BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032367
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TIS|A Chain A, Crystal Structure Of Thymidylate Synthase From T4 Phage
Length = 286
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 13 LPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHSKDNKEEQMDQIRERCGKEACEL 72
LP + S L+H +VAK P L+ +TH N EQ +I R KE CEL
Sbjct: 184 LPFNIASYATLVH---IVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPKELCEL 240
Query: 73 TSS 75
S
Sbjct: 241 VIS 243
>pdb|2PUA|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUB|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUC|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUD|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
Length = 340
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 15 LSHTSQHHLIHQTRLVA-----------KKMQESPSPLME--KVNHTHS 50
+S T+ H+I++TR VA K++ SPS + KVNHT S
Sbjct: 12 VSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKS 60
>pdb|1JFS|A Chain A, Purine Repressor Mutant-Hypoxanthine-Purf Operator
Complex
Length = 340
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 15 LSHTSQHHLIHQTRLVA-----------KKMQESPSPLME--KVNHTHS 50
+S T+ H+I++TR VA K++ SPS + KVNHT S
Sbjct: 12 VSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKS 60
>pdb|1PNR|A Chain A, Purine Repressor-Hypoxanthine-Purf-Operator Complex
pdb|1BDI|A Chain A, Purine Repressor Mutant-Hypoxanthine-Palindromic
Operator Complex
pdb|1WET|A Chain A, Structure Of The Purr-Guanine-Purf Operator Complex
pdb|1QP0|A Chain A, Purine Repressor-Hypoxanthine-Palindromic Operator
Complex
pdb|1QP4|A Chain A, Purine Repressor-Hypoxanthine-Palindromic Operator
Complex
pdb|1QPZ|A Chain A, Purine Repressor-Hypoxanthine-Palindromic Operator
Complex
pdb|1ZAY|A Chain A, Purine Repressor-hypoxanthine-modified-purf-operator
Complex
Length = 340
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 15 LSHTSQHHLIHQTRLVA-----------KKMQESPSPLME--KVNHTHS 50
+S T+ H+I++TR VA K++ SPS + KVNHT S
Sbjct: 12 VSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKS 60
>pdb|1JFT|A Chain A, Purine Repressor Mutant-hypoxanthine-purf Operator
Complex
Length = 340
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 15 LSHTSQHHLIHQTRLVA-----------KKMQESPSPLME--KVNHTHS 50
+S T+ H+I++TR VA K++ SPS + KVNHT S
Sbjct: 12 VSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKS 60
>pdb|1VPW|A Chain A, Structure Of The Purr Mutant, L54m, Bound To
Hypoxanthine And Purf Operator Dna
Length = 340
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 15 LSHTSQHHLIHQTRLVA-----------KKMQESPSPLME--KVNHTHS 50
+S T+ H+I++TR VA K++ SPS + KVNHT S
Sbjct: 12 VSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSMKVNHTKS 60
>pdb|1JH9|A Chain A, Purine Repressor Mutant-Hypoxanthine-Purf Operator
Complex
Length = 340
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 15 LSHTSQHHLIHQTRLVA-----------KKMQESPSPLME--KVNHTHS 50
+S T+ H+I++TR VA K++ SPS + KVNHT S
Sbjct: 12 VSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKS 60
>pdb|2PUE|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUF|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
pdb|2PUG|A Chain A, Crystal Structure Of The Laci Family Member, Purr, Bound
To Dna: Minor Groove Binding By Alpha Helices
Length = 340
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 13/49 (26%)
Query: 15 LSHTSQHHLIHQTRLVA-----------KKMQESPSPLME--KVNHTHS 50
+S T+ H+I++TR VA K++ SPS + KVNHT S
Sbjct: 12 VSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKS 60
>pdb|2IML|A Chain A, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
pdb|2IML|B Chain B, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
pdb|2IML|C Chain C, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
pdb|2IML|D Chain D, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
Length = 199
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 23 LIHQTRLVAKKMQESPSPLMEKVNHTHSKDNKEEQMDQIRERCGKE 68
L+H TR VA K E L+E++++ +I ++CG E
Sbjct: 142 LVHATRYVAIKSDERRKELLERIHYYR----------EIVQKCGSE 177
>pdb|2X4H|A Chain A, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
pdb|2X4H|B Chain B, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
pdb|2X4H|C Chain C, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
pdb|2X4H|D Chain D, Crystal Structure Of The Hypothetical Protein Sso2273 From
Sulfolobus Solfataricus
Length = 139
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 30 VAKKMQESPSPLMEKVNHTHSKD--NKEEQMDQIRERCGKEACELTSSKRISDDIMPHI- 86
+AK ++ +PS + E+V+H K K+E I + L + R+ + ++ +I
Sbjct: 37 IAKDLKIAPSSVFEEVSHLEEKGLVKKKEDGVWITNNGTRSINYLIKAHRVIEILLVNIG 96
Query: 87 LNLYGSCATSHDFEIYAP-------HASFEDPLMCAHGVK 119
++ +C S F+ P + P C HG++
Sbjct: 97 IDKQTACEYSKQFDYLIPEEIIDKLYNYLGKPSYCPHGLE 136
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 26.6 bits (57), Expect = 5.7, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 37 SPSPLMEKVNHTHSKDNKEEQMDQIRERCGKEACELTSSKRISDDIMP 84
S L EKV H+K +++E ++ +R+ C K C + + + D+ P
Sbjct: 237 SGGELFEKVADEHNKMSEDEAVEYMRQVC-KGLCHMHENNYVHLDLKP 283
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 26.2 bits (56), Expect = 6.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 37 SPSPLMEKVNHTHSKDNKEEQMDQIRERCGKEACELTSSKRISDDIMP 84
S L EKV H+K +++E ++ +R+ C K C + + + D+ P
Sbjct: 131 SGGELFEKVADEHNKMSEDEAVEYMRQVC-KGLCHMHENNYVHLDLKP 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.128 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,015,663
Number of Sequences: 62578
Number of extensions: 142959
Number of successful extensions: 438
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 14
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)