BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032368
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDE 90
+E D A K +++ V+V + C C+ VK LL G + V E+ + + + L
Sbjct: 4 QELDAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQ- 62
Query: 91 LSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGA 139
S + G G + P VF+GGK GG D V+ H +L+P+L++A A
Sbjct: 63 -SALAHWTGRGTV--PNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDE 90
+E D A K +++ V+V + C C+ VK LL G + V E+ + + + L
Sbjct: 5 QELDAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQ- 63
Query: 91 LSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGA 139
S + G G + P VF+GGK GG D V+ H +L+P+L++A A
Sbjct: 64 -SALAHWTGRGTV--PNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 39 SVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVEN 98
+V+K + EN V+V + C VK+L V+P V E+ DE + +E
Sbjct: 10 AVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVEL---DELGAQGPQIQKVLER 66
Query: 99 GGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGA 139
G P VF+GGK GG + + G+L P+L EA A
Sbjct: 67 LTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 38 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVAD-GDEAAVLDELSRIDV 96
+S+ K + EN V++ + C C VKTL GV P V E+ G + L ++ +
Sbjct: 10 ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKV----L 65
Query: 97 ENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAG 138
E G P VFV GK GG + + GDL +L EA
Sbjct: 66 ERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEAN 107
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV 108
V++ RPGC C K LL G A F D A+ EL R +++ G FP +
Sbjct: 8 VIIYTRPGCPYCARAKALLARKG---AEFNEID---ASATPEL-RAEMQERSGRNTFPQI 60
Query: 109 FVGGKLFGGLDRVMATHISGDLVPILK 135
F+G GG D + A G L +LK
Sbjct: 61 FIGSVHVGGCDDLYALEDEGKLDSLLK 87
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 13/109 (11%)
Query: 36 AAKSVEKMLVENAVLVL-----GRPGCCMCHVVKTLLLGHGV-NPAVFEVADGDEAAVLD 89
+A+ ++ ++ ++ V+V +P C + V +L HGV + A + V D E
Sbjct: 9 SAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPEL---- 64
Query: 90 ELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAG 138
R +++ P V++ G+ GG D ++ H +GDLV LK+ G
Sbjct: 65 ---RQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 110
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 32 EADTAAKSV-EKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDE 90
+ADT K + + V+ ++ + +PGC C K LL G+ + E+ G +A +
Sbjct: 154 DADTXLKYLAPQHQVQESISIFTKPGCPFCAKAKQLLHDKGL--SFEEIILGHDATI--- 208
Query: 91 LSRIDVENGGGIIQFPAVFVGGKLFGGLD 119
+ V G P VF+GGK GG D
Sbjct: 209 ---VSVRAVSGRTTVPQVFIGGKHIGGSD 234
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 19 GNTSSARGGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFE 78
NTSS+ + A +++ + +N V++ + C C + K L VN V E
Sbjct: 25 SNTSSS----LENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVE 80
Query: 79 V---ADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILK 135
+ G++ D L ++ G P +FV G GG H G L+P++
Sbjct: 81 LDLLEYGNQFQ--DALYKM-----TGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133
Query: 136 E 136
+
Sbjct: 134 Q 134
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 33 ADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEV---ADGDEAAVLD 89
A +++ + +N V++ + C C + K L VN V E+ G++ D
Sbjct: 13 ATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQ--D 70
Query: 90 ELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEA 137
L ++ E P +FV G GG H G L+P++ +
Sbjct: 71 ALYKMTGERT-----VPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 113
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 39 SVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEV---ADGDEAAVLDELSRID 95
+++ + +N V++ + C C + K L VN V E+ G++ D L ++
Sbjct: 27 QIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQ--DALYKMT 84
Query: 96 VENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEA 137
E P +FV G GG H G L+P++ +
Sbjct: 85 GERT-----VPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 121
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV 108
V + + C CH K LL GV+ + DG+ A + + R G P +
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPI-DGNAAKREEMIKR------SGRTTVPQI 55
Query: 109 FVGGKLFGGLDRVMATHISGDLVPILK 135
F+ + GG D + A G L P+LK
Sbjct: 56 FIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV 108
+++ RP C C + LL GV + D D + L + V+ G FP +
Sbjct: 8 IILYTRPNCPYCKRARDLLDKKGV-----KYTDIDASTSLRQEM---VQRANGRNTFPQI 59
Query: 109 FVGGKLFGGLDRVMATHISGDLVPILKE 136
F+G GG D + A G L +L++
Sbjct: 60 FIGDYHVGGCDDLYALENKGKLDSLLQD 87
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVAD----GDEAAVLDELSRIDVENGGGIIQ 104
V+V +P C C + LL + E D D + D L ++ G
Sbjct: 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT-----GART 68
Query: 105 FPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGAL 140
P VF+G + GG + + H G+L+ L++ GA+
Sbjct: 69 VPRVFIGKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV 108
V+V +P C C + +L + + E D +E+ ++ G P V
Sbjct: 15 VVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY-LQQLTGARTVPRV 73
Query: 109 FVGGKLFGGLDRVMATHISGDLVPILKEAGAL 140
F+G GG +++ SG+L+ LK+ GAL
Sbjct: 74 FIGKDCIGGCSDLVSLQQSGELLTRLKQIGAL 105
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 16/92 (17%)
Query: 55 PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQF------PAV 108
P C LL GV+PA F + VL+ D E GI +F P +
Sbjct: 29 PKCGFSRATIGLLGNQGVDPAKFAAYN-----VLE-----DPELREGIKEFSEWPTIPQL 78
Query: 109 FVGGKLFGGLDRVMATHISGDLVPILKEAGAL 140
+V + GG D + + SG+L +L+EA AL
Sbjct: 79 YVNKEFIGGCDVITSMARSGELADLLEEAQAL 110
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 57 CCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFG 116
C + +L GV F++ + DE R ++ +P ++V G L G
Sbjct: 30 CGFSKQILEILNSTGVEYETFDILE-------DEEVRQGLKTFSNWPTYPQLYVRGDLVG 82
Query: 117 GLDRVMATHISGDLVPILK 135
GLD V +G+L+PILK
Sbjct: 83 GLDIVKELKDNGELLPILK 101
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 35 TAAKSVEKMLVENAVLVL--GRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELS 92
T + +++ + EN +L+ G P C G A G+ A +D L
Sbjct: 3 TTIEKIQRQIAENPILLYMKGSPKLPSC--------GFSAQAVQALAACGERFAYVDILQ 54
Query: 93 RIDVE----NGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGA 139
D+ FP ++V G+L GG D V+ + G+L ++KE A
Sbjct: 55 NPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAA 105
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 57 CCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFG 116
C + +L GV F++ + DE R ++ +P ++V G+L G
Sbjct: 32 CGFSKQILEILNSTGVEYETFDILE-------DEEVRQGLKAYSNWPTYPQLYVKGELVG 84
Query: 117 GLDRVMATHISGDLVPILK 135
GLD V +G+L+PIL+
Sbjct: 85 GLDIVKELKENGELLPILR 103
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 35 TAAKSVEKMLVENAVLVL--GRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELS 92
T + +++ + EN +L+ G P C G A G+ A +D L
Sbjct: 23 TTIEKIQRQIAENPILLYMKGSPKLPSC--------GFSAQAVQALAACGERFAYVDILQ 74
Query: 93 RIDVE----NGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALW 141
D+ FP ++V G+L GG D V+ + G+L ++KE A +
Sbjct: 75 NPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 127
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 24/115 (20%)
Query: 33 ADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELS 92
AD ++ + K + AV++ + C C VK +L + A E LD+LS
Sbjct: 4 ADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIE---------LDQLS 54
Query: 93 RIDVENGGGIIQ----------FPAVFVGGKLFGGLDRVMATHISGDLVPILKEA 137
NG I + P +FV GK G V+ + + +L I+ E+
Sbjct: 55 -----NGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 24/115 (20%)
Query: 33 ADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELS 92
AD ++ + K + AV++ + C C VK +L + A E LD+LS
Sbjct: 4 ADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIE---------LDQLS 54
Query: 93 RIDVENGGGIIQ----------FPAVFVGGKLFGGLDRVMATHISGDLVPILKEA 137
NG I + P +FV GK G V+ + + +L I+ E+
Sbjct: 55 -----NGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 33.5 bits (75), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV 108
V + + C H K LL GV+ + DG+ A + + R G P +
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQELPI-DGNAAKREEMIKR------SGRTTVPQI 55
Query: 109 FVGGKLFGGLDRVMATHISGDLVPILK 135
F+ + GG D + A G L P+LK
Sbjct: 56 FIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 24/115 (20%)
Query: 33 ADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELS 92
AD ++ + K + AV++ + C C VK +L + A E LD+LS
Sbjct: 4 ADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIE---------LDQLS 54
Query: 93 RIDVENGGGIIQ----------FPAVFVGGKLFGGLDRVMATHISGDLVPILKEA 137
NG I + P +FV GK G V+ + + +L I+ E+
Sbjct: 55 -----NGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 32.3 bits (72), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 36 AAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRID 95
A + V + V+V +P C + +L + + E D +E+
Sbjct: 1 AQEFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDY- 59
Query: 96 VENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKEAGALW 141
++ G P VF+G GG +++ SG+L+ LK+ GAL
Sbjct: 60 LQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGALQ 105
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 44 LVENA-VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGI 102
L+E + V++ + C VK L GV V E+ D+ A + E+ ++ N +
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLS-EITNQKTV 71
Query: 103 IQFPAVFVGGKLFGGLDRVMATHISGDLVPILKE 136
P +FV GG D+ + SG L +L+E
Sbjct: 72 ---PNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 102
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 89 DELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDL 130
+EL R ++ FP +++ G+ FGG D + + SG+L
Sbjct: 58 NELLRQGLKEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGEL 99
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 89 DELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDL 130
+E+ R ++ FP +++GG+ FGG D + +G+L
Sbjct: 58 NEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGEL 99
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 54 RPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGK 113
P C + +L H + + F++ +E R ++ +P ++V G+
Sbjct: 28 EPRCGFSKQMVEILHKHNIQFSSFDIFSDEEV-------RQGLKAYSSWPTYPQLYVSGE 80
Query: 114 LFGGLDRVMATHISGDLVPILKEAG 138
L GGLD + S +L I +A
Sbjct: 81 LIGGLDIIKELEASEELDTICPKAA 105
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 38 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPA----VFEVADGDEAAVLDELSR 93
K V+ ++ EN + V + C CH L P V ++ D E A D +
Sbjct: 16 KHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGA--DIQAA 73
Query: 94 IDVENGGGIIQFPAVFVGGKLFGGLD 119
+ NG + P +++ GK GG D
Sbjct: 74 LYEINGQRTV--PNIYINGKHIGGND 97
>pdb|1W1Z|A Chain A, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|1W1Z|B Chain B, Structure Of The Plant Like 5-Amino Laevulinic Acid
Dehydratase From Chlorobium Vibrioforme
pdb|2C1H|A Chain A, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
pdb|2C1H|B Chain B, The X-Ray Structure Of Chlorobium Vibrioforme 5-
Aminolaevulinic Acid Dehydratase Complexed With A Diacid
Inhibitor
Length = 328
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 6 PYRTYIHGPAVAAGNTSSARGGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKT 65
P+R +H ++ TEEA K VE +VE A +V+ +PG +V
Sbjct: 208 PFRDALHSAPQFGDKSTYQMNPANTEEA---MKEVELDIVEGADIVMVKPGLAYLDIVWR 264
Query: 66 LLLGHGVNPAVFEVA 80
V A++ V+
Sbjct: 265 TKERFDVPVAIYHVS 279
>pdb|3GCZ|A Chain A, Yokose Virus Methyltransferase In Complex With Adomet
Length = 282
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 18/20 (90%)
Query: 87 VLDELSRIDVENGGGIIQFP 106
+++ELSR+ +++GGG+++ P
Sbjct: 209 IMEELSRLQLKHGGGLVRVP 228
>pdb|1ONI|A Chain A, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|B Chain B, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|C Chain C, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|D Chain D, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|E Chain E, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|F Chain F, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|G Chain G, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|H Chain H, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
pdb|1ONI|I Chain I, Crystal Structure Of A Human P14.5, A Translational
Inhibitor Reveals Different Mode Of Ligand Binding Near
The Invariant Residues Of The Yjgf/uk114 Protein Family
Length = 138
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 21/84 (25%)
Query: 27 GGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVN------------- 73
GGV EEA A K++ + +L GC +VVKT +L +N
Sbjct: 50 GGVAEEAKQALKNMGE--------ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYF 101
Query: 74 PAVFEVADGDEAAVLDELSRIDVE 97
+ F + A L + SRI++E
Sbjct: 102 KSNFPARAAYQVAALPKGSRIEIE 125
>pdb|1QAH|A Chain A, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
pdb|1QAH|B Chain B, Crystal Structure Of Perchloric Acid Soluble Protein-A
Translational Inhibitor
Length = 136
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 27 GGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVN 73
GGV EEA A K++ + +L GC +VVKT +L +N
Sbjct: 48 GGVAEEAKQALKNLGE--------ILKAAGCDFTNVVKTTVLLADIN 86
>pdb|1A56|A Chain A, Primary Sequence And Solution Conformation Of
Ferricytochrome C-552 From Nitrosomonas Europaea, Nmr,
Mean Structure Refined With Explicit Hydrogen Bond
Constraints
pdb|1A8C|A Chain A, Primary Sequence And Solution Conformation Of
Ferrocytochrome C-552 From Nitrosomonas Europaea, Nmr,
Mean Structure Refined Without Hydrogen Bond
Constraints
Length = 81
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 54 RPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAV 87
+ C CH V+T ++G + + AD D+AA
Sbjct: 7 KNNCIACHQVETKVVGPALKDIAAKYADKDDAAT 40
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 38 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPA----VFEVADGDEAAVLDELSR 93
K V+ ++ EN + V + C H L P V ++ D E A D +
Sbjct: 8 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGA--DIQAA 65
Query: 94 IDVENGGGIIQFPAVFVGGKLFGGLD 119
+ NG + P +++ GK GG D
Sbjct: 66 LYEINGQRTV--PNIYINGKHIGGND 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,346,542
Number of Sequences: 62578
Number of extensions: 165201
Number of successful extensions: 392
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 39
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)