BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032367
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q42583|KPRS2_ARATH Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Arabidopsis
thaliana GN=PRS2 PE=1 SV=2
Length = 400
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 24 IHQTRLVAKKMQESPSPLMEKVNHTHSKDNKEEQMDQIRERCGKEACELTSSKRISDDIM 83
+ + R AKK+ ++P +++K H H N E M+ I + GK A + DDI+
Sbjct: 261 VARARAFAKKLSDAPLAIVDKRRHGH---NVAEVMNLIGDVKGKVAV-------MVDDII 310
Query: 84 PHILNLYGSCATSHD---FEIYA--PHASFEDP 111
+ A H+ E+YA HA F P
Sbjct: 311 DTAGTIVKGAALLHEEGAREVYACCTHAVFSPP 343
>sp|B7VMG4|PURR_VIBSL HTH-type transcriptional repressor PurR OS=Vibrio splendidus
(strain LGP32) GN=purR PE=3 SV=1
Length = 334
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 10 SRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHS 50
+RL +S T+ H+I++TR VA+ QE + ++++N+ S
Sbjct: 8 ARLAGVSTTTVSHVINKTRFVAEATQEKVNKAVDELNYAPS 48
>sp|P00471|TYSY_BPT4 Thymidylate synthase OS=Enterobacteria phage T4 GN=TD PE=1 SV=1
Length = 286
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 13 LPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHSKDNKEEQMDQIRERCGKEACEL 72
LP + S L+H +VAK P L+ +TH N EQ +I R KE CEL
Sbjct: 184 LPFNIASYATLVH---IVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPKELCEL 240
Query: 73 TSS 75
S
Sbjct: 241 VIS 243
>sp|A7N1L2|PURR_VIBHB HTH-type transcriptional repressor PurR OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=purR PE=3 SV=1
Length = 334
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 10 SRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHS 50
+RL +S T+ H+I++TR VA+ QE ++++N+ S
Sbjct: 8 ARLAGVSTTTVSHVINKTRFVAETTQEKVMKAVDELNYAPS 48
>sp|Q87QW9|PURR_VIBPA HTH-type transcriptional repressor PurR OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=purR PE=3 SV=1
Length = 334
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 10 SRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHS 50
+RL +S T+ H+I++TR VA+ QE ++++N+ S
Sbjct: 8 ARLAGVSTTTVSHVINKTRFVAEATQEKVMKAVDELNYAPS 48
>sp|Q7MJ57|PURR_VIBVY HTH-type transcriptional repressor PurR OS=Vibrio vulnificus
(strain YJ016) GN=purR PE=3 SV=1
Length = 334
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 10 SRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHS 50
+RL +S T+ H+I++TR VA+ QE ++++N+ S
Sbjct: 8 ARLAGVSTTTVSHVINKTRFVAEATQEKVMKAVDELNYAPS 48
>sp|Q8DAQ5|PURR_VIBVU HTH-type transcriptional repressor PurR OS=Vibrio vulnificus
(strain CMCP6) GN=purR PE=3 SV=1
Length = 334
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 10 SRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHS 50
+RL +S T+ H+I++TR VA+ QE ++++N+ S
Sbjct: 8 ARLAGVSTTTVSHVINKTRFVAEATQEKVMKAVDELNYAPS 48
>sp|Q944C1|PLCD4_ARATH Phosphoinositide phospholipase C 4 OS=Arabidopsis thaliana GN=PLC4
PE=2 SV=2
Length = 597
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 21/91 (23%)
Query: 35 QESPSP--LMEKV-------------NHTHSKDNKEEQMDQIRERCGKEACELTSSKRIS 79
QE PSP L EK+ N T KDN E+ D + GKE +L S++
Sbjct: 240 QEFPSPEELKEKILISTKPPKEYLEANDTKEKDNGEKGKDSDEDVWGKEPEDLISTQSDL 299
Query: 80 DDIMPHILNL------YGSCATSHDFEIYAP 104
D + + +L GSC + ++ AP
Sbjct: 300 DKVTSSVNDLNQDDEERGSCESDTSCQLQAP 330
>sp|C3LN44|PURR_VIBCM HTH-type transcriptional repressor PurR OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=purR PE=3 SV=1
Length = 336
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 10 SRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHS 50
+RL +S T+ H+I++TR VA+ QE ++++N+ S
Sbjct: 8 ARLAGVSTTTVSHVINKTRFVAETTQEKVMEAVKQLNYAPS 48
>sp|Q9KRC1|PURR_VIBCH HTH-type transcriptional repressor PurR OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=purR PE=3 SV=1
Length = 336
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 10 SRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHS 50
+RL +S T+ H+I++TR VA+ QE ++++N+ S
Sbjct: 8 ARLAGVSTTTVSHVINKTRFVAETTQEKVMEAVKQLNYAPS 48
>sp|A5F7H0|PURR_VIBC3 HTH-type transcriptional repressor PurR OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=purR PE=3 SV=1
Length = 336
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 10 SRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHS 50
+RL +S T+ H+I++TR VA+ QE ++++N+ S
Sbjct: 8 ARLAGVSTTTVSHVINKTRFVAETTQEKVMEAVKQLNYAPS 48
>sp|P14010|GABAT_EMENI 4-aminobutyrate aminotransferase OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=gatA PE=3 SV=1
Length = 498
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 8 FSSRLLPLSHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHSKDNKEEQMDQIRERCGK 67
F RL T++ IH+ + A ++P P ++ H+K+N EE+ +RC +
Sbjct: 219 FHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHAKENAEEE-----QRCLQ 273
Query: 68 EACEL 72
EA L
Sbjct: 274 EAERL 278
>sp|Q27171|DYHC_PARTE Dynein heavy chain, cytoplasmic OS=Paramecium tetraurelia GN=DHC-8
PE=2 SV=1
Length = 4540
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 33 KMQESPSPLMEKVNHTHSKDNKEEQMDQIRERCGKEACELTSSKRISDDIMPHILN 88
K++E L++ +N++ ++E++ Q E+ KEA + + +D IM ++N
Sbjct: 3632 KLRELEDQLLDSLNNSRGSILEDEKVIQTLEKLKKEAAVIVQEMKQADTIMNEVMN 3687
>sp|B8DE53|SYGB_LISMH Glycine--tRNA ligase beta subunit OS=Listeria monocytogenes
serotype 4a (strain HCC23) GN=glyS PE=3 SV=1
Length = 688
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 1 MKPCICSFSSRLLPL-------SHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHSKDN 53
+K I F ++P S+TS+ H K+ + P+ L+E+ ++++
Sbjct: 159 IKWLIAMFGEEIIPFEITGVTTSNTSRGHRFLGKSATIKQPSDYPNALLEQFVVVNAEER 218
Query: 54 KEEQMDQIRERCGKEACELTSSKRISDDIMPHILNL 89
K+ ++Q+RE E ++ DD++ + NL
Sbjct: 219 KQAIVEQLRELESMENWQIKE----DDDLLEEVTNL 250
>sp|Q8Y754|SYGB_LISMO Glycine--tRNA ligase beta subunit OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=glyS PE=3 SV=1
Length = 688
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Query: 1 MKPCICSFSSRLLPL-------SHTSQHHLIHQTRLVAKKMQESPSPLMEKVNHTHSKDN 53
+K I F ++P S+TS+ H K+ + P+ L+E+ ++++
Sbjct: 159 IKWLIAMFDEEIIPFEITGVTTSNTSRGHRFLGKSATIKQPSDYPNALLEQFVVVNAEER 218
Query: 54 KEEQMDQIRERCGKEACELTSSKRISDDIMPHILNL 89
K+ ++Q+RE E ++ DD++ + NL
Sbjct: 219 KQAIVEQLRELESMENWQIKE----DDDLLEEVTNL 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.128 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,229,215
Number of Sequences: 539616
Number of extensions: 1813613
Number of successful extensions: 5994
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5976
Number of HSP's gapped (non-prelim): 34
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)