BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032367
MKPCICSFSSRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHSKDNKEEQMDQ
IRERCGKEACELTSSKRISDDIMPHILNLYGSCATSHDFEIYAPHASFEDPLMCAHGVKQ
IKSAFYAISKVGQEASQEPRNS

High Scoring Gene Products

Symbol, full name Information P value
AT5G04830 protein from Arabidopsis thaliana 5.5e-22

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032367
        (142 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2175463 - symbol:AT5G04830 "AT5G04830" species...   256  5.5e-22   1


>TAIR|locus:2175463 [details] [associations]
            symbol:AT5G04830 "AT5G04830" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            GO:GO:0005886 EMBL:CP002688 GenomeReviews:BA000015_GR EMBL:AB008271
            EMBL:AF360335 EMBL:AY051070 IPI:IPI00525860 RefSeq:NP_568142.1
            RefSeq:NP_850766.1 UniGene:At.25046 ProteinModelPortal:Q9FMC7
            IntAct:Q9FMC7 STRING:Q9FMC7 PaxDb:Q9FMC7 PRIDE:Q9FMC7 DNASU:830362
            EnsemblPlants:AT5G04830.1 EnsemblPlants:AT5G04830.2 GeneID:830362
            KEGG:ath:AT5G04830 TAIR:At5g04830 eggNOG:NOG266361
            HOGENOM:HOG000029842 InParanoid:Q9FMC7 OMA:KQIKSAF PhylomeDB:Q9FMC7
            ProtClustDB:CLSN2689465 ArrayExpress:Q9FMC7 Genevestigator:Q9FMC7
            Uniprot:Q9FMC7
        Length = 178

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 51/78 (65%), Positives = 62/78 (79%)

Query:    58 MDQIRERCGKEACELTSSKRISDDIMPHILNLYGSCATSHDFEIYAPHASFEDPLMCAHG 117
             MD  RE  GK ACEL S+KR +D IMPH+LNLYGS A ++DF++YAP+ASFEDPL  A G
Sbjct:     1 MDPARECEGKGACELKSNKRFADKIMPHLLNLYGSSAKANDFDMYAPNASFEDPLTHAQG 60

Query:   118 VKQIKSAFYAISKVGQEA 135
             VKQIKSAFY++ KV  E+
Sbjct:    61 VKQIKSAFYSLPKVFGES 78


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.128   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       142   0.00091  102 3  11 22  0.44    31
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  565 (60 KB)
  Total size of DFA:  140 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.91u 0.14s 18.05t   Elapsed:  00:00:00
  Total cpu time:  17.91u 0.14s 18.05t   Elapsed:  00:00:00
  Start:  Sat May 11 02:46:11 2013   End:  Sat May 11 02:46:11 2013

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