCH
Confidence 3356899999999999999999998765
No 417
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=72.92 E-value=9 Score=29.17 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=36.6
Q ss_pred HHHHHcCCChhHHHhhhc-CCCCCCCCCCCcccccchhhhccccCCcchHHHHHHHHHHHHhCCCCHHHHHHHhCC
Q 032366 33 NAARRAGADIETVRKSHA-GTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINE 107 (142)
Q Consensus 33 ~~a~r~G~~v~t~kk~~~-g~~~~~~~~~~~~~~kl~~~~~~~~~~~~~~~~g~~Lk~~R~~~glTQ~eLA~~lgi 107 (142)
..|++.|+++.|++-|+. |-.+|..... -.-+.++.. ....-..|+.+| ..|+|..++...+..
T Consensus 8 evA~~~gvs~~TLRyYe~~GLL~p~~~~~-~GyR~Y~~~---------dl~~L~~I~~lr-~~G~sL~eIk~~l~~ 72 (249)
T 3qao_A 8 ELAELTGVSVRTLHHYDKIGLLVPQKDDW-NGYRIYSEK---------DVDKLQQILFFK-ELDFPLKKIQQILDD 72 (249)
T ss_dssp HHHHHHCCCHHHHHHHHHTTSSCCEECTT-TCCEEBCHH---------HHHHHHHHHHHH-HTTCCHHHHHHHHHC
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCceECC-CCCeeeCHH---------HHHHHHHHHHHH-HCCCCHHHHHHHhcc
Confidence 479999999999999997 4444321000 001111111 111233344444 679999988887754
No 418
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=72.91 E-value=5 Score=25.59 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.3
Q ss_pred HhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 92 NDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 92 ~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
....++..+||+.+|+|+++|++..
T Consensus 33 ~~~~~~~~ela~~l~is~~tvs~~L 57 (102)
T 3pqk_A 33 VEGEFSVGELEQQIGIGQPTLSQQL 57 (102)
T ss_dssp HTCCBCHHHHHHHHTCCTTHHHHHH
T ss_pred HhCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3466999999999999999988754
No 419
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=72.85 E-value=5.4 Score=29.47 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=31.3
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCC----CCCCHHHHHHHHHHhC
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYESGK----AIPNQQILTKLERALG 135 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~G~----~~p~~~~l~kLa~~Lg 135 (142)
..|+|.+|+|+.+|||..||..+-..- ...+...+..+|..+|
T Consensus 188 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~g 234 (236)
T 2q0o_A 188 SKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRG 234 (236)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 579999999999999999998776421 2345555555555555
No 420
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=72.83 E-value=1.9 Score=31.47 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=28.3
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHHc-----CC--------CCCCHHHHHHHHHH
Q 032366 95 KLTQSQLAQLINEKP-QVIQEYES-----GK--------AIPNQQILTKLERA 133 (142)
Q Consensus 95 glTQ~eLA~~lgis~-stIs~~E~-----G~--------~~p~~~~l~kLa~~ 133 (142)
.+||.+||..+|+++ .+|+++.+ |- ...+.+.|..++..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~~i~I~d~~~L~~~~~~ 221 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPK 221 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHCHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhcC
Confidence 789999999999999 59887643 21 13466667766653
No 421
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=72.58 E-value=3.3 Score=29.80 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..++|+.+|||+++|..+-.++.
T Consensus 62 ~~~tv~~IA~~AGvs~~t~Y~~F~sKe 88 (229)
T 3bni_A 62 DALSTRAVALRADVPIGSVYRFFGNKR 88 (229)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhccHHHHHHHHCCCchhHHHHcCCHH
Confidence 458999999999999999999976653
No 422
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=72.56 E-value=1.5 Score=30.42 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.++|..++|+.+|||+.+|.+|-..+
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F~sK 61 (208)
T 3cwr_A 36 AAMTMEGVASEAGIAKKTLYRFASGR 61 (208)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HhccHHHHHHHhCCCHHHHHHHcCCH
Confidence 46899999999999999999997654
No 423
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=72.49 E-value=2.3 Score=29.99 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|.++-.++.
T Consensus 31 ~~ts~~~IA~~aGvsk~tlY~~F~sKe 57 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHFTDKE 57 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 467999999999999999999987653
No 424
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=72.45 E-value=2.7 Score=29.62 Aligned_cols=28 Identities=14% Similarity=-0.040 Sum_probs=23.9
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
-.++|..++|+.+|||+++++++-.++.
T Consensus 30 ~~~~s~~~IA~~agvs~~t~Y~hF~~Ke 57 (198)
T 3cjd_A 30 LASLRARELARQADCAVGAIYTHFQDLN 57 (198)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred hhhcCHHHHHHHhCCCccHHHHHhCCHH
Confidence 3457999999999999999999976653
No 425
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=72.44 E-value=7 Score=24.43 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 81 SELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
..+...|...|... ||....|...||+.+||..-.+|.
T Consensus 17 ~~L~~Ai~aVr~g~-mS~~~Aak~yGVP~sTL~~RVk~~ 54 (70)
T 2cob_A 17 EILEEAISVVMSGK-MSVSKAQSIYGIPHSTLEYKVKER 54 (70)
T ss_dssp HHHHHHHHHHHTTS-SCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccHHHHHHHhCCChHHHHHHHHhh
Confidence 45777788877644 999999999999999999766654
No 426
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=72.36 E-value=7.4 Score=26.48 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhCC------C-CHHHHHHHhCCCHHHHHHH
Q 032366 82 ELKKAIVQARNDKK------L-TQSQLAQLINEKPQVIQEY 115 (142)
Q Consensus 82 ~~g~~Lk~~R~~~g------l-TQ~eLA~~lgis~stIs~~ 115 (142)
.+...|+.....-. | |..+||+.+|||+++|.+-
T Consensus 8 ~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~A 48 (129)
T 2ek5_A 8 QIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNG 48 (129)
T ss_dssp HHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 34555555544332 3 8999999999999988765
No 427
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=72.24 E-value=1.4 Score=30.80 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+++|..|-.++.
T Consensus 33 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 59 (215)
T 3e7q_A 33 QGASVRKICAEAGVSVGLINHHYDGKD 59 (215)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 468999999999999999999976553
No 428
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=72.18 E-value=2.2 Score=29.35 Aligned_cols=26 Identities=12% Similarity=-0.082 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+++|.+|-.++
T Consensus 26 ~~~t~~~IA~~agvs~~t~Y~~F~sK 51 (199)
T 3qbm_A 26 AGTAISDIMAATGLEKGGIYRHFESK 51 (199)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred CcCCHHHHHHHhCCCccHHHHhCCCH
Confidence 46899999999999999999986654
No 429
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.16 E-value=4.6 Score=24.77 Aligned_cols=23 Identities=4% Similarity=0.029 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHh-----CCCHHHHHHHH
Q 032366 94 KKLTQSQLAQLI-----NEKPQVIQEYE 116 (142)
Q Consensus 94 ~glTQ~eLA~~l-----gis~stIs~~E 116 (142)
..+|..||++.+ ++|.+||++..
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L 59 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVL 59 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHH
Confidence 479999999999 99999999864
No 430
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=72.02 E-value=1.3 Score=30.95 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 83 LKKAIVQARNDK---KLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 83 ~g~~Lk~~R~~~---glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+-+...++-.+. ++|..++|+.+|||+++|..+-.++.
T Consensus 14 Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~ 54 (193)
T 2dg8_A 14 ILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIE 54 (193)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSHH
T ss_pred HHHHHHHHHHHhChhhccHHHHHHHhCCCchhhheeCCCHH
Confidence 333344444444 57999999999999999999876553
No 431
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=72.01 E-value=5.2 Score=29.30 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=27.0
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPN 123 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~~~p~ 123 (142)
+..+++..-+|-.|||+.+|+|.+||.+=..--..|.
T Consensus 18 ~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 18 RQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 3444555558999999999999999987555444454
No 432
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=71.98 E-value=2.4 Score=29.96 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+.+|.++-.++
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2wui_A 30 GTTAMADLADAAGVSRGAVYGHYKNK 55 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred cccCHHHHHHHhCCCHHHHHHHcCCH
Confidence 35799999999999999999987554
No 433
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=71.96 E-value=3.4 Score=28.75 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..++|+.+|||+++|.++-.++.
T Consensus 37 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 63 (212)
T 1pb6_A 37 HGTRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHSSSHH
T ss_pred chhhHHHHHHHHCCChhHHHHhCCCHH
Confidence 457999999999999999999976653
No 434
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=71.94 E-value=1.9 Score=30.36 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|+.|-.++.
T Consensus 29 ~~~s~~~IA~~aGvs~~t~Y~~F~sKe 55 (210)
T 3vib_A 29 ARTSLNEIAQAAGVTRDALYWHFKNKE 55 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHHCcCHHHHHHHCCCHH
Confidence 467999999999999999999976553
No 435
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=71.89 E-value=4.4 Score=26.08 Aligned_cols=20 Identities=0% Similarity=0.036 Sum_probs=18.6
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 032366 97 TQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 97 TQ~eLA~~lgis~stIs~~E 116 (142)
|..+||+.+|+|+++|.+..
T Consensus 37 s~~eLa~~~~vSr~tvr~al 56 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 89999999999999999864
No 436
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=71.83 E-value=8.5 Score=25.98 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCC------C-CHHHHHHHhCCCHHHHHHH
Q 032366 81 SELKKAIVQARNDKK------L-TQSQLAQLINEKPQVIQEY 115 (142)
Q Consensus 81 ~~~g~~Lk~~R~~~g------l-TQ~eLA~~lgis~stIs~~ 115 (142)
..+...|+.....-. + |..+||+.+|||+++|.+-
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~A 55 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKA 55 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHH
Confidence 345566665544433 4 9999999999999998864
No 437
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=71.55 E-value=0.81 Score=33.18 Aligned_cols=30 Identities=27% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 88 VQARNDKKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 88 k~~R~~~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
-.++--.|+|.+|+|+.+|+|.++|..+..
T Consensus 207 l~l~~~~g~s~~EIA~~lgis~~tV~~~~~ 236 (243)
T 1l0o_C 207 VYLRYYKDQTQSEVASRLGISQVQMSRLEK 236 (243)
T ss_dssp ------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 334556799999999999999999988764
No 438
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=71.54 E-value=1.9 Score=30.65 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|++|-.++.
T Consensus 43 ~~~s~~~IA~~aGvskgtlY~yF~sKe 69 (214)
T 2oer_A 43 QRFTTARVAERAGVSIGSLYQYFPNKA 69 (214)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccccHHHHHHHhCCCCchHHHhCCCHH
Confidence 467999999999999999999976653
No 439
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=71.53 E-value=4.6 Score=27.58 Aligned_cols=26 Identities=8% Similarity=-0.061 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+.++..+-.++
T Consensus 21 ~~~s~~~Ia~~agvskgtlY~~F~sK 46 (179)
T 2eh3_A 21 QGTSVEEIVKRANLSKGAFYFHFKSK 46 (179)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHhCCCcHHHHHHcCCH
Confidence 46799999999999999999997655
No 440
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=71.47 E-value=1.7 Score=30.43 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+++|.++-.++.
T Consensus 45 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 71 (217)
T 3mvp_A 45 FNVTTNEIAKKADVSVGTLYAYFASKE 71 (217)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred cccCHHHHHHHhCCChhHHHHHcCCHH
Confidence 358999999999999999999976653
No 441
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=71.40 E-value=7.6 Score=27.70 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+-+...++-.+.| +|..++|+.+|||+++|..+-.++
T Consensus 44 Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~F~sK 83 (214)
T 2guh_A 44 IVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGSK 83 (214)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSSH
T ss_pred HHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHHcCCH
Confidence 4344444455555 799999999999999999998665
No 442
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=71.38 E-value=3.4 Score=30.82 Aligned_cols=43 Identities=12% Similarity=0.054 Sum_probs=30.9
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALG 135 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E~G----~~~p~~~~l~kLa~~Lg 135 (142)
..|+|.+|+|+.+|||..||..+... -...+...+..+|..+|
T Consensus 188 ~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~g 234 (237)
T 3szt_A 188 AVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIG 234 (237)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 57999999999999999999887642 12334555555555554
No 443
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=71.37 E-value=1.7 Score=30.64 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|+++-.++.
T Consensus 42 ~~~t~~~IA~~agvs~~t~Y~~F~sK~ 68 (214)
T 2zb9_A 42 AQLTFERVARVSGVSKTTLYKWWPSKG 68 (214)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 357999999999999999999976553
No 444
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=71.36 E-value=1.8 Score=30.42 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+.|..++|+.+|||+.+|+++-.++
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F~sK 56 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTK 56 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred CCCHHHHHHHhCCCHHHHHHHCCCH
Confidence 5899999999999999999997665
No 445
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=71.10 E-value=4.9 Score=30.12 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 032366 95 KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E 116 (142)
++|..|||+.+|++++|++++.
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l 44 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYM 44 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 6999999999999999999875
No 446
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=70.96 E-value=6 Score=25.89 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=21.1
Q ss_pred hCCCCHHHHHHHh-CCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLI-NEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~l-gis~stIs~~E 116 (142)
.-++++.+||+.+ |++++++++..
T Consensus 33 ~~~~~~~eLa~~l~~is~~tvs~~L 57 (112)
T 1z7u_A 33 QGTKRNGELMRALDGITQRVLTDRL 57 (112)
T ss_dssp HSCBCHHHHHHHSTTCCHHHHHHHH
T ss_pred hCCCCHHHHHHHhccCCHHHHHHHH
Confidence 3679999999999 99999998754
No 447
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=70.94 E-value=1.4 Score=30.59 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||++++.++-.++
T Consensus 30 ~~~s~~~Ia~~agvs~~t~Y~~F~sK 55 (203)
T 3b81_A 30 ENTTLAFIINKLGISKGALYHYFSSK 55 (203)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred ccCcHHHHHHHhCCCchhHHHHcCCH
Confidence 35799999999999999999886554
No 448
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=70.88 E-value=3.7 Score=29.40 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=23.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCC
Q 032366 96 LTQSQLAQLINEKPQVIQEYESGKAI 121 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~G~~~ 121 (142)
-|+.++|+.+|++.++|+++.+|+..
T Consensus 136 ~s~~eAa~~~Gvs~~tIs~~~~gk~k 161 (174)
T 1u3e_M 136 PSTKCACEELGLTRGKVTDVLKGHRI 161 (174)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHTSSS
T ss_pred CCHHHHHHHHCcCHhHhHHHHcCCCC
Confidence 48999999999999999999999753
No 449
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=70.83 E-value=2.5 Score=28.94 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 83 LKKAIVQARNDK---KLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 83 ~g~~Lk~~R~~~---glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+-+...++-.++ +.|..++|+.+|||++++.++-.++
T Consensus 13 Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (183)
T 1zk8_A 13 IVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGL 52 (183)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred HHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcCCH
Confidence 333344444444 5899999999999999999886554
No 450
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=70.72 E-value=6.4 Score=29.01 Aligned_cols=55 Identities=11% Similarity=-0.036 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 032366 79 VPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESG----KAIPNQQILTKLERALG 135 (142)
Q Consensus 79 ~~~~~g~~Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G----~~~p~~~~l~kLa~~Lg 135 (142)
+.+.-.+.|.- ...|+|.+|+|+.+|+|..||...... -...+...+..+|..+|
T Consensus 174 Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~g 232 (234)
T 1l3l_A 174 LDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRK 232 (234)
T ss_dssp CCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred CCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 44433344433 358999999999999999999877642 12345555555555555
No 451
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=70.68 E-value=0.87 Score=32.78 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES 117 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~ 117 (142)
..+||.+||..+|+++.+|+++.+
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~ 186 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVFQ 186 (213)
T ss_dssp ------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Confidence 458999999999999999998765
No 452
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=70.68 E-value=1.8 Score=30.21 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=25.8
Q ss_pred HHHHHHhC---CCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 87 IVQARNDK---KLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 87 Lk~~R~~~---glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
-.++-.++ +.|..++|+.+|||+.+|+++-.++
T Consensus 17 A~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK 52 (199)
T 2o7t_A 17 TCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDR 52 (199)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 33444445 4699999999999999999997655
No 453
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=70.67 E-value=2.1 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
++-..|.+.|++.+|+.+|+.|...
T Consensus 33 tq~~lA~~~gis~~~is~~e~g~~~ 57 (104)
T 3cec_A 33 NTANFAEILGVSNQTIQEVINGQRS 57 (104)
T ss_dssp CHHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCcC
Confidence 4566889999999999999999765
No 454
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=70.66 E-value=4.6 Score=26.25 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred hCCCCHHHHHHHh-CCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLI-NEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~l-gis~stIs~~E 116 (142)
.-.+++.+||+.+ |+|++++++..
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L 49 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQL 49 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHH
Confidence 4569999999999 99999998843
No 455
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=70.59 E-value=1.9 Score=30.70 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|.++-.++.
T Consensus 22 ~~~s~~~IA~~AGvskgtlY~hF~sKe 48 (208)
T 2g3b_A 22 RGLRVNDVAEVAGVSPGLLYYHFKDRI 48 (208)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHHCSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 468999999999999999999987664
No 456
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=70.34 E-value=6.1 Score=27.32 Aligned_cols=29 Identities=3% Similarity=0.015 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
|..+. .-.+++.+|++.+|++++++++..
T Consensus 30 L~~L~-~g~~~~~eLa~~lgis~~tls~~L 58 (146)
T 2f2e_A 30 VRDAF-EGLTRFGEFQKSLGLAKNILAARL 58 (146)
T ss_dssp HHHHH-TTCCSHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHH-hCCCCHHHHHHHhCCCHHHHHHHH
Confidence 34443 456999999999999999998753
No 457
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=70.28 E-value=1.2 Score=31.17 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||++++.++-.++
T Consensus 44 ~~~t~~~Ia~~agvs~~t~Y~~F~sK 69 (212)
T 3nxc_A 44 QRITTAKLAASVGVSEAALYRHFPSK 69 (212)
T ss_dssp --CCHHHHHHHTTSCHHHHHTTCSSH
T ss_pred hhcCHHHHHHHhCCChhHHHHHCCCH
Confidence 45899999999999999999987655
No 458
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=70.24 E-value=2.4 Score=30.13 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+-+.-.++-.++| .|..++|+.+|||+.+|++|-.++
T Consensus 27 Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~F~sK 66 (207)
T 3bjb_A 27 MLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFPSK 66 (207)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCCCH
Confidence 3334444455555 689999999999999999986654
No 459
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=70.07 E-value=7.1 Score=27.34 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=26.1
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
|-..+--.+.|..++|+.+|||+.+|.++-.++
T Consensus 23 lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~sK 55 (202)
T 2i10_A 23 LFWRQGYEGTSITDLTKALGINPPSLYAAFGSK 55 (202)
T ss_dssp HHHHHTTTTCCHHHHHHHHTCCHHHHHHHHCSH
T ss_pred HHHHhCcccCCHHHHHHHhCCChHHHHHHhCCH
Confidence 333344456899999999999999999998665
No 460
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=70.05 E-value=2.6 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCChhHHHhhhcCCC
Q 032366 30 KVVNAARRAGADIETVRKSHAGTN 53 (142)
Q Consensus 30 ~~~~~a~r~G~~v~t~kk~~~g~~ 53 (142)
++-..|.+.|++..|+.+|+.|..
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 556789999999999999999954
No 461
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=69.98 E-value=4.3 Score=28.13 Aligned_cols=25 Identities=4% Similarity=0.058 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+.|..++|+.+|||+.+|.++-.++
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F~sK 59 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHFPSR 59 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CCCHHHHHHHhCCchHHHHHHCCCH
Confidence 6899999999999999999997655
No 462
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=69.98 E-value=4.9 Score=28.73 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|.++-..+.
T Consensus 59 ~~~t~~~IA~~Agvs~~t~Y~~F~sK~ 85 (225)
T 2id3_A 59 DALDLGEIARRAGVGKTTVYRRWGTPG 85 (225)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred ccCCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 358999999999999999999987664
No 463
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=69.90 E-value=2.6 Score=29.55 Aligned_cols=27 Identities=7% Similarity=-0.084 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|.++-.++.
T Consensus 26 ~~ts~~~IA~~aGvs~gtlY~~F~sKe 52 (197)
T 2gen_A 26 DATTIEMIRDRSGASIGSLYHHFGNKE 52 (197)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTCSHH
T ss_pred ccCCHHHHHHHHCCChHHHHHHCCCHH
Confidence 456999999999999999999976653
No 464
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=69.87 E-value=1.9 Score=30.58 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+.+|.+|-.++
T Consensus 27 ~~~s~~~IA~~AGvs~gt~Y~yF~sK 52 (206)
T 1vi0_A 27 HQSQVSKIAKQAGVADGTIYLYFKNK 52 (206)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCH
Confidence 35799999999999999999997665
No 465
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=69.83 E-value=1.2 Score=31.12 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=22.2
Q ss_pred HhCCCCHHHHHH----Hh--CCCHHHHHHHHc
Q 032366 92 NDKKLTQSQLAQ----LI--NEKPQVIQEYES 117 (142)
Q Consensus 92 ~~~glTQ~eLA~----~l--gis~stIs~~E~ 117 (142)
..-++||.+||+ .. +++++||++|.+
T Consensus 27 ~~~~~~q~~la~wa~~~f~~~is~stis~ilk 58 (144)
T 1iuf_A 27 LQNRSGQQDLIEWFREKFGKDISQPSVSQILS 58 (144)
T ss_dssp SSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHH
T ss_pred hCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHh
Confidence 346799999999 88 899999999864
No 466
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=69.82 E-value=1.9 Score=30.78 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..++|+.+|||++++.++-.++.
T Consensus 24 ~~~t~~~IA~~Agvs~~t~Y~~F~sK~ 50 (228)
T 3nnr_A 24 RNITTNHIAAHLAISPGNLYYHFRNKS 50 (228)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhcCHHHHHHHhCCCCccchhcCCCHH
Confidence 358999999999999999999976653
No 467
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=69.65 E-value=3.6 Score=29.52 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=23.8
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 91 RNDKKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 91 R~~~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+--.+.|..++|+.+|||+++|.++-.++
T Consensus 46 ~G~~~~t~~~IA~~Agvs~~t~Y~~F~sK 74 (230)
T 2iai_A 46 RGYDGTSMEHLSKAAGISKSSIYHHVTGK 74 (230)
T ss_dssp HCTTTCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred cCccccCHHHHHHHHCCChhHHHHhCCCH
Confidence 33356899999999999999999886554
No 468
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=69.63 E-value=3.7 Score=28.60 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+.+|..|-.++
T Consensus 29 ~~~s~~~IA~~aGvs~gtlY~yF~sK 54 (194)
T 2nx4_A 29 EAANMRDIATEAGYTNGALSHYFAGK 54 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHhCCCcchHHHhCcCH
Confidence 56899999999999999999997665
No 469
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=69.62 E-value=2.2 Score=30.57 Aligned_cols=28 Identities=14% Similarity=-0.002 Sum_probs=23.9
Q ss_pred HhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 92 NDKKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 92 ~~~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
--.+.|..++|+.+|||+.+|+.|-.++
T Consensus 31 G~~~~s~~~IA~~AGvs~~tlY~~F~sK 58 (208)
T 3v6g_A 31 GLGGLSHRRVAAEANVPVGSTTYYFNDL 58 (208)
T ss_dssp CTTCCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred CcccCCHHHHHHHhCCCchhHHHHcCCH
Confidence 3356799999999999999999997655
No 470
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=69.58 E-value=1.8 Score=29.57 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHHHH-HHhCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQA-RNDKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~-R~~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+ ....++|+.+||+.+|++++++++..
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l 83 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLV 83 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHH
Confidence 33445555 45568999999999999998887764
No 471
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=69.54 E-value=2 Score=30.32 Aligned_cols=27 Identities=15% Similarity=0.031 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|.++-.++.
T Consensus 28 ~~~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 28 EGASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 458999999999999999999976553
No 472
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=69.37 E-value=2.5 Score=28.89 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+.++.++-.++
T Consensus 29 ~~~ti~~Ia~~agvs~~t~Y~~F~sK 54 (196)
T 3col_A 29 AGVSTTKVAKRVGIAQSNVYLYFKNK 54 (196)
T ss_dssp GGCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHhCCH
Confidence 35899999999999999999986554
No 473
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=69.21 E-value=20 Score=23.66 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCChhHHHhhhcCCCC
Q 032366 29 EKVVNAARRAGADIETVRKSHAGTNK 54 (142)
Q Consensus 29 ~~~~~~a~r~G~~v~t~kk~~~g~~~ 54 (142)
=++-..|.+.|++..++.+||.|...
T Consensus 21 lSq~eLA~~~gis~~~is~iE~G~~~ 46 (112)
T 2wus_R 21 ITLLDASLFTNINPSKLKRIEEGDLK 46 (112)
T ss_dssp CCHHHHHHHSSCCHHHHHHHHHTCCT
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCCC
Confidence 35667899999999999999999875
No 474
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=68.85 E-value=6.3 Score=24.09 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhC----CCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLIN----EKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~lg----is~stIs~~E 116 (142)
...|..+....++|+.+|++.++ ++++||+++.
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l 48 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTML 48 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHH
Confidence 33455555566899999999996 7899988764
No 475
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=68.51 E-value=8.7 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..+||+.+|||+.+|+++-.++.
T Consensus 25 ~~~S~r~IA~~aGvs~~tlY~hF~~K~ 51 (234)
T 2opt_A 25 DALSMRRLAQELKTGHASLYAHVGNRD 51 (234)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred cccCHHHHHHHHCCChhHHHHHcCCHH
Confidence 358999999999999999999987654
No 476
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=68.41 E-value=5.2 Score=27.58 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=20.3
Q ss_pred HHHHHHHcC--CChhHHHhhhcCCCC
Q 032366 31 VVNAARRAG--ADIETVRKSHAGTNK 54 (142)
Q Consensus 31 ~~~~a~r~G--~~v~t~kk~~~g~~~ 54 (142)
.-++|...| ++..|-..||.|...
T Consensus 19 ~~EaA~~i~~~vs~rtWQqWE~G~~~ 44 (120)
T 1s4k_A 19 IEECTIYITQDNNSATWQRWEAGDIP 44 (120)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTSSC
T ss_pred HHHHHHHHhccCCHHHHHHHHCCCCC
Confidence 456888887 789999999999875
No 477
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=68.37 E-value=1.3 Score=30.48 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.+.|..++|+.+|||+++|.++-.++
T Consensus 29 ~~~t~~~IA~~agvs~~tlY~~F~sK 54 (197)
T 3rd3_A 29 SGVGLNEILQSAGVPKGSFYHYFKSK 54 (197)
T ss_dssp TTCCHHHHHHHHTCCHHHHTTTCSCH
T ss_pred ccCCHHHHHHHhCCChhhHHHHcCCH
Confidence 35799999999999999999886554
No 478
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=68.26 E-value=4.9 Score=29.02 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhC----CCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 83 LKKAIVQARNDK----KLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 83 ~g~~Lk~~R~~~----glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
+-+.-.++-.+. ++|..++|+.+|||+.+|+++-.++
T Consensus 10 Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sK 50 (220)
T 1z0x_A 10 IIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNK 50 (220)
T ss_dssp HHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred HHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHHhcCCH
Confidence 444444455555 5799999999999999999986654
No 479
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=68.26 E-value=1.1 Score=32.64 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC
Q 032366 87 IVQARNDKKLTQSQLAQLINEKPQVIQEYESG 118 (142)
Q Consensus 87 Lk~~R~~~glTQ~eLA~~lgis~stIs~~E~G 118 (142)
|.++. ..|+|..++|+.+|+|.+|+.+|.+.
T Consensus 151 i~~l~-~~G~s~~~Ia~~l~vs~~T~yr~l~~ 181 (193)
T 3plo_X 151 AGRLL-AQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp --------------------------------
T ss_pred HHHHH-HCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 44443 35899999999999999999998764
No 480
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=68.16 E-value=4.3 Score=28.38 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|..+-.++.
T Consensus 33 ~~~s~~~IA~~agvs~~tlY~~F~sKe 59 (204)
T 2ibd_A 33 RATTVRDIADAAGILSGSLYHHFDSKE 59 (204)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCSCHH
T ss_pred hhcCHHHHHHHhCCCchhHHHhcCCHH
Confidence 467999999999999999999976653
No 481
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=68.14 E-value=4.7 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 83 LKKAIVQARNDKK---LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 83 ~g~~Lk~~R~~~g---lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
+-+.-.++-.+.| +|..++|+.+|||+.+|++|-.++.
T Consensus 48 Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 48 ILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKE 88 (255)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 4444445555555 6999999999999999999976653
No 482
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=68.09 E-value=7.3 Score=28.84 Aligned_cols=33 Identities=9% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCH--HHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARNDKKLTQ--SQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~~~glTQ--~eLA~~lgis~stIs~~E 116 (142)
+-..|..+.. .|+|+ .+||+.+|++++++++..
T Consensus 11 ~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l 45 (230)
T 1fx7_A 11 YLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTV 45 (230)
T ss_dssp HHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHH
Confidence 4444444443 37888 999999999999888764
No 483
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=68.07 E-value=4.4 Score=28.82 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|..|-.++.
T Consensus 54 ~~~t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 54 HSVGIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 458999999999999999999976653
No 484
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=67.96 E-value=2.7 Score=30.37 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.++|..+||+.+|||+.+|+++-.++
T Consensus 21 ~~~s~~~IA~~aGvs~~tlY~hf~~K 46 (209)
T 3bqy_A 21 DTLTMRRLAQAMDVQAGALYRYFAAK 46 (209)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHhCCCcchHHhhcCCH
Confidence 46899999999999999999997654
No 485
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=67.77 E-value=7.2 Score=26.17 Aligned_cols=33 Identities=3% Similarity=-0.023 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHh--CCCHHHHHHHH
Q 032366 84 KKAIVQARNDKKLTQSQLAQLI--NEKPQVIQEYE 116 (142)
Q Consensus 84 g~~Lk~~R~~~glTQ~eLA~~l--gis~stIs~~E 116 (142)
...|..++..-.+|..+||+.+ |+|+++|++..
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL 50 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRL 50 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 4445666666789999999999 99999998854
No 486
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=67.68 E-value=4.5 Score=29.84 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E 116 (142)
.-++++.+||+.+|++++++++..
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l 41 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMM 41 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHH
Confidence 346899999999999999998765
No 487
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=67.66 E-value=2.3 Score=29.50 Aligned_cols=24 Identities=4% Similarity=-0.043 Sum_probs=21.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Q 032366 96 LTQSQLAQLINEKPQVIQEYESGK 119 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~G~ 119 (142)
.|..++|+.+|||+++|.++-.++
T Consensus 35 ~s~~~IA~~agvs~~tlY~~F~sK 58 (194)
T 2q24_A 35 AHLERIAREAGVGSGTLYRNFPTR 58 (194)
T ss_dssp CCHHHHHHHTTCCHHHHHHHCCSH
T ss_pred CCHHHHHHHhCCChHHHHHHcCCH
Confidence 799999999999999999997655
No 488
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=67.61 E-value=1.8 Score=31.15 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|+++-.++.
T Consensus 49 ~~~s~~~IA~~aGvs~~tlY~~F~sK~ 75 (226)
T 2pz9_A 49 AGARVDRIAKQARTSKERVYAYFRSKE 75 (226)
T ss_dssp HHCCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred ccCcHHHHHHHHCCChHHHHHHcCCHH
Confidence 468999999999999999999976653
No 489
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.60 E-value=12 Score=24.50 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=24.7
Q ss_pred HHHHHH--hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 87 IVQARN--DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 87 Lk~~R~--~~glTQ~eLA~~lgis~stIs~~E 116 (142)
++.+.. ..|+.+.+|...+|+++.+|+++.
T Consensus 43 y~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiL 74 (95)
T 2yu3_A 43 YQIIEDAGNKGIWSRDVRYKSNLPLTEINKIL 74 (95)
T ss_dssp HHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHH
Confidence 344444 689999999999999999998875
No 490
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=67.55 E-value=2.4 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|.+|-.++.
T Consensus 28 ~~~s~~~IA~~aGvs~gtlY~yF~sKe 54 (209)
T 2gfn_A 28 SAVTTRAVAEESGWSTGVLNHYFGSRH 54 (209)
T ss_dssp GGCCHHHHHHHHSSCHHHHHHHTSSHH
T ss_pred ccCCHHHHHHHHCCCcchHHhcCCCHH
Confidence 467999999999999999999976653
No 491
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=67.50 E-value=4.8 Score=27.37 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=17.0
Q ss_pred HHHHHHcC-----CChhHHHhhhcCCC
Q 032366 32 VNAARRAG-----ADIETVRKSHAGTN 53 (142)
Q Consensus 32 ~~~a~r~G-----~~v~t~kk~~~g~~ 53 (142)
-..|...| ++.+++..||.|..
T Consensus 28 ~elA~~~~~~G~~iS~s~is~iE~G~r 54 (123)
T 3qwg_A 28 AEVIAALKAEGITMSAPYLSQLRSGNR 54 (123)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHTSS
T ss_pred HHHHHHHcccCCCcCHHHHHHHHcCCC
Confidence 34445554 99999999999986
No 492
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=67.48 E-value=3.6 Score=30.47 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 032366 95 KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E 116 (142)
++|+.++|+.+++|+++|++..
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I 48 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRII 48 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHH
Confidence 5889999999999999998864
No 493
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=67.28 E-value=9.5 Score=25.40 Aligned_cols=24 Identities=8% Similarity=-0.013 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Q 032366 95 KLTQSQLAQLINEKPQVIQEYESG 118 (142)
Q Consensus 95 glTQ~eLA~~lgis~stIs~~E~G 118 (142)
.+|..+||+.+|+|+.+++++-+-
T Consensus 27 ~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 27 PLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp CCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 599999999999999999999864
No 494
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=67.27 E-value=3.8 Score=28.84 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 96 LTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 96 lTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.|..++|+.+|||+++|+++-.++.
T Consensus 32 ~s~~~IA~~agvs~~tiY~~F~sK~ 56 (224)
T 1t33_A 32 ATTRDIAALAGQNIAAITYYFGSKE 56 (224)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHSSHH
T ss_pred ccHHHHHHHhCCCHHHHHHhcCCHH
Confidence 8999999999999999999987764
No 495
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=67.24 E-value=7 Score=30.91 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=24.0
Q ss_pred HHHHHHHhC--CCCHHHHHHHhCCCHHHHHHHH
Q 032366 86 AIVQARNDK--KLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 86 ~Lk~~R~~~--glTQ~eLA~~lgis~stIs~~E 116 (142)
.|+.++... -+|..+||+.+|+|+++|.+..
T Consensus 8 iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i 40 (323)
T 3rkx_A 8 VLQLLYKNKPNYISGQSIAESLNISRTAVKKVI 40 (323)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHH
Confidence 344555433 4899999999999999998764
No 496
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=67.21 E-value=4.2 Score=28.35 Aligned_cols=27 Identities=7% Similarity=-0.025 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.+.|..++|+.+|||+.+|+.+-.++.
T Consensus 31 ~~~s~~~IA~~aGvs~~tlY~~F~sKe 57 (197)
T 2hyt_A 31 ADTSMDDLTAQASLTRGALYHHFGDKK 57 (197)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHHSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 457999999999999999999987653
No 497
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=67.20 E-value=2.6 Score=30.47 Aligned_cols=27 Identities=22% Similarity=0.142 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYESGKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~G~~ 120 (142)
.++|..+||+.+|||+.+++++-.++.
T Consensus 22 ~~~s~~~IA~~~Gvs~~slY~hF~~K~ 48 (207)
T 2xpw_A 22 DGLTTRKLAQKLGIEQPTLYWHVKNKR 48 (207)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCCCHH
T ss_pred ccCCHHHHHHHhCCCcchHHHhcCCHH
Confidence 468999999999999999999976654
No 498
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=66.99 E-value=3.4 Score=27.35 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=21.4
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 93 DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 93 ~~glTQ~eLA~~lgis~stIs~~E 116 (142)
...++..+||+.+|+|+++|++..
T Consensus 29 ~~~~~~~eLa~~l~is~~tvs~hL 52 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKHI 52 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHHH
T ss_pred hCCCCHHHHHHHhCcCHHHHHHHH
Confidence 577899999999999999998764
No 499
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=66.97 E-value=3.4 Score=31.17 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc-CCC
Q 032366 94 KKLTQSQLAQLINEKPQVIQEYES-GKA 120 (142)
Q Consensus 94 ~glTQ~eLA~~lgis~stIs~~E~-G~~ 120 (142)
.-+|..++|+.+|||..||..||. |--
T Consensus 4 ~~~~i~e~a~~~gvs~~tlr~y~~~gll 31 (278)
T 1r8e_A 4 SYYSIGEVSKLANVSIKALRYYDKIDLF 31 (278)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTSS
T ss_pred CcEeHHHHHHHHCcCHHHHHHHHHCCCC
Confidence 347899999999999999999986 443
No 500
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=66.89 E-value=3.5 Score=28.51 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=23.0
Q ss_pred HHHHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHH
Q 032366 83 LKKAIVQARN--DKKLTQSQLAQLINEKPQVIQEYE 116 (142)
Q Consensus 83 ~g~~Lk~~R~--~~glTQ~eLA~~lgis~stIs~~E 116 (142)
-...|..+.. ..++|+.+||+.+++++++|+++.
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l 83 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLI 83 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHH
Confidence 3445555555 358999999999999999988764
Done!