Query 032367
Match_columns 142
No_of_seqs 38 out of 40
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 13:10:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10184 DUF2358: Uncharacteri 97.3 0.00029 6.4E-09 50.7 3.4 55 79-136 4-62 (113)
2 cd00781 ketosteroid_isomerase 95.5 0.014 3.1E-07 39.7 3.0 54 81-134 7-62 (122)
3 PF12680 SnoaL_2: SnoaL-like d 95.3 0.0046 1E-07 38.9 0.0 50 88-137 6-55 (102)
4 TIGR02096 conserved hypothetic 93.4 0.086 1.9E-06 35.9 2.9 55 81-135 2-58 (129)
5 TIGR02246 conserved hypothetic 89.0 0.54 1.2E-05 31.6 3.2 52 82-133 9-61 (128)
6 PF07366 SnoaL: SnoaL-like pol 87.9 0.39 8.5E-06 33.1 2.0 56 82-137 3-59 (126)
7 TIGR02960 SigX5 RNA polymerase 85.2 1.1 2.4E-05 35.9 3.5 57 77-133 204-264 (324)
8 PF02136 NTF2: Nuclear transpo 74.6 1.6 3.5E-05 29.7 1.1 49 82-131 5-56 (118)
9 cd00531 NTF2_like Nuclear tran 73.0 3.8 8.1E-05 25.9 2.4 48 82-130 4-57 (124)
10 COG4319 Ketosteroid isomerase 65.2 6.6 0.00014 30.9 2.8 46 88-133 21-67 (137)
11 PRK08241 RNA polymerase factor 56.9 9.9 0.00021 31.0 2.6 51 78-128 215-267 (339)
12 PF13474 SnoaL_3: SnoaL-like d 48.4 7.4 0.00016 25.5 0.5 48 81-128 3-52 (121)
13 KOG1525 Sister chromatid cohes 46.5 4 8.6E-05 41.5 -1.5 60 71-131 42-109 (1266)
14 smart00545 JmjN Small domain f 45.2 5.9 0.00013 25.3 -0.3 31 105-136 9-39 (42)
15 PF07908 D-aminoacyl_C: D-amin 45.2 8.6 0.00019 24.6 0.4 18 102-119 4-21 (48)
16 cd00780 NTF2 Nuclear transport 44.3 15 0.00032 25.7 1.5 52 78-130 5-57 (119)
17 PF14534 DUF4440: Domain of un 42.5 11 0.00023 23.9 0.5 30 98-127 20-49 (107)
18 PRK09636 RNA polymerase sigma 37.6 49 0.0011 26.7 3.7 55 79-133 173-235 (293)
19 PF02375 JmjN: jmjN domain; I 31.9 4.8 0.0001 24.8 -2.3 25 106-131 8-32 (34)
20 PF13577 SnoaL_4: SnoaL-like d 30.4 25 0.00054 23.4 0.8 33 98-130 28-63 (127)
21 KOG4457 Uncharacterized conser 25.0 47 0.001 28.0 1.7 31 96-126 53-85 (202)
22 KOG0715 Molecular chaperone (D 23.7 59 0.0013 27.5 2.1 21 116-136 55-75 (288)
23 PF14658 EF-hand_9: EF-hand do 23.1 1.1E+02 0.0023 21.4 3.0 57 68-126 5-66 (66)
24 PF00788 RA: Ras association ( 22.8 1E+02 0.0023 19.9 2.7 51 77-127 27-79 (93)
25 PF10984 DUF2794: Protein of u 20.0 68 0.0015 23.7 1.5 27 79-105 4-30 (85)
No 1
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=97.26 E-value=0.00029 Score=50.72 Aligned_cols=55 Identities=16% Similarity=0.349 Sum_probs=42.1
Q ss_pred hhchHHHHHHHhCCCCCccccccccCCCcccCcccccccHHHHHHH---HHhhhh-hccccc
Q 032367 79 SDDIMPHILNLYGSCATSHDFEIYAPHASFEDPLMCAHGVKQIKSA---FYAISK-VGQEAS 136 (142)
Q Consensus 79 ~~~Il~~IleLYsc~PT~edFeiYApdAtFEDPl~~A~Gv~qIksQ---FYgLPK-vFseSe 136 (142)
.+.+-.++-.+|.+. -+++||++|..|.||+..-+|+..++.. .-.|-. .|++++
T Consensus 4 ~~~Lr~D~~~~f~~~---~~~~iY~~dv~F~Dp~~~f~g~~~Y~~~~~~l~~l~~~~~~~~~ 62 (113)
T PF10184_consen 4 IRTLREDLPRFFTGD---LDYSIYDEDVVFIDPIVSFKGLDRYKRNLWALRFLGRLFFSDPS 62 (113)
T ss_pred HHHHHHHHHHHhcCC---CChhhcCCCeEEECCCCceecHHHHHHHHHHHHHHHhhccCCcE
Confidence 345677888899444 5688999999999999999999999999 444444 344443
No 2
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=95.53 E-value=0.014 Score=39.68 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=42.5
Q ss_pred chHHHHHHHhCCCCCccccccccCCCcccCcccc--cccHHHHHHHHHhhhhhccc
Q 032367 81 DIMPHILNLYGSCATSHDFEIYAPHASFEDPLMC--AHGVKQIKSAFYAISKVGQE 134 (142)
Q Consensus 81 ~Il~~IleLYsc~PT~edFeiYApdAtFEDPl~~--A~Gv~qIksQFYgLPKvFse 134 (142)
.++....+.++..-...-.++|++|++|+||.+. ..|+..|+.-|-.+...+..
T Consensus 7 ~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~~~~ 62 (122)
T cd00781 7 AAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGGAKR 62 (122)
T ss_pred HHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhccCce
Confidence 4666677777666666667789999999999765 89999999999988775543
No 3
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=95.31 E-value=0.0046 Score=38.87 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=37.9
Q ss_pred HHhCCCCCccccccccCCCcccCcccccccHHHHHHHHHhhhhhcccccc
Q 032367 88 NLYGSCATSHDFEIYAPHASFEDPLMCAHGVKQIKSAFYAISKVGQEASQ 137 (142)
Q Consensus 88 eLYsc~PT~edFeiYApdAtFEDPl~~A~Gv~qIksQFYgLPKvFseSei 137 (142)
+.++..--..-.+.|+||++|+||.....|+.+|++.|-.+-+.|++.+.
T Consensus 6 ~a~~~~d~~~i~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 55 (102)
T PF12680_consen 6 EAWNAGDLDAIAALFAPDAVFHDPGGTLRGREAIREFFEEFFESFPDIRF 55 (102)
T ss_dssp HHHHTTHHHHHHHTEEEEEEEEETTSEEESHHHHHHHHHHHHHHEEEEEE
T ss_pred HHHHcCCHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHhcCCceEE
Confidence 33333333445678999999999977889999999999988887765543
No 4
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=93.41 E-value=0.086 Score=35.90 Aligned_cols=55 Identities=9% Similarity=0.136 Sum_probs=39.6
Q ss_pred chHHHHHHHhCCCCCccccccccCCCcccCccc--ccccHHHHHHHHHhhhhhcccc
Q 032367 81 DIMPHILNLYGSCATSHDFEIYAPHASFEDPLM--CAHGVKQIKSAFYAISKVGQEA 135 (142)
Q Consensus 81 ~Il~~IleLYsc~PT~edFeiYApdAtFEDPl~--~A~Gv~qIksQFYgLPKvFseS 135 (142)
.|+....+.++.+--..-.++|+||++|+||.. .-.|+..|+.-|-.+-+.++.-
T Consensus 2 ~iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 58 (129)
T TIGR02096 2 ELAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRTAFPDL 58 (129)
T ss_pred HHHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHHhCchh
Confidence 356666666666666677788999999999975 3466999986665666666544
No 5
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=89.05 E-value=0.54 Score=31.56 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=36.4
Q ss_pred hHHHHHHHhCCCCCccccccccCCCcccCccc-ccccHHHHHHHHHhhhhhcc
Q 032367 82 IMPHILNLYGSCATSHDFEIYAPHASFEDPLM-CAHGVKQIKSAFYAISKVGQ 133 (142)
Q Consensus 82 Il~~IleLYsc~PT~edFeiYApdAtFEDPl~-~A~Gv~qIksQFYgLPKvFs 133 (142)
++....+.+..+--.+-.++|++||+|.++.+ ..+|+.+|++.|-.+-..++
T Consensus 9 l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~g~~~~G~~~i~~~~~~~~~~~~ 61 (128)
T TIGR02246 9 LVATWEAAWAAGDAEGFADLFTPDGVFVTVPGQVWKGREAIAAAHEAFLAGPY 61 (128)
T ss_pred HHHHHHHHHHcCCHHHHHHhhCCCceEECCCCCeecCHHHHHHHHHHHhcccC
Confidence 44455555555555567778999999985544 67999999998876554443
No 6
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=87.92 E-value=0.39 Score=33.09 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=46.6
Q ss_pred hHHHHHHHhCCCCCccccccccCCCcccCcc-cccccHHHHHHHHHhhhhhcccccc
Q 032367 82 IMPHILNLYGSCATSHDFEIYAPHASFEDPL-MCAHGVKQIKSAFYAISKVGQEASQ 137 (142)
Q Consensus 82 Il~~IleLYsc~PT~edFeiYApdAtFEDPl-~~A~Gv~qIksQFYgLPKvFseSei 137 (142)
+++...++++.+--..--++|+||.++++|. ....|+..+++.+-.+-..|++.+.
T Consensus 3 v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~~~~~G~~~~~~~~~~~~~afPD~~~ 59 (126)
T PF07366_consen 3 VRRFYEEVWNRGDLDALDELVAPDVVFHDPGPGPPVGREGFKEFLKELRAAFPDLRF 59 (126)
T ss_dssp HHHHHHHHHHTT-GCHHHGTEEEEEEEEGCTTTEEEHHHHHHHHHHHHHHHSTTTEE
T ss_pred HHHHHHHHHhCCCHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 5666777887776667777899999999997 7999999999999999999987654
No 7
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=85.23 E-value=1.1 Score=35.94 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=46.0
Q ss_pred cchhchHHHHHHHhCCCCCccccccccCCCcccCcccc--cccHHHHHHHHHhh--hhhcc
Q 032367 77 RISDDIMPHILNLYGSCATSHDFEIYAPHASFEDPLMC--AHGVKQIKSAFYAI--SKVGQ 133 (142)
Q Consensus 77 ~~~~~Il~~IleLYsc~PT~edFeiYApdAtFEDPl~~--A~Gv~qIksQFYgL--PKvFs 133 (142)
.....+++...+-++..-...-.++++||++|++|.+. -.|...|+.-|-++ ...|.
T Consensus 204 ~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~ 264 (324)
T TIGR02960 204 PEEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGAA 264 (324)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccCC
Confidence 34566788888888888888888999999999999854 88999999877777 44443
No 8
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=74.60 E-value=1.6 Score=29.71 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=37.4
Q ss_pred hHHHHHHHhCC-CCCccccccccCCCcccCcccc--cccHHHHHHHHHhhhhh
Q 032367 82 IMPHILNLYGS-CATSHDFEIYAPHASFEDPLMC--AHGVKQIKSAFYAISKV 131 (142)
Q Consensus 82 Il~~IleLYsc-~PT~edFeiYApdAtFEDPl~~--A~Gv~qIksQFYgLPKv 131 (142)
.++.--++|.. +| ..--.+|++++++.++.+. ..|+..|...|-.||+.
T Consensus 5 Fv~~Yy~~~d~~~~-~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~~ 56 (118)
T PF02136_consen 5 FVQQYYQLFDSGDR-EGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPAT 56 (118)
T ss_dssp HHHHHHHHHHHTHG-GGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHccCCH-HHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCCc
Confidence 34444455555 33 3345679999999999998 99999999999999986
No 9
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=72.98 E-value=3.8 Score=25.88 Aligned_cols=48 Identities=19% Similarity=0.213 Sum_probs=32.7
Q ss_pred hHHHHHHHhCCCCCcccc-ccccCCCcccCcc-----cccccHHHHHHHHHhhhh
Q 032367 82 IMPHILNLYGSCATSHDF-EIYAPHASFEDPL-----MCAHGVKQIKSAFYAISK 130 (142)
Q Consensus 82 Il~~IleLYsc~PT~edF-eiYApdAtFEDPl-----~~A~Gv~qIksQFYgLPK 130 (142)
++.+--+++. ....+.+ .+|+++|+|+.|. ....|..+|+..|-.++.
T Consensus 4 l~~~y~~~ld-~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~ 57 (124)
T cd00531 4 FLYRYARLLD-AGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPF 57 (124)
T ss_pred HHHHHHHHhC-CchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCC
Confidence 3344444444 2223333 3699999999998 567899999999988775
No 10
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=65.16 E-value=6.6 Score=30.92 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=38.8
Q ss_pred HHhCCCCCccccccccCCCcccCcc-cccccHHHHHHHHHhhhhhcc
Q 032367 88 NLYGSCATSHDFEIYAPHASFEDPL-MCAHGVKQIKSAFYAISKVGQ 133 (142)
Q Consensus 88 eLYsc~PT~edFeiYApdAtFEDPl-~~A~Gv~qIksQFYgLPKvFs 133 (142)
..+..+--..-++.|++||+|=||. ...+|...|+..|-++--.|.
T Consensus 21 ~Av~a~D~~av~~~YtdDav~f~~~~~~~~Gk~~i~k~~~~~~~~~~ 67 (137)
T COG4319 21 AAVRAKDADAVADFYTDDAVVFPPPGLQRKGKAAIRKAFEGIFAMGI 67 (137)
T ss_pred HHHhcccHHHHHHhcCCceEEecCCCCcccCHHHHHHHHHHHHHhcc
Confidence 4666676677788899999999997 899999999999998876664
No 11
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=56.94 E-value=9.9 Score=30.97 Aligned_cols=51 Identities=8% Similarity=0.128 Sum_probs=41.6
Q ss_pred chhchHHHHHHHhCCCCCccccccccCCCcccCcccc--cccHHHHHHHHHhh
Q 032367 78 ISDDIMPHILNLYGSCATSHDFEIYAPHASFEDPLMC--AHGVKQIKSAFYAI 128 (142)
Q Consensus 78 ~~~~Il~~IleLYsc~PT~edFeiYApdAtFEDPl~~--A~Gv~qIksQFYgL 128 (142)
-...++....+-++..-...-.++++||+++++|-.- ..|...++.-|-++
T Consensus 215 ~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~ 267 (339)
T PRK08241 215 EERALLARYVAAFEAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQ 267 (339)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhh
Confidence 3456777777888877778888899999999999865 88999998777675
No 12
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=48.38 E-value=7.4 Score=25.54 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=34.8
Q ss_pred chHHHHHHHhCCCCCccccccccCCCcccCc--ccccccHHHHHHHHHhh
Q 032367 81 DIMPHILNLYGSCATSHDFEIYAPHASFEDP--LMCAHGVKQIKSAFYAI 128 (142)
Q Consensus 81 ~Il~~IleLYsc~PT~edFeiYApdAtFEDP--l~~A~Gv~qIksQFYgL 128 (142)
.+++.+.+=|..+--..-+++|+||+++-++ -....|..+|++-|-..
T Consensus 3 ~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~ 52 (121)
T PF13474_consen 3 ALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERD 52 (121)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHH
Confidence 3555666666666667777889999999774 45778999999888663
No 13
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.45 E-value=4 Score=41.55 Aligned_cols=60 Identities=28% Similarity=0.460 Sum_probs=44.2
Q ss_pred cccCCccchhchHHHHH--------HHhCCCCCccccccccCCCcccCcccccccHHHHHHHHHhhhhh
Q 032367 71 ELTSSKRISDDIMPHIL--------NLYGSCATSHDFEIYAPHASFEDPLMCAHGVKQIKSAFYAISKV 131 (142)
Q Consensus 71 ~~~~~~~~~~~Il~~Il--------eLYsc~PT~edFeiYApdAtFEDPl~~A~Gv~qIksQFYgLPKv 131 (142)
+..+..|++++++++-+ .||-.+.=++.|-||||+|-|.|+ ..-+=-.-|-+||+||--+
T Consensus 42 ~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~-~lkdIf~~~~~q~~gL~d~ 109 (1266)
T KOG1525|consen 42 DLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDE-QLKDIFQLILSQFSGLGDV 109 (1266)
T ss_pred hHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHH-HHHHHHHHHHHHHhhccCC
Confidence 45566788888887643 466666678899999999999999 4334445578999998543
No 14
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=45.22 E-value=5.9 Score=25.33 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=24.2
Q ss_pred CCcccCcccccccHHHHHHHHHhhhhhccccc
Q 032367 105 HASFEDPLMCAHGVKQIKSAFYAISKVGQEAS 136 (142)
Q Consensus 105 dAtFEDPl~~A~Gv~qIksQFYgLPKvFseSe 136 (142)
..-|.||+.+..-+..+ +.=||+.|+-+...
T Consensus 9 ~eEF~Dp~~yi~~i~~~-~~~yGi~KIvPP~~ 39 (42)
T smart00545 9 MEEFKDPLAYISKIRPQ-AEKYGICKVVPPKS 39 (42)
T ss_pred HHHHHCHHHHHHHHHHH-HhhCCEEEEECCCC
Confidence 34588999999999886 77789998765443
No 15
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=45.21 E-value=8.6 Score=24.56 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=8.6
Q ss_pred ccCCCcccCcccccccHH
Q 032367 102 YAPHASFEDPLMCAHGVK 119 (142)
Q Consensus 102 YApdAtFEDPl~~A~Gv~ 119 (142)
....|+|+||.-.+.|+.
T Consensus 4 i~D~at~~~p~~~~~GI~ 21 (48)
T PF07908_consen 4 IRDRATYEDPNQPAEGID 21 (48)
T ss_dssp -B----SSSTT---BSEE
T ss_pred EEecCccccccccCCCEE
Confidence 467899999999999974
No 16
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=44.28 E-value=15 Score=25.73 Aligned_cols=52 Identities=6% Similarity=0.133 Sum_probs=39.3
Q ss_pred chhchHHHHHHHhCCCCCccccccccCCCcccCcc-cccccHHHHHHHHHhhhh
Q 032367 78 ISDDIMPHILNLYGSCATSHDFEIYAPHASFEDPL-MCAHGVKQIKSAFYAISK 130 (142)
Q Consensus 78 ~~~~Il~~IleLYsc~PT~edFeiYApdAtFEDPl-~~A~Gv~qIksQFYgLPK 130 (142)
++...++.--++|..+|. +-..+|.++|.|-=+- ..+.|..+|...+-.||.
T Consensus 5 v~~~Fv~~YY~~l~~~~~-~L~~fY~~~s~~~~~~~~~~~g~~~I~~~l~~lp~ 57 (119)
T cd00780 5 VAKAFVQQYYSIFDNNRE-GLHRLYGDTSMLSREGMKQVTGRDAIVEKLSSLPF 57 (119)
T ss_pred HHHHHHHHHHHHHhcCHH-HHHhhcCCCcEEEECCceEecCHHHHHHHHHhCCC
Confidence 445566666677774433 3356799999998777 788899999999999993
No 17
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=42.47 E-value=11 Score=23.94 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=24.8
Q ss_pred ccccccCCCcccCcccccccHHHHHHHHHh
Q 032367 98 DFEIYAPHASFEDPLMCAHGVKQIKSAFYA 127 (142)
Q Consensus 98 dFeiYApdAtFEDPl~~A~Gv~qIksQFYg 127 (142)
-.++|+||++|-.|-+...|+.++-+.|-.
T Consensus 20 ~~~~~~~d~~~~~~~g~~~~~~~~l~~~~~ 49 (107)
T PF14534_consen 20 LASLYADDFVFVGPGGTILGKEAILAAFKS 49 (107)
T ss_dssp HHTTEEEEEEEEETTSEEEEHHHHHHHHHH
T ss_pred HHhhhCCCEEEECCCCCEeCHHHHHHHHhh
Confidence 345688999999888888899999988876
No 18
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=37.63 E-value=49 Score=26.73 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=43.9
Q ss_pred hhchHHHHHHHhCCCCCccccccccCCCccc-Cc-------ccccccHHHHHHHHHhhhhhcc
Q 032367 79 SDDIMPHILNLYGSCATSHDFEIYAPHASFE-DP-------LMCAHGVKQIKSAFYAISKVGQ 133 (142)
Q Consensus 79 ~~~Il~~IleLYsc~PT~edFeiYApdAtFE-DP-------l~~A~Gv~qIksQFYgLPKvFs 133 (142)
...++....+-++..-...-.+++++|++|. |. +....|...|++-|-++...|.
T Consensus 173 ~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~ 235 (293)
T PRK09636 173 GAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYG 235 (293)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhcc
Confidence 4567888888888877777788899999998 54 2335899999999999988765
No 19
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=31.86 E-value=4.8 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=17.6
Q ss_pred CcccCcccccccHHHHHHHHHhhhhh
Q 032367 106 ASFEDPLMCAHGVKQIKSAFYAISKV 131 (142)
Q Consensus 106 AtFEDPl~~A~Gv~qIksQFYgLPKv 131 (142)
.-|+||+.+..-+..... =|||.|+
T Consensus 8 eEF~dp~~yi~~i~~~g~-~~Gi~KI 32 (34)
T PF02375_consen 8 EEFKDPIKYISSIEPEGE-KYGICKI 32 (34)
T ss_dssp HHHS-HHHHHHHHHHTTG-GGSEEEE
T ss_pred HHHhCHHHHHHHHHHHHH-HCCEEEe
Confidence 348899999887777554 6777775
No 20
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=30.44 E-value=25 Score=23.41 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=26.6
Q ss_pred ccccccCCCcccCcc---cccccHHHHHHHHHhhhh
Q 032367 98 DFEIYAPHASFEDPL---MCAHGVKQIKSAFYAISK 130 (142)
Q Consensus 98 dFeiYApdAtFEDPl---~~A~Gv~qIksQFYgLPK 130 (142)
--++|++||+|.=+- +...|+..|.+.+-+...
T Consensus 28 ~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~ 63 (127)
T PF13577_consen 28 WADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFD 63 (127)
T ss_dssp HHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHH
T ss_pred HHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcc
Confidence 346699999998773 689999999999887643
No 21
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.99 E-value=47 Score=28.04 Aligned_cols=31 Identities=23% Similarity=0.545 Sum_probs=26.1
Q ss_pred ccccccccCCCcccCcccc--cccHHHHHHHHH
Q 032367 96 SHDFEIYAPHASFEDPLMC--AHGVKQIKSAFY 126 (142)
Q Consensus 96 ~edFeiYApdAtFEDPl~~--A~Gv~qIksQFY 126 (142)
.-||++|.+|-+|+|-+.- -.|++++-++|-
T Consensus 53 ~~DYS~Ys~dvvf~n~I~~v~t~G~~~y~~~~~ 85 (202)
T KOG4457|consen 53 RMDYSFYSKDVVFDNQIFSVETRGIEQYMSHFG 85 (202)
T ss_pred cccceeecCCeEEeecccceeehhHHHHHHHHH
Confidence 4689999999999999975 568888888874
No 22
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.71 E-value=59 Score=27.54 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHhhhhhccccc
Q 032367 116 HGVKQIKSAFYAISKVGQEAS 136 (142)
Q Consensus 116 ~Gv~qIksQFYgLPKvFseSe 136 (142)
.-..+||++||.|.|.++.-.
T Consensus 55 At~~EIK~Af~~LaKkyHPD~ 75 (288)
T KOG0715|consen 55 ATLSEIKSAFRKLAKKYHPDV 75 (288)
T ss_pred CCHHHHHHHHHHHHHhhCCCC
Confidence 347899999999999998543
No 23
>PF14658 EF-hand_9: EF-hand domain
Probab=23.11 E-value=1.1e+02 Score=21.39 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=43.0
Q ss_pred ccccccCCccchhchHHHHHHHhCC-CCCccccc----cccCCCcccCcccccccHHHHHHHHH
Q 032367 68 EACELTSSKRISDDIMPHILNLYGS-CATSHDFE----IYAPHASFEDPLMCAHGVKQIKSAFY 126 (142)
Q Consensus 68 Ea~~~~~~~~~~~~Il~~IleLYsc-~PT~edFe----iYApdAtFEDPl~~A~Gv~qIksQFY 126 (142)
++||.+..+.+.-.=|..++.==++ .|+..+++ .+.|++. |+-....|---|=++||
T Consensus 5 ~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~--~~~v~~d~F~~iM~~wi 66 (66)
T PF14658_consen 5 DAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGR--DGSVNFDTFLAIMRDWI 66 (66)
T ss_pred hhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCC--CceEeHHHHHHHHHHhC
Confidence 5677777777766666667776777 88887765 3678887 88888888888888886
No 24
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=22.77 E-value=1e+02 Score=19.91 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=43.3
Q ss_pred cchhchHHHHHHHhCCCCCcccccc--ccCCCcccCcccccccHHHHHHHHHh
Q 032367 77 RISDDIMPHILNLYGSCATSHDFEI--YAPHASFEDPLMCAHGVKQIKSAFYA 127 (142)
Q Consensus 77 ~~~~~Il~~IleLYsc~PT~edFei--YApdAtFEDPl~~A~Gv~qIksQFYg 127 (142)
--+..|+..+++=|+-..+..+|.+ +......+-+|.--+=.-.|..+|-.
T Consensus 27 tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~pl~i~~~~~~ 79 (93)
T PF00788_consen 27 TTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECPLQIQLQWPK 79 (93)
T ss_dssp SBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCchHHHHHhCcc
Confidence 3466799999999999999999999 68888888888888888888888865
No 25
>PF10984 DUF2794: Protein of unknown function (DUF2794); InterPro: IPR021252 This is a bacterial family of proteins with unknown function.
Probab=20.03 E-value=68 Score=23.67 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=21.5
Q ss_pred hhchHHHHHHHhCCCCCccccccccCC
Q 032367 79 SDDIMPHILNLYGSCATSHDFEIYAPH 105 (142)
Q Consensus 79 ~~~Il~~IleLYsc~PT~edFeiYApd 105 (142)
+++=|..|++||+..+....+-.||=+
T Consensus 4 ~R~EL~~iL~lYGrmVa~GeWRDYai~ 30 (85)
T PF10984_consen 4 DRRELDQILRLYGRMVAAGEWRDYAID 30 (85)
T ss_pred cHHHHHHHHHHhCcceeccchhhhhcc
Confidence 445588999999999999888777643
Done!