Query 032368
Match_columns 142
No_of_seqs 198 out of 1058
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 13:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 5.9E-31 1.3E-35 180.0 11.0 98 40-142 1-99 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 1.5E-29 3.2E-34 175.6 12.4 100 36-140 2-105 (108)
3 KOG1752 Glutaredoxin and relat 100.0 1.7E-29 3.6E-34 174.0 12.2 102 35-141 2-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 3.7E-29 8.1E-34 175.2 11.6 100 35-141 3-107 (115)
5 TIGR00365 monothiol glutaredox 99.9 1.1E-26 2.4E-31 158.2 10.2 91 37-134 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 1.1E-24 2.3E-29 146.4 9.1 85 40-131 1-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.9 1.3E-23 2.9E-28 160.2 12.0 96 34-136 100-200 (204)
8 PRK10638 glutaredoxin 3; Provi 99.9 2.2E-23 4.7E-28 137.7 9.3 83 46-135 1-83 (83)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 6.6E-23 1.4E-27 133.7 7.8 79 49-134 1-79 (79)
10 TIGR02180 GRX_euk Glutaredoxin 99.9 3.5E-22 7.6E-27 130.5 9.1 81 49-134 1-84 (84)
11 COG0278 Glutaredoxin-related p 99.9 7.3E-22 1.6E-26 133.5 10.5 97 35-138 3-105 (105)
12 COG0695 GrxC Glutaredoxin and 99.9 8.3E-22 1.8E-26 129.9 9.2 78 48-130 2-79 (80)
13 cd03419 GRX_GRXh_1_2_like Glut 99.9 9E-22 2E-26 128.3 8.8 80 48-132 1-81 (82)
14 cd03031 GRX_GRX_like Glutaredo 99.9 2.9E-21 6.2E-26 140.6 10.2 87 48-137 1-93 (147)
15 cd03418 GRX_GRXb_1_3_like Glut 99.9 4.2E-21 9E-26 123.5 9.1 74 48-128 1-75 (75)
16 cd03027 GRX_DEP Glutaredoxin ( 99.8 6.3E-21 1.4E-25 122.8 7.7 72 47-125 1-72 (73)
17 TIGR02190 GlrX-dom Glutaredoxi 99.8 1E-20 2.3E-25 123.9 7.9 74 43-124 4-77 (79)
18 cd03029 GRX_hybridPRX5 Glutare 99.8 2.9E-20 6.4E-25 119.3 8.2 70 48-125 2-71 (72)
19 TIGR02183 GRXA Glutaredoxin, G 99.8 2.3E-19 5.1E-24 119.4 9.0 73 49-128 2-81 (86)
20 PRK12759 bifunctional gluaredo 99.8 2.8E-19 6E-24 148.9 9.5 91 46-140 1-94 (410)
21 PRK11200 grxA glutaredoxin 1; 99.8 3.1E-19 6.8E-24 118.1 7.9 75 48-127 2-81 (85)
22 cd02066 GRX_family Glutaredoxi 99.8 3.7E-18 8.1E-23 107.1 7.9 71 48-125 1-71 (72)
23 KOG0911 Glutaredoxin-related p 99.7 7.4E-18 1.6E-22 128.8 9.1 95 36-137 128-227 (227)
24 PF00462 Glutaredoxin: Glutare 99.7 1.2E-17 2.7E-22 103.5 5.9 60 49-115 1-60 (60)
25 cd03030 GRX_SH3BGR Glutaredoxi 99.7 3E-17 6.5E-22 110.9 7.7 85 48-135 1-91 (92)
26 TIGR02194 GlrX_NrdH Glutaredox 99.6 4.1E-16 9E-21 100.1 6.2 63 49-119 1-64 (72)
27 PRK10329 glutaredoxin-like pro 99.6 7.7E-16 1.7E-20 101.6 7.0 64 48-119 2-65 (81)
28 TIGR02196 GlrX_YruB Glutaredox 99.4 4.1E-13 8.9E-18 84.5 6.9 65 48-119 1-65 (74)
29 KOG2824 Glutaredoxin-related p 99.4 3.2E-13 7E-18 106.1 7.4 99 36-137 117-224 (281)
30 cd02976 NrdH NrdH-redoxin (Nrd 99.4 9.3E-13 2E-17 82.8 7.5 66 48-120 1-66 (73)
31 TIGR02200 GlrX_actino Glutared 99.4 1.8E-12 3.9E-17 82.8 7.0 66 48-119 1-67 (77)
32 cd02973 TRX_GRX_like Thioredox 99.3 9.6E-12 2.1E-16 78.1 6.1 58 48-116 2-64 (67)
33 PF04908 SH3BGR: SH3-binding, 99.2 1.9E-10 4.2E-15 78.6 8.1 86 48-135 2-97 (99)
34 cd00570 GST_N_family Glutathio 99.0 2.2E-09 4.8E-14 65.8 7.4 68 50-124 2-69 (71)
35 cd03041 GST_N_2GST_N GST_N fam 99.0 3.1E-09 6.8E-14 68.7 7.9 70 49-125 2-73 (77)
36 TIGR00411 redox_disulf_1 small 99.0 2.7E-09 5.8E-14 68.8 7.5 57 48-113 2-62 (82)
37 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 5E-09 1.1E-13 70.1 6.9 71 35-116 2-77 (89)
38 cd03040 GST_N_mPGES2 GST_N fam 98.9 7.4E-09 1.6E-13 66.5 7.5 67 48-124 1-71 (77)
39 cd03037 GST_N_GRX2 GST_N famil 98.9 7.2E-09 1.6E-13 65.6 7.2 67 50-125 2-69 (71)
40 cd03060 GST_N_Omega_like GST_N 98.8 3.5E-08 7.5E-13 62.6 7.9 66 50-123 2-68 (71)
41 cd03059 GST_N_SspA GST_N famil 98.8 5.4E-08 1.2E-12 61.5 7.7 68 49-124 1-68 (73)
42 cd03051 GST_N_GTT2_like GST_N 98.8 3.1E-08 6.7E-13 62.4 6.5 70 49-123 1-71 (74)
43 PHA02125 thioredoxin-like prot 98.7 4.5E-08 9.7E-13 63.1 6.9 56 49-116 2-57 (75)
44 cd03045 GST_N_Delta_Epsilon GS 98.7 6.3E-08 1.4E-12 61.4 7.2 70 49-123 1-70 (74)
45 cd03055 GST_N_Omega GST_N fami 98.7 1.2E-07 2.6E-12 63.0 8.5 71 46-124 16-87 (89)
46 TIGR00412 redox_disulf_2 small 98.7 7.2E-08 1.6E-12 62.4 6.9 55 48-115 2-60 (76)
47 cd03036 ArsC_like Arsenate Red 98.7 2.1E-08 4.5E-13 69.6 3.7 36 49-84 1-36 (111)
48 cd03056 GST_N_4 GST_N family, 98.6 2E-07 4.4E-12 58.6 7.3 70 49-123 1-70 (73)
49 cd02977 ArsC_family Arsenate R 98.6 5.8E-08 1.3E-12 66.4 4.9 36 49-84 1-36 (105)
50 TIGR03140 AhpF alkyl hydropero 98.6 5.1E-08 1.1E-12 83.3 5.6 84 28-117 100-183 (515)
51 PRK15317 alkyl hydroperoxide r 98.6 7.5E-08 1.6E-12 82.3 5.8 81 27-116 98-181 (517)
52 cd02975 PfPDO_like_N Pyrococcu 98.6 3.9E-07 8.4E-12 63.2 7.9 61 41-110 17-81 (113)
53 PF05768 DUF836: Glutaredoxin- 98.6 1E-06 2.2E-11 57.7 9.3 55 48-112 1-57 (81)
54 PRK01655 spxA transcriptional 98.5 1.6E-07 3.5E-12 67.0 5.5 36 49-84 2-37 (131)
55 PF13417 GST_N_3: Glutathione 98.5 3.2E-07 6.9E-12 58.8 6.3 67 51-125 1-67 (75)
56 TIGR02187 GlrX_arch Glutaredox 98.5 7.8E-07 1.7E-11 68.0 8.5 74 31-113 119-195 (215)
57 cd03032 ArsC_Spx Arsenate Redu 98.4 5.5E-07 1.2E-11 62.7 5.6 36 49-84 2-37 (115)
58 TIGR01617 arsC_related transcr 98.4 4.3E-07 9.3E-12 63.4 4.9 36 49-84 1-36 (117)
59 PRK12559 transcriptional regul 98.4 7.3E-07 1.6E-11 63.7 6.0 36 49-84 2-37 (131)
60 PRK13344 spxA transcriptional 98.4 4.8E-07 1E-11 64.8 4.9 35 49-83 2-36 (132)
61 cd03052 GST_N_GDAP1 GST_N fami 98.4 1.8E-06 4E-11 55.3 6.8 70 49-123 1-70 (73)
62 cd03053 GST_N_Phi GST_N family 98.4 3.5E-06 7.6E-11 53.6 7.8 72 49-125 2-73 (76)
63 TIGR01295 PedC_BrcD bacterioci 98.3 8.6E-06 1.9E-10 57.4 9.4 77 40-118 16-106 (122)
64 TIGR03143 AhpF_homolog putativ 98.3 1.1E-06 2.3E-11 76.0 5.7 76 28-114 459-539 (555)
65 cd03035 ArsC_Yffb Arsenate Red 98.3 1.2E-06 2.7E-11 60.3 4.7 36 49-84 1-36 (105)
66 cd02954 DIM1 Dim1 family; Dim1 98.3 4.9E-06 1.1E-10 58.3 7.4 60 48-116 17-82 (114)
67 cd03054 GST_N_Metaxin GST_N fa 98.2 7.4E-06 1.6E-10 51.8 7.2 56 55-125 14-69 (72)
68 cd02953 DsbDgamma DsbD gamma f 98.2 5.2E-06 1.1E-10 56.0 6.5 66 40-110 4-78 (104)
69 cd03042 GST_N_Zeta GST_N famil 98.2 7.1E-06 1.5E-10 51.5 6.7 69 50-123 2-70 (73)
70 cd03058 GST_N_Tau GST_N family 98.2 1.5E-05 3.3E-10 50.5 7.9 68 49-124 1-69 (74)
71 cd02949 TRX_NTR TRX domain, no 98.2 1.1E-05 2.4E-10 53.9 7.2 62 48-118 16-83 (97)
72 cd03033 ArsC_15kD Arsenate Red 98.2 4.1E-06 8.9E-11 58.4 5.2 36 48-83 1-36 (113)
73 cd03061 GST_N_CLIC GST_N famil 98.1 1.2E-05 2.7E-10 54.1 7.1 70 48-125 5-82 (91)
74 PF13192 Thioredoxin_3: Thiore 98.1 6.7E-06 1.4E-10 53.0 5.5 54 48-114 2-59 (76)
75 cd02985 TRX_CDSP32 TRX family, 98.1 2.1E-05 4.5E-10 53.4 7.8 65 46-116 16-85 (103)
76 cd03038 GST_N_etherase_LigE GS 98.1 1.2E-05 2.6E-10 52.4 6.4 65 55-125 14-79 (84)
77 cd02956 ybbN ybbN protein fami 98.1 1.8E-05 4E-10 52.3 7.2 61 47-116 14-80 (96)
78 cd02994 PDI_a_TMX PDIa family, 98.1 2E-05 4.4E-10 52.6 7.4 65 40-113 11-82 (101)
79 cd03049 GST_N_3 GST_N family, 98.1 2.1E-05 4.5E-10 49.7 7.0 66 50-123 2-70 (73)
80 PHA02278 thioredoxin-like prot 98.1 3.3E-05 7.3E-10 52.9 8.2 64 48-116 17-86 (103)
81 PF00085 Thioredoxin: Thioredo 98.1 4.1E-05 9E-10 50.5 8.3 78 47-136 19-102 (103)
82 cd02989 Phd_like_TxnDC9 Phosdu 98.1 2.8E-05 6.1E-10 53.9 7.7 62 48-118 25-91 (113)
83 PTZ00051 thioredoxin; Provisio 98.0 3.5E-05 7.6E-10 51.0 7.8 72 38-118 9-87 (98)
84 KOG0910 Thioredoxin-like prote 98.0 1.6E-05 3.6E-10 57.9 6.2 73 34-115 48-128 (150)
85 TIGR02187 GlrX_arch Glutaredox 98.0 1.8E-05 3.8E-10 60.6 6.8 66 41-115 15-90 (215)
86 PRK09381 trxA thioredoxin; Pro 98.0 3.1E-05 6.7E-10 52.5 7.1 64 46-118 22-91 (109)
87 KOG3029 Glutathione S-transfer 98.0 3.3E-05 7.2E-10 61.7 8.2 66 48-123 90-155 (370)
88 COG3118 Thioredoxin domain-con 98.0 1.7E-05 3.8E-10 63.6 6.5 91 18-119 17-114 (304)
89 cd03048 GST_N_Ure2p_like GST_N 98.0 4.8E-05 1E-09 49.0 7.5 70 49-124 2-74 (81)
90 cd03076 GST_N_Pi GST_N family, 98.0 7.7E-05 1.7E-09 47.4 8.3 69 48-124 1-69 (73)
91 TIGR01068 thioredoxin thioredo 98.0 3.9E-05 8.4E-10 50.4 7.2 62 47-117 16-83 (101)
92 cd03050 GST_N_Theta GST_N fami 98.0 5E-05 1.1E-09 48.4 7.1 71 49-124 1-71 (76)
93 cd02947 TRX_family TRX family; 98.0 7.6E-05 1.7E-09 47.5 7.9 63 47-118 12-79 (93)
94 cd02965 HyaE HyaE family; HyaE 98.0 5.2E-05 1.1E-09 52.8 7.5 66 45-119 27-100 (111)
95 PRK10996 thioredoxin 2; Provis 97.9 0.00019 4.1E-09 51.4 10.4 87 38-136 43-137 (139)
96 KOG4023 Uncharacterized conser 97.9 1.3E-05 2.7E-10 54.5 3.8 85 47-136 2-98 (108)
97 cd03080 GST_N_Metaxin_like GST 97.9 8E-05 1.7E-09 47.5 7.4 62 49-125 2-70 (75)
98 cd03039 GST_N_Sigma_like GST_N 97.9 6.9E-05 1.5E-09 47.2 7.0 68 50-124 2-69 (72)
99 COG1393 ArsC Arsenate reductas 97.9 2.5E-05 5.4E-10 54.9 5.1 36 48-83 2-37 (117)
100 cd02984 TRX_PICOT TRX domain, 97.9 6E-05 1.3E-09 49.7 6.8 60 47-115 16-81 (97)
101 cd02957 Phd_like Phosducin (Ph 97.9 6E-05 1.3E-09 51.8 6.8 67 48-124 27-98 (113)
102 cd01659 TRX_superfamily Thiore 97.9 6E-05 1.3E-09 43.8 5.8 59 49-113 1-62 (69)
103 TIGR02182 GRXB Glutaredoxin, G 97.9 6E-05 1.3E-09 57.2 7.0 68 50-126 1-69 (209)
104 cd02951 SoxW SoxW family; SoxW 97.9 4.3E-05 9.4E-10 53.1 5.7 69 38-111 4-92 (125)
105 cd02963 TRX_DnaJ TRX domain, D 97.8 8.7E-05 1.9E-09 51.0 7.0 60 48-116 27-93 (111)
106 cd02961 PDI_a_family Protein D 97.8 0.00013 2.9E-09 47.3 7.4 63 39-110 7-77 (101)
107 COG4545 Glutaredoxin-related p 97.8 4.7E-05 1E-09 49.4 4.9 69 50-122 5-82 (85)
108 cd02962 TMX2 TMX2 family; comp 97.8 0.00011 2.4E-09 53.8 7.6 68 48-118 50-124 (152)
109 cd02999 PDI_a_ERp44_like PDIa 97.8 4.7E-05 1E-09 51.5 5.2 56 46-110 19-78 (100)
110 cd03003 PDI_a_ERdj5_N PDIa fam 97.8 8.8E-05 1.9E-09 49.6 6.3 58 48-114 21-84 (101)
111 cd02955 SSP411 TRX domain, SSP 97.8 0.00023 4.9E-09 50.4 8.2 79 39-118 7-97 (124)
112 cd03044 GST_N_EF1Bgamma GST_N 97.8 0.00012 2.6E-09 46.6 6.2 68 50-123 2-70 (75)
113 PRK10387 glutaredoxin 2; Provi 97.8 0.00013 2.8E-09 54.7 7.3 69 49-126 1-70 (210)
114 cd03047 GST_N_2 GST_N family, 97.7 0.0002 4.4E-09 45.2 7.1 69 50-123 2-70 (73)
115 cd02987 Phd_like_Phd Phosducin 97.7 0.00012 2.7E-09 54.6 6.9 81 48-138 86-175 (175)
116 cd02948 TRX_NDPK TRX domain, T 97.7 0.00025 5.4E-09 47.8 7.7 68 38-115 8-84 (102)
117 KOG0907 Thioredoxin [Posttrans 97.7 9.7E-05 2.1E-09 51.0 5.7 58 49-115 25-87 (106)
118 cd03000 PDI_a_TMX3 PDIa family 97.7 6.3E-05 1.4E-09 50.7 4.6 66 36-110 5-78 (104)
119 cd02996 PDI_a_ERp44 PDIa famil 97.7 0.00014 2.9E-09 49.3 6.2 57 48-113 21-89 (108)
120 PF13409 GST_N_2: Glutathione 97.7 6.3E-05 1.4E-09 47.6 4.2 66 56-126 1-68 (70)
121 PRK09481 sspA stringent starva 97.7 0.00025 5.4E-09 53.6 8.1 68 48-123 10-77 (211)
122 TIGR01616 nitro_assoc nitrogen 97.7 0.0001 2.2E-09 52.4 5.3 36 48-83 2-37 (126)
123 PRK10026 arsenate reductase; P 97.7 0.00011 2.4E-09 53.2 5.6 37 47-83 2-38 (141)
124 PRK10853 putative reductase; P 97.7 8.9E-05 1.9E-09 52.1 4.8 35 49-83 2-36 (118)
125 TIGR00014 arsC arsenate reduct 97.7 8.7E-05 1.9E-09 51.6 4.7 35 49-83 1-35 (114)
126 cd03004 PDI_a_ERdj5_C PDIa fam 97.6 0.00019 4.2E-09 48.1 6.2 56 48-112 22-83 (104)
127 cd03001 PDI_a_P5 PDIa family, 97.6 0.00049 1.1E-08 45.6 7.9 54 48-110 21-78 (103)
128 cd03002 PDI_a_MPD1_like PDI fa 97.6 0.00014 3.1E-09 48.9 5.2 54 48-110 21-80 (109)
129 cd02959 ERp19 Endoplasmic reti 97.6 0.00031 6.6E-09 49.0 7.0 49 36-84 8-64 (117)
130 cd03034 ArsC_ArsC Arsenate Red 97.6 0.00011 2.4E-09 50.9 4.7 35 49-83 1-35 (112)
131 cd02986 DLP Dim1 family, Dim1- 97.6 0.00031 6.8E-09 49.1 6.8 61 48-115 17-81 (114)
132 PF14595 Thioredoxin_9: Thiore 97.6 6.7E-05 1.4E-09 53.5 3.3 80 31-118 27-114 (129)
133 TIGR01126 pdi_dom protein disu 97.6 0.00013 2.8E-09 48.1 4.5 55 47-110 15-75 (102)
134 cd03057 GST_N_Beta GST_N famil 97.6 0.00042 9.1E-09 44.0 6.7 69 50-124 2-71 (77)
135 cd02998 PDI_a_ERp38 PDIa famil 97.6 0.00023 5E-09 47.1 5.7 54 48-110 21-81 (105)
136 cd03006 PDI_a_EFP1_N PDIa fami 97.5 0.00031 6.7E-09 48.9 6.3 59 48-114 32-96 (113)
137 PRK15113 glutathione S-transfe 97.5 0.00062 1.3E-08 51.6 8.1 72 47-123 4-77 (214)
138 cd03005 PDI_a_ERp46 PDIa famil 97.5 0.00054 1.2E-08 45.3 6.6 60 47-115 18-86 (102)
139 cd03046 GST_N_GTT1_like GST_N 97.5 0.00069 1.5E-08 42.6 6.8 70 50-125 2-71 (76)
140 cd02993 PDI_a_APS_reductase PD 97.5 0.00057 1.2E-08 46.5 6.8 56 46-109 22-83 (109)
141 cd02997 PDI_a_PDIR PDIa family 97.5 0.00027 5.9E-09 46.8 4.9 60 47-115 19-88 (104)
142 PLN00410 U5 snRNP protein, DIM 97.4 0.00038 8.1E-09 50.5 5.7 44 48-91 26-73 (142)
143 PF13728 TraF: F plasmid trans 97.4 0.00065 1.4E-08 52.3 7.2 68 34-110 109-189 (215)
144 cd02950 TxlA TRX-like protein 97.4 0.00077 1.7E-08 48.5 7.1 61 48-115 23-90 (142)
145 cd02988 Phd_like_VIAF Phosduci 97.4 0.00043 9.3E-09 52.5 6.0 101 24-138 79-192 (192)
146 PF13098 Thioredoxin_2: Thiore 97.4 0.00055 1.2E-08 46.3 6.0 68 47-119 7-103 (112)
147 TIGR00862 O-ClC intracellular 97.4 0.0012 2.5E-08 51.6 8.3 64 55-126 17-80 (236)
148 TIGR02740 TraF-like TraF-like 97.3 0.00077 1.7E-08 53.6 7.0 68 38-110 159-235 (271)
149 cd02952 TRP14_like Human TRX-r 97.3 0.0014 3E-08 46.1 7.4 36 48-83 24-70 (119)
150 PLN02473 glutathione S-transfe 97.3 0.0014 3.1E-08 49.2 7.4 72 48-124 2-73 (214)
151 cd03043 GST_N_1 GST_N family, 97.2 0.002 4.3E-08 40.9 6.6 64 54-123 7-70 (73)
152 PTZ00062 glutaredoxin; Provisi 97.2 0.0013 2.8E-08 50.4 6.7 68 37-119 6-79 (204)
153 PRK13728 conjugal transfer pro 97.2 0.0022 4.8E-08 48.3 7.6 35 48-82 72-110 (181)
154 PRK10877 protein disulfide iso 97.2 0.0018 3.9E-08 50.4 7.3 24 47-70 109-132 (232)
155 cd02992 PDI_a_QSOX PDIa family 97.1 0.0018 4E-08 44.6 6.1 57 47-110 21-84 (114)
156 PF13899 Thioredoxin_7: Thiore 97.1 0.0017 3.6E-08 42.1 5.4 51 35-85 5-64 (82)
157 TIGR02739 TraF type-F conjugat 97.1 0.0026 5.6E-08 50.4 7.4 72 34-110 139-219 (256)
158 KOG0406 Glutathione S-transfer 97.1 0.0032 6.9E-08 49.1 7.5 72 47-125 8-79 (231)
159 PF03960 ArsC: ArsC family; I 97.1 0.00092 2E-08 45.9 4.1 32 52-83 1-32 (110)
160 cd02995 PDI_a_PDI_a'_C PDIa fa 97.0 0.0022 4.7E-08 42.4 5.8 54 47-110 20-79 (104)
161 PLN02378 glutathione S-transfe 97.0 0.0034 7.5E-08 47.6 7.0 62 55-124 18-79 (213)
162 PTZ00443 Thioredoxin domain-co 97.0 0.003 6.5E-08 49.0 6.7 61 46-115 53-119 (224)
163 PLN02817 glutathione dehydroge 97.0 0.0038 8.3E-08 49.4 7.4 79 34-124 54-132 (265)
164 PRK13703 conjugal pilus assemb 97.0 0.0013 2.9E-08 51.8 4.7 69 36-110 134-212 (248)
165 cd02972 DsbA_family DsbA famil 96.9 0.0022 4.7E-08 41.2 4.8 22 49-70 1-22 (98)
166 TIGR01262 maiA maleylacetoacet 96.8 0.003 6.6E-08 47.2 5.7 69 51-124 2-71 (210)
167 TIGR01130 ER_PDI_fam protein d 96.7 0.0086 1.9E-07 49.6 8.0 67 39-114 10-87 (462)
168 cd03065 PDI_b_Calsequestrin_N 96.7 0.0098 2.1E-07 41.8 7.1 68 38-116 17-101 (120)
169 PRK00293 dipZ thiol:disulfide 96.7 0.0096 2.1E-07 52.0 8.4 74 34-114 461-547 (571)
170 PLN02309 5'-adenylylsulfate re 96.6 0.013 2.9E-07 50.0 8.4 56 47-110 367-428 (457)
171 TIGR02738 TrbB type-F conjugat 96.5 0.014 2.9E-07 42.7 6.8 39 44-82 49-91 (153)
172 cd03009 TryX_like_TryX_NRX Try 96.5 0.0081 1.8E-07 41.8 5.4 23 46-68 19-41 (131)
173 TIGR00424 APS_reduc 5'-adenyly 96.5 0.0094 2E-07 50.9 6.7 37 48-84 374-415 (463)
174 PTZ00102 disulphide isomerase; 96.4 0.017 3.6E-07 48.5 8.1 59 47-114 51-118 (477)
175 PLN02395 glutathione S-transfe 96.4 0.016 3.5E-07 43.5 7.1 70 49-124 3-72 (215)
176 COG0625 Gst Glutathione S-tran 96.4 0.011 2.5E-07 44.3 6.2 69 50-124 2-71 (211)
177 cd02982 PDI_b'_family Protein 96.4 0.0056 1.2E-07 40.5 3.9 56 46-110 13-74 (103)
178 PRK13972 GSH-dependent disulfi 96.3 0.024 5.1E-07 42.8 7.5 56 49-110 2-57 (215)
179 PRK10357 putative glutathione 96.2 0.021 4.6E-07 42.4 6.5 65 50-122 2-67 (202)
180 cd02967 mauD Methylamine utili 96.1 0.013 2.7E-07 39.5 4.8 25 46-70 22-46 (114)
181 KOG1422 Intracellular Cl- chan 96.1 0.025 5.5E-07 43.5 6.7 61 56-124 20-80 (221)
182 cd03077 GST_N_Alpha GST_N fami 96.1 0.036 7.7E-07 35.6 6.5 69 49-123 2-70 (79)
183 PRK11752 putative S-transferas 96.1 0.03 6.4E-07 44.1 7.2 75 43-123 39-123 (264)
184 cd02964 TryX_like_family Trypa 96.0 0.046 1E-06 38.2 7.3 22 47-68 19-40 (132)
185 cd02958 UAS UAS family; UAS is 96.0 0.054 1.2E-06 36.9 7.4 74 35-115 5-91 (114)
186 PF06764 DUF1223: Protein of u 95.9 0.014 3.1E-07 44.6 4.8 68 49-119 2-86 (202)
187 PTZ00102 disulphide isomerase; 95.9 0.013 2.8E-07 49.2 4.6 55 47-110 377-437 (477)
188 KOG0190 Protein disulfide isom 95.8 0.031 6.6E-07 48.1 6.6 69 37-114 32-111 (493)
189 cd03011 TlpA_like_ScsD_MtbDsbE 95.8 0.016 3.4E-07 39.6 4.1 34 46-79 21-54 (123)
190 COG2999 GrxB Glutaredoxin 2 [P 95.8 0.015 3.2E-07 44.0 4.0 80 50-138 2-94 (215)
191 cd03078 GST_N_Metaxin1_like GS 95.7 0.062 1.3E-06 34.2 6.4 56 55-125 14-69 (73)
192 cd02966 TlpA_like_family TlpA- 95.7 0.019 4.1E-07 37.5 4.2 39 45-83 19-62 (116)
193 cd03010 TlpA_like_DsbE TlpA-li 95.7 0.043 9.4E-07 37.8 6.1 37 46-82 26-64 (127)
194 COG3634 AhpF Alkyl hydroperoxi 95.6 0.023 5E-07 47.4 4.9 78 31-117 102-182 (520)
195 PF02798 GST_N: Glutathione S- 95.6 0.083 1.8E-06 33.6 6.6 68 49-123 3-72 (76)
196 COG5494 Predicted thioredoxin/ 95.6 0.056 1.2E-06 41.9 6.7 60 47-115 11-70 (265)
197 cd03008 TryX_like_RdCVF Trypar 95.6 0.086 1.9E-06 38.3 7.4 39 46-84 26-76 (146)
198 KOG0908 Thioredoxin-like prote 95.5 0.026 5.5E-07 44.8 4.8 61 46-115 22-87 (288)
199 cd02960 AGR Anterior Gradient 95.5 0.029 6.4E-07 40.1 4.8 49 34-82 10-67 (130)
200 smart00594 UAS UAS domain. 95.5 0.1 2.3E-06 36.2 7.5 70 34-110 14-92 (122)
201 PF13905 Thioredoxin_8: Thiore 95.4 0.1 2.2E-06 33.9 6.7 46 48-93 4-56 (95)
202 PRK15412 thiol:disulfide inter 95.3 0.07 1.5E-06 39.7 6.2 37 48-84 71-108 (185)
203 KOG3425 Uncharacterized conser 95.2 0.04 8.7E-07 38.9 4.5 48 35-82 14-74 (128)
204 TIGR02661 MauD methylamine deh 95.2 0.083 1.8E-06 39.5 6.4 20 48-67 77-96 (189)
205 TIGR00385 dsbE periplasmic pro 95.1 0.078 1.7E-06 38.9 6.1 36 47-82 65-101 (173)
206 PRK11657 dsbG disulfide isomer 94.7 0.032 7E-07 43.8 3.3 21 48-68 120-140 (251)
207 KOG4244 Failed axon connection 94.7 0.09 2E-06 41.9 5.7 67 41-122 38-111 (281)
208 KOG2501 Thioredoxin, nucleored 94.6 0.12 2.6E-06 38.1 5.9 53 40-92 27-88 (157)
209 PF07315 DUF1462: Protein of u 94.6 0.12 2.6E-06 34.6 5.3 65 50-118 1-81 (93)
210 cd03075 GST_N_Mu GST_N family, 94.6 0.36 7.9E-06 31.1 7.6 73 51-124 3-77 (82)
211 cd03020 DsbA_DsbC_DsbG DsbA fa 94.5 0.062 1.3E-06 40.2 4.3 24 46-69 78-101 (197)
212 PHA03075 glutaredoxin-like pro 94.4 0.062 1.3E-06 37.7 3.8 35 47-81 3-37 (123)
213 COG2143 Thioredoxin-related pr 94.4 0.19 4E-06 37.4 6.3 35 35-69 30-66 (182)
214 PRK03147 thiol-disulfide oxido 94.4 0.091 2E-06 37.9 4.8 40 45-84 61-105 (173)
215 cd03079 GST_N_Metaxin2 GST_N f 94.3 0.32 7E-06 31.3 6.8 56 55-124 15-70 (74)
216 PRK14018 trifunctional thiored 94.3 0.051 1.1E-06 47.2 3.9 23 48-70 59-81 (521)
217 PF02114 Phosducin: Phosducin; 94.0 0.045 9.7E-07 43.6 2.7 84 48-141 149-241 (265)
218 PF08534 Redoxin: Redoxin; In 94.0 0.21 4.6E-06 35.0 5.9 46 47-92 30-81 (146)
219 PF06953 ArsD: Arsenical resis 93.4 0.36 7.8E-06 34.2 6.2 54 62-121 31-91 (123)
220 PF06110 DUF953: Eukaryotic pr 93.2 0.13 2.8E-06 36.2 3.7 47 35-81 7-66 (119)
221 COG0526 TrxA Thiol-disulfide i 93.2 0.22 4.8E-06 31.7 4.6 39 53-91 40-83 (127)
222 PRK10542 glutathionine S-trans 93.0 0.33 7.1E-06 35.8 5.8 68 50-123 2-71 (201)
223 COG3019 Predicted metal-bindin 92.9 0.53 1.1E-05 34.2 6.4 76 45-127 24-102 (149)
224 PTZ00057 glutathione s-transfe 92.7 0.93 2E-05 33.9 8.0 72 48-123 4-77 (205)
225 KOG4277 Uncharacterized conser 92.7 0.19 4.1E-06 41.2 4.3 73 34-115 31-112 (468)
226 COG4837 Uncharacterized protei 92.7 0.27 5.7E-06 33.3 4.3 72 44-118 2-88 (106)
227 cd03007 PDI_a_ERp29_N PDIa fam 92.6 1 2.2E-05 31.5 7.5 68 40-113 11-91 (116)
228 KOG0867 Glutathione S-transfer 92.5 0.56 1.2E-05 36.1 6.7 72 48-124 2-73 (226)
229 cd05295 MDH_like Malate dehydr 92.4 0.26 5.5E-06 42.2 5.0 71 54-126 1-82 (452)
230 KOG0868 Glutathione S-transfer 92.2 0.43 9.4E-06 36.2 5.5 70 48-124 5-77 (217)
231 KOG0190 Protein disulfide isom 92.2 0.062 1.3E-06 46.3 1.0 28 47-74 386-413 (493)
232 KOG0191 Thioredoxin/protein di 91.6 0.51 1.1E-05 39.0 5.9 58 44-110 46-107 (383)
233 TIGR01130 ER_PDI_fam protein d 91.5 0.33 7E-06 40.2 4.7 52 48-110 367-425 (462)
234 PF03190 Thioredox_DsbH: Prote 91.2 0.69 1.5E-05 34.3 5.5 63 50-116 42-117 (163)
235 cd03023 DsbA_Com1_like DsbA fa 91.1 0.21 4.5E-06 34.8 2.7 24 46-69 6-29 (154)
236 PTZ00056 glutathione peroxidas 90.3 0.96 2.1E-05 34.2 5.8 24 46-69 40-63 (199)
237 PF00578 AhpC-TSA: AhpC/TSA fa 90.2 1.2 2.5E-05 30.0 5.7 48 46-93 26-79 (124)
238 PLN02919 haloacid dehalogenase 89.7 1 2.2E-05 42.3 6.6 25 46-70 421-445 (1057)
239 cd03012 TlpA_like_DipZ_like Tl 89.5 0.38 8.1E-06 33.1 2.8 35 46-80 24-63 (126)
240 cd03018 PRX_AhpE_like Peroxire 89.1 2 4.3E-05 30.0 6.4 43 49-91 32-80 (149)
241 TIGR01626 ytfJ_HI0045 conserve 89.1 1.1 2.5E-05 33.7 5.3 38 45-82 59-105 (184)
242 cd02970 PRX_like2 Peroxiredoxi 88.9 1.8 3.9E-05 30.0 6.0 38 47-84 25-68 (149)
243 PLN02412 probable glutathione 88.7 2 4.3E-05 31.4 6.3 16 48-63 32-47 (167)
244 cd03014 PRX_Atyp2cys Peroxired 88.7 2.9 6.2E-05 29.1 7.0 38 46-83 27-68 (143)
245 cd02968 SCO SCO (an acronym fo 88.6 2.4 5.1E-05 29.3 6.5 23 46-68 23-46 (142)
246 cd03017 PRX_BCP Peroxiredoxin 88.4 3 6.5E-05 28.7 6.9 44 49-92 27-76 (140)
247 KOG1695 Glutathione S-transfer 88.3 2.9 6.3E-05 32.1 7.2 70 47-124 2-71 (206)
248 cd02971 PRX_family Peroxiredox 88.3 2.3 5E-05 29.2 6.2 36 48-83 25-66 (140)
249 KOG0912 Thiol-disulfide isomer 88.2 0.54 1.2E-05 38.5 3.2 68 41-115 7-85 (375)
250 cd00340 GSH_Peroxidase Glutath 87.9 1.4 2.9E-05 31.5 4.9 22 47-69 24-45 (152)
251 COG4232 Thiol:disulfide interc 87.6 2.1 4.7E-05 37.6 6.7 91 39-138 464-568 (569)
252 cd03019 DsbA_DsbA DsbA family, 87.2 0.56 1.2E-05 33.8 2.6 24 46-69 16-39 (178)
253 TIGR03143 AhpF_homolog putativ 87.1 2.1 4.5E-05 37.2 6.5 73 29-110 346-425 (555)
254 PF04134 DUF393: Protein of un 86.7 2.2 4.8E-05 28.7 5.3 73 51-127 1-76 (114)
255 COG5429 Uncharacterized secret 86.6 1.2 2.6E-05 35.0 4.2 27 48-74 44-70 (261)
256 PF10568 Tom37: Outer mitochon 86.5 3.5 7.7E-05 26.2 5.7 54 56-124 13-70 (72)
257 TIGR03759 conj_TIGR03759 integ 85.5 0.75 1.6E-05 35.2 2.6 46 44-89 107-153 (200)
258 cd03015 PRX_Typ2cys Peroxiredo 84.4 4.9 0.00011 29.2 6.4 21 49-69 33-54 (173)
259 cd02969 PRX_like1 Peroxiredoxi 84.3 4 8.6E-05 29.5 5.9 24 46-69 26-49 (171)
260 PF13462 Thioredoxin_4: Thiore 84.3 1.1 2.4E-05 31.6 3.0 22 46-67 13-34 (162)
261 PF11009 DUF2847: Protein of u 84.1 11 0.00024 25.9 8.3 66 45-115 18-91 (105)
262 PRK00522 tpx lipid hydroperoxi 84.1 5.6 0.00012 28.9 6.7 37 47-83 46-86 (167)
263 TIGR02540 gpx7 putative glutat 83.1 1.3 2.7E-05 31.6 2.8 18 48-65 25-42 (153)
264 PRK11509 hydrogenase-1 operon 82.9 4.6 9.9E-05 28.9 5.6 63 48-119 36-108 (132)
265 KOG0191 Thioredoxin/protein di 82.7 3 6.4E-05 34.5 5.2 38 45-82 162-205 (383)
266 TIGR03137 AhpC peroxiredoxin. 82.4 4.7 0.0001 29.9 5.8 18 47-64 32-51 (187)
267 cd03023 DsbA_Com1_like DsbA fa 81.8 1.1 2.3E-05 31.1 2.0 24 100-123 125-148 (154)
268 PF13462 Thioredoxin_4: Thiore 80.8 2.4 5.1E-05 29.9 3.5 24 100-123 132-155 (162)
269 KOG3171 Conserved phosducin-li 78.8 6.7 0.00015 30.7 5.6 85 49-141 163-254 (273)
270 PTZ00256 glutathione peroxidas 78.5 2.1 4.4E-05 31.7 2.7 19 50-68 46-64 (183)
271 PRK09437 bcp thioredoxin-depen 78.4 14 0.00029 26.0 6.9 15 49-63 34-49 (154)
272 PF09822 ABC_transp_aux: ABC-t 77.3 7 0.00015 30.5 5.5 56 28-83 8-74 (271)
273 cd03022 DsbA_HCCA_Iso DsbA fam 76.9 2.2 4.7E-05 31.1 2.4 59 62-123 125-186 (192)
274 KOG1672 ATP binding protein [P 76.2 9.8 0.00021 29.2 5.7 96 36-140 74-180 (211)
275 PLN02399 phospholipid hydroper 75.2 3.3 7.1E-05 32.4 3.1 23 45-67 99-121 (236)
276 COG0041 PurE Phosphoribosylcar 74.5 8.9 0.00019 28.3 5.0 74 49-124 7-102 (162)
277 KOG3414 Component of the U4/U6 74.5 11 0.00023 27.1 5.2 61 48-115 26-90 (142)
278 cd03016 PRX_1cys Peroxiredoxin 72.4 8.9 0.00019 28.8 4.8 18 47-64 26-45 (203)
279 TIGR01689 EcbF-BcbF capsule bi 72.0 15 0.00033 25.9 5.6 51 31-81 24-87 (126)
280 PF10865 DUF2703: Domain of un 70.5 11 0.00024 26.5 4.5 48 56-115 14-72 (120)
281 cd03019 DsbA_DsbA DsbA family, 69.7 2.9 6.2E-05 30.0 1.5 20 100-119 139-158 (178)
282 PRK10954 periplasmic protein d 69.4 2.1 4.6E-05 32.3 0.8 57 61-120 124-183 (207)
283 PF01323 DSBA: DSBA-like thior 69.4 4.7 0.0001 29.2 2.7 33 48-80 1-38 (193)
284 PF13905 Thioredoxin_8: Thiore 69.3 26 0.00057 22.2 6.4 56 46-110 33-88 (95)
285 cd06387 PBP1_iGluR_AMPA_GluR3 69.3 28 0.0006 28.8 7.5 90 31-124 47-146 (372)
286 cd06388 PBP1_iGluR_AMPA_GluR4 69.0 42 0.00091 27.5 8.4 87 32-124 48-146 (371)
287 cd06381 PBP1_iGluR_delta_like 68.5 64 0.0014 26.4 9.4 91 31-123 46-159 (363)
288 cd03010 TlpA_like_DsbE TlpA-li 68.2 34 0.00073 23.0 6.8 69 36-115 43-114 (127)
289 PRK13190 putative peroxiredoxi 67.8 14 0.00031 27.8 5.0 22 47-68 28-51 (202)
290 TIGR03865 PQQ_CXXCW PQQ-depend 67.1 29 0.00063 25.2 6.4 29 45-73 115-143 (162)
291 KOG4420 Uncharacterized conser 66.9 4.2 9E-05 32.7 2.0 74 49-127 27-100 (325)
292 PF03227 GILT: Gamma interfero 65.0 4.2 9.2E-05 27.6 1.5 15 48-62 2-16 (108)
293 PRK10382 alkyl hydroperoxide r 64.9 17 0.00037 27.2 4.9 16 48-63 33-50 (187)
294 COG3340 PepE Peptidase E [Amin 63.7 37 0.00081 26.5 6.6 87 32-131 16-109 (224)
295 TIGR00385 dsbE periplasmic pro 63.5 48 0.001 24.0 7.0 65 39-115 84-151 (173)
296 cd02974 AhpF_NTD_N Alkyl hydro 62.2 16 0.00035 24.3 3.9 38 33-71 3-44 (94)
297 KOG1731 FAD-dependent sulfhydr 62.0 1.6 3.5E-05 38.4 -1.3 26 46-71 58-83 (606)
298 PF04566 RNA_pol_Rpb2_4: RNA p 61.2 16 0.00034 22.6 3.5 17 108-124 1-17 (63)
299 PF02630 SCO1-SenC: SCO1/SenC; 60.4 27 0.00058 25.6 5.2 49 46-94 53-109 (174)
300 COG1927 Mtd Coenzyme F420-depe 60.2 74 0.0016 25.0 7.6 66 27-94 39-108 (277)
301 cd06389 PBP1_iGluR_AMPA_GluR2 60.2 53 0.0012 26.8 7.5 89 32-124 42-140 (370)
302 PRK10954 periplasmic protein d 60.1 6.4 0.00014 29.6 1.9 20 46-65 38-57 (207)
303 cd03025 DsbA_FrnE_like DsbA fa 59.2 6.1 0.00013 28.7 1.6 21 48-68 2-22 (193)
304 PRK13599 putative peroxiredoxi 59.1 22 0.00047 27.2 4.7 13 51-63 35-47 (215)
305 PTZ00137 2-Cys peroxiredoxin; 59.0 19 0.00041 28.6 4.4 23 41-63 93-117 (261)
306 PF03575 Peptidase_S51: Peptid 58.0 29 0.00063 24.7 5.0 64 59-136 1-64 (154)
307 cd03024 DsbA_FrnE DsbA family, 57.7 15 0.00033 26.8 3.5 19 49-67 1-19 (201)
308 COG5309 Exo-beta-1,3-glucanase 57.3 94 0.002 25.2 8.0 98 9-118 47-147 (305)
309 PF12689 Acid_PPase: Acid Phos 56.7 39 0.00084 25.0 5.5 78 31-114 45-134 (169)
310 TIGR01162 purE phosphoribosyla 55.7 26 0.00057 25.8 4.4 37 49-85 3-39 (156)
311 COG2761 FrnE Predicted dithiol 55.5 6.6 0.00014 30.6 1.3 24 48-71 7-34 (225)
312 PRK13189 peroxiredoxin; Provis 54.9 31 0.00068 26.4 5.0 18 46-63 35-54 (222)
313 PF11287 DUF3088: Protein of u 54.2 12 0.00026 26.1 2.3 51 56-113 23-77 (112)
314 COG1999 Uncharacterized protei 53.6 28 0.00061 26.4 4.5 62 33-94 54-125 (207)
315 PF03691 UPF0167: Uncharacteri 53.3 16 0.00035 27.4 3.0 113 1-136 1-135 (176)
316 cd03022 DsbA_HCCA_Iso DsbA fam 53.2 12 0.00026 27.1 2.3 27 49-75 1-31 (192)
317 cd03024 DsbA_FrnE DsbA family, 52.9 11 0.00023 27.6 2.0 22 100-121 171-193 (201)
318 cd02991 UAS_ETEA UAS family, E 51.6 76 0.0016 21.7 7.3 65 36-110 6-82 (116)
319 PRK10606 btuE putative glutath 51.5 16 0.00035 27.3 2.8 19 45-63 25-43 (183)
320 COG1331 Highly conserved prote 50.9 53 0.0012 29.7 6.3 68 40-115 36-122 (667)
321 COG1651 DsbG Protein-disulfide 50.8 16 0.00034 27.9 2.7 24 46-69 85-108 (244)
322 KOG0913 Thiol-disulfide isomer 50.5 4 8.7E-05 32.1 -0.6 34 37-70 31-64 (248)
323 PF01323 DSBA: DSBA-like thior 50.2 21 0.00045 25.8 3.2 59 62-123 125-187 (193)
324 PRK15000 peroxidase; Provision 49.8 1E+02 0.0022 23.1 7.0 23 45-67 33-57 (200)
325 cd06390 PBP1_iGluR_AMPA_GluR1 49.5 1.4E+02 0.0031 24.3 8.4 89 32-124 41-139 (364)
326 cd03013 PRX5_like Peroxiredoxi 49.4 94 0.002 22.2 6.6 19 45-63 28-48 (155)
327 PRK15317 alkyl hydroperoxide r 47.7 24 0.00051 30.3 3.6 39 32-71 2-44 (517)
328 PRK13191 putative peroxiredoxi 47.3 51 0.0011 25.1 5.0 23 46-68 33-57 (215)
329 PF08599 Nbs1_C: DNA damage re 47.2 16 0.00034 22.9 1.7 32 99-136 12-44 (65)
330 PTZ00253 tryparedoxin peroxida 46.9 1.1E+02 0.0024 22.6 6.8 17 48-64 38-56 (199)
331 PF01522 Polysacc_deac_1: Poly 46.8 14 0.00029 24.7 1.6 61 13-74 57-122 (123)
332 cd03008 TryX_like_RdCVF Trypar 46.5 1.1E+02 0.0023 22.0 6.8 59 48-115 65-126 (146)
333 TIGR02884 spore_pdaA delta-lac 46.2 58 0.0013 24.8 5.2 70 11-80 87-161 (224)
334 cd03021 DsbA_GSTK DsbA family, 45.7 24 0.00053 26.4 3.0 28 48-75 2-33 (209)
335 PF05673 DUF815: Protein of un 45.5 66 0.0014 25.5 5.5 63 45-115 51-117 (249)
336 PRK00994 F420-dependent methyl 45.5 1.6E+02 0.0034 23.6 9.3 102 27-139 39-149 (277)
337 TIGR01650 PD_CobS cobaltochela 45.0 1.8E+02 0.0038 24.0 8.8 77 6-84 25-102 (327)
338 COG2179 Predicted hydrolase of 44.4 1.4E+02 0.0029 22.5 7.6 74 31-114 46-120 (175)
339 PF09413 DUF2007: Domain of un 43.7 18 0.0004 21.9 1.8 29 49-77 1-29 (67)
340 TIGR03521 GldG gliding-associa 43.2 71 0.0015 28.0 5.9 55 28-82 31-95 (552)
341 PF02966 DIM1: Mitosis protein 43.0 75 0.0016 22.8 4.9 61 48-115 23-87 (133)
342 cd06392 PBP1_iGluR_delta_1 N-t 43.0 2E+02 0.0044 24.1 8.6 104 18-123 32-159 (400)
343 PF10087 DUF2325: Uncharacteri 42.6 84 0.0018 20.5 5.0 41 37-77 39-81 (97)
344 PRK05937 8-amino-7-oxononanoat 42.5 1.2E+02 0.0027 24.5 6.9 43 14-56 39-81 (370)
345 PRK05569 flavodoxin; Provision 42.4 1.1E+02 0.0024 21.0 8.5 28 46-73 83-113 (141)
346 TIGR03140 AhpF alkyl hydropero 41.8 33 0.00071 29.5 3.6 39 32-71 2-44 (515)
347 cd01444 GlpE_ST GlpE sulfurtra 41.8 68 0.0015 20.2 4.4 37 36-73 46-82 (96)
348 COG0602 NrdG Organic radical a 41.7 11 0.00023 29.0 0.5 83 48-141 22-111 (212)
349 TIGR01753 flav_short flavodoxi 40.8 1.1E+02 0.0024 20.6 7.1 28 46-73 80-112 (140)
350 KOG0914 Thioredoxin-like prote 39.0 29 0.00062 27.4 2.5 62 49-115 148-218 (265)
351 TIGR02873 spore_ylxY probable 38.5 85 0.0018 24.8 5.2 71 11-82 135-210 (268)
352 cd01524 RHOD_Pyr_redox Member 38.4 1E+02 0.0022 19.4 5.0 36 36-72 41-76 (90)
353 PF06897 DUF1269: Protein of u 38.3 1.1E+02 0.0024 20.7 5.1 61 31-91 39-99 (102)
354 PTZ00494 tuzin-like protein; P 37.9 1.5E+02 0.0033 26.3 6.8 70 36-115 379-454 (664)
355 cd01480 vWA_collagen_alpha_1-V 36.7 1.6E+02 0.0036 21.3 7.5 56 26-81 84-150 (186)
356 PF00731 AIRC: AIR carboxylase 36.4 44 0.00096 24.4 3.0 45 49-93 3-50 (150)
357 COG1651 DsbG Protein-disulfide 36.3 27 0.00058 26.6 2.0 23 100-122 211-233 (244)
358 TIGR02764 spore_ybaN_pdaB poly 36.1 1.2E+02 0.0025 22.2 5.4 70 12-82 57-131 (191)
359 PF11303 DUF3105: Protein of u 36.0 1.4E+02 0.0031 21.1 5.6 63 2-69 7-70 (130)
360 cd07067 HP_PGM_like Histidine 35.5 1.1E+02 0.0024 21.0 5.0 65 10-74 5-75 (153)
361 cd04911 ACT_AKiii-YclM-BS_1 AC 35.0 42 0.00092 21.6 2.5 20 57-76 15-34 (76)
362 PF15643 Tox-PL-2: Papain fold 34.7 55 0.0012 22.3 3.0 27 56-82 20-47 (100)
363 cd01535 4RHOD_Repeat_4 Member 34.5 1.1E+02 0.0023 21.7 4.8 46 34-81 37-82 (145)
364 TIGR03190 benz_CoA_bzdN benzoy 34.5 2.3E+02 0.0051 23.4 7.4 20 63-82 335-354 (377)
365 cd07040 HP Histidine phosphata 34.5 1E+02 0.0022 20.9 4.6 61 10-70 5-70 (153)
366 PF11399 DUF3192: Protein of u 34.1 49 0.0011 22.6 2.8 19 101-119 78-96 (102)
367 cd03020 DsbA_DsbC_DsbG DsbA fa 32.7 64 0.0014 23.8 3.5 21 100-120 168-189 (197)
368 PRK15348 type III secretion sy 32.7 44 0.00096 26.4 2.7 32 45-76 17-48 (249)
369 cd00291 SirA_YedF_YeeD SirA, Y 31.7 1.2E+02 0.0025 18.1 4.7 43 32-75 12-54 (69)
370 PF11019 DUF2608: Protein of u 31.7 2.4E+02 0.0052 22.0 6.7 76 5-80 130-211 (252)
371 PLN02590 probable tyrosine dec 31.2 2.5E+02 0.0055 24.7 7.3 79 47-138 228-317 (539)
372 COG3011 Predicted thiol-disulf 30.8 2.1E+02 0.0045 20.6 7.8 37 45-81 6-44 (137)
373 PHA00729 NTP-binding motif con 30.7 2.5E+02 0.0054 21.8 6.6 24 48-71 19-42 (226)
374 cd04335 PrdX_deacylase This CD 30.5 1.6E+02 0.0035 20.8 5.2 24 61-84 2-25 (156)
375 smart00450 RHOD Rhodanese Homo 30.0 1.2E+02 0.0027 18.4 4.2 28 45-73 55-82 (100)
376 PRK06756 flavodoxin; Provision 29.9 1.9E+02 0.0042 20.0 6.1 28 46-73 83-116 (148)
377 cd08183 Fe-ADH2 Iron-containin 29.6 2.7E+02 0.006 22.8 7.0 68 47-118 23-90 (374)
378 KOG3160 Gamma-interferon induc 29.5 36 0.00078 26.4 1.7 18 46-63 40-57 (220)
379 PF13364 BetaGal_dom4_5: Beta- 29.4 46 0.00099 22.6 2.0 19 101-119 60-78 (111)
380 cd02127 PA_hPAP21_like PA_hPAP 28.9 1.9E+02 0.0042 19.8 5.5 63 46-113 34-97 (118)
381 PF00282 Pyridoxal_deC: Pyrido 28.1 1.3E+02 0.0028 24.8 4.9 71 46-123 139-215 (373)
382 TIGR01917 gly_red_sel_B glycin 28.0 1.6E+02 0.0034 25.4 5.3 41 33-74 322-367 (431)
383 PRK07308 flavodoxin; Validated 28.0 2.1E+02 0.0045 19.8 6.1 8 47-54 83-90 (146)
384 cd01520 RHOD_YbbB Member of th 28.0 2E+02 0.0042 19.5 5.1 37 43-81 83-119 (128)
385 TIGR00334 5S_RNA_mat_M5 ribonu 27.7 1.1E+02 0.0023 23.1 3.8 44 26-70 27-70 (174)
386 cd04336 YeaK YeaK is an unchar 27.1 1.9E+02 0.004 20.3 5.0 24 61-84 2-25 (153)
387 PF07728 AAA_5: AAA domain (dy 27.1 1.2E+02 0.0026 20.5 3.9 38 48-85 1-38 (139)
388 PF14437 MafB19-deam: MafB19-l 27.0 2.3E+02 0.0051 20.6 5.4 29 46-74 99-129 (146)
389 TIGR02263 benz_CoA_red_C benzo 26.6 3.6E+02 0.0078 22.3 7.2 44 38-81 311-361 (380)
390 PRK13463 phosphatase PhoE; Pro 26.0 2.7E+02 0.0059 20.5 6.0 65 10-74 8-75 (203)
391 PF11238 DUF3039: Protein of u 25.6 45 0.00097 20.5 1.3 13 55-67 45-57 (58)
392 KOG1467 Translation initiation 25.3 3.1E+02 0.0068 24.2 6.6 50 44-94 357-406 (556)
393 PF08308 PEGA: PEGA domain; I 25.2 58 0.0012 19.8 1.8 12 107-118 14-25 (71)
394 PF11008 DUF2846: Protein of u 25.0 58 0.0013 22.1 2.0 16 103-118 40-55 (117)
395 cd00886 MogA_MoaB MogA_MoaB fa 24.3 2E+02 0.0042 20.4 4.7 62 59-124 21-82 (152)
396 TIGR03439 methyl_EasF probable 24.2 1.3E+02 0.0029 24.5 4.2 31 54-84 82-115 (319)
397 smart00852 MoCF_biosynth Proba 24.1 1.9E+02 0.0041 19.8 4.5 60 59-124 19-78 (135)
398 PF06053 DUF929: Domain of unk 24.1 53 0.0012 26.0 1.8 30 43-72 54-89 (249)
399 TIGR00011 YbaK_EbsC ybaK/ebsC 23.4 1.6E+02 0.0035 20.7 4.1 22 62-83 2-23 (152)
400 KOG2603 Oligosaccharyltransfer 23.2 2.2E+02 0.0048 23.5 5.2 54 49-111 64-133 (331)
401 cd05564 PTS_IIB_chitobiose_lic 23.1 1.6E+02 0.0035 19.3 3.8 19 101-119 68-86 (96)
402 cd00158 RHOD Rhodanese Homolog 23.1 88 0.0019 18.9 2.4 31 42-73 46-76 (89)
403 PF07894 DUF1669: Protein of u 22.8 3.6E+02 0.0079 21.8 6.3 47 47-93 119-168 (284)
404 PF03470 zf-XS: XS zinc finger 22.8 28 0.00061 20.1 0.0 6 57-62 1-6 (43)
405 TIGR03757 conj_TIGR03757 integ 22.8 57 0.0012 22.8 1.5 24 100-123 80-104 (113)
406 cd00758 MoCF_BD MoCF_BD: molyb 22.8 2E+02 0.0044 19.8 4.4 58 60-123 21-78 (133)
407 cd00755 YgdL_like Family of ac 22.5 83 0.0018 24.4 2.6 19 55-73 154-172 (231)
408 PF13743 Thioredoxin_5: Thiore 22.3 66 0.0014 23.6 1.9 20 51-70 2-21 (176)
409 KOG1734 Predicted RING-contain 22.2 52 0.0011 26.7 1.4 11 53-63 269-279 (328)
410 TIGR03191 benz_CoA_bzdO benzoy 22.2 2.8E+02 0.006 23.6 5.8 39 45-83 361-403 (430)
411 PF07908 D-aminoacyl_C: D-amin 22.1 95 0.0021 17.9 2.2 18 102-119 17-34 (48)
412 TIGR00177 molyb_syn molybdenum 22.0 2.1E+02 0.0045 20.1 4.4 58 60-123 29-86 (144)
413 PF02780 Transketolase_C: Tran 22.0 1.1E+02 0.0024 20.6 2.9 36 46-81 9-45 (124)
414 PF08874 DUF1835: Domain of un 21.9 2.6E+02 0.0056 18.8 5.2 40 39-79 79-122 (124)
415 PF03102 NeuB: NeuB family; I 21.8 3.4E+02 0.0074 21.2 5.9 68 31-112 52-121 (241)
416 PF01993 MTD: methylene-5,6,7, 21.8 4.3E+02 0.0092 21.2 6.6 99 30-139 41-148 (276)
417 cd01896 DRG The developmentall 21.6 2.5E+02 0.0055 21.3 5.1 49 59-114 137-186 (233)
418 PRK10834 vancomycin high tempe 21.2 4.1E+02 0.009 20.9 6.3 40 37-78 129-168 (239)
419 COG2607 Predicted ATPase (AAA+ 21.2 3.4E+02 0.0074 21.9 5.7 60 46-113 85-148 (287)
420 PF05711 TylF: Macrocin-O-meth 21.1 99 0.0021 24.4 2.8 52 31-82 189-241 (248)
421 cd06340 PBP1_ABC_ligand_bindin 20.4 2.1E+02 0.0046 22.6 4.6 44 31-74 53-97 (347)
422 PF06189 5-nucleotidase: 5'-nu 20.3 1.4E+02 0.003 23.9 3.4 27 48-74 188-214 (264)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.97 E-value=5.9e-31 Score=179.97 Aligned_cols=98 Identities=59% Similarity=1.016 Sum_probs=90.1
Q ss_pred HHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEEECCEEeecc
Q 032368 40 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGL 118 (142)
Q Consensus 40 v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~ 118 (142)
+++++++++|+||++++||||.++|++|++++++|++++||.+++ .+.++++.++ +|+.++|+|||||++|||+
T Consensus 1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~-----tg~~tvP~Vfi~g~~iGG~ 75 (99)
T TIGR02189 1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRL-----GCSPAVPAVFVGGKLVGGL 75 (99)
T ss_pred ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHh-----cCCCCcCeEEECCEEEcCH
Confidence 357889999999999999999999999999999999999998877 4566677765 7999999999999999999
Q ss_pred HHHHhhhhcCChHHHHHhcCccCC
Q 032368 119 DRVMATHISGDLVPILKEAGALWL 142 (142)
Q Consensus 119 del~~~~~~g~L~~~L~~~g~l~~ 142 (142)
||+.+++++|+|.++|+++|++|+
T Consensus 76 ddl~~l~~~G~L~~~l~~~~~~~~ 99 (99)
T TIGR02189 76 ENVMALHISGSLVPMLKQAGALWL 99 (99)
T ss_pred HHHHHHHHcCCHHHHHHHhCcccC
Confidence 999999999999999999999975
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.97 E-value=1.5e-29 Score=175.65 Aligned_cols=100 Identities=22% Similarity=0.350 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCC---CcEEEEeeCCC-CHHHHHHHhhhhhccCCCceeeeEEEEC
Q 032368 36 AAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGV---NPAVFEVADGD-EAAVLDELSRIDVENGGGIIQFPAVFVG 111 (142)
Q Consensus 36 ~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi---~~~~i~id~~~-~~~~~~~L~~~~~~~~~g~~tvP~vfI~ 111 (142)
+++++++++++++|+||++++||||.++|++|+++++ +|++++|+... ..+.+++|.++ +|..+||+||||
T Consensus 2 ~~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~-----tG~~tVP~IfI~ 76 (108)
T PHA03050 2 AEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQI-----TGGRTVPRIFFG 76 (108)
T ss_pred hHHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHH-----cCCCCcCEEEEC
Confidence 4688999999999999999999999999999999999 78899998754 36778899887 799999999999
Q ss_pred CEEeeccHHHHhhhhcCChHHHHHhcCcc
Q 032368 112 GKLFGGLDRVMATHISGDLVPILKEAGAL 140 (142)
Q Consensus 112 G~~IGG~del~~~~~~g~L~~~L~~~g~l 140 (142)
|++|||++|+.+++++|+|.++|+++|++
T Consensus 77 g~~iGG~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 77 KTSIGGYSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred CEEEeChHHHHHHHHcCCHHHHHHHcccc
Confidence 99999999999999999999999999986
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=174.01 Aligned_cols=102 Identities=44% Similarity=0.829 Sum_probs=96.3
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEEECCE
Q 032368 35 TAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVFVGGK 113 (142)
Q Consensus 35 ~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vfI~G~ 113 (142)
++.+++++++++++|+||++++||||+++|++|...++++.++++|.+++ .+++++|.++ +|.++||+|||+|+
T Consensus 2 ~~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~-----tg~~tvP~vFI~Gk 76 (104)
T KOG1752|consen 2 AAEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKL-----TGQRTVPNVFIGGK 76 (104)
T ss_pred cHHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHh-----cCCCCCCEEEECCE
Confidence 35678999999999999999999999999999999999999999999987 5788888887 79999999999999
Q ss_pred EeeccHHHHhhhhcCChHHHHHhcCccC
Q 032368 114 LFGGLDRVMATHISGDLVPILKEAGALW 141 (142)
Q Consensus 114 ~IGG~del~~~~~~g~L~~~L~~~g~l~ 141 (142)
+|||.+|+++++.+|+|.++|+++|++|
T Consensus 77 ~iGG~~dl~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 77 FIGGASDLMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred EEcCHHHHHHHHHcCCHHHHHHHhhccC
Confidence 9999999999999999999999999987
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.96 E-value=3.7e-29 Score=175.18 Aligned_cols=100 Identities=24% Similarity=0.435 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCCEEEEEcC-----CCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE
Q 032368 35 TAAKSVEKMLVENAVLVLGRP-----GCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF 109 (142)
Q Consensus 35 ~~~~~v~~~~~~~~Vvvy~~~-----~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf 109 (142)
...++++++++.++|+||++. +||||++|+++|++++++|.+++++.+ .+++++|.++ +|++||||||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~-----sg~~TVPQIF 75 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKY-----ANWPTFPQLW 75 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHH-----hCCCCCCeEE
Confidence 478899999999999999994 999999999999999999998888765 4577889887 8999999999
Q ss_pred ECCEEeeccHHHHhhhhcCChHHHHHhcCccC
Q 032368 110 VGGKLFGGLDRVMATHISGDLVPILKEAGALW 141 (142)
Q Consensus 110 I~G~~IGG~del~~~~~~g~L~~~L~~~g~l~ 141 (142)
|||++|||+|++.+++.+|+|.++|+++|+++
T Consensus 76 I~G~~IGG~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 76 VDGELVGGCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred ECCEEEcChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 99999999999999999999999999999864
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.94 E-value=1.1e-26 Score=158.24 Aligned_cols=91 Identities=23% Similarity=0.422 Sum_probs=82.6
Q ss_pred HHHHHHHhcCCCEEEEEc-----CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC
Q 032368 37 AKSVEKMLVENAVLVLGR-----PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG 111 (142)
Q Consensus 37 ~~~v~~~~~~~~Vvvy~~-----~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~ 111 (142)
.++++++++.++|+||++ ++||||.++|++|++++++|++++++.+ .+.+++|.++ +|+.+||+||||
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~-----tg~~tvP~vfi~ 74 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEY-----SNWPTIPQLYVK 74 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHH-----hCCCCCCEEEEC
Confidence 478999999999999998 8999999999999999999998877644 5667888876 789999999999
Q ss_pred CEEeeccHHHHhhhhcCChHHHH
Q 032368 112 GKLFGGLDRVMATHISGDLVPIL 134 (142)
Q Consensus 112 G~~IGG~del~~~~~~g~L~~~L 134 (142)
|++|||+||+.+++++|+|.++|
T Consensus 75 g~~iGG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 75 GEFVGGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred CEEEeChHHHHHHHHCcChHHhC
Confidence 99999999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.92 E-value=1.1e-24 Score=146.38 Aligned_cols=85 Identities=31% Similarity=0.554 Sum_probs=76.8
Q ss_pred HHHHhcCCCEEEEEc-----CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEE
Q 032368 40 VEKMLVENAVLVLGR-----PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKL 114 (142)
Q Consensus 40 v~~~~~~~~Vvvy~~-----~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~ 114 (142)
++++++.++|+||++ ++||+|.+++++|++++++|+.++++.+ .+.+++|.+. +|..++|+|||||++
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~-----~g~~tvP~vfi~g~~ 73 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEY-----SNWPTFPQLYVNGEL 73 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHH-----hCCCCCCEEEECCEE
Confidence 367889999999998 5999999999999999999998888754 5667888876 789999999999999
Q ss_pred eeccHHHHhhhhcCChH
Q 032368 115 FGGLDRVMATHISGDLV 131 (142)
Q Consensus 115 IGG~del~~~~~~g~L~ 131 (142)
|||++++.+++++|+|+
T Consensus 74 iGG~~~l~~l~~~g~L~ 90 (90)
T cd03028 74 VGGCDIVKEMHESGELQ 90 (90)
T ss_pred EeCHHHHHHHHHcCCcC
Confidence 99999999999999985
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.91 E-value=1.3e-23 Score=160.24 Aligned_cols=96 Identities=20% Similarity=0.449 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhcCCCEEEEEc-----CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE
Q 032368 34 DTAAKSVEKMLVENAVLVLGR-----PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV 108 (142)
Q Consensus 34 ~~~~~~v~~~~~~~~Vvvy~~-----~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v 108 (142)
.++.++++++++.++|+||++ |+||||++++++|++++++|..++|+.+ .+.+++|.++ +|++|+|+|
T Consensus 100 ~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~-----sg~~TvPqV 172 (204)
T PTZ00062 100 EDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVY-----SNWPTYPQL 172 (204)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHH-----hCCCCCCeE
Confidence 468999999999999999999 6899999999999999999998887754 4567888876 799999999
Q ss_pred EECCEEeeccHHHHhhhhcCChHHHHHh
Q 032368 109 FVGGKLFGGLDRVMATHISGDLVPILKE 136 (142)
Q Consensus 109 fI~G~~IGG~del~~~~~~g~L~~~L~~ 136 (142)
||||++|||+|++++++++|+|.++|.+
T Consensus 173 fI~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 173 YVNGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred EECCEEEcChHHHHHHHHcCChhhhhhh
Confidence 9999999999999999999999999865
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.90 E-value=2.2e-23 Score=137.66 Aligned_cols=83 Identities=28% Similarity=0.487 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
|.+|++|++++||+|++++.+|++++++|++++++.+. +.++++.++ +|..++|+||+||++|||++++.+++
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~-----~g~~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKR-----SGRTTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHH-----hCCCCcCEEEECCEEEeCHHHHHHHH
Confidence 34799999999999999999999999999988887654 344677766 78899999999999999999999999
Q ss_pred hcCChHHHHH
Q 032368 126 ISGDLVPILK 135 (142)
Q Consensus 126 ~~g~L~~~L~ 135 (142)
.+|+|.+.|+
T Consensus 74 ~~g~l~~~~~ 83 (83)
T PRK10638 74 ARGGLDPLLK 83 (83)
T ss_pred HcCCHHHHhC
Confidence 9999999875
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.89 E-value=6.6e-23 Score=133.66 Aligned_cols=79 Identities=32% Similarity=0.526 Sum_probs=71.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhhhcC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISG 128 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~~~g 128 (142)
|+||++++||+|.+++++|++++++|++++++.++ +.++++.+. +|..++|+|||||++|||++++.+++++|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~-----~g~~~vP~i~i~g~~igg~~~~~~~~~~g 73 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQR-----SGRRTVPQIFIGDVHVGGCDDLYALDREG 73 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHH-----hCCCCcCEEEECCEEEcChHHHHHHHHcC
Confidence 68999999999999999999999999999888654 445677765 68999999999999999999999999999
Q ss_pred ChHHHH
Q 032368 129 DLVPIL 134 (142)
Q Consensus 129 ~L~~~L 134 (142)
+|.++|
T Consensus 74 ~l~~~l 79 (79)
T TIGR02181 74 KLDPLL 79 (79)
T ss_pred ChhhhC
Confidence 999865
No 10
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.88 E-value=3.5e-22 Score=130.54 Aligned_cols=81 Identities=30% Similarity=0.510 Sum_probs=73.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCC--cEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVN--PAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~--~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
|++|+++|||+|++++++|++++++ |++++++.+++ .+.++++.+. +|..++|+||+||++|||++++.+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~-----~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEI-----TGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHH-----hCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 6899999999999999999999999 99999998765 4556667765 78899999999999999999999999
Q ss_pred hcCChHHHH
Q 032368 126 ISGDLVPIL 134 (142)
Q Consensus 126 ~~g~L~~~L 134 (142)
++|+|.++|
T Consensus 76 ~~g~l~~~~ 84 (84)
T TIGR02180 76 KSGKLAELL 84 (84)
T ss_pred HcCChhhhC
Confidence 999999875
No 11
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.3e-22 Score=133.48 Aligned_cols=97 Identities=29% Similarity=0.491 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCCCEEEEEc-----CCCchHHHHHHHHHhCC-CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE
Q 032368 35 TAAKSVEKMLVENAVLVLGR-----PGCCMCHVVKTLLLGHG-VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV 108 (142)
Q Consensus 35 ~~~~~v~~~~~~~~Vvvy~~-----~~Cp~C~~ak~lL~~~g-i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v 108 (142)
+..+++++.++.++|++|.| |.|.|+.++..+|...| ++|..++|-. +.++|+.|++. ++|+|+||+
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~--d~eiR~~lk~~-----s~WPT~PQL 75 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQ--DPEIRQGLKEY-----SNWPTFPQL 75 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeecc--CHHHHhccHhh-----cCCCCCcee
Confidence 56789999999999999999 57999999999999999 5666555544 56788999987 899999999
Q ss_pred EECCEEeeccHHHHhhhhcCChHHHHHhcC
Q 032368 109 FVGGKLFGGLDRVMATHISGDLVPILKEAG 138 (142)
Q Consensus 109 fI~G~~IGG~del~~~~~~g~L~~~L~~~g 138 (142)
||+|++|||+|-+.+++++|+|+++|++++
T Consensus 76 yi~GEfvGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 76 YVNGEFVGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred eECCEEeccHHHHHHHHHcchHHHHHHhcC
Confidence 999999999999999999999999999875
No 12
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.3e-22 Score=129.89 Aligned_cols=78 Identities=32% Similarity=0.559 Sum_probs=68.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhhhc
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHIS 127 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~~~ 127 (142)
.|+||++++||||.++|++|+++|++|++++++.++..+.++.+++. +|.++||+|||||++|||++++.++...
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~-----~g~~tvP~I~i~~~~igg~~d~~~~~~~ 76 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRG-----KGQRTVPQIFIGGKHVGGCDDLDALEAK 76 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHh-----CCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence 68999999999999999999999999999999988854444556554 5899999999999999999999998887
Q ss_pred CCh
Q 032368 128 GDL 130 (142)
Q Consensus 128 g~L 130 (142)
+.|
T Consensus 77 ~~l 79 (80)
T COG0695 77 GKL 79 (80)
T ss_pred ccC
Confidence 765
No 13
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.87 E-value=9e-22 Score=128.34 Aligned_cols=80 Identities=40% Similarity=0.699 Sum_probs=73.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhhh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHI 126 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~~ 126 (142)
+|++|++++||+|.+++++|++++++|++++++.+++ .+.+++++++ +|..++|+||++|+++||++++.++.+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQEL-----TGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHH-----hCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 5899999999999999999999999999999999877 5566777776 789999999999999999999999999
Q ss_pred cCChHH
Q 032368 127 SGDLVP 132 (142)
Q Consensus 127 ~g~L~~ 132 (142)
+|+|++
T Consensus 76 ~g~l~~ 81 (82)
T cd03419 76 SGKLVK 81 (82)
T ss_pred cCCccC
Confidence 999975
No 14
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.86 E-value=2.9e-21 Score=140.65 Aligned_cols=87 Identities=24% Similarity=0.355 Sum_probs=74.6
Q ss_pred CEEEEEcC------CCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHH
Q 032368 48 AVLVLGRP------GCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRV 121 (142)
Q Consensus 48 ~Vvvy~~~------~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del 121 (142)
+|+||+++ +||+|.++|++|++++|+|++++|+.+ .+++++|++++. ..+++.++|+|||+|++|||++|+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~--~~~~~EL~~~~g-~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD--SGFREELRELLG-AELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhC-CCCCCCCCCEEEECCEEEecHHHH
Confidence 58999999 999999999999999999987777654 556678877631 112458999999999999999999
Q ss_pred HhhhhcCChHHHHHhc
Q 032368 122 MATHISGDLVPILKEA 137 (142)
Q Consensus 122 ~~~~~~g~L~~~L~~~ 137 (142)
.+++++|+|.++|+.+
T Consensus 78 ~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 78 LRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHcCCHHHHHhhc
Confidence 9999999999999874
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.85 E-value=4.2e-21 Score=123.48 Aligned_cols=74 Identities=28% Similarity=0.479 Sum_probs=64.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCce-eeeEEEECCEEeeccHHHHhhhh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGII-QFPAVFVGGKLFGGLDRVMATHI 126 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~-tvP~vfI~G~~IGG~del~~~~~ 126 (142)
+|+||++++||+|.+++++|++++++|++++++.+ .+.++++.+. +|.. ++|+|||+|++|||+++++++++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~-----~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINR-----SGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHH-----hCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 58999999999999999999999999998888865 3444666554 4555 99999999999999999999998
Q ss_pred cC
Q 032368 127 SG 128 (142)
Q Consensus 127 ~g 128 (142)
+|
T Consensus 74 ~g 75 (75)
T cd03418 74 KG 75 (75)
T ss_pred Cc
Confidence 76
No 16
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.84 E-value=6.3e-21 Score=122.80 Aligned_cols=72 Identities=26% Similarity=0.393 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
.+|++|++++||+|++|+.+|++++++|+.++++.+++ .++++.++ ++..++|+||+||++|||++|+.+++
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~--~~~el~~~-----~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPE--RKAELEER-----TGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHH--HHHHHHHH-----hCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 36999999999999999999999999999888877653 45778776 67889999999999999999999875
No 17
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.84 E-value=1e-20 Score=123.85 Aligned_cols=74 Identities=30% Similarity=0.557 Sum_probs=63.8
Q ss_pred HhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHH
Q 032368 43 MLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVM 122 (142)
Q Consensus 43 ~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~ 122 (142)
+.+.++|+||++++||+|+++|++|+++|++|+.++++.+.+. +++... +|..++|+||+||++|||++++.
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~---~~~~~~-----~g~~~vP~i~i~g~~igG~~~l~ 75 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARG---RSLRAV-----TGATTVPQVFIGGKLIGGSDELE 75 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHH---HHHHHH-----HCCCCcCeEEECCEEEcCHHHHH
Confidence 4467899999999999999999999999999999988876443 345444 68899999999999999999998
Q ss_pred hh
Q 032368 123 AT 124 (142)
Q Consensus 123 ~~ 124 (142)
+.
T Consensus 76 ~~ 77 (79)
T TIGR02190 76 AY 77 (79)
T ss_pred HH
Confidence 75
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.83 E-value=2.9e-20 Score=119.28 Aligned_cols=70 Identities=26% Similarity=0.534 Sum_probs=61.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
+|+||++++||+|.+++++|++++++|+.++++.+.+. ++++.+ +|..++|+|||||++|||++|+.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~---~~~~~~-----~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG---RSLRAV-----TGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH---HHHHHH-----hCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999999999999999999999999999988876532 455554 68899999999999999999998763
No 19
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.80 E-value=2.3e-19 Score=119.39 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=57.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEeeCCCCHHHHHHHhhhhhccCCCc--eeeeEEEECCEEeeccHHH
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGV-----NPAVFEVADGDEAAVLDELSRIDVENGGGI--IQFPAVFVGGKLFGGLDRV 121 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi-----~~~~i~id~~~~~~~~~~L~~~~~~~~~g~--~tvP~vfI~G~~IGG~del 121 (142)
|+||++++||+|.+|+++|+++++ +|+.++++. +...++++.+. +|. .+||+|||||++|||++|+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~--~~~~~~~l~~~-----~g~~~~tVP~ifi~g~~igG~~dl 74 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHA--EGISKADLEKT-----VGKPVETVPQIFVDEKHVGGCTDF 74 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCC--CHHHHHHHHHH-----hCCCCCCcCeEEECCEEecCHHHH
Confidence 799999999999999999999964 455555553 33223556655 454 7999999999999999999
Q ss_pred HhhhhcC
Q 032368 122 MATHISG 128 (142)
Q Consensus 122 ~~~~~~g 128 (142)
.++.+++
T Consensus 75 ~~~~~~~ 81 (86)
T TIGR02183 75 EQLVKEN 81 (86)
T ss_pred HHHHHhc
Confidence 9987664
No 20
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.79 E-value=2.8e-19 Score=148.92 Aligned_cols=91 Identities=20% Similarity=0.375 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCH-HHHHHHhh--hhhccCCCceeeeEEEECCEEeeccHHHH
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEA-AVLDELSR--IDVENGGGIIQFPAVFVGGKLFGGLDRVM 122 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~-~~~~~L~~--~~~~~~~g~~tvP~vfI~G~~IGG~del~ 122 (142)
+.+|+||++++||+|+++|++|++.||+|++++||.++.. +..+++.+ +. ..+|..+||+|||||++|||++++.
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~--~~~g~~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILL--VEEHIRTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhcccc--ccCCCCccCeEEECCEEEeCchHHH
Confidence 3579999999999999999999999999999999866542 22223221 00 1368899999999999999999998
Q ss_pred hhhhcCChHHHHHhcCcc
Q 032368 123 ATHISGDLVPILKEAGAL 140 (142)
Q Consensus 123 ~~~~~g~L~~~L~~~g~l 140 (142)
+ .+|+|.++|+..|++
T Consensus 79 ~--~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 79 A--RAGEVIARVKGSSLT 94 (410)
T ss_pred H--HhCCHHHHhcCCccc
Confidence 7 899999999887764
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.79 E-value=3.1e-19 Score=118.09 Aligned_cols=75 Identities=24% Similarity=0.384 Sum_probs=60.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHh-----CCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLG-----HGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVM 122 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~-----~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~ 122 (142)
+|+||++++||+|++|+++|++ .+++|+.++++.+.. ..+++.++. +.+..++|+|||||++|||++|+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~--~~~el~~~~---~~~~~~vP~ifi~g~~igg~~~~~ 76 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGI--SKADLEKTV---GKPVETVPQIFVDQKHIGGCTDFE 76 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChH--HHHHHHHHH---CCCCCcCCEEEECCEEEcCHHHHH
Confidence 6999999999999999999999 788888888876542 235566552 113479999999999999999999
Q ss_pred hhhhc
Q 032368 123 ATHIS 127 (142)
Q Consensus 123 ~~~~~ 127 (142)
++.+.
T Consensus 77 ~~~~~ 81 (85)
T PRK11200 77 AYVKE 81 (85)
T ss_pred HHHHH
Confidence 87653
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.76 E-value=3.7e-18 Score=107.14 Aligned_cols=71 Identities=28% Similarity=0.599 Sum_probs=62.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
+|++|++++||+|++++.+|++++++|..++++.+.+ .+++|.++ ++..++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~--~~~~l~~~-----~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE--LREELKEL-----SGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH--HHHHHHHH-----hCCCCcCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999998777766543 55777776 68899999999999999999998875
No 23
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.4e-18 Score=128.82 Aligned_cols=95 Identities=29% Similarity=0.538 Sum_probs=85.7
Q ss_pred HHHHHHHHhcCCCEEEEEc-----CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 36 AAKSVEKMLVENAVLVLGR-----PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 36 ~~~~v~~~~~~~~Vvvy~~-----~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
...+++++++.++|++|.| |.|.+++++..+|.+++++|..++|-.+ .++|+.++.+ +.|+|+||+||
T Consensus 128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D--eelRqglK~f-----SdWPTfPQlyI 200 (227)
T KOG0911|consen 128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD--EELRQGLKEF-----SDWPTFPQLYV 200 (227)
T ss_pred HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC--HHHHHHhhhh-----cCCCCccceeE
Confidence 5669999999999999999 4799999999999999999887776665 4577888886 89999999999
Q ss_pred CCEEeeccHHHHhhhhcCChHHHHHhc
Q 032368 111 GGKLFGGLDRVMATHISGDLVPILKEA 137 (142)
Q Consensus 111 ~G~~IGG~del~~~~~~g~L~~~L~~~ 137 (142)
+|+++||+|-+.+++++|+|+..|+++
T Consensus 201 ~GEFiGGlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 201 KGEFIGGLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred CCEeccCcHHHHHHhhcccHHHHhhcC
Confidence 999999999999999999999999864
No 24
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.72 E-value=1.2e-17 Score=103.50 Aligned_cols=60 Identities=30% Similarity=0.646 Sum_probs=54.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEe
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLF 115 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I 115 (142)
|++|++++||+|.+++++|++++++|++++++.++ +.+++|++. +|..++|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~-----~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKEL-----SGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHH-----HSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHH-----cCCCccCEEEECCEEC
Confidence 79999999999999999999999999999888875 455778776 5889999999999987
No 25
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.71 E-value=3e-17 Score=110.87 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=68.9
Q ss_pred CEEEEEcCC------CchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHH
Q 032368 48 AVLVLGRPG------CCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRV 121 (142)
Q Consensus 48 ~Vvvy~~~~------Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del 121 (142)
.|+||+++- =-.|++++++|+..+|+|+.++|+.+ .+.+++|.+... ...|..++|||||||+||||+||+
T Consensus 1 ~i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d--~~~r~em~~~~~-~~~g~~tvPQIFi~~~~iGg~ddl 77 (92)
T cd03030 1 VIKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN--EENRQWMRENVP-NENGKPLPPQIFNGDEYCGDYEAF 77 (92)
T ss_pred CEEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC--HHHHHHHHHhcC-CCCCCCCCCEEEECCEEeeCHHHH
Confidence 378888763 25799999999999999998888765 445577776520 002468999999999999999999
Q ss_pred HhhhhcCChHHHHH
Q 032368 122 MATHISGDLVPILK 135 (142)
Q Consensus 122 ~~~~~~g~L~~~L~ 135 (142)
.+++++|+|.++|+
T Consensus 78 ~~l~e~g~L~~lLk 91 (92)
T cd03030 78 FEAKENNTLEEFLK 91 (92)
T ss_pred HHHHhCCCHHHHhC
Confidence 99999999999985
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.64 E-value=4.1e-16 Score=100.11 Aligned_cols=63 Identities=22% Similarity=0.504 Sum_probs=53.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCE-EeeccH
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGK-LFGGLD 119 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~-~IGG~d 119 (142)
|+||++++||+|++++++|++++++|++++++.++. ..+++++ .|..+||+|+++|+ ++|||+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~--~~~~~~~------~g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPE--AIDYVKA------QGFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHH--HHHHHHH------cCCcccCEEEECCCcEEeccC
Confidence 689999999999999999999999999988886543 3466654 47789999999775 999997
No 27
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.64 E-value=7.7e-16 Score=101.58 Aligned_cols=64 Identities=23% Similarity=0.468 Sum_probs=55.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLD 119 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~d 119 (142)
+|+||++++||+|+++|.+|++.|++|+.++++.+++ ..++++. .|..++|+|++++..++||+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~--~~~~~~~------~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPE--AAETLRA------QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHH--HHHHHHH------cCCCCcCEEEECCEEEecCC
Confidence 6999999999999999999999999999998887653 2345543 47889999999999999997
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.44 E-value=4.1e-13 Score=84.47 Aligned_cols=65 Identities=25% Similarity=0.435 Sum_probs=53.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLD 119 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~d 119 (142)
.|++|+.+|||+|++++.+|++.+++|..++++.++. ..+++.+. .|..++|+++++|+.++|++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~--~~~~~~~~-----~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSA--AREEVLKV-----LGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHH--HHHHHHHH-----hCCCcccEEEECCEEEeeCC
Confidence 4899999999999999999999999988777765443 33555444 57889999999999999986
No 29
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.2e-13 Score=106.06 Aligned_cols=99 Identities=23% Similarity=0.346 Sum_probs=78.7
Q ss_pred HHHHHHHHhc---CCCEEEEEcC------CCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeee
Q 032368 36 AAKSVEKMLV---ENAVLVLGRP------GCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFP 106 (142)
Q Consensus 36 ~~~~v~~~~~---~~~Vvvy~~~------~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP 106 (142)
+....++... +..|+||+++ .--.|..++.+|++++|.|.+.||.. +..++++|++++.. .....++|
T Consensus 117 ~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSM--d~~fr~EL~~~lg~-~~~~~~LP 193 (281)
T KOG2824|consen 117 LLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSM--DSEFREELQELLGE-DEKAVSLP 193 (281)
T ss_pred chhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccc--cHHHHHHHHHHHhc-ccccCccC
Confidence 3334444443 4589999996 57899999999999999988776655 45677888887621 12467899
Q ss_pred EEEECCEEeeccHHHHhhhhcCChHHHHHhc
Q 032368 107 AVFVGGKLFGGLDRVMATHISGDLVPILKEA 137 (142)
Q Consensus 107 ~vfI~G~~IGG~del~~~~~~g~L~~~L~~~ 137 (142)
+|||+|++|||.++++++++.|+|.++|+..
T Consensus 194 rVFV~GryIGgaeeV~~LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 194 RVFVKGRYIGGAEEVVRLNEEGKLGKLLKGI 224 (281)
T ss_pred eEEEccEEeccHHHhhhhhhcchHHHHHhcC
Confidence 9999999999999999999999999999764
No 30
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.42 E-value=9.3e-13 Score=82.76 Aligned_cols=66 Identities=26% Similarity=0.533 Sum_probs=56.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDR 120 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~de 120 (142)
+|++|+.++||+|.+++.+|++.+++|..++++.+. ...+++.++ ++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~--~~~~~~~~~-----~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDP--EALEELKKL-----NGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCH--HHHHHHHHH-----cCCcccCEEEECCEEEecCCH
Confidence 489999999999999999999999999988887643 344566665 567899999999999999984
No 31
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.38 E-value=1.8e-12 Score=82.84 Aligned_cols=66 Identities=18% Similarity=0.344 Sum_probs=51.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE-CCEEeeccH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV-GGKLFGGLD 119 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI-~G~~IGG~d 119 (142)
+|++|+.+|||+|++++.+|++++++|+.++++.++.. .+++..+ ..+..++|++++ ||+.+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~--~~~~~~~----~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGA--ADRVVSV----NNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhH--HHHHHHH----hCCCceeCEEEECCCeEecCCC
Confidence 48999999999999999999999999998887766543 3555554 137889999977 567765554
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.29 E-value=9.6e-12 Score=78.07 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhC-----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEee
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGH-----GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFG 116 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~-----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IG 116 (142)
.|++|+++|||+|++++.+|+++ ++++. .+|.+.+.+ +.+. .|..++|+++++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~--~id~~~~~~----l~~~-----~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAE--MIDAAEFPD----LADE-----YGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEE--EEEcccCHh----HHHH-----cCCcccCEEEECCEEEE
Confidence 58999999999999999999986 34444 444444432 2222 57789999999999875
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.17 E-value=1.9e-10 Score=78.58 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=59.6
Q ss_pred CEEEEEcCCC------chHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhh----ccCCCceeeeEEEECCEEeec
Q 032368 48 AVLVLGRPGC------CMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDV----ENGGGIIQFPAVFVGGKLFGG 117 (142)
Q Consensus 48 ~Vvvy~~~~C------p~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~----~~~~g~~tvP~vfI~G~~IGG 117 (142)
.|.||+++.- ..|.++..+|+..+|+|+.+||..++ +.++.+++... ....+..-.||||+|++++|+
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e--~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDE--EARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-H--HHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCH--HHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 4788887643 35679999999999999988777744 44567766520 001234555899999999999
Q ss_pred cHHHHhhhhcCChHHHHH
Q 032368 118 LDRVMATHISGDLVPILK 135 (142)
Q Consensus 118 ~del~~~~~~g~L~~~L~ 135 (142)
++++.++.++++|.+.|+
T Consensus 80 ye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 80 YEDFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHHHCTT-HHHHHT
T ss_pred HHHHHHHHhhCHHHHHhC
Confidence 999999999999999986
No 34
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.01 E-value=2.2e-09 Score=65.83 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=56.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
++|+.++||+|.+++.+|+..+++|+.++++...... .++.+. ++..++|.++++|..+++...+.+.
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~--~~~~~~-----~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQ--EEFLAL-----NPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCC--HHHHhc-----CCCCCCCEEEECCEEEEcHHHHHHH
Confidence 6899999999999999999999999999888765432 134444 6788999999999999988776553
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.99 E-value=3.1e-09 Score=68.67 Aligned_cols=70 Identities=16% Similarity=0.263 Sum_probs=54.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE--CCEEeeccHHHHhhh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV--GGKLFGGLDRVMATH 125 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI--~G~~IGG~del~~~~ 125 (142)
+++|+.+.||+|.+++.+|+++|++|+.++++.... ..+++..+ ++..++|++.. +|..+.+...+.+..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~--~~~~~~~~-----~p~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSP--KRDKFLEK-----GGKVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChH--HHHHHHHh-----CCCCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 689999999999999999999999999988865432 22455554 67789999977 357777777766653
No 36
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.99 E-value=2.7e-09 Score=68.84 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=43.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHh----CCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCE
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLG----HGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGK 113 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~----~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~ 113 (142)
.|++|+.+|||+|+.++..|++ ++..+.+..||.+.+.+. .++ .|..++|+++++|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~---~~~------~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK---AME------YGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH---HHH------cCCccCCEEEECCE
Confidence 5899999999999999999875 344456667777665432 222 47889999999997
No 37
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.92 E-value=5e-09 Score=70.09 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhC-----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE
Q 032368 35 TAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGH-----GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF 109 (142)
Q Consensus 35 ~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~-----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf 109 (142)
...+.++++.+.-.|.+|+.+|||+|..++.+++++ ++++..++++. ..+ ...+ .+..++|.++
T Consensus 2 ~~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~--~~e---~a~~------~~V~~vPt~v 70 (89)
T cd03026 2 DLLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGAL--FQD---EVEE------RGIMSVPAIF 70 (89)
T ss_pred hHHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHh--CHH---HHHH------cCCccCCEEE
Confidence 356777877777799999999999999999998776 34444444443 322 2222 5888999999
Q ss_pred ECCEEee
Q 032368 110 VGGKLFG 116 (142)
Q Consensus 110 I~G~~IG 116 (142)
+||+.++
T Consensus 71 idG~~~~ 77 (89)
T cd03026 71 LNGELFG 77 (89)
T ss_pred ECCEEEE
Confidence 9998765
No 38
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.92 E-value=7.4e-09 Score=66.49 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=53.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC----CEEeeccHHHHh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG----GKLFGGLDRVMA 123 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~----G~~IGG~del~~ 123 (142)
++.+|+.+.||+|++++.+|.+.|++|+.++++... ..+++ . ++..++|+++++ |..+.....+.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~~~-~-----~~~~~vP~l~~~~~~~~~~l~eS~~I~~ 70 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKEIK-W-----SSYKKVPILRVESGGDGQQLVDSSVIIS 70 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHHHH-H-----hCCCccCEEEECCCCCccEEEcHHHHHH
Confidence 588999999999999999999999999988775432 12343 2 567899999987 777777777666
Q ss_pred h
Q 032368 124 T 124 (142)
Q Consensus 124 ~ 124 (142)
.
T Consensus 71 y 71 (77)
T cd03040 71 T 71 (77)
T ss_pred H
Confidence 4
No 39
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.91 E-value=7.2e-09 Score=65.61 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=53.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC-CEEeeccHHHHhhh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG-GKLFGGLDRVMATH 125 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~-G~~IGG~del~~~~ 125 (142)
.+|+.++||+|++++-+|...|++|+.+.++..... ..+ +. ++..++|+++++ |..+++...+.+..
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~---~~~-~~-----~~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA---TPI-RM-----IGAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH---HHH-Hh-----cCCCccCEEEeCCCeEeehHHHHHHHH
Confidence 589999999999999999999999998887754322 222 22 466789999997 88999998887654
No 40
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.81 E-value=3.5e-08 Score=62.58 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=52.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC-CEEeeccHHHHh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG-GKLFGGLDRVMA 123 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~-G~~IGG~del~~ 123 (142)
++|+.++||+|.+++-+|+++|++|+.++++..... +++.++ +...++|++..+ |..+.....+.+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~---~~~~~~-----np~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKP---AEMLAA-----SPKGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCC---HHHHHH-----CCCCCCCEEEECCCcEEecHHHHHH
Confidence 689999999999999999999999999988875432 345444 577899999996 887766655544
No 41
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.77 E-value=5.4e-08 Score=61.48 Aligned_cols=68 Identities=15% Similarity=0.254 Sum_probs=53.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+++|+.+.||+|++++.+|+..|++|+.++++..... .++.++ +...++|++..+|..+.....+.+.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~---~~~~~~-----~p~~~vP~l~~~~~~l~es~aI~~y 68 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPP---EDLAEL-----NPYGTVPTLVDRDLVLYESRIIMEY 68 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCC---HHHHhh-----CCCCCCCEEEECCEEEEcHHHHHHH
Confidence 4789999999999999999999999999888765432 344444 4567999998888877766666554
No 42
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.77 E-value=3.1e-08 Score=62.39 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=51.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE-CCEEeeccHHHHh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV-GGKLFGGLDRVMA 123 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI-~G~~IGG~del~~ 123 (142)
+.+|+.++||+|++++-+|...+++|+.+.++.........++.++ +...++|++.+ ||..+.....+.+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~-----~p~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAK-----NPAGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhh-----CCCCCCCEEEeCCCCEEecHHHHHH
Confidence 3689999999999999999999999998888764321111345554 56789999997 5666655554443
No 43
>PHA02125 thioredoxin-like protein
Probab=98.75 E-value=4.5e-08 Score=63.07 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=42.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEee
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFG 116 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IG 116 (142)
|++|+.+||+.|+.++.+|++. .+.++++|.++..+ +.+. .+..++|++. +|+.++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~~----l~~~-----~~v~~~PT~~-~g~~~~ 57 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGVE----LTAK-----HHIRSLPTLV-NTSTLD 57 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCHH----HHHH-----cCCceeCeEE-CCEEEE
Confidence 7999999999999999999864 56678888776643 3222 4778999976 776543
No 44
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.74 E-value=6.3e-08 Score=61.39 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=53.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
+++|+.+.||+|++++-+|+..|++|+.+.++........+++.++ +....+|.+..+|..+-....+.+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~-----~p~~~vP~l~~~~~~l~es~aI~~ 70 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKL-----NPQHTVPTLVDNGFVLWESHAILI 70 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhh-----CcCCCCCEEEECCEEEEcHHHHHH
Confidence 3689999999999999999999999999888764432222455554 567799999988877666555544
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.72 E-value=1.2e-07 Score=62.96 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC-CEEeeccHHHHhh
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG-GKLFGGLDRVMAT 124 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~-G~~IGG~del~~~ 124 (142)
...+++|+.+.||+|.+++-+|...|++|+.++++..... +++.+. +...++|++.++ |..+.....+.+.
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~---~~~~~~-----np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKP---DWFLEK-----NPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCc---HHHHhh-----CCCCCcCEEEECCCCEEECHHHHHHh
Confidence 3469999999999999999999999999999888765422 334444 567899999998 7877776655543
No 46
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.71 E-value=7.2e-08 Score=62.39 Aligned_cols=55 Identities=27% Similarity=0.584 Sum_probs=41.8
Q ss_pred CEEEEEcCCCchHHHH----HHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEe
Q 032368 48 AVLVLGRPGCCMCHVV----KTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLF 115 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~a----k~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I 115 (142)
.|.+|+ +|||.|+.+ ++++++++.+++++++|. . ++..+ .|..++|++++||+.+
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~---~~a~~------~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---M---NEILE------AGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---H---HHHHH------cCCCcCCEEEECCEEE
Confidence 366666 999999999 667788888888888872 1 12222 4788999999999765
No 47
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.67 E-value=2.1e-08 Score=69.62 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=33.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
|+||+.++||+|++|+++|+++|++|+++++..++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~ 36 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPP 36 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcc
Confidence 579999999999999999999999999999987764
No 48
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.63 E-value=2e-07 Score=58.60 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=53.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
+++|+.+.||+|.+++-+|...|++|+.+.++........+++.++ +...++|.+..+|..+.....+.+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~p~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLAL-----NPNGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHh-----CCCCCCCEEEECCEEEEcHHHHHH
Confidence 3689999999999999999999999999888754321122345444 566789999999988876665544
No 49
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.62 E-value=5.8e-08 Score=66.38 Aligned_cols=36 Identities=17% Similarity=0.386 Sum_probs=33.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
|+||++++||+|++++++|++.|++|+++++...+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~ 36 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPP 36 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCC
Confidence 579999999999999999999999999999987654
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.62 E-value=5.1e-08 Score=83.34 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=61.0
Q ss_pred CCCccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeE
Q 032368 28 GVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPA 107 (142)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~ 107 (142)
+....+++..+.++++-....|.+|.++.||||.++.+.++++.+....+..+..+..++.+...+ ++..+||+
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~------~~v~~VP~ 173 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEA------LGIQGVPA 173 (515)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHh------cCCcccCE
Confidence 445678889999998888889999999999999999999988766432223333222233333333 57789999
Q ss_pred EEECCEEeec
Q 032368 108 VFVGGKLFGG 117 (142)
Q Consensus 108 vfI~G~~IGG 117 (142)
+||||+.++.
T Consensus 174 ~~i~~~~~~~ 183 (515)
T TIGR03140 174 VFLNGEEFHN 183 (515)
T ss_pred EEECCcEEEe
Confidence 9999987643
No 51
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.59 E-value=7.5e-08 Score=82.33 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=60.0
Q ss_pred CCCCccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCc---EEEEeeCCCCHHHHHHHhhhhhccCCCce
Q 032368 27 GGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNP---AVFEVADGDEAAVLDELSRIDVENGGGII 103 (142)
Q Consensus 27 ~~~~~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~---~~i~id~~~~~~~~~~L~~~~~~~~~g~~ 103 (142)
++....+.+..+.++++.+...|.+|.+++||||.++.+.++++.+.. +...||..... +...+ ++..
T Consensus 98 ~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~---~~~~~------~~v~ 168 (517)
T PRK15317 98 GHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ---DEVEA------RNIM 168 (517)
T ss_pred CCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH---hHHHh------cCCc
Confidence 344567888999999988888999999999999999999998876542 22233333332 33332 5778
Q ss_pred eeeEEEECCEEee
Q 032368 104 QFPAVFVGGKLFG 116 (142)
Q Consensus 104 tvP~vfI~G~~IG 116 (142)
+||++|+||+.+.
T Consensus 169 ~VP~~~i~~~~~~ 181 (517)
T PRK15317 169 AVPTVFLNGEEFG 181 (517)
T ss_pred ccCEEEECCcEEE
Confidence 9999999998654
No 52
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.57 E-value=3.9e-07 Score=63.19 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=41.7
Q ss_pred HHHhcCCCEEEE-EcCCCchHHHHHHHHHhCCCC---cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 41 EKMLVENAVLVL-GRPGCCMCHVVKTLLLGHGVN---PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 41 ~~~~~~~~Vvvy-~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
+.+.+...+++| +.+|||+|+.++.+|++.... ..+..+|.+.+.+ +.+. .+..++|++++
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~----l~~~-----~~v~~vPt~~i 81 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKE----KAEK-----YGVERVPTTIF 81 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHH----HHHH-----cCCCcCCEEEE
Confidence 335555556666 678999999999999876533 2455566655543 3332 57889999988
No 53
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.56 E-value=1e-06 Score=57.71 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=40.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECC
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGV--NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGG 112 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi--~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G 112 (142)
+|++|++++|+.|..++.+|.+... ++++..+|.+.+.+ +... ++ ..+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~-----Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEK-----YG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHH-----SC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHH-----hc-CCCCEEEEcC
Confidence 4899999999999999999997653 45666667766654 3322 45 3799999999
No 54
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.54 E-value=1.6e-07 Score=67.04 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=33.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
|+||+.++||+|++|+++|++.|++|+++++..++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChh
Confidence 789999999999999999999999999999877654
No 55
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.54 E-value=3.2e-07 Score=58.80 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=56.3
Q ss_pred EEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 51 VLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 51 vy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
+|+.++||+|++++-+|...|++|++++++..... .++.++ ++..++|++..||..+.+...+.+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~---~~~~~~-----~p~~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKR---PEFLKL-----NPKGKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTS---HHHHHH-----STTSBSSEEEETTEEEESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccch---hHHHhh-----cccccceEEEECCEEEeCHHHHHHHH
Confidence 68899999999999999999999999999876542 445554 57789999999999999988877653
No 56
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.49 E-value=7.8e-07 Score=68.04 Aligned_cols=74 Identities=8% Similarity=0.165 Sum_probs=52.0
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCC---cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeE
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVN---PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPA 107 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~ 107 (142)
..+.+..+.++++-....|++|+.+|||+|..++.+++++... ..+..+|.+.+.+..+ . .+..++|+
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~----~-----~~V~~vPt 189 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAE----K-----YGVMSVPK 189 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHH----H-----hCCccCCE
Confidence 4556667777775556678889999999999999999886432 3344566665543222 2 47889999
Q ss_pred EEECCE
Q 032368 108 VFVGGK 113 (142)
Q Consensus 108 vfI~G~ 113 (142)
++++++
T Consensus 190 l~i~~~ 195 (215)
T TIGR02187 190 IVINKG 195 (215)
T ss_pred EEEecC
Confidence 999753
No 57
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.42 E-value=5.5e-07 Score=62.71 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=33.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
|+||+.++|++|++|+++|++.|++|+++++..++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~ 37 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPL 37 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcc
Confidence 789999999999999999999999999999877653
No 58
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.42 E-value=4.3e-07 Score=63.40 Aligned_cols=36 Identities=19% Similarity=0.570 Sum_probs=32.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
|++|+.++||+|++|+++|++.|++|+++++...+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~ 36 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGP 36 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChh
Confidence 579999999999999999999999999999876554
No 59
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.41 E-value=7.3e-07 Score=63.73 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=33.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
|+||+.++|+.|++++++|++.|++|+++++..++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~ 37 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSM 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcC
Confidence 789999999999999999999999999999987653
No 60
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.40 E-value=4.8e-07 Score=64.77 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=32.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
|+||+.++|+.|++|+++|+++|++|+++++..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 78999999999999999999999999999987664
No 61
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.38 E-value=1.8e-06 Score=55.26 Aligned_cols=70 Identities=9% Similarity=0.139 Sum_probs=54.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
+++|..+.||+|++++-+|.++|++|+.+.++.........++.++ +....+|.+..||..+.....+.+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~i-----nP~g~vP~L~~~g~~l~Es~aI~~ 70 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRL-----NPTGEVPVLIHGDNIICDPTQIID 70 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHh-----CcCCCCCEEEECCEEEEcHHHHHH
Confidence 4789999999999999999999999999988764321112345555 577899999999988777665554
No 62
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.36 E-value=3.5e-06 Score=53.56 Aligned_cols=72 Identities=15% Similarity=-0.006 Sum_probs=55.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
+++|+.+.||+|.+++-+|...|++|+.+.++........+.+.++ +....+|.+..+|..+.....+.+..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~P~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLAR-----NPFGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhh-----CCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 6799999999999999999999999998888764321111345544 56788999998888877777666543
No 63
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.30 E-value=8.6e-06 Score=57.35 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHHhc-CCC-EEEEEcCCCchHHHHHHHHHhC----CCCcEEEEeeCCC--C---H-HHHHHHhhhhhccCCCceeeeE
Q 032368 40 VEKMLV-ENA-VLVLGRPGCCMCHVVKTLLLGH----GVNPAVFEVADGD--E---A-AVLDELSRIDVENGGGIIQFPA 107 (142)
Q Consensus 40 v~~~~~-~~~-Vvvy~~~~Cp~C~~ak~lL~~~----gi~~~~i~id~~~--~---~-~~~~~L~~~~~~~~~g~~tvP~ 107 (142)
+++.++ ... |+.|+.+|||+|+.+...|+++ ++++.++++|.+. + . ++.+..+... ..++..++|+
T Consensus 16 ~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~--i~~~i~~~PT 93 (122)
T TIGR01295 16 ALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG--IPTSFMGTPT 93 (122)
T ss_pred HHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcC--CcccCCCCCE
Confidence 444443 333 8889999999999987776654 4556667776543 1 1 2222222210 0123444676
Q ss_pred E--EECCEEeecc
Q 032368 108 V--FVGGKLFGGL 118 (142)
Q Consensus 108 v--fI~G~~IGG~ 118 (142)
+ |-+|+.++..
T Consensus 94 ~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 94 FVHITDGKQVSVR 106 (122)
T ss_pred EEEEeCCeEEEEE
Confidence 6 5589877655
No 64
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.30 E-value=1.1e-06 Score=76.03 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=56.9
Q ss_pred CCCccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhC-----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCc
Q 032368 28 GVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGH-----GVNPAVFEVADGDEAAVLDELSRIDVENGGGI 102 (142)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~-----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~ 102 (142)
+....+.+..+.++++-....|.+|..++||+|.++.+.+++. +|..+.+++...+ +...+ ++.
T Consensus 459 ~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~-----~~~~~------~~v 527 (555)
T TIGR03143 459 PGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP-----DLKDE------YGI 527 (555)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH-----HHHHh------CCc
Confidence 4556788899999988778889999999999999988876654 4555555444432 22223 588
Q ss_pred eeeeEEEECCEE
Q 032368 103 IQFPAVFVGGKL 114 (142)
Q Consensus 103 ~tvP~vfI~G~~ 114 (142)
.+||.++|||+.
T Consensus 528 ~~vP~~~i~~~~ 539 (555)
T TIGR03143 528 MSVPAIVVDDQQ 539 (555)
T ss_pred eecCEEEECCEE
Confidence 999999999974
No 65
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.29 E-value=1.2e-06 Score=60.25 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=33.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
|+||+.++|+.|++|+++|++.|++|+++++..++-
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~ 36 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGL 36 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCC
Confidence 589999999999999999999999999999987653
No 66
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.27 E-value=4.9e-06 Score=58.26 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=42.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC----cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEee
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN----PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLFG 116 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~----~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~IG 116 (142)
-|+-|+.+||+.|+.+...|+++.-+ ..++.||.+...++.+++ +..++|++ |-+|+.++
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~---------~V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMY---------ELYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHc---------CCCCCCEEEEEECCEEEE
Confidence 46669999999999999998776533 256777887775443333 55566665 66898864
No 67
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.24 E-value=7.4e-06 Score=51.78 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=46.4
Q ss_pred CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 55 PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
+.||+|.+++.+|+..|++|+.++++... + +....+|++..+|+.+.++..+.+..
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~----------~-----~p~g~vP~l~~~g~~l~es~~I~~yL 69 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW----------R-----SPTGKLPFLELNGEKIADSEKIIEYL 69 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc----------c-----CCCcccCEEEECCEEEcCHHHHHHHH
Confidence 38999999999999999999988876532 2 45568999999999999888776654
No 68
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.21 E-value=5.2e-06 Score=55.96 Aligned_cols=66 Identities=11% Similarity=0.200 Sum_probs=39.1
Q ss_pred HHHHhcCCC--EEEEEcCCCchHHHHHHHH-------HhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 40 VEKMLVENA--VLVLGRPGCCMCHVVKTLL-------LGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 40 v~~~~~~~~--Vvvy~~~~Cp~C~~ak~lL-------~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
++++++.++ ++.|+.+||++|++....+ +.++-.+.++.+|.+.+.....++.+. .+..++|++++
T Consensus 4 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~-----~~i~~~Pti~~ 78 (104)
T cd02953 4 LAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKR-----FGVFGPPTYLF 78 (104)
T ss_pred HHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHH-----cCCCCCCEEEE
Confidence 444554443 7789999999999987554 122224566666665432211333332 46778897754
No 69
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.21 E-value=7.1e-06 Score=51.49 Aligned_cols=69 Identities=9% Similarity=0.030 Sum_probs=52.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
++|+.+.|+.|.+++.+|...|++|+.+.++........+++.++ +....+|++..+|..+.....+.+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~-----~p~~~vP~l~~~~~~l~es~aI~~ 70 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRAL-----NPQGLVPTLVIDGLVLTQSLAIIE 70 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHh-----CCCCCCCEEEECCEEEEcHHHHHH
Confidence 688889999999999999999999999888764321111345544 567899999999888766665544
No 70
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.19 E-value=1.5e-05 Score=50.54 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=51.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCC-ceeeeEEEECCEEeeccHHHHhh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGG-IIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g-~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+.+|+.+.||+|.+++-+|...|++|+.+.++..... .++.++ +. ...+|.+..+|..+.....+.+.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~---~~~~~~-----~p~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKS---ELLLAS-----NPVHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCC---HHHHHh-----CCCCCCCCEEEECCEEeehHHHHHHH
Confidence 3689999999999999999999999998877654221 233333 33 47899999888877776666554
No 71
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.17 E-value=1.1e-05 Score=53.91 Aligned_cols=62 Identities=18% Similarity=0.357 Sum_probs=41.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhC----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE--CCEEeecc
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGH----GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV--GGKLFGGL 118 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI--~G~~IGG~ 118 (142)
-+++|+.+||+.|+.++..|++. +-.+.+..+|.+.+.++.++ .+..++|.+++ +|+.++..
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~---------~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEA---------AGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHH---------CCCeeccEEEEEECCeEEEEE
Confidence 46788889999999998888663 22355667777666543322 35678887755 77766433
No 72
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.16 E-value=4.1e-06 Score=58.43 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=33.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
.|+||+.+.|+.|++|+++|+++|++|+++++-..+
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p 36 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEP 36 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCC
Confidence 488999999999999999999999999999987654
No 73
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.15 E-value=1.2e-05 Score=54.06 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=54.1
Q ss_pred CEEEEEc--------CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccH
Q 032368 48 AVLVLGR--------PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLD 119 (142)
Q Consensus 48 ~Vvvy~~--------~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~d 119 (142)
.+.+|.+ ..||||++++-.|.+.|++|+.+++|..... +.+.++ +-...+|.+..+|..+...+
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p---~~~~~~-----nP~g~vPvL~~~~~~i~eS~ 76 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP---EDLKDL-----APGTQPPFLLYNGEVKTDNN 76 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCC---HHHHHh-----CCCCCCCEEEECCEEecCHH
Confidence 4556655 4699999999999999999999999876543 234444 45678999999998888877
Q ss_pred HHHhhh
Q 032368 120 RVMATH 125 (142)
Q Consensus 120 el~~~~ 125 (142)
.+.+..
T Consensus 77 ~I~eYL 82 (91)
T cd03061 77 KIEEFL 82 (91)
T ss_pred HHHHHH
Confidence 776653
No 74
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.14 E-value=6.7e-06 Score=53.04 Aligned_cols=54 Identities=24% Similarity=0.594 Sum_probs=36.4
Q ss_pred CEEEEEcCCCchHHHHHHH----HHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEE
Q 032368 48 AVLVLGRPGCCMCHVVKTL----LLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKL 114 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~l----L~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~ 114 (142)
+|.+ ..++||+|.++.++ +.+++++++++++ .+. +++.+ +|..++|.++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~---~~~~~------ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDF---EEIEK------YGVMSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTH---HHHHH------TT-SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCH---HHHHH------cCCCCCCEEEECCEE
Confidence 4677 45679999977665 4556766665554 332 23443 589999999999985
No 75
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.12 E-value=2.1e-05 Score=53.36 Aligned_cols=65 Identities=15% Similarity=0.176 Sum_probs=40.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCC---CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE--ECCEEee
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGV---NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF--VGGKLFG 116 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi---~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf--I~G~~IG 116 (142)
..-|+-|+.+||+.|+.....|+++.- ...++.||.+++.... ++.+. .+...+|+++ -+|+.++
T Consensus 16 k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~-~l~~~-----~~V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 16 RLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTM-ELCRR-----EKIIEVPHFLFYKDGEKIH 85 (103)
T ss_pred CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHH-HHHHH-----cCCCcCCEEEEEeCCeEEE
Confidence 345788899999999998888776422 2356667766553222 23222 3666777654 4887653
No 76
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.11 E-value=1.2e-05 Score=52.37 Aligned_cols=65 Identities=20% Similarity=0.221 Sum_probs=49.0
Q ss_pred CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC-CEEeeccHHHHhhh
Q 032368 55 PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG-GKLFGGLDRVMATH 125 (142)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~-G~~IGG~del~~~~ 125 (142)
++||+|.+++-+|...+++|+.+.++.........++ .+ +....+|.+..+ |..+.+...+.+..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~-----~p~~~vP~L~~~~~~~l~eS~aI~~yL 79 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TS-----GGFYTVPVIVDGSGEVIGDSFAIAEYL 79 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cC-----CCCceeCeEEECCCCEEeCHHHHHHHH
Confidence 5799999999999999999998888754332222334 33 567899999888 88888777766653
No 77
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.10 E-value=1.8e-05 Score=52.27 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=41.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCC----CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE--ECCEEee
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHG----VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF--VGGKLFG 116 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~g----i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf--I~G~~IG 116 (142)
.-++.|+.+||+.|+.....|.+.. -.+.+..+|.+.+.++.+.+ +..++|+++ -+|+.+.
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~---------~i~~~Pt~~~~~~g~~~~ 80 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQF---------GVQALPTVYLFAAGQPVD 80 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHc---------CCCCCCEEEEEeCCEEee
Confidence 3478888999999999988876643 23556778887765443333 556777765 4776653
No 78
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.09 E-value=2e-05 Score=52.62 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=43.4
Q ss_pred HHHHhcCCCEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE--CC
Q 032368 40 VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHG-----VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV--GG 112 (142)
Q Consensus 40 v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~g-----i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI--~G 112 (142)
++++++...++.|+.+||+.|++....|+++. ..+.+..+|.+.+..+.+. .+..++|++++ +|
T Consensus 11 f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~---------~~i~~~Pt~~~~~~g 81 (101)
T cd02994 11 WTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGR---------FFVTALPTIYHAKDG 81 (101)
T ss_pred HHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHH---------cCCcccCEEEEeCCC
Confidence 34455666899999999999999988877653 2345566666655433222 35677888765 55
Q ss_pred E
Q 032368 113 K 113 (142)
Q Consensus 113 ~ 113 (142)
+
T Consensus 82 ~ 82 (101)
T cd02994 82 V 82 (101)
T ss_pred C
Confidence 4
No 79
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.09 E-value=2.1e-05 Score=49.67 Aligned_cols=66 Identities=14% Similarity=0.140 Sum_probs=49.8
Q ss_pred EEEEcCCCchHHHHHHHHHh--CCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE-CCEEeeccHHHHh
Q 032368 50 LVLGRPGCCMCHVVKTLLLG--HGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV-GGKLFGGLDRVMA 123 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~--~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI-~G~~IGG~del~~ 123 (142)
.+|+.+.||+|.+++-+|.. .+++|+.+.++..... .++.++ +...++|.+.. ||..+.....+.+
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~---~~~~~~-----~p~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDD---ESLLAV-----NPLGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCC---hHHHHh-----CCCCCCCEEEECCCCEEECHHHHHh
Confidence 68999999999999999999 8999999888754322 233333 46778999985 6777766665544
No 80
>PHA02278 thioredoxin-like protein
Probab=98.07 E-value=3.3e-05 Score=52.87 Aligned_cols=64 Identities=13% Similarity=0.375 Sum_probs=36.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCC----CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEee
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHG----VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLFG 116 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~g----i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~IG 116 (142)
-|+-|+.+||+.|+.+...|++.. ....++.+|.+.+..-..++.+. .+..++|++ |-||+.++
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~-----~~I~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKL-----FDIMSTPVLIGYKDGQLVK 86 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHH-----CCCccccEEEEEECCEEEE
Confidence 477788899999999998887652 22234445544321001122221 345566655 55888653
No 81
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.06 E-value=4.1e-05 Score=50.53 Aligned_cols=78 Identities=18% Similarity=0.298 Sum_probs=50.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEeeccHH
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGH----GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLFGGLDR 120 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~IGG~de 120 (142)
.-|+.|+.+||+.|+..+..|.+. +-++.+..+|.+.+..+.+.+ +...+|++ |-+|+.+..+.-
T Consensus 19 ~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---------~v~~~Pt~~~~~~g~~~~~~~g 89 (103)
T PF00085_consen 19 PVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKY---------GVKSVPTIIFFKNGKEVKRYNG 89 (103)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHT---------TCSSSSEEEEEETTEEEEEEES
T ss_pred CEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhcc---------CCCCCCEEEEEECCcEEEEEEC
Confidence 358888899999999998887664 336778888888775444433 45566666 557877653332
Q ss_pred HHhhhhcCChHHHHHh
Q 032368 121 VMATHISGDLVPILKE 136 (142)
Q Consensus 121 l~~~~~~g~L~~~L~~ 136 (142)
. .....|.++|++
T Consensus 90 ~---~~~~~l~~~i~~ 102 (103)
T PF00085_consen 90 P---RNAESLIEFIEK 102 (103)
T ss_dssp S---SSHHHHHHHHHH
T ss_pred C---CCHHHHHHHHHc
Confidence 1 122345555554
No 82
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.06 E-value=2.8e-05 Score=53.85 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=42.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC---cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEeecc
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN---PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLFGGL 118 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~IGG~ 118 (142)
-|+.|+.+||+.|+.+...|+++.-+ ..++.||.+...++.+.+ +..++|++ |-+|+.++-.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~---------~v~~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKL---------NIKVLPTVILFKNGKTVDRI 91 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHC---------CCccCCEEEEEECCEEEEEE
Confidence 46778889999999999888775322 467788887765444433 44555655 6699876544
No 83
>PTZ00051 thioredoxin; Provisional
Probab=98.05 E-value=3.5e-05 Score=51.03 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=45.5
Q ss_pred HHHHHHhcCCC--EEEEEcCCCchHHHHHHHHHhCCC---CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EE
Q 032368 38 KSVEKMLVENA--VLVLGRPGCCMCHVVKTLLLGHGV---NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FV 110 (142)
Q Consensus 38 ~~v~~~~~~~~--Vvvy~~~~Cp~C~~ak~lL~~~gi---~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI 110 (142)
+.++++++.++ ++.|+.+||+.|+.....|.+..- ...++.+|.+....+.+.+ +..++|++ |-
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~---------~v~~~Pt~~~~~ 79 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKE---------NITSMPTFKVFK 79 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHC---------CCceeeEEEEEe
Confidence 44555555543 678899999999999888876422 2456677766554333332 55667765 44
Q ss_pred CCEEeecc
Q 032368 111 GGKLFGGL 118 (142)
Q Consensus 111 ~G~~IGG~ 118 (142)
+|+.++.+
T Consensus 80 ~g~~~~~~ 87 (98)
T PTZ00051 80 NGSVVDTL 87 (98)
T ss_pred CCeEEEEE
Confidence 77665443
No 84
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.6e-05 Score=57.92 Aligned_cols=73 Identities=14% Similarity=0.270 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcC--CCEEEEEcCCCchHHHHHHHHHhCCCC----cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeE
Q 032368 34 DTAAKSVEKMLVE--NAVLVLGRPGCCMCHVVKTLLLGHGVN----PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPA 107 (142)
Q Consensus 34 ~~~~~~v~~~~~~--~~Vvvy~~~~Cp~C~~ak~lL~~~gi~----~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~ 107 (142)
.+..++-...++. .-+|.|+.+||..|+.+...|+++--+ +....||.+++.++.+. ++...+|+
T Consensus 48 ~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~---------Y~I~avPt 118 (150)
T KOG0910|consen 48 QSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAED---------YEISAVPT 118 (150)
T ss_pred cCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhh---------cceeeeeE
Confidence 3445555555543 358889999999999999988887544 45667777766543332 57788888
Q ss_pred E--EECCEEe
Q 032368 108 V--FVGGKLF 115 (142)
Q Consensus 108 v--fI~G~~I 115 (142)
+ |-||+.+
T Consensus 119 vlvfknGe~~ 128 (150)
T KOG0910|consen 119 VLVFKNGEKV 128 (150)
T ss_pred EEEEECCEEe
Confidence 7 5588764
No 85
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.02 E-value=1.8e-05 Score=60.56 Aligned_cols=66 Identities=15% Similarity=0.346 Sum_probs=43.4
Q ss_pred HHHhcCCCEEEEEc---CCCchHHHHHHHHHhCC-----CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE--
Q 032368 41 EKMLVENAVLVLGR---PGCCMCHVVKTLLLGHG-----VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV-- 110 (142)
Q Consensus 41 ~~~~~~~~Vvvy~~---~~Cp~C~~ak~lL~~~g-----i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI-- 110 (142)
+.+.+...|++|+. +|||.|+.+..+|++.. +++.++++|.+.+.++.+. .+..++|++.+
T Consensus 15 ~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~---------~~V~~~Pt~~~f~ 85 (215)
T TIGR02187 15 KELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEK---------YGVERVPTTIILE 85 (215)
T ss_pred HhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHH---------cCCCccCEEEEEe
Confidence 33444557889988 99999999999987763 2334566665555433222 46677787755
Q ss_pred CCEEe
Q 032368 111 GGKLF 115 (142)
Q Consensus 111 ~G~~I 115 (142)
||+.+
T Consensus 86 ~g~~~ 90 (215)
T TIGR02187 86 EGKDG 90 (215)
T ss_pred CCeee
Confidence 65544
No 86
>PRK09381 trxA thioredoxin; Provisional
Probab=98.01 E-value=3.1e-05 Score=52.49 Aligned_cols=64 Identities=13% Similarity=0.191 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh----CCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE--CCEEeecc
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLG----HGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV--GGKLFGGL 118 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~----~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI--~G~~IGG~ 118 (142)
..-++.|+.+|||.|+.+...|++ ++-.+.+..+|.+....+.+ + .+..++|++++ +|+.++.+
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~---~------~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP---K------YGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHH---h------CCCCcCCEEEEEeCCeEEEEe
Confidence 335788899999999999877765 33335566777766543222 2 36778898755 88877544
No 87
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.01 E-value=3.3e-05 Score=61.73 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=53.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
++++|-...||||-+++.+|+-++++|.+++++.... ++++ .+....||.+.++|+-.-...-++.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r----~eIk------~SsykKVPil~~~Geqm~dSsvIIs 155 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR----QEIK------WSSYKKVPILLIRGEQMVDSSVIIS 155 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh----hhcc------ccccccccEEEeccceechhHHHHH
Confidence 8999999999999999999999999999999987643 3443 2577899999999886544444433
No 88
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.7e-05 Score=63.57 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=60.0
Q ss_pred CCccccCCCCCCCccchHHHHHHHHHhcC-CCEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEeeCCCCHHHHHHHh
Q 032368 18 AGNTSSARGGGVTEEADTAAKSVEKMLVE-NAVLVLGRPGCCMCHVVKTLLLGHGV----NPAVFEVADGDEAAVLDELS 92 (142)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~Vvvy~~~~Cp~C~~ak~lL~~~gi----~~~~i~id~~~~~~~~~~L~ 92 (142)
.+.-.+|.|..+|+- ..++.|.+.... .-++.|+.|||+.|+.....|+++-. .|....++.+.+..+...|
T Consensus 17 ~~~~~a~~I~dvT~a--nfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqf- 93 (304)
T COG3118 17 EDAMAAPGIKDVTEA--NFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQF- 93 (304)
T ss_pred CCccccccceechHh--HHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHh-
Confidence 344444445555532 334444444444 55777889999999999999887643 3566666666665544444
Q ss_pred hhhhccCCCceeeeEE--EECCEEeeccH
Q 032368 93 RIDVENGGGIIQFPAV--FVGGKLFGGLD 119 (142)
Q Consensus 93 ~~~~~~~~g~~tvP~v--fI~G~~IGG~d 119 (142)
|..++|+| |++|+.|-||.
T Consensus 94 --------giqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 94 --------GVQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred --------CcCcCCeEEEeeCCcCccccC
Confidence 66778876 78999998885
No 89
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.00 E-value=4.8e-05 Score=49.03 Aligned_cols=70 Identities=11% Similarity=0.000 Sum_probs=51.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC---CEEeeccHHHHhh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG---GKLFGGLDRVMAT 124 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~---G~~IGG~del~~~ 124 (142)
+++|+.+. |+|.+++-+|...|++|+.+.++........+++.++ +....+|.+..+ |..+.....+.+.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~-----~p~~~vP~l~~~~~~g~~l~eS~aI~~y 74 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKI-----NPNGRIPAIVDHNGTPLTVFESGAILLY 74 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHh-----CcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence 57898886 9999999999999999998888753321112344444 566789999887 7777766665554
No 90
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.99 E-value=7.7e-05 Score=47.39 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=53.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
++++|..+.|+.|.+++-+|...|++|+.+.++... ..+++..+ +...++|.+..||..+.....+...
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~---~~~~~~~~-----~p~~~vP~l~~~~~~l~es~aI~~y 69 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEE---WQESLKPK-----MLFGQLPCFKDGDLTLVQSNAILRH 69 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHH---hhhhhhcc-----CCCCCCCEEEECCEEEEcHHHHHHH
Confidence 367899899999999999999999999988887521 12345444 5667899999999888777766554
No 91
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.99 E-value=3.9e-05 Score=50.39 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE--CCEEeec
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGH----GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV--GGKLFGG 117 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI--~G~~IGG 117 (142)
.-++.|+.+||++|+.....|++. +-...++.+|.+.+..+.+ + .+..++|++++ +|+.+..
T Consensus 16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~---~------~~v~~~P~~~~~~~g~~~~~ 83 (101)
T TIGR01068 16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAA---K------YGIRSIPTLLLFKNGKEVDR 83 (101)
T ss_pred cEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHH---H------cCCCcCCEEEEEeCCcEeee
Confidence 457788889999999998777664 3235677777776644322 2 36778998766 7765533
No 92
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.97 E-value=5e-05 Score=48.35 Aligned_cols=71 Identities=10% Similarity=0.009 Sum_probs=52.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+++|+.+.|++|+++.-+|...|++|+.+.++........+++..+ +....+|.+..+|..+-....+.+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~-----~p~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKI-----NPFGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHh-----CcCCCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999998888764321111344444 5678999998888776655555443
No 93
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.96 E-value=7.6e-05 Score=47.46 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=41.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCC---CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE--CCEEeecc
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHG---VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV--GGKLFGGL 118 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~g---i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI--~G~~IGG~ 118 (142)
.-+++|+.+||++|+.+...|++.- -.+.+..+|.+.+..+.+. .+...+|++++ +|+.++.+
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~v~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE---------YGVRSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh---------cCcccccEEEEEECCEEEEEE
Confidence 3488899999999999999988732 1234555555554433332 35667888766 78754433
No 94
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.95 E-value=5.2e-05 Score=52.82 Aligned_cols=66 Identities=24% Similarity=0.207 Sum_probs=45.7
Q ss_pred cCCCEEEEEcCC--CchHHHHHHHHHhCCCCc----EEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEee
Q 032368 45 VENAVLVLGRPG--CCMCHVVKTLLLGHGVNP----AVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLFG 116 (142)
Q Consensus 45 ~~~~Vvvy~~~~--Cp~C~~ak~lL~~~gi~~----~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~IG 116 (142)
....|+.|+.+| ||.|+.+..+|+++.-+| .++.+|.+++.++... .+..++|++ |-+|+.++
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~---------f~V~sIPTli~fkdGk~v~ 97 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAAR---------FGVLRTPALLFFRDGRYVG 97 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHH---------cCCCcCCEEEEEECCEEEE
Confidence 345688888886 999999999998865443 4567777777543333 355666665 56999876
Q ss_pred ccH
Q 032368 117 GLD 119 (142)
Q Consensus 117 G~d 119 (142)
...
T Consensus 98 ~~~ 100 (111)
T cd02965 98 VLA 100 (111)
T ss_pred EEe
Confidence 553
No 95
>PRK10996 thioredoxin 2; Provisional
Probab=97.94 E-value=0.00019 Score=51.41 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=52.1
Q ss_pred HHHHHHhcCC--CEEEEEcCCCchHHHHHHHHHhC----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE--
Q 032368 38 KSVEKMLVEN--AVLVLGRPGCCMCHVVKTLLLGH----GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF-- 109 (142)
Q Consensus 38 ~~v~~~~~~~--~Vvvy~~~~Cp~C~~ak~lL~~~----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf-- 109 (142)
+.++++++.. -++.|+.+||+.|+.....|.+. +-.+.++.+|.+.+.++.+. .+..++|+++
T Consensus 43 ~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~---------~~V~~~Ptlii~ 113 (139)
T PRK10996 43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSAR---------FRIRSIPTIMIF 113 (139)
T ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHh---------cCCCccCEEEEE
Confidence 3444444433 47888999999999987777664 33456777887776544333 3556677664
Q ss_pred ECCEEeeccHHHHhhhhcCChHHHHHh
Q 032368 110 VGGKLFGGLDRVMATHISGDLVPILKE 136 (142)
Q Consensus 110 I~G~~IGG~del~~~~~~g~L~~~L~~ 136 (142)
-+|+.+.-+.- ......|.++|++
T Consensus 114 ~~G~~v~~~~G---~~~~e~l~~~l~~ 137 (139)
T PRK10996 114 KNGQVVDMLNG---AVPKAPFDSWLNE 137 (139)
T ss_pred ECCEEEEEEcC---CCCHHHHHHHHHH
Confidence 48886533221 1123346666654
No 96
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=1.3e-05 Score=54.53 Aligned_cols=85 Identities=16% Similarity=0.161 Sum_probs=64.0
Q ss_pred CCEEEEEcCCCchHH------HHHHHHHhCCCCcEEEEeeCCCCHH------HHHHHhhhhhccCCCceeeeEEEECCEE
Q 032368 47 NAVLVLGRPGCCMCH------VVKTLLLGHGVNPAVFEVADGDEAA------VLDELSRIDVENGGGIIQFPAVFVGGKL 114 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~------~ak~lL~~~gi~~~~i~id~~~~~~------~~~~L~~~~~~~~~g~~tvP~vfI~G~~ 114 (142)
..|.+|+++..+.-. ++..+|+.+.+.++.++|...++.+ +.++.+-. .|.+.-||||-++++
T Consensus 2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~-----~GnplPPqifn~d~Y 76 (108)
T KOG4023|consen 2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPL-----NGNPLPPQIFNGDQY 76 (108)
T ss_pred CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCC-----CCCCCCcccccCccc
Confidence 357788877654433 5678899999999988877665522 22223322 577788999999999
Q ss_pred eeccHHHHhhhhcCChHHHHHh
Q 032368 115 FGGLDRVMATHISGDLVPILKE 136 (142)
Q Consensus 115 IGG~del~~~~~~g~L~~~L~~ 136 (142)
.|+|+.+.++.+++.|.+.|+-
T Consensus 77 ~Gdye~F~ea~E~ntl~eFL~l 98 (108)
T KOG4023|consen 77 CGDYELFFEAVEQNTLQEFLGL 98 (108)
T ss_pred cccHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999998854
No 97
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.92 E-value=8e-05 Score=47.50 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=49.3
Q ss_pred EEEEEcC-------CCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHH
Q 032368 49 VLVLGRP-------GCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRV 121 (142)
Q Consensus 49 Vvvy~~~-------~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del 121 (142)
+++|..+ .||+|.+++.+|...|++|+.++++.. .. +....+|.+..+|+.+.+...+
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~----------~~-----~p~g~vPvl~~~g~~l~eS~~I 66 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA----------KR-----SPKGKLPFIELNGEKIADSELI 66 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc----------cC-----CCCCCCCEEEECCEEEcCHHHH
Confidence 4677776 579999999999999999988776541 22 4567899999999998888776
Q ss_pred Hhhh
Q 032368 122 MATH 125 (142)
Q Consensus 122 ~~~~ 125 (142)
.+..
T Consensus 67 ~~yL 70 (75)
T cd03080 67 IDHL 70 (75)
T ss_pred HHHH
Confidence 6643
No 98
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.92 E-value=6.9e-05 Score=47.20 Aligned_cols=68 Identities=13% Similarity=0.037 Sum_probs=52.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
++|..+.|+.|.+++-+|...|++|+.+.++...... ..+..+ +....+|.+..+|..+.....+.+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~--~~~~~~-----~p~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPE--LDLKPT-----LPFGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhh--hhhccC-----CcCCCCCEEEECCEEEEecHHHHHH
Confidence 6888899999999999999999999988877543211 224443 5678999999998888777665554
No 99
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.90 E-value=2.5e-05 Score=54.90 Aligned_cols=36 Identities=19% Similarity=0.493 Sum_probs=33.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
-|++|..+.|.-|++|+++|+++|++|+++++...+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~ 37 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTP 37 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCC
Confidence 389999999999999999999999999999887765
No 100
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.90 E-value=6e-05 Score=49.70 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=40.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCC----CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEe
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHG----VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLF 115 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~g----i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~I 115 (142)
.-++.|+.+||+.|+++...|++.. ..+.++.+|.+...++... .+..++|++ |.+|+.+
T Consensus 16 ~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~---------~~i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 16 LLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEK---------FEITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHh---------cCCccccEEEEEECCEEE
Confidence 3478899999999999988887643 3456777777665443332 355667754 5577754
No 101
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.88 E-value=6e-05 Score=51.81 Aligned_cols=67 Identities=13% Similarity=0.262 Sum_probs=43.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC---cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEeeccHHHH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN---PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLFGGLDRVM 122 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~IGG~del~ 122 (142)
-|+.|+.+||+.|+.+...|+++.-. ..++.+|.+.. ++.++ .+..++|++ |-+|+.++.+.-..
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~---------~~i~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNY---------LDIKVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHh---------cCCCcCCEEEEEECCEEEEEEecHH
Confidence 36678999999999999888775332 34566776654 33222 355666655 66999876655444
Q ss_pred hh
Q 032368 123 AT 124 (142)
Q Consensus 123 ~~ 124 (142)
.+
T Consensus 97 ~~ 98 (113)
T cd02957 97 EL 98 (113)
T ss_pred Hh
Confidence 43
No 102
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.87 E-value=6e-05 Score=43.80 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=38.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhC---CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCE
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGH---GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGK 113 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~---gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~ 113 (142)
+++|..++|++|.+++..+.+. .-.+.+..++.+......+.... .+..++|++++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKR------YGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHh------CCCccccEEEEEeC
Confidence 4789999999999999999942 33344444444444322222222 46678999988763
No 103
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.85 E-value=6e-05 Score=57.21 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=52.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE-ECCEEeeccHHHHhhhh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF-VGGKLFGGLDRVMATHI 126 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf-I~G~~IGG~del~~~~~ 126 (142)
++|....||+|.+++-+|..+|++|+.++++..+.. ..+ ++ ++..++|++. .||..+.+...+.+...
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~---~~~-~~-----np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE---TPI-RM-----IGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch---hHH-Hh-----cCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 368889999999999999999999998776554332 122 23 4567999997 78889999888777544
No 104
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.85 E-value=4.3e-05 Score=53.15 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=39.5
Q ss_pred HHHHHHhcCC---CEEEEEcCCCchHHHHHHHHH-------hCCCCcEEEEeeCCCCHHH---------HHHHhhhhhcc
Q 032368 38 KSVEKMLVEN---AVLVLGRPGCCMCHVVKTLLL-------GHGVNPAVFEVADGDEAAV---------LDELSRIDVEN 98 (142)
Q Consensus 38 ~~v~~~~~~~---~Vvvy~~~~Cp~C~~ak~lL~-------~~gi~~~~i~id~~~~~~~---------~~~L~~~~~~~ 98 (142)
+.++++...+ -++.|+.+||++|++....+. .+.-.+.++.+|.+.+... ...+...
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~---- 79 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK---- 79 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH----
Confidence 3445555444 478888999999999876542 1222355556665543100 1233332
Q ss_pred CCCceeeeEE-EEC
Q 032368 99 GGGIIQFPAV-FVG 111 (142)
Q Consensus 99 ~~g~~tvP~v-fI~ 111 (142)
.+..++|++ |++
T Consensus 80 -~~v~~~Pt~~~~~ 92 (125)
T cd02951 80 -YRVRFTPTVIFLD 92 (125)
T ss_pred -cCCccccEEEEEc
Confidence 467889985 444
No 105
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.84 E-value=8.7e-05 Score=50.96 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=38.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE--ECCEEee
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHG-----VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF--VGGKLFG 116 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~g-----i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf--I~G~~IG 116 (142)
-++.|+.+||+.|+.....+.+.. ....+..+|.+.+..+.++ .+..++|+++ .+|+.++
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~---------~~V~~~Pt~~i~~~g~~~~ 93 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARK---------LGAHSVPAIVGIINGQVTF 93 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHH---------cCCccCCEEEEEECCEEEE
Confidence 577899999999998876665432 2345566666655433222 3567777664 6887653
No 106
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.82 E-value=0.00013 Score=47.31 Aligned_cols=63 Identities=13% Similarity=0.252 Sum_probs=41.3
Q ss_pred HHHHHhcC--CCEEEEEcCCCchHHHHHHHHHh----C--CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 39 SVEKMLVE--NAVLVLGRPGCCMCHVVKTLLLG----H--GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 39 ~v~~~~~~--~~Vvvy~~~~Cp~C~~ak~lL~~----~--gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
.+.+.+.. .-+++|+.+||++|+.+...+.+ + +-.+.+..+|.+.+..+.+. .+...+|++++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~~i~~~Pt~~~ 77 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSE---------YGVRGYPTIKL 77 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHh---------CCCCCCCEEEE
Confidence 44444444 36888999999999998887765 3 23456677776654433222 36678897744
No 107
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=4.7e-05 Score=49.40 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=48.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC--H------HHHHHHhhhhhccCCCceeeeEEEEC-CEEeeccHH
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE--A------AVLDELSRIDVENGGGIIQFPAVFVG-GKLFGGLDR 120 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~--~------~~~~~L~~~~~~~~~g~~tvP~vfI~-G~~IGG~de 120 (142)
++|+...||.|..++..|++++++|++++|-.+.. . +.+.++.+. +..|...+|.+.++ |+.|-| +|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~v---k~~gyiGIPall~~d~~vVl~-~D 80 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEV---KSNGYIGIPALLTDDGKVVLG-DD 80 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhh---hhcCcccceEEEeCCCcEEEe-ch
Confidence 88999999999999999999999999999866532 0 111122222 13577889999885 455544 44
Q ss_pred HH
Q 032368 121 VM 122 (142)
Q Consensus 121 l~ 122 (142)
+.
T Consensus 81 l~ 82 (85)
T COG4545 81 LS 82 (85)
T ss_pred hh
Confidence 43
No 108
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.81 E-value=0.00011 Score=53.76 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=42.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeE--EEECCEEeecc
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGV-----NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPA--VFVGGKLFGGL 118 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi-----~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~--vfI~G~~IGG~ 118 (142)
-|+.|+.+|||.|+.....|++..- .+.+..||.+.+.++.+.+.-. .-.+..++|+ +|.+|+.++..
T Consensus 50 vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~---~~~~v~~~PT~ilf~~Gk~v~r~ 124 (152)
T cd02962 50 WLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVS---TSPLSKQLPTIILFQGGKEVARR 124 (152)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCce---ecCCcCCCCEEEEEECCEEEEEE
Confidence 3889999999999999888766432 3566777877765544444210 0001122565 47789876433
No 109
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.81 E-value=4.7e-05 Score=51.51 Aligned_cols=56 Identities=11% Similarity=0.277 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCC---cEEEEeeCC-CCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVN---PAVFEVADG-DEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~-~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
..-++.|+.+||+.|+.....|+++.-. ..++.+|.+ ....+.+ + .+..++|++++
T Consensus 19 ~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~---~------~~V~~~PT~~l 78 (100)
T cd02999 19 DYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLS---R------YGVVGFPTILL 78 (100)
T ss_pred CEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHH---h------cCCeecCEEEE
Confidence 3358889999999999998888775332 345667766 3333222 2 46778887653
No 110
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.80 E-value=8.8e-05 Score=49.62 Aligned_cols=58 Identities=19% Similarity=0.337 Sum_probs=39.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC----cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEE
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN----PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKL 114 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~----~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~ 114 (142)
-++.|+.+||+.|+.....+.+..-. +.+..+|.+.+..+.+. .+..++|++ |-+|+.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~---------~~v~~~Pt~~~~~~g~~ 84 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRS---------QGVNSYPSLYVFPSGMN 84 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHH---------cCCCccCEEEEEcCCCC
Confidence 47789999999999998887665322 45567777766443332 356678877 446654
No 111
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.76 E-value=0.00023 Score=50.42 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=45.5
Q ss_pred HHHHHhcCCC-E-EEEEcCCCchHHHHHH-HHHh------CCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE
Q 032368 39 SVEKMLVENA-V-LVLGRPGCCMCHVVKT-LLLG------HGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF 109 (142)
Q Consensus 39 ~v~~~~~~~~-V-vvy~~~~Cp~C~~ak~-lL~~------~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf 109 (142)
.++++.+.++ | +.|+.+||++|+...+ .+.. +.-.|..+.+|.+...++.+.+.+... ...+...+|++.
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~-~~~~~~G~Pt~v 85 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQ-AMTGQGGWPLNV 85 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHH-HhcCCCCCCEEE
Confidence 3455555443 4 4477889999998864 3333 344577788887665443332222110 014667788775
Q ss_pred E---CCEEeecc
Q 032368 110 V---GGKLFGGL 118 (142)
Q Consensus 110 I---~G~~IGG~ 118 (142)
+ +|+.+-++
T Consensus 86 fl~~~G~~~~~~ 97 (124)
T cd02955 86 FLTPDLKPFFGG 97 (124)
T ss_pred EECCCCCEEeee
Confidence 5 57877433
No 112
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.76 E-value=0.00012 Score=46.63 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=50.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC-CEEeeccHHHHh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG-GKLFGGLDRVMA 123 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~-G~~IGG~del~~ 123 (142)
++|+.+.||+|.+++-+|...|++|+.+.++...+ ...+++..+ +...++|.+..+ |..+-....+.+
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~-----nP~~~vP~L~~~~g~~l~es~aI~~ 70 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKK-----FPLGKVPAFEGADGFCLFESNAIAY 70 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHh-----CCCCCCCEEEcCCCCEEeeHHHHHH
Confidence 47889999999999999999999999988887532 111345554 567899999985 766655554444
No 113
>PRK10387 glutaredoxin 2; Provisional
Probab=97.75 E-value=0.00013 Score=54.68 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=52.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE-EECCEEeeccHHHHhhhh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV-FVGGKLFGGLDRVMATHI 126 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v-fI~G~~IGG~del~~~~~ 126 (142)
+++|+.+.||+|.+++-+|+..|++|+.++++..+.. ..+ +. ++..+||++ .-||..+.....+.....
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~---~~~-~~-----~p~~~VPvL~~~~g~~l~eS~aI~~yL~ 70 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA---TPI-RM-----IGQKQVPILQKDDGSYMPESLDIVHYID 70 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh---hHH-Hh-----cCCcccceEEecCCeEecCHHHHHHHHH
Confidence 4689999999999999999999999998887654322 122 22 456799999 467888888877666543
No 114
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.75 E-value=0.0002 Score=45.17 Aligned_cols=69 Identities=13% Similarity=0.054 Sum_probs=51.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
.+|+.+.+|+|.+++-+|.+.|++|+.++++........+++.++ +....+|.+..+|..+.....+.+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~-----nP~~~vP~L~~~~~~l~eS~aI~~ 70 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAM-----NPNGRVPVLEDGDFVLWESNAILR 70 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhh-----CCCCCCCEEEECCEEEECHHHHHH
Confidence 689999999999999999999999998888753321112344444 567799999988887765554443
No 115
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.74 E-value=0.00012 Score=54.57 Aligned_cols=81 Identities=23% Similarity=0.348 Sum_probs=49.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC---cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEee---ccH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN---PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLFG---GLD 119 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~IG---G~d 119 (142)
-|+-|+.+||+.|+.+...|.++.-+ ..++.||.+.. .+... .+..++|++ |-+|+.++ |++
T Consensus 86 VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~---------f~v~~vPTlllyk~G~~v~~~vG~~ 155 (175)
T cd02987 86 VVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDE---------FDTDALPALLVYKGGELIGNFVRVT 155 (175)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHh---------CCCCCCCEEEEEECCEEEEEEechH
Confidence 46668889999999998888765433 45667777643 22222 355667754 66998774 444
Q ss_pred HHH-hhhhcCChHHHHHhcC
Q 032368 120 RVM-ATHISGDLVPILKEAG 138 (142)
Q Consensus 120 el~-~~~~~g~L~~~L~~~g 138 (142)
++. .-.....|+.+|.+.|
T Consensus 156 ~~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 156 EDLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred HhcCCCCCHHHHHHHHHhcC
Confidence 422 2233445677776654
No 116
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.72 E-value=0.00025 Score=47.82 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHHHHhcCC--CEEEEEcCCCchHHHHHHHHHhC----CCC-cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeE--E
Q 032368 38 KSVEKMLVEN--AVLVLGRPGCCMCHVVKTLLLGH----GVN-PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPA--V 108 (142)
Q Consensus 38 ~~v~~~~~~~--~Vvvy~~~~Cp~C~~ak~lL~~~----gi~-~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~--v 108 (142)
+.++++++.+ -|+.|+.+||+.|+.....|.+. +-. ..+..+|.+ +.+. .++ .+..++|+ +
T Consensus 8 ~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~---~~~------~~v~~~Pt~~~ 77 (102)
T cd02948 8 EEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDT---LKR------YRGKCEPTFLF 77 (102)
T ss_pred HHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHH---HHH------cCCCcCcEEEE
Confidence 3344444433 36789999999999988777654 212 345566665 3322 222 35566775 4
Q ss_pred EECCEEe
Q 032368 109 FVGGKLF 115 (142)
Q Consensus 109 fI~G~~I 115 (142)
|-+|+.+
T Consensus 78 ~~~g~~~ 84 (102)
T cd02948 78 YKNGELV 84 (102)
T ss_pred EECCEEE
Confidence 5578753
No 117
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=9.7e-05 Score=50.96 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=39.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCc---EEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEe
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNP---AVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLF 115 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~---~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~I 115 (142)
|+-|+.+||+.|+.+..++.++..+| .++.+|.++..+ -.++ .+...+|++ +.+|+-+
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~---~~~~------~~V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEE---VAKE------FNVKAMPTFVFYKGGEEV 87 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHh---HHHh------cCceEeeEEEEEECCEEE
Confidence 45588899999999999999987665 466667766322 2232 356677776 4466543
No 118
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.71 E-value=6.3e-05 Score=50.71 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCC-CEEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeE
Q 032368 36 AAKSVEKMLVEN-AVLVLGRPGCCMCHVVKTLLLGH-------GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPA 107 (142)
Q Consensus 36 ~~~~v~~~~~~~-~Vvvy~~~~Cp~C~~ak~lL~~~-------gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~ 107 (142)
.++.++++.+.. -++.|+.+|||.|++....|+++ +..+.+..+|......+.+. .+..++|+
T Consensus 5 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~---------~~I~~~Pt 75 (104)
T cd03000 5 LDDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASE---------FGVRGYPT 75 (104)
T ss_pred chhhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhh---------cCCccccE
Confidence 344555544433 47778889999999887666553 23344555665544432222 36677888
Q ss_pred EEE
Q 032368 108 VFV 110 (142)
Q Consensus 108 vfI 110 (142)
+++
T Consensus 76 ~~l 78 (104)
T cd03000 76 IKL 78 (104)
T ss_pred EEE
Confidence 743
No 119
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.71 E-value=0.00014 Score=49.35 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=38.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC----------CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE--ECCE
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGV----------NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF--VGGK 113 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi----------~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf--I~G~ 113 (142)
-++.|+.+||++|++....+++..- ...+..+|.+.+.++.++ .+..++|+++ -+|+
T Consensus 21 vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~---------~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 21 VLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADR---------YRINKYPTLKLFRNGM 89 (108)
T ss_pred EEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHh---------CCCCcCCEEEEEeCCc
Confidence 4778999999999999888864311 245567777766443222 3677888774 4665
No 120
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.70 E-value=6.3e-05 Score=47.57 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=46.8
Q ss_pred CCchHHHHHHHHHhCCCCcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEEE-CCEEeeccHHHHhhhh
Q 032368 56 GCCMCHVVKTLLLGHGVNPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVFV-GGKLFGGLDRVMATHI 126 (142)
Q Consensus 56 ~Cp~C~~ak~lL~~~gi~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vfI-~G~~IGG~del~~~~~ 126 (142)
.||||+++.-+|..+|++|+...++...+ .....++.++ ++..+||.+.. +|+.+.....+.+..+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~-----~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLAL-----NPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHH-----STT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhcc-----CcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 59999999999999999998777743221 1001335555 67789999998 8999888887776543
No 121
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.69 E-value=0.00025 Score=53.64 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=53.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
.+++|+.+.||+|.+++-+|.+.|++|+.+.+|..... +++..+ +....||++..||..+-...-+.+
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~---~~~~~~-----nP~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLP---QDLIDL-----NPYQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCC---HHHHHh-----CCCCCCCEEEECCEEeeCHHHHHH
Confidence 48899999999999999999999999999988864322 344444 456799999999887766655544
No 122
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.67 E-value=0.0001 Score=52.39 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=32.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
.|++|..+.|.-|++++++|++.|++|+++++-..+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 478999999999999999999999999999986654
No 123
>PRK10026 arsenate reductase; Provisional
Probab=97.67 E-value=0.00011 Score=53.23 Aligned_cols=37 Identities=11% Similarity=0.363 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
..|+||+.+.|.-|++|+++|++++++|+++++-.++
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~p 38 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETP 38 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCC
Confidence 4689999999999999999999999999999987765
No 124
>PRK10853 putative reductase; Provisional
Probab=97.66 E-value=8.9e-05 Score=52.05 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=32.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
|+||+.+.|.-|++|+++|+++|++|+++++-..+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence 78999999999999999999999999999987654
No 125
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.66 E-value=8.7e-05 Score=51.64 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=32.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
|++|+.+.|.-|++|+.+|++.+++|+++++...+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNP 35 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCC
Confidence 57999999999999999999999999999987655
No 126
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.64 E-value=0.00019 Score=48.06 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=36.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECC
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGV----NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGG 112 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi----~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G 112 (142)
-++.|+.+||+.|+++...+++..- ...+..+|.+.+.++.+. .+..++|++ |-+|
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~---------~~i~~~Pt~~~~~~g 83 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQ---------ANIRAYPTIRLYPGN 83 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHH---------cCCCcccEEEEEcCC
Confidence 5778999999999998777765432 245667777665443322 356677766 4465
No 127
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.62 E-value=0.00049 Score=45.61 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=36.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCC----CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHG----VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~g----i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
-++.|+.+||+.|+..+..|.+.. -.+.+..+|.+.+.++.+. .+..++|++++
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---------~~i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQ---------YGVRGFPTIKV 78 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHH---------CCCCccCEEEE
Confidence 477888999999999987776642 2356677777665443332 35677887643
No 128
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.62 E-value=0.00014 Score=48.90 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=35.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCC----CCcEEEEeeCCC--CHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHG----VNPAVFEVADGD--EAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~g----i~~~~i~id~~~--~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
-++.|+.+||++|++....|.+.. -...+..+|.+. +.++.++ .+..++|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~---------~~i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGK---------YGVQGFPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHH---------cCCCcCCEEEE
Confidence 588899999999999877776642 223455555554 3333222 35677887754
No 129
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.62 E-value=0.00031 Score=48.98 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCC--EEEEEcCCCchHHHHHHHHHhC------CCCcEEEEeeCCCC
Q 032368 36 AAKSVEKMLVENA--VLVLGRPGCCMCHVVKTLLLGH------GVNPAVFEVADGDE 84 (142)
Q Consensus 36 ~~~~v~~~~~~~~--Vvvy~~~~Cp~C~~ak~lL~~~------gi~~~~i~id~~~~ 84 (142)
.++.++.+...++ ++.|+.+||++|+.....+.+. ...|..+++|.+.+
T Consensus 8 ~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~ 64 (117)
T cd02959 8 LEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE 64 (117)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC
Confidence 4566666665443 6668899999999998887763 33455566665543
No 130
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.61 E-value=0.00011 Score=50.93 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=32.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
|++|+.+.|.-|++|+++|++.+++|+++++-..+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence 57999999999999999999999999999986654
No 131
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.60 E-value=0.00031 Score=49.14 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=41.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC----cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEe
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN----PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLF 115 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~----~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I 115 (142)
-|+-|+.+|||.|+.+-.+|.++.-+ ..++.+|.++..++.+.+.- ...+++ .+|-+|+|+
T Consensus 17 VVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I------~amPtf-vffkngkh~ 81 (114)
T cd02986 17 LVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI------SYIPST-IFFFNGQHM 81 (114)
T ss_pred EEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc------eeCcEE-EEEECCcEE
Confidence 46679999999999999999887643 34667777766554444321 223444 367789986
No 132
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.58 E-value=6.7e-05 Score=53.47 Aligned_cols=80 Identities=13% Similarity=0.231 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHh----C-CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceee
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLG----H-GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQF 105 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~----~-gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tv 105 (142)
.++.+..+.++.....-.|++++.+|||+|.+...+|.+ . +++.+++..|.. . +.+.+.+ ..|..++
T Consensus 27 ~l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~--~---el~~~~l---t~g~~~I 98 (129)
T PF14595_consen 27 QLSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDEN--K---ELMDQYL---TNGGRSI 98 (129)
T ss_dssp H--HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHH--H---HHTTTTT---T-SS--S
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCC--h---hHHHHHH---hCCCeec
Confidence 456677788888888889999999999999987666544 3 455554443332 2 2233332 2577899
Q ss_pred eEEEE---CCEEeecc
Q 032368 106 PAVFV---GGKLFGGL 118 (142)
Q Consensus 106 P~vfI---~G~~IGG~ 118 (142)
|.+++ +|+.+|-+
T Consensus 99 P~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 99 PTFIFLDKDGKELGRW 114 (129)
T ss_dssp SEEEEE-TT--EEEEE
T ss_pred CEEEEEcCCCCEeEEE
Confidence 99866 34555443
No 133
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.58 E-value=0.00013 Score=48.15 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCC----C--CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHG----V--NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~g----i--~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
.-++.|+.+||+.|+.....|.+.. - .+.+..+|.+.+..+.+. .+...+|.+++
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~i~~~P~~~~ 75 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASR---------FGVSGFPTIKF 75 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHh---------CCCCcCCEEEE
Confidence 3489999999999998877665532 1 245666676655443322 36678898844
No 134
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.57 E-value=0.00042 Score=44.03 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=49.4
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC-CEEeeccHHHHhh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG-GKLFGGLDRVMAT 124 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~-G~~IGG~del~~~ 124 (142)
.+|+.+.| .|.+++-+|...|++|+.+.++........+++.++ +....+|.+..+ |..+.....+.+.
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~-----np~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAI-----NPKGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHh-----CCCCCCCEEEECCCcEEEcHHHHHHH
Confidence 57888876 488999999999999998888875421112445554 567899999887 7766666655544
No 135
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.57 E-value=0.00023 Score=47.13 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=37.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhC----C--CCcEEEEeeCCC-CHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGH----G--VNPAVFEVADGD-EAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~----g--i~~~~i~id~~~-~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
-++.|+.+||+.|++....+.+. . -.+.+..+|.+. ...+.+.+ +..++|.+++
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~---------~i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKY---------GVSGFPTLKF 81 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhC---------CCCCcCEEEE
Confidence 48889999999999887777553 2 235677788777 54433333 5667888755
No 136
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.55 E-value=0.00031 Score=48.87 Aligned_cols=59 Identities=5% Similarity=0.013 Sum_probs=38.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC----cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEE
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN----PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKL 114 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~----~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~ 114 (142)
-++.|+.+||++|+.++..|++..-. ..+..||.+.+..+.. ++ .+..++|++ |.+|+.
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~--~~------~~I~~~PTl~lf~~g~~ 96 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCR--KQ------KHFFYFPVIHLYYRSRG 96 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHH--Hh------cCCcccCEEEEEECCcc
Confidence 58889999999999998888776432 3456777766543221 11 244555654 667663
No 137
>PRK15113 glutathione S-transferase; Provisional
Probab=97.51 E-value=0.00062 Score=51.59 Aligned_cols=72 Identities=7% Similarity=-0.063 Sum_probs=53.1
Q ss_pred CCEEEEEcC--CCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 47 NAVLVLGRP--GCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 47 ~~Vvvy~~~--~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
..+++|+.+ .||+|.++.-+|.+.|++|+.+.++........+++.++ +....||++..||..|-...-+.+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~-----nP~g~VP~L~~~~~~l~ES~aI~~ 77 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGY-----SLTRRVPTLQHDDFELSESSAIAE 77 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhc-----CCCCCCCEEEECCEEEecHHHHHH
Confidence 457899975 699999999999999999999988865321111345444 567899999999876655544444
No 138
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.48 E-value=0.00054 Score=45.33 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=38.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC----CC---CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE--ECCEEe
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGH----GV---NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF--VGGKLF 115 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~----gi---~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf--I~G~~I 115 (142)
.-++.|+.+||+.|+.....|.+. .- .+.+..+|.+.+..+.+. .+..++|+++ -+|+.+
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~---------~~v~~~Pt~~~~~~g~~~ 86 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSE---------FQVRGYPTLLLFKDGEKV 86 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhh---------cCCCcCCEEEEEeCCCee
Confidence 367888999999999887766543 22 356677777665433222 3556778754 466544
No 139
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.48 E-value=0.00069 Score=42.65 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=50.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
.+|+.+. +.|.+++-+|...|++|+.+.++.........++.++ +....+|.+..+|..+.....+.+..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~p~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAI-----NPLGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhc-----CCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 5777765 6799999999999999998888764211111334444 56779999999998887777666653
No 140
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.48 E-value=0.00057 Score=46.54 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEE
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHG-----VNPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVF 109 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~g-----i~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vf 109 (142)
..-++.|+.+|||+|++....|.+.. ..+.+..+|.+.+ ..+. .+. .+...+|+++
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~---~~~-----~~v~~~Pti~ 83 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFA---KEE-----LQLKSFPTIL 83 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhH---Hhh-----cCCCcCCEEE
Confidence 34688899999999999988876642 2345566666552 2221 111 3567788774
No 141
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.46 E-value=0.00027 Score=46.85 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC----C--CCcEEEEeeCCC--CHHHHHHHhhhhhccCCCceeeeEE--EECCEEe
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGH----G--VNPAVFEVADGD--EAAVLDELSRIDVENGGGIIQFPAV--FVGGKLF 115 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~----g--i~~~~i~id~~~--~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~I 115 (142)
.-++.|+.+||++|+.....+.+. . -.+.+..+|.+. +..+... .+..++|++ |-+|+.+
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~---------~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEE---------YNVKGFPTFKYFENGKFV 88 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHh---------CCCccccEEEEEeCCCee
Confidence 347889999999999887655443 2 223455566655 4433222 356677776 4466644
No 142
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.43 E-value=0.00038 Score=50.52 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=32.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC----cEEEEeeCCCCHHHHHHH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN----PAVFEVADGDEAAVLDEL 91 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~----~~~i~id~~~~~~~~~~L 91 (142)
-|+-|+.+||+.|+....+|++..-+ ..++.||.++..++.+++
T Consensus 26 VVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y 73 (142)
T PLN00410 26 VVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY 73 (142)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc
Confidence 46779999999999999998887533 345777777765544443
No 143
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.42 E-value=0.00065 Score=52.33 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=47.8
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHH----hCCCCcEEEEeeCC---------CCHHHHHHHhhhhhccCC
Q 032368 34 DTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLL----GHGVNPAVFEVADG---------DEAAVLDELSRIDVENGG 100 (142)
Q Consensus 34 ~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~----~~gi~~~~i~id~~---------~~~~~~~~L~~~~~~~~~ 100 (142)
..-.+.++++.....+++|+.+.||+|+....+|. ++|++...+++|.. .+... .+. -
T Consensus 109 ~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~---~~~------l 179 (215)
T PF13728_consen 109 QKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQ---AKR------L 179 (215)
T ss_pred HHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHH---HHH------c
Confidence 33456677777888999999999999997766554 46777777777743 12222 222 2
Q ss_pred CceeeeEEEE
Q 032368 101 GIIQFPAVFV 110 (142)
Q Consensus 101 g~~tvP~vfI 110 (142)
|...+|.+|+
T Consensus 180 ~v~~~Pal~L 189 (215)
T PF13728_consen 180 GVKVTPALFL 189 (215)
T ss_pred CCCcCCEEEE
Confidence 6789999987
No 144
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.42 E-value=0.00077 Score=48.45 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=37.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhC----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE---CCEEe
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGH----GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV---GGKLF 115 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI---~G~~I 115 (142)
-|+.|+.+||+.|+.....|.++ +-.+.++.|+.+.+. ..+.+.+ .+...+|++++ +|+.+
T Consensus 23 vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~------~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 23 TLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDR------YRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHH------cCCCCCCEEEEECCCCCEE
Confidence 47788889999999988887654 222345555554331 1122232 46778887754 47654
No 145
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.41 E-value=0.00043 Score=52.46 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=58.6
Q ss_pred CCCCCCCccchHHHHHHHHHhcCC----CEEEEEcCCCchHHHHHHHHHhCCCC---cEEEEeeCCCCHHHHHHHhhhhh
Q 032368 24 ARGGGVTEEADTAAKSVEKMLVEN----AVLVLGRPGCCMCHVVKTLLLGHGVN---PAVFEVADGDEAAVLDELSRIDV 96 (142)
Q Consensus 24 ~~~~~~~~~~~~~~~~v~~~~~~~----~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~~~~~~~~~L~~~~~ 96 (142)
++.|.+...+ ..++++.+.... -|+-|+.+||+.|+.+...|.++..+ ..++.|+.+.. ...
T Consensus 79 ~~~G~v~eis--~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~------~~~--- 147 (192)
T cd02988 79 SKFGEVYEIS--KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC------IPN--- 147 (192)
T ss_pred CCCCeEEEeC--HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh------Hhh---
Confidence 3455554443 345555555332 35668999999999999988876543 35666666432 122
Q ss_pred ccCCCceeeeEE--EECCEEee---ccHHHHh-hhhcCChHHHHHhcC
Q 032368 97 ENGGGIIQFPAV--FVGGKLFG---GLDRVMA-THISGDLVPILKEAG 138 (142)
Q Consensus 97 ~~~~g~~tvP~v--fI~G~~IG---G~del~~-~~~~g~L~~~L~~~g 138 (142)
.+...+|++ |-||+.++ |+.++.. -.....|+.+|.+.|
T Consensus 148 ---~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 148 ---YPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred ---CCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 355666765 56888654 3443321 122345677776654
No 146
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.40 E-value=0.00055 Score=46.26 Aligned_cols=68 Identities=24% Similarity=0.253 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh---C----CCCcEEEEeeCCCCHH----------------HHHHHhhhhhccCCCce
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLG---H----GVNPAVFEVADGDEAA----------------VLDELSRIDVENGGGII 103 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~---~----gi~~~~i~id~~~~~~----------------~~~~L~~~~~~~~~g~~ 103 (142)
..|++|+.+|||+|++....+.+ . .-.+.++.++...+.. ...++.+. .|..
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~v~ 81 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQR-----YGVN 81 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHH-----TT--
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHH-----cCCC
Confidence 45889999999999998766653 1 1135566666654321 11234333 5788
Q ss_pred eeeEEEEC---CE---EeeccH
Q 032368 104 QFPAVFVG---GK---LFGGLD 119 (142)
Q Consensus 104 tvP~vfI~---G~---~IGG~d 119 (142)
.+|++++- |+ .+-|+-
T Consensus 82 gtPt~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 82 GTPTIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp SSSEEEECTTTSCEEEEEESS-
T ss_pred ccCEEEEEcCCCCEEEEecCCC
Confidence 89998663 66 344554
No 147
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.39 E-value=0.0012 Score=51.65 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=50.7
Q ss_pred CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhhh
Q 032368 55 PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHI 126 (142)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~~ 126 (142)
..||+|++++-+|...|++|+++.+|..... +++.++ +....+|++..+|..+.....+.+...
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~---~~fl~i-----nP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKP---EDLQNL-----APGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCC---HHHHHH-----CcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 4699999999999999999999999876532 344444 456789999989988888777766544
No 148
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.35 E-value=0.00077 Score=53.64 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCEEEEEcCCCchHHHHHHHHHh----CCCCcEEEEeeCCCCHHH-----HHHHhhhhhccCCCceeeeEE
Q 032368 38 KSVEKMLVENAVLVLGRPGCCMCHVVKTLLLG----HGVNPAVFEVADGDEAAV-----LDELSRIDVENGGGIIQFPAV 108 (142)
Q Consensus 38 ~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~----~gi~~~~i~id~~~~~~~-----~~~L~~~~~~~~~g~~tvP~v 108 (142)
..++++.....++.|+.+|||+|+.....|.+ +++.+..+++|......+ -..+.+. .|..++|.+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~-----~gV~~vPtl 233 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQ-----LKIRTVPAV 233 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHH-----cCCCcCCeE
Confidence 45555666667888999999999988777655 455444555555321000 0112222 477889998
Q ss_pred EE
Q 032368 109 FV 110 (142)
Q Consensus 109 fI 110 (142)
|+
T Consensus 234 ~L 235 (271)
T TIGR02740 234 FL 235 (271)
T ss_pred EE
Confidence 66
No 149
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.33 E-value=0.0014 Score=46.14 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=24.5
Q ss_pred CEEEEEc-------CCCchHHHHHHHHHh----CCCCcEEEEeeCCC
Q 032368 48 AVLVLGR-------PGCCMCHVVKTLLLG----HGVNPAVFEVADGD 83 (142)
Q Consensus 48 ~Vvvy~~-------~~Cp~C~~ak~lL~~----~gi~~~~i~id~~~ 83 (142)
-|+.|+. +|||.|+.+...|++ +.-.+.++.||.+.
T Consensus 24 vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~ 70 (119)
T cd02952 24 IFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGD 70 (119)
T ss_pred EEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCC
Confidence 4777888 899999988766654 33235566666644
No 150
>PLN02473 glutathione S-transferase
Probab=97.26 E-value=0.0014 Score=49.23 Aligned_cols=72 Identities=18% Similarity=0.028 Sum_probs=53.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
.+.+|+.+.||+|.+++-+|.+.|++|+.+.++.........++..+ +....+|.+..||..|....-+.+.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~-----nP~g~vP~L~~~g~~l~ES~aI~~Y 73 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLR-----QPFGQVPAIEDGDLKLFESRAIARY 73 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhh-----CCCCCCCeEEECCEEEEehHHHHHH
Confidence 36789999999999999999999999998888765321111223233 4567999999999888777665553
No 151
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.21 E-value=0.002 Score=40.87 Aligned_cols=64 Identities=11% Similarity=-0.023 Sum_probs=48.0
Q ss_pred cCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 54 RPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 54 ~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
...||+|++++-+|...|++|+.+.++..... ...++.++ +....+|.+..+|..+.....+.+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~-~~~~~~~~-----nP~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPD-TRARILEF-----SPTGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCcc-ccHHHHhh-----CCCCcCCEEEECCEEEEcHHHHHH
Confidence 35799999999999999999998888764321 12345554 567899999999987776665544
No 152
>PTZ00062 glutaredoxin; Provisional
Probab=97.21 E-value=0.0013 Score=50.41 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=43.3
Q ss_pred HHHHHHHhc--CC-CEEEEEcCCCchHHHHHHHHHhCCCC---cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 37 AKSVEKMLV--EN-AVLVLGRPGCCMCHVVKTLLLGHGVN---PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 37 ~~~v~~~~~--~~-~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
.+.+.+.++ .. .|..|+.+|||.|+.+..+|.++.-+ +.++.||.+ + .+ .+.+++ .+|-
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~-~V-----~~vPtf-v~~~ 70 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------D-AN-----NEYGVF-EFYQ 70 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------c-Cc-----ccceEE-EEEE
Confidence 344555555 23 45556689999999999999887654 466667654 1 11 334444 4566
Q ss_pred CCEEeeccH
Q 032368 111 GGKLFGGLD 119 (142)
Q Consensus 111 ~G~~IGG~d 119 (142)
+|+.|+.++
T Consensus 71 ~g~~i~r~~ 79 (204)
T PTZ00062 71 NSQLINSLE 79 (204)
T ss_pred CCEEEeeee
Confidence 888876543
No 153
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.18 E-value=0.0022 Score=48.31 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=26.4
Q ss_pred CEEEEEcCCCchHHHH----HHHHHhCCCCcEEEEeeCC
Q 032368 48 AVLVLGRPGCCMCHVV----KTLLLGHGVNPAVFEVADG 82 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~a----k~lL~~~gi~~~~i~id~~ 82 (142)
++++|+.+|||+|++. +++-+++++++.-+.+|..
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 3999999999999987 5555666766655666644
No 154
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.18 E-value=0.0018 Score=50.36 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhC
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGH 70 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~ 70 (142)
..|++|+.+.||||+++...+.++
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHH
Confidence 358999999999999998888775
No 155
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.10 E-value=0.0018 Score=44.65 Aligned_cols=57 Identities=18% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCC-------cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVN-------PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~-------~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
.-++.|+.+||+.|+.....+.+..-. ..+..+|.+.+.. ..+.+. .+...+|++++
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~--~~~~~~-----~~i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN--VALCRD-----FGVTGYPTLRY 84 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh--HHHHHh-----CCCCCCCEEEE
Confidence 357778999999999888877664321 3344555432211 122221 36677887755
No 156
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.09 E-value=0.0017 Score=42.06 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCC--EEEEEcCCCchHHHHHHHHHh-------CCCCcEEEEeeCCCCH
Q 032368 35 TAAKSVEKMLVENA--VLVLGRPGCCMCHVVKTLLLG-------HGVNPAVFEVADGDEA 85 (142)
Q Consensus 35 ~~~~~v~~~~~~~~--Vvvy~~~~Cp~C~~ak~lL~~-------~gi~~~~i~id~~~~~ 85 (142)
+..+.+.++.+.++ ++.|+.+||++|+..++.+-+ +.-.|..+.+|.+...
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED 64 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC
Confidence 45556666665443 677888999999998776533 2345788888886543
No 157
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.08 E-value=0.0026 Score=50.40 Aligned_cols=72 Identities=11% Similarity=0.205 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHH----HhCCCCcEEEEeeCCCCHHHH-----HHHhhhhhccCCCcee
Q 032368 34 DTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLL----LGHGVNPAVFEVADGDEAAVL-----DELSRIDVENGGGIIQ 104 (142)
Q Consensus 34 ~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL----~~~gi~~~~i~id~~~~~~~~-----~~L~~~~~~~~~g~~t 104 (142)
.+-.+.++++.+...+++|..+.||+|++.-.+| +++|++...+.+|......+. ..+.+. -|...
T Consensus 139 ~~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~-----l~v~~ 213 (256)
T TIGR02739 139 EQKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQH-----LGVKY 213 (256)
T ss_pred HHHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHh-----cCCcc
Confidence 3446677778888999999999999999775555 567888777888765321100 111111 26678
Q ss_pred eeEEEE
Q 032368 105 FPAVFV 110 (142)
Q Consensus 105 vP~vfI 110 (142)
+|.+|+
T Consensus 214 ~Pal~L 219 (256)
T TIGR02739 214 FPALYL 219 (256)
T ss_pred CceEEE
Confidence 999987
No 158
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0032 Score=49.13 Aligned_cols=72 Identities=15% Similarity=0.013 Sum_probs=57.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
..|.+|+.-.|||.+|++-.|+..||+|+++++|...-. +-|.+. ..-...||++.-||+.|.-.-.+.+..
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks---~~ll~~----np~hkKVPvL~Hn~k~i~ESliiveYi 79 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKS---EWLLEK----NPVHKKVPVLEHNGKPICESLIIVEYI 79 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCC---HHHHHh----ccccccCCEEEECCceehhhHHHHHHH
Confidence 569999999999999999999999999999999886533 233333 124678999999999987766665543
No 159
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.05 E-value=0.00092 Score=45.93 Aligned_cols=32 Identities=19% Similarity=0.460 Sum_probs=25.1
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC
Q 032368 52 LGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 52 y~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
|+.+.|.-|++|+++|++.|++|+++++...+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCC
Confidence 78899999999999999999999999887754
No 160
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.05 E-value=0.0022 Score=42.35 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC------CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGV------NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi------~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
.-++.|+.+||++|+.....|.+..- .+.+..+|.+.+ +.. .. .+..++|++++
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~---~~------~~~~~~Pt~~~ 79 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVP---SE------FVVDGFPTILF 79 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhh---hh------ccCCCCCEEEE
Confidence 34777999999999998887766432 245556666543 211 11 23467787654
No 161
>PLN02378 glutathione S-transferase DHAR1
Probab=96.97 E-value=0.0034 Score=47.61 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=47.0
Q ss_pred CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 55 PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
..||+|+++.-+|++.|++|+.+.+|..... +++.++ +....||.+..||..+....-+...
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~---~~~l~i-----nP~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKP---QWFLDI-----SPQGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCC---HHHHHh-----CCCCCCCEEEECCEEecCHHHHHHH
Confidence 4599999999999999999999888875432 234444 5678999999998877655554443
No 162
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.96 E-value=0.003 Score=49.05 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=40.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEe
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGV----NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLF 115 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi----~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~I 115 (142)
..-++.|+.+||+.|++....+++..- ...+..+|.+.+.++.++ .+..++|++ |-+|+.+
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~---------~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKR---------FAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHH---------cCCCcCCEEEEEECCEEE
Confidence 345888999999999999888766422 234556666655443332 355667765 4578765
No 163
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=96.95 E-value=0.0038 Score=49.45 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCE
Q 032368 34 DTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGK 113 (142)
Q Consensus 34 ~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~ 113 (142)
...+-.++.... ..+. ...||+|+++.-+|.+.|++|+.+.+|..... +++.++ +....+|.+..+|.
T Consensus 54 ~~~~~~~~~~~~-~~~~---~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~---~~fl~i-----NP~GkVPvL~~d~~ 121 (265)
T PLN02817 54 SPLEVCVKASLT-VPNK---LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKP---EWFLKI-----SPEGKVPVVKLDEK 121 (265)
T ss_pred ccHHHHHhcccC-CCCc---CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCC---HHHHhh-----CCCCCCCEEEECCE
Confidence 334555554442 2333 34599999999999999999998888775432 334444 45679999999998
Q ss_pred EeeccHHHHhh
Q 032368 114 LFGGLDRVMAT 124 (142)
Q Consensus 114 ~IGG~del~~~ 124 (142)
.+....-+.+.
T Consensus 122 ~L~ES~aI~~Y 132 (265)
T PLN02817 122 WVADSDVITQA 132 (265)
T ss_pred EEecHHHHHHH
Confidence 77666655543
No 164
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.95 E-value=0.0013 Score=51.79 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCchHHHHHHHH----HhCCCCcEEEEeeCCCCHHHH------HHHhhhhhccCCCceee
Q 032368 36 AAKSVEKMLVENAVLVLGRPGCCMCHVVKTLL----LGHGVNPAVFEVADGDEAAVL------DELSRIDVENGGGIIQF 105 (142)
Q Consensus 36 ~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL----~~~gi~~~~i~id~~~~~~~~------~~L~~~~~~~~~g~~tv 105 (142)
-.+.++++.+...+++|..+.||+|++.-.+| +++|++...+.+|......+. ...++ -|...+
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~------l~v~~~ 207 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQR------LGVKYF 207 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHh------cCCccc
Confidence 45567788888999999999999999765555 556787777777763321110 11122 367889
Q ss_pred eEEEE
Q 032368 106 PAVFV 110 (142)
Q Consensus 106 P~vfI 110 (142)
|.+|+
T Consensus 208 PAl~L 212 (248)
T PRK13703 208 PALML 212 (248)
T ss_pred ceEEE
Confidence 99987
No 165
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.92 E-value=0.0022 Score=41.22 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGH 70 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~ 70 (142)
|.+|+.+.||+|..+...|.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 5789999999999998888774
No 166
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=96.84 E-value=0.003 Score=47.19 Aligned_cols=69 Identities=10% Similarity=0.022 Sum_probs=51.1
Q ss_pred EEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 51 VLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 51 vy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+|+...||+|.+++-+|.+.|++|+...++.... .....++.++ +...++|.+..||..+-....+...
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-----nP~g~vP~L~~~g~~l~ES~aI~~y 71 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLAL-----NPQGLVPTLDIDGEVLTQSLAIIEY 71 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhc-----CCCCcCCEEEECCEEeecHHHHHHH
Confidence 6888899999999999999999999888874211 1111345544 5678999999999887776665553
No 167
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.71 E-value=0.0086 Score=49.63 Aligned_cols=67 Identities=15% Similarity=0.322 Sum_probs=42.5
Q ss_pred HHHHHhcCCC--EEEEEcCCCchHHHHHHHHHh-------CCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE-
Q 032368 39 SVEKMLVENA--VLVLGRPGCCMCHVVKTLLLG-------HGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV- 108 (142)
Q Consensus 39 ~v~~~~~~~~--Vvvy~~~~Cp~C~~ak~lL~~-------~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v- 108 (142)
.+.++++.++ ++.|+.+||++|++....+.+ .+-++.+..+|.+.+.++.+. .+..++|++
T Consensus 10 ~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~---------~~i~~~Pt~~ 80 (462)
T TIGR01130 10 NFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQK---------YGVSGYPTLK 80 (462)
T ss_pred HHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHh---------CCCccccEEE
Confidence 3444454444 788999999999988766543 233356777887776544333 355667766
Q ss_pred -EECCEE
Q 032368 109 -FVGGKL 114 (142)
Q Consensus 109 -fI~G~~ 114 (142)
|-+|+.
T Consensus 81 ~~~~g~~ 87 (462)
T TIGR01130 81 IFRNGED 87 (462)
T ss_pred EEeCCcc
Confidence 445664
No 168
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.70 E-value=0.0098 Score=41.83 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=37.2
Q ss_pred HHHHHHhcCC--CEEEEEcC-CCch--HH--HHH--------HHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCc
Q 032368 38 KSVEKMLVEN--AVLVLGRP-GCCM--CH--VVK--------TLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGI 102 (142)
Q Consensus 38 ~~v~~~~~~~--~Vvvy~~~-~Cp~--C~--~ak--------~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~ 102 (142)
+.+++.+..+ .+++|..+ ||+. |+ ... ..|++.+ +.+..||.+.+.++.++ .|.
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~--v~~~kVD~d~~~~La~~---------~~I 85 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG--IGFGLVDSKKDAKVAKK---------LGL 85 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC--CEEEEEeCCCCHHHHHH---------cCC
Confidence 3444444333 56666555 5654 98 332 3333334 45667777766544333 355
Q ss_pred eeeeEE--EECCEEee
Q 032368 103 IQFPAV--FVGGKLFG 116 (142)
Q Consensus 103 ~tvP~v--fI~G~~IG 116 (142)
.++|++ |.||+.+.
T Consensus 86 ~~iPTl~lfk~G~~v~ 101 (120)
T cd03065 86 DEEDSIYVFKDDEVIE 101 (120)
T ss_pred ccccEEEEEECCEEEE
Confidence 666665 77998764
No 169
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.68 E-value=0.0096 Score=52.02 Aligned_cols=74 Identities=11% Similarity=0.213 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCC--CEEEEEcCCCchHHHHHHH-H------HhCCCCcEEEEeeCCCC-HHHHHHHhhhhhccCCCce
Q 032368 34 DTAAKSVEKMLVEN--AVLVLGRPGCCMCHVVKTL-L------LGHGVNPAVFEVADGDE-AAVLDELSRIDVENGGGII 103 (142)
Q Consensus 34 ~~~~~~v~~~~~~~--~Vvvy~~~~Cp~C~~ak~l-L------~~~gi~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~ 103 (142)
.+.++.+++....+ -++-|+.+||+.|+..+.. + ++++ ++..+.+|.+++ .+..+.+++ .+..
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~------~~v~ 533 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKH------YNVL 533 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHH------cCCC
Confidence 44556666555433 3556889999999987654 2 2222 356666776543 222233333 4677
Q ss_pred eeeEEEE---CCEE
Q 032368 104 QFPAVFV---GGKL 114 (142)
Q Consensus 104 tvP~vfI---~G~~ 114 (142)
.+|++++ ||+.
T Consensus 534 g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 534 GLPTILFFDAQGQE 547 (571)
T ss_pred CCCEEEEECCCCCC
Confidence 7888755 4554
No 170
>PLN02309 5'-adenylylsulfate reductase
Probab=96.59 E-value=0.013 Score=49.96 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=35.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEeeCC-CCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHG-----VNPAVFEVADG-DEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~g-----i~~~~i~id~~-~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
.-++.|+.+||++|+.++..|.++. ..+.+..+|.+ .+..+.. ++ .+..++|++++
T Consensus 367 ~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~--~~------~~I~~~PTil~ 428 (457)
T PLN02309 367 PWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAK--QE------LQLGSFPTILL 428 (457)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHH--hh------CCCceeeEEEE
Confidence 3588999999999999988887653 23456677766 3332221 11 25567777644
No 171
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=96.48 E-value=0.014 Score=42.75 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=28.0
Q ss_pred hcCCCEEEEEcCCCchHHHHHHHHHh----CCCCcEEEEeeCC
Q 032368 44 LVENAVLVLGRPGCCMCHVVKTLLLG----HGVNPAVFEVADG 82 (142)
Q Consensus 44 ~~~~~Vvvy~~~~Cp~C~~ak~lL~~----~gi~~~~i~id~~ 82 (142)
.++..++.|..+|||+|++....|.+ +++.+..+++|..
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 35567999999999999988777764 4555445566543
No 172
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=96.46 E-value=0.0081 Score=41.76 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHH
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLL 68 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~ 68 (142)
..-++.|+.+|||.|++....|.
T Consensus 19 k~vll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 19 KTVGLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred cEEEEEEECCCChHHHHHhHHHH
Confidence 33577778899999997766654
No 173
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.45 E-value=0.0094 Score=50.93 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=25.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEeeCCCC
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN-----PAVFEVADGDE 84 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~-----~~~i~id~~~~ 84 (142)
-++.|+.+||++|+.+...|+++.-. ..+..+|.+.+
T Consensus 374 VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 374 WLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 47789999999999998887665322 33455555443
No 174
>PTZ00102 disulphide isomerase; Provisional
Probab=96.45 E-value=0.017 Score=48.55 Aligned_cols=59 Identities=17% Similarity=0.280 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh-------CCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEE
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLG-------HGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKL 114 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~-------~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~ 114 (142)
.-++.|+.+||++|++....+.+ .+-++.+..+|...+.++.+. .+..++|++ |-+|+.
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~---------~~i~~~Pt~~~~~~g~~ 118 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQE---------FGVRGYPTIKFFNKGNP 118 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHh---------cCCCcccEEEEEECCce
Confidence 35888999999999988765443 233466777887766543333 255667766 445653
No 175
>PLN02395 glutathione S-transferase
Probab=96.40 E-value=0.016 Score=43.45 Aligned_cols=70 Identities=14% Similarity=0.015 Sum_probs=50.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+++|+.+.| .+.+++-+|.+.|++|+.+.++........+++.++ +....||++..+|..+-....+.+.
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~-----nP~g~vP~L~~~~~~l~ES~aI~~Y 72 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLAL-----QPFGVVPVIVDGDYKIFESRAIMRY 72 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhh-----CCCCCCCEEEECCEEEEcHHHHHHH
Confidence 688987775 489999999999999998888764321111344444 5667999999888777766665554
No 176
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.011 Score=44.35 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=51.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCE-EeeccHHHHhh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGK-LFGGLDRVMAT 124 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~-~IGG~del~~~ 124 (142)
++|+.+.+|+|.++.-+|.++|++|+.+.++... .....++..+ +....||++..+|- .+-....+.+.
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~-----nP~gkVPvL~~~~~~~l~ES~AI~~Y 71 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLAL-----NPLGKVPALVDDDGEVLTESGAILEY 71 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhc-----CCCCCCCEEeeCCCCeeecHHHHHHH
Confidence 5788888899999999999999999999998875 1122445444 56789999998874 45555444443
No 177
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.37 E-value=0.0056 Score=40.54 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCC----CcEEEEeeCCCCHHHHHHHhhhhhccCCCce--eeeEEEE
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGV----NPAVFEVADGDEAAVLDELSRIDVENGGGII--QFPAVFV 110 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi----~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~--tvP~vfI 110 (142)
..-+++|..+||+.|+.++..|++..- +..++.+|.+....+.+.+ |.. ++|++.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~---------~i~~~~~P~~~~ 74 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYF---------GLKEEDLPVIAI 74 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHc---------CCChhhCCEEEE
Confidence 345777888999999999998877543 3456666666544333332 444 7888765
No 178
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=96.29 E-value=0.024 Score=42.78 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=42.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
+++|..+ +++|.++.-+|.++|++|+.+.+|.........++.++ +....||++..
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~i-----NP~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRI-----SPNNKIPAIVD 57 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhh-----CcCCCCCEEEe
Confidence 4688776 69999999999999999999888765431111345454 56779999987
No 179
>PRK10357 putative glutathione S-transferase; Provisional
Probab=96.16 E-value=0.021 Score=42.43 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=47.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE-CCEEeeccHHHH
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV-GGKLFGGLDRVM 122 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI-~G~~IGG~del~ 122 (142)
.+|+.+.||++++++-+|+..|++|+.++++..... .++.++ +....+|++.. +|..+-...-+.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~---~~~~~~-----nP~g~vP~L~~~~g~~l~eS~aI~ 67 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNAD---NGVAQY-----NPLGKVPALVTEEGECWFDSPIIA 67 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCc---hhhhhc-----CCccCCCeEEeCCCCeeecHHHHH
Confidence 689999999999999999999999998887764332 233333 56779999985 565554444443
No 180
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.14 E-value=0.013 Score=39.54 Aligned_cols=25 Identities=16% Similarity=0.410 Sum_probs=19.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhC
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGH 70 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~ 70 (142)
..-|+.|..+|||.|++....|+++
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~ 46 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSI 46 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHH
Confidence 3457888889999999887666654
No 181
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.025 Score=43.53 Aligned_cols=61 Identities=18% Similarity=0.125 Sum_probs=50.4
Q ss_pred CCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 56 GCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 56 ~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
.||+|+++-..|...+++|.+..||..... +.++.+ +..+.+|.+-.||+.+-..+.+.+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~-----sp~~~~P~l~~d~~~~tDs~~Ie~~ 80 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDI-----SPGGKPPVLKFDEKWVTDSDKIEEF 80 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhh-----CCCCCCCeEEeCCceeccHHHHHHH
Confidence 699999999999999999988888887665 456555 6778999999999988877766554
No 182
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.08 E-value=0.036 Score=35.56 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=47.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
.++|..+.++.|.+++-+|.+.|++|+.+.++..++ . .++..- .......+|.+.+||..+....-+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~--~-~~~~~~---~~~~~g~vP~L~~~g~~l~ES~AI~~ 70 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAED--L-EKLKKD---GSLMFQQVPMVEIDGMKLVQTRAILN 70 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHH--H-Hhhccc---cCCCCCCCCEEEECCEEEeeHHHHHH
Confidence 468888888999999999999999999888875321 1 111110 00124589999999877766554444
No 183
>PRK11752 putative S-transferase; Provisional
Probab=96.06 E-value=0.03 Score=44.10 Aligned_cols=75 Identities=9% Similarity=0.034 Sum_probs=51.7
Q ss_pred HhcCCCEEEEEcCCCchHHHHHHHHHhC------CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECC----
Q 032368 43 MLVENAVLVLGRPGCCMCHVVKTLLLGH------GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGG---- 112 (142)
Q Consensus 43 ~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~------gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G---- 112 (142)
....+.+.+|+.+ ||+|.++.-+|+++ |++|+.+.++.........++.++ +....||++..++
T Consensus 39 ~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~i-----NP~GkVP~Lv~~dg~~~ 112 (264)
T PRK11752 39 PVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEI-----NPNSKIPALLDRSGNPP 112 (264)
T ss_pred CCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhh-----CCCCCCCEEEeCCCCCC
Confidence 4556689999965 99999999999996 888988887764321112345454 5667999998753
Q ss_pred EEeeccHHHHh
Q 032368 113 KLFGGLDRVMA 123 (142)
Q Consensus 113 ~~IGG~del~~ 123 (142)
..+-...-+.+
T Consensus 113 ~~L~ES~AIl~ 123 (264)
T PRK11752 113 IRVFESGAILL 123 (264)
T ss_pred eEEEcHHHHHH
Confidence 34555544444
No 184
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.00 E-value=0.046 Score=38.16 Aligned_cols=22 Identities=18% Similarity=0.313 Sum_probs=16.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHH
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLL 68 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~ 68 (142)
.-++.|..+||+.|++....|.
T Consensus 19 ~vll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 19 TVGLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEEEECCCCchHHHHHHHHH
Confidence 3467778899999998766554
No 185
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=95.96 E-value=0.054 Score=36.94 Aligned_cols=74 Identities=11% Similarity=0.156 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCC--EEEEEcCCCchHHHHHH-HHHhCCC------CcEEEEeeCCCCHHHHHHHhhhhhccCCCceee
Q 032368 35 TAAKSVEKMLVENA--VLVLGRPGCCMCHVVKT-LLLGHGV------NPAVFEVADGDEAAVLDELSRIDVENGGGIIQF 105 (142)
Q Consensus 35 ~~~~~v~~~~~~~~--Vvvy~~~~Cp~C~~ak~-lL~~~gi------~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tv 105 (142)
+..+.++.+.+.++ ++.+..+||++|+...+ .|..-.+ .|..+.+|.... +. ..+... .+...+
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~-~~~~~~-----~~~~~~ 77 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EG-QRFLQS-----YKVDKY 77 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cH-HHHHHH-----hCccCC
Confidence 45566666665554 44556689999998743 4443322 355555565432 11 233333 356778
Q ss_pred eEEE-E---CCEEe
Q 032368 106 PAVF-V---GGKLF 115 (142)
Q Consensus 106 P~vf-I---~G~~I 115 (142)
|.+. + +|+.+
T Consensus 78 P~~~~i~~~~g~~l 91 (114)
T cd02958 78 PHIAIIDPRTGEVL 91 (114)
T ss_pred CeEEEEeCccCcEe
Confidence 8874 4 45544
No 186
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=95.95 E-value=0.014 Score=44.64 Aligned_cols=68 Identities=24% Similarity=0.264 Sum_probs=35.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCC--cE--EEEe---------eCCCC---HHHHHHHhhhhhccCCCceeeeEEEECC
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVN--PA--VFEV---------ADGDE---AAVLDELSRIDVENGGGIIQFPAVFVGG 112 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~--~~--~i~i---------d~~~~---~~~~~~L~~~~~~~~~g~~tvP~vfI~G 112 (142)
|.+|++-+|..|--|-++|.++.-. .- -+.| |.... ..-+..+.+.. +.+....||++|||
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~---~~~~vYTPQ~vVnG 78 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRF---GLRSVYTPQVVVNG 78 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHT---T-S---SSEEEETT
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHh---CCCCCcCCeEEECC
Confidence 7899999999999999999886432 11 1122 12122 12222333331 24456679999999
Q ss_pred E-EeeccH
Q 032368 113 K-LFGGLD 119 (142)
Q Consensus 113 ~-~IGG~d 119 (142)
+ ...|++
T Consensus 79 ~~~~~g~~ 86 (202)
T PF06764_consen 79 REHRVGSD 86 (202)
T ss_dssp TEEEETT-
T ss_pred eeeeeccC
Confidence 5 566766
No 187
>PTZ00102 disulphide isomerase; Provisional
Probab=95.86 E-value=0.013 Score=49.21 Aligned_cols=55 Identities=16% Similarity=0.279 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCC------cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVN------PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~------~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
.-++.|+.+||++|+.....|.+.... ..+..+|.+.+... ... .+...+|++++
T Consensus 377 ~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~---~~~------~~v~~~Pt~~~ 437 (477)
T PTZ00102 377 DVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP---LEE------FSWSAFPTILF 437 (477)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc---hhc------CCCcccCeEEE
Confidence 357788889999999998888765322 33455666544321 111 24567777744
No 188
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.031 Score=48.12 Aligned_cols=69 Identities=16% Similarity=0.331 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCC--EEEEEcCCCchHH-------HHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeE
Q 032368 37 AKSVEKMLVENA--VLVLGRPGCCMCH-------VVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPA 107 (142)
Q Consensus 37 ~~~v~~~~~~~~--Vvvy~~~~Cp~C~-------~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~ 107 (142)
.+.+.+.+..+. .+-|+.|||.+|+ +|-..|.+.+-+.....||...+.++..++ +.+.+|+
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y---------~v~gyPT 102 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKY---------EVRGYPT 102 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhh---------cCCCCCe
Confidence 455677777765 4679999999999 456677777777778888887764433333 4455555
Q ss_pred --EEECCEE
Q 032368 108 --VFVGGKL 114 (142)
Q Consensus 108 --vfI~G~~ 114 (142)
||.+|+.
T Consensus 103 lkiFrnG~~ 111 (493)
T KOG0190|consen 103 LKIFRNGRS 111 (493)
T ss_pred EEEEecCCc
Confidence 4778875
No 189
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=95.80 E-value=0.016 Score=39.61 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEe
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEV 79 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~i 79 (142)
...++.|+.+|||.|+.....|.++.-.+.++-|
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i 54 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSV 54 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHhhCCEEEE
Confidence 4468888899999999887777655433444333
No 190
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.015 Score=43.95 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=55.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE-CCEEeeccHHHHhhhh--
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV-GGKLFGGLDRVMATHI-- 126 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI-~G~~IGG~del~~~~~-- 126 (142)
.+|..+.||||.+|+-++-=++++++..-++.+++.- -.+ + -|...||.+.- +|++.+..=|+.....
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T---p~r-m-----iG~KqVPiL~Kedg~~m~ESlDIV~y~d~~ 72 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET---PIR-M-----IGQKQVPILQKEDGRAMPESLDIVHYVDEL 72 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccC---hhh-h-----hcccccceEEccccccchhhhHHHHHHHHh
Confidence 4688899999999999999999999877766665421 112 2 48889998865 5788777666554432
Q ss_pred ----------cCChHHHHHhcC
Q 032368 127 ----------SGDLVPILKEAG 138 (142)
Q Consensus 127 ----------~g~L~~~L~~~g 138 (142)
.-+.++||++++
T Consensus 73 ~~~~~lt~~~~pai~~wlrkv~ 94 (215)
T COG2999 73 DGKPLLTGKVRPAIEAWLRKVN 94 (215)
T ss_pred cCchhhccCcCHHHHHHHHHhc
Confidence 223566776654
No 191
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=95.74 E-value=0.062 Score=34.24 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=42.2
Q ss_pred CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhh
Q 032368 55 PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATH 125 (142)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~ 125 (142)
+.+|+|-++..+|+-.+++|++.... +.. . +....+|.+..+|+.|++++.+.+..
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~------~--------sp~gkLP~l~~~~~~i~d~~~Ii~~L 69 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW------R--------SPTGKLPALLTSGTKISGPEKIIEYL 69 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCC------C--------CCCCccCEEEECCEEecChHHHHHHH
Confidence 35799999999999999998654221 111 1 23457999999999999999877754
No 192
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=95.73 E-value=0.019 Score=37.52 Aligned_cols=39 Identities=15% Similarity=0.048 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhC----C-CCcEEEEeeCCC
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGH----G-VNPAVFEVADGD 83 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~----g-i~~~~i~id~~~ 83 (142)
...-++.|..+||+.|++....|.+. + -.+.++-|+.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~ 62 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC
Confidence 34468888889999999766555543 2 123455555554
No 193
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=95.71 E-value=0.043 Score=37.77 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEeeCC
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVN--PAVFEVADG 82 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~--~~~i~id~~ 82 (142)
..-|+.|..+|||.|......|.++.-. +.++.|+.+
T Consensus 26 k~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~ 64 (127)
T cd03010 26 KPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYK 64 (127)
T ss_pred CEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence 3357888899999999887777665322 455555543
No 194
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.023 Score=47.42 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=54.6
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhC---CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeE
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGH---GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPA 107 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~---gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~ 107 (142)
...++..+.++.+-......-|.+-.|..|-.+.+.|+-. +-...-.-||- .-++++.+.. +.-.||+
T Consensus 102 k~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdG---a~Fq~Evear------~IMaVPt 172 (520)
T COG3634 102 KEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDG---ALFQDEVEAR------NIMAVPT 172 (520)
T ss_pred chhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecc---hhhHhHHHhc------cceecce
Confidence 3567778888888888888888887777777666665554 33333344443 4466777643 6679999
Q ss_pred EEECCEEeec
Q 032368 108 VFVGGKLFGG 117 (142)
Q Consensus 108 vfI~G~~IGG 117 (142)
||+||+.+|.
T Consensus 173 vflnGe~fg~ 182 (520)
T COG3634 173 VFLNGEEFGQ 182 (520)
T ss_pred EEEcchhhcc
Confidence 9999998864
No 195
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=95.59 E-value=0.083 Score=33.57 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=45.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCc-eeeeEEEEC-CEEeeccHHHHh
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGI-IQFPAVFVG-GKLFGGLDRVMA 123 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~-~tvP~vfI~-G~~IGG~del~~ 123 (142)
+.+|..++ .|..++-+|+..|++|+.+.+|........+++.+. ... ..+|.+..+ |..+-....+..
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~-----~p~~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAI-----NPMFGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHH-----TTTSSSSSEEEETTTEEEESHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccchhhhhc-----ccccceeeEEEECCCCEEEcHHHHHH
Confidence 45666556 899999999999999999888864432111344443 344 789999999 888766554443
No 196
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.056 Score=41.86 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEe
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLF 115 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I 115 (142)
-.|.||+..+|..|-..-+.|++.|.--.+.-++...-.. .+++ .+..++|.||+||+.+
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~-------~~V~SvP~Vf~DGel~ 70 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFE-------KGVISVPSVFIDGELV 70 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhh-------cceeecceEEEcCeEE
Confidence 3699999999999999999999988754333333332211 3343 3678999999999986
No 197
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.57 E-value=0.086 Score=38.30 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhC------------CCCcEEEEeeCCCC
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGH------------GVNPAVFEVADGDE 84 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~------------gi~~~~i~id~~~~ 84 (142)
..-++-|+.+|||.|++....|.++ +-.++++-|+.+.+
T Consensus 26 k~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~ 76 (146)
T cd03008 26 RVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQS 76 (146)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCC
Confidence 3346677889999999988888652 11366777766654
No 198
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.026 Score=44.75 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCc---EEEEeeCCCCHHHHHHHhhhhhccCCCceeeeE--EEECCEEe
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVNP---AVFEVADGDEAAVLDELSRIDVENGGGIIQFPA--VFVGGKLF 115 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~---~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~--vfI~G~~I 115 (142)
..-||=|+.+||..|+++-.+|..+.-.| .+..||.++...... ..|....|+ +|.+|..|
T Consensus 22 k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa---------~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 22 KLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAA---------TNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred eEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhh---------hcCcccCceEEEEecCeEe
Confidence 34578899999999999999999987665 466677665422111 146666665 58899875
No 199
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.55 E-value=0.029 Score=40.07 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCCC--EEEEEcCCCchHHHHHHH-HHhCC------CCcEEEEeeCC
Q 032368 34 DTAAKSVEKMLVENA--VLVLGRPGCCMCHVVKTL-LLGHG------VNPAVFEVADG 82 (142)
Q Consensus 34 ~~~~~~v~~~~~~~~--Vvvy~~~~Cp~C~~ak~l-L~~~g------i~~~~i~id~~ 82 (142)
.+.++.++.+.+.++ ++.|+++|||+|++.++. +.... -.|..+.++.+
T Consensus 10 ~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d 67 (130)
T cd02960 10 QTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHE 67 (130)
T ss_pred hhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEec
Confidence 367777777776654 556777899999988764 33322 23554566654
No 200
>smart00594 UAS UAS domain.
Probab=95.52 E-value=0.1 Score=36.22 Aligned_cols=70 Identities=16% Similarity=0.161 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCC--CEEEEEcCCCchHHHHHH-HHHhCCC------CcEEEEeeCCCCHHHHHHHhhhhhccCCCcee
Q 032368 34 DTAAKSVEKMLVEN--AVLVLGRPGCCMCHVVKT-LLLGHGV------NPAVFEVADGDEAAVLDELSRIDVENGGGIIQ 104 (142)
Q Consensus 34 ~~~~~~v~~~~~~~--~Vvvy~~~~Cp~C~~ak~-lL~~~gi------~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~t 104 (142)
.+.++.++.+.++. .++.+..+||++|+...+ +|..-.+ .|-...+|...... ..+... .+..+
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~-----~~~~~ 86 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQF-----YKLDS 86 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHh-----cCcCC
Confidence 34677777777664 466667789999997533 3333221 34454555554322 234333 46678
Q ss_pred eeEEEE
Q 032368 105 FPAVFV 110 (142)
Q Consensus 105 vP~vfI 110 (142)
+|.+.+
T Consensus 87 ~P~~~~ 92 (122)
T smart00594 87 FPYVAI 92 (122)
T ss_pred CCEEEE
Confidence 888855
No 201
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.36 E-value=0.1 Score=33.94 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=29.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHh----CC--CCcEEEEeeCCCC-HHHHHHHhh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLG----HG--VNPAVFEVADGDE-AAVLDELSR 93 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~----~g--i~~~~i~id~~~~-~~~~~~L~~ 93 (142)
-++.|..+||+.|.+....|.+ ++ -.++++-|..+++ .+..+.+++
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~ 56 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKK 56 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHT
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHh
Confidence 3678899999999977666655 34 5567777777666 344444544
No 202
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=95.25 E-value=0.07 Score=39.70 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=25.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEeeCCCC
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGV-NPAVFEVADGDE 84 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi-~~~~i~id~~~~ 84 (142)
-|+.|+.+|||.|++....|.++.- .++++-|+.+++
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~ 108 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDD 108 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 4777899999999988777766532 345566654443
No 203
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.23 E-value=0.04 Score=38.95 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCEEEEEc---------CCCchHHHHHHHHHh----CCCCcEEEEeeCC
Q 032368 35 TAAKSVEKMLVENAVLVLGR---------PGCCMCHVVKTLLLG----HGVNPAVFEVADG 82 (142)
Q Consensus 35 ~~~~~v~~~~~~~~Vvvy~~---------~~Cp~C~~ak~lL~~----~gi~~~~i~id~~ 82 (142)
+.++.++..-+...|.+|.. ||||+|.+|..++.+ ..-+..++.++..
T Consensus 14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG 74 (128)
T KOG3425|consen 14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVG 74 (128)
T ss_pred HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEec
Confidence 34555555545555655543 699999999766543 3444555555543
No 204
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=95.16 E-value=0.083 Score=39.51 Aligned_cols=20 Identities=20% Similarity=0.678 Sum_probs=15.7
Q ss_pred CEEEEEcCCCchHHHHHHHH
Q 032368 48 AVLVLGRPGCCMCHVVKTLL 67 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL 67 (142)
-|+.|+.+|||.|++....+
T Consensus 77 vvl~F~atwCp~C~~~lp~l 96 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPII 96 (189)
T ss_pred EEEEEECCCChhHHHHHHHH
Confidence 46778999999999765554
No 205
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=95.12 E-value=0.078 Score=38.91 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEeeCC
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGV-NPAVFEVADG 82 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi-~~~~i~id~~ 82 (142)
.-++.|+.+|||.|++....|+++.- .+.++-++.+
T Consensus 65 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~ 101 (173)
T TIGR00385 65 PVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYK 101 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 35778888999999988777665522 2455555543
No 206
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.73 E-value=0.032 Score=43.84 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.7
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLL 68 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~ 68 (142)
.|++|+-+.||||++.-.-+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 489999999999999866554
No 207
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=94.69 E-value=0.09 Score=41.88 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=49.5
Q ss_pred HHHhcCCCEEEEEcC---C----CchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCE
Q 032368 41 EKMLVENAVLVLGRP---G----CCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGK 113 (142)
Q Consensus 41 ~~~~~~~~Vvvy~~~---~----Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~ 113 (142)
++..+...|-+|.-+ . .|||-++..+|...+++|+.++-. +..+ +...++|-|-+||+
T Consensus 38 k~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~----------~~~r-----Sr~G~lPFIELNGe 102 (281)
T KOG4244|consen 38 KTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS----------LKRR-----SRNGTLPFIELNGE 102 (281)
T ss_pred hhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc----------ceee-----ccCCCcceEEeCCe
Confidence 344556667777664 2 589999999999999999866422 2211 45669999999999
Q ss_pred EeeccHHHH
Q 032368 114 LFGGLDRVM 122 (142)
Q Consensus 114 ~IGG~del~ 122 (142)
+|-+.+.+.
T Consensus 103 ~iaDS~~I~ 111 (281)
T KOG4244|consen 103 HIADSDLIE 111 (281)
T ss_pred eccccHHHH
Confidence 999988643
No 208
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=94.63 E-value=0.12 Score=38.08 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=32.4
Q ss_pred HHHHhcCCCEEEE-EcCCCchHH----HHHHHHHhC---CCCcEEEEeeCCCCH-HHHHHHh
Q 032368 40 VEKMLVENAVLVL-GRPGCCMCH----VVKTLLLGH---GVNPAVFEVADGDEA-AVLDELS 92 (142)
Q Consensus 40 v~~~~~~~~Vvvy-~~~~Cp~C~----~ak~lL~~~---gi~~~~i~id~~~~~-~~~~~L~ 92 (142)
+.+.....-|.+| +..|||.|+ ..++++++. +-+++++-|+.+.+. ++.++++
T Consensus 27 ~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~ 88 (157)
T KOG2501|consen 27 ASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYML 88 (157)
T ss_pred HhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHH
Confidence 3444444445554 446999999 445555554 456898888888763 3333444
No 209
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=94.62 E-value=0.12 Score=34.62 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=31.9
Q ss_pred EEEEcC-CCchHH------HHHHHHHh--------CCCCcEEEEeeCCCCHH-HHHHHhhhhhccCCCceeeeEEEECCE
Q 032368 50 LVLGRP-GCCMCH------VVKTLLLG--------HGVNPAVFEVADGDEAA-VLDELSRIDVENGGGIIQFPAVFVGGK 113 (142)
Q Consensus 50 vvy~~~-~Cp~C~------~ak~lL~~--------~gi~~~~i~id~~~~~~-~~~~L~~~~~~~~~g~~tvP~vfI~G~ 113 (142)
+||+.. -|+-|. ....+|+. ..+.+.+++|....+.+ .++..+++. ...--.|.|.|+|+
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~----ede~fYPlV~i~~e 76 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERIL----EDELFYPLVVINDE 76 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHH----TTSS-SSEEEETTE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHH----hcccccceEEECCE
Confidence 467775 477775 33333332 22334666666655432 222233332 34567899999999
Q ss_pred Eeecc
Q 032368 114 LFGGL 118 (142)
Q Consensus 114 ~IGG~ 118 (142)
.||.-
T Consensus 77 iV~EG 81 (93)
T PF07315_consen 77 IVAEG 81 (93)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 99743
No 210
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=94.58 E-value=0.36 Score=31.08 Aligned_cols=73 Identities=12% Similarity=-0.015 Sum_probs=45.1
Q ss_pred EEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHH--HHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 51 VLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAV--LDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 51 vy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~--~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+|+-..-+.|++++-+|...|++|+.+.++....... .+.+.... +...-..++|.+..||..+....-+...
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~-~~~~P~g~vP~L~~~g~~l~ES~AIl~Y 77 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKF-KLGLDFPNLPYYIDGDVKLTQSNAILRY 77 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccch-hcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence 4444455788999999999999999888876442110 11121110 0001456899999998877655544443
No 211
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=94.51 E-value=0.062 Score=40.23 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLG 69 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~ 69 (142)
...|++|+.+.||||+++...+.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 356999999999999999999974
No 212
>PHA03075 glutaredoxin-like protein; Provisional
Probab=94.45 E-value=0.062 Score=37.72 Aligned_cols=35 Identities=17% Similarity=0.440 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeC
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVAD 81 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~ 81 (142)
..+++|++|.|+-|+-+.++|+++.-+|++..|+.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNI 37 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe
Confidence 35889999999999999999999988887665544
No 213
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.19 Score=37.35 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCC--CEEEEEcCCCchHHHHHHHHHh
Q 032368 35 TAAKSVEKMLVEN--AVLVLGRPGCCMCHVVKTLLLG 69 (142)
Q Consensus 35 ~~~~~v~~~~~~~--~Vvvy~~~~Cp~C~~ak~lL~~ 69 (142)
+..+..+++.-.. -+.||.+++|+||.+.|+-+..
T Consensus 30 ~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~ 66 (182)
T COG2143 30 DVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKN 66 (182)
T ss_pred hhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcc
Confidence 3455566655444 3899999999999988765543
No 214
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=94.38 E-value=0.091 Score=37.90 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhC----C-CCcEEEEeeCCCC
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGH----G-VNPAVFEVADGDE 84 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~----g-i~~~~i~id~~~~ 84 (142)
...-++.|+.+|||+|++....|.+. . -.+.++-++.+.+
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~ 105 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET 105 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 33457888889999999765554433 2 1245556655443
No 215
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=94.33 E-value=0.32 Score=31.27 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=41.3
Q ss_pred CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 55 PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+..+.|-++.-+|+..|++|+.+.+.. . ... +....+|.+.+||+.|++..-+..+
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~---~---~~~--------~P~GkVP~L~~dg~vI~eS~aIl~y 70 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN---A---EFM--------SPSGKVPFIRVGNQIVSEFGPIVQF 70 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC---c---ccc--------CCCCcccEEEECCEEEeCHHHHHHH
Confidence 457889999999999999998773211 1 011 2335799999999999888866654
No 216
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.33 E-value=0.051 Score=47.16 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=18.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhC
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGH 70 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~ 70 (142)
-|+-|+.+|||.|++....|.++
T Consensus 59 VvV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 59 TLIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHH
Confidence 47778899999999987777654
No 217
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.03 E-value=0.045 Score=43.57 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=51.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC---cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEeeccHHHH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN---PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLFGGLDRVM 122 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~IGG~del~ 122 (142)
-|+-|+.+.++.|..+-..|..+-.+ ..++.|...... +...+ ....+|+| |.+|+.++.+-.+.
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f---------~~~~LPtllvYk~G~l~~~~V~l~ 218 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENF---------PDKNLPTLLVYKNGDLIGNFVGLT 218 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS----------TTC-SEEEEEETTEEEEEECTGG
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCC---------cccCCCEEEEEECCEEEEeEEehH
Confidence 46778889999999998888776433 356666554321 11122 22345554 66999888775544
Q ss_pred hh----hhcCChHHHHHhcCccC
Q 032368 123 AT----HISGDLVPILKEAGALW 141 (142)
Q Consensus 123 ~~----~~~g~L~~~L~~~g~l~ 141 (142)
+. +....|+.+|.+.|+|-
T Consensus 219 ~~~g~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 219 DLLGDDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp GCT-TT--HHHHHHHHHTTTSSS
T ss_pred HhcCCCCCHHHHHHHHHHcCCCC
Confidence 33 22335899999999873
No 218
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=93.99 E-value=0.21 Score=35.05 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=26.7
Q ss_pred CCEEEEEcC-CCchHHHHHHHHHhC-----CCCcEEEEeeCCCCHHHHHHHh
Q 032368 47 NAVLVLGRP-GCCMCHVVKTLLLGH-----GVNPAVFEVADGDEAAVLDELS 92 (142)
Q Consensus 47 ~~Vvvy~~~-~Cp~C~~ak~lL~~~-----gi~~~~i~id~~~~~~~~~~L~ 92 (142)
..|+.|..+ |||.|......|.++ .-.+.++-|..+.+....+.++
T Consensus 30 ~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~ 81 (146)
T PF08534_consen 30 PVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLK 81 (146)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHH
T ss_pred eEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHH
Confidence 347777878 999999776555443 1224455555554443444444
No 219
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=93.41 E-value=0.36 Score=34.17 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=35.5
Q ss_pred HHHHHHHhCCCCcEEEEeeCCCC-----HHHHHHHhhhhhccCCCceeeeEEEECCEEe--eccHHH
Q 032368 62 VVKTLLLGHGVNPAVFEVADGDE-----AAVLDELSRIDVENGGGIIQFPAVFVGGKLF--GGLDRV 121 (142)
Q Consensus 62 ~ak~lL~~~gi~~~~i~id~~~~-----~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I--GG~del 121 (142)
.+.+.|++.|++..-+++..++. ..+.+.|+. .|...+|.++|||+.+ |.|-..
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~------~G~e~LPitlVdGeiv~~G~YPt~ 91 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT------EGAEALPITLVDGEIVKTGRYPTN 91 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH------H-GGG-SEEEETTEEEEESS---H
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH------cCcccCCEEEECCEEEEecCCCCH
Confidence 45677888999999999988875 344455544 4888999999999975 666433
No 220
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.24 E-value=0.13 Score=36.20 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcC-CCE-EEEEc-------CCCchHHHHHHHHH----hCCCCcEEEEeeC
Q 032368 35 TAAKSVEKMLVE-NAV-LVLGR-------PGCCMCHVVKTLLL----GHGVNPAVFEVAD 81 (142)
Q Consensus 35 ~~~~~v~~~~~~-~~V-vvy~~-------~~Cp~C~~ak~lL~----~~gi~~~~i~id~ 81 (142)
...+.+++.... .++ ++|+. +|||+|.++..+++ ...-...++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~V 66 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEV 66 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE-
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEc
Confidence 345555554433 343 44442 59999999985554 4333445554443
No 221
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.23 E-value=0.22 Score=31.73 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=25.3
Q ss_pred EcCCCchHHHHHHHHHhCCCC----cEEEEeeCC-CCHHHHHHH
Q 032368 53 GRPGCCMCHVVKTLLLGHGVN----PAVFEVADG-DEAAVLDEL 91 (142)
Q Consensus 53 ~~~~Cp~C~~ak~lL~~~gi~----~~~i~id~~-~~~~~~~~L 91 (142)
..+|||+|+.....|.+..-+ ..++.++.. ......+.+
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEF 83 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHH
Confidence 599999999998888775432 345566664 343333444
No 222
>PRK10542 glutathionine S-transferase; Provisional
Probab=92.97 E-value=0.33 Score=35.83 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=44.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCH-HHHHHHhhhhhccCCCceeeeEEEE-CCEEeeccHHHHh
Q 032368 50 LVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEA-AVLDELSRIDVENGGGIIQFPAVFV-GGKLFGGLDRVMA 123 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~-~~~~~L~~~~~~~~~g~~tvP~vfI-~G~~IGG~del~~ 123 (142)
.+|+.+. +.+.++.-+|.+.|++|+.+.++..... ...+++.++ +....+|++.+ ||..|-....+.+
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~-----nP~g~vPvL~~~~g~~l~eS~aI~~ 71 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAI-----NPKGQVPALLLDDGTLLTEGVAIMQ 71 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHh-----CcCCCCCeEEeCCCcEeecHHHHHH
Confidence 4566543 3477888899999999998888764221 011345444 56679999987 6666665555544
No 223
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=92.88 E-value=0.53 Score=34.18 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=50.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeecc---HHH
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGL---DRV 121 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~---del 121 (142)
....+++|..|+|.=|+.-.+.|+..|++...++.|.. ..+++.|.- .....+==+..|||.+|-|. +++
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~--~alK~~~gI-----p~e~~SCHT~VI~Gy~vEGHVPa~aI 96 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF--LALKRRLGI-----PYEMQSCHTAVINGYYVEGHVPAEAI 96 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH--HHHHHhcCC-----ChhhccccEEEEcCEEEeccCCHHHH
Confidence 44579999999999999999999999987665544433 222222211 11223445789999999886 344
Q ss_pred Hhhhhc
Q 032368 122 MATHIS 127 (142)
Q Consensus 122 ~~~~~~ 127 (142)
.++.++
T Consensus 97 ~~ll~~ 102 (149)
T COG3019 97 ARLLAE 102 (149)
T ss_pred HHHHhC
Confidence 444433
No 224
>PTZ00057 glutathione s-transferase; Provisional
Probab=92.71 E-value=0.93 Score=33.90 Aligned_cols=72 Identities=8% Similarity=0.178 Sum_probs=49.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHH--HHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVL--DELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~--~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
.+++|+.+..+.|..++-+|+..|++|+.+.++...+ +.. +++.. +..+....+|.+.+||..+....-+..
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~-~~~~~~~~~~---~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGD-AFIEFKNFKK---EKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccch-HHHHHHhccc---cCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 4789998888999999999999999998886643221 211 11110 002567899999999987766655444
No 225
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=92.68 E-value=0.19 Score=41.17 Aligned_cols=73 Identities=18% Similarity=0.301 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhcCC-CEEEEEcCCCchHHHHHHHHHhCCCCcEE----EEeeCCC---CHHHHHHHhhhhhccCCCceee
Q 032368 34 DTAAKSVEKMLVEN-AVLVLGRPGCCMCHVVKTLLLGHGVNPAV----FEVADGD---EAAVLDELSRIDVENGGGIIQF 105 (142)
Q Consensus 34 ~~~~~~v~~~~~~~-~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~----i~id~~~---~~~~~~~L~~~~~~~~~g~~tv 105 (142)
.|..+++++...+. =.+=|+.|||.+|++...++++.|.+... +.+.+.+ -..+..++ |...+
T Consensus 31 eDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnef---------giqGY 101 (468)
T KOG4277|consen 31 EDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEF---------GIQGY 101 (468)
T ss_pred hhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhh---------ccCCC
Confidence 34455555544443 36778899999999999999988765321 2333322 23333333 56677
Q ss_pred eEE-EECCEEe
Q 032368 106 PAV-FVGGKLF 115 (142)
Q Consensus 106 P~v-fI~G~~I 115 (142)
|+| |..|.+.
T Consensus 102 PTIk~~kgd~a 112 (468)
T KOG4277|consen 102 PTIKFFKGDHA 112 (468)
T ss_pred ceEEEecCCee
Confidence 776 5555543
No 226
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.66 E-value=0.27 Score=33.34 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=39.7
Q ss_pred hcCCCEEEEEcC-CCchHH------HHHHHHHh----C--CCCc--EEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE
Q 032368 44 LVENAVLVLGRP-GCCMCH------VVKTLLLG----H--GVNP--AVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV 108 (142)
Q Consensus 44 ~~~~~Vvvy~~~-~Cp~C~------~ak~lL~~----~--gi~~--~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v 108 (142)
.+..+++||+.. -|..|. ....+|+. . +.+| ++++|-..+..+.-..+.+.. ....--.|.|
T Consensus 2 ~~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI---~~dey~YPli 78 (106)
T COG4837 2 VNEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKI---EQDEYFYPLI 78 (106)
T ss_pred CceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHH---hcccccceEE
Confidence 345578899886 476665 33444433 2 3444 555553333322112222221 2445678999
Q ss_pred EECCEEeecc
Q 032368 109 FVGGKLFGGL 118 (142)
Q Consensus 109 fI~G~~IGG~ 118 (142)
.|+|+.|+.-
T Consensus 79 vvedeiVaeG 88 (106)
T COG4837 79 VVEDEIVAEG 88 (106)
T ss_pred EEcceEeecC
Confidence 9999999643
No 227
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=92.63 E-value=1 Score=31.51 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHhcCC--CEEEEEc--CCCc---hHHHHHHHHHhCCCCcEEEEeeCCC--CHHHHHHHhhhhhccCCCce--eeeEE
Q 032368 40 VEKMLVEN--AVLVLGR--PGCC---MCHVVKTLLLGHGVNPAVFEVADGD--EAAVLDELSRIDVENGGGII--QFPAV 108 (142)
Q Consensus 40 v~~~~~~~--~Vvvy~~--~~Cp---~C~~ak~lL~~~gi~~~~i~id~~~--~~~~~~~L~~~~~~~~~g~~--tvP~v 108 (142)
+.+.++.+ -+|.|.. |||. .|+++-.-+.+..-+..+-.||.+. +.+. ..|.+. .+.. .+|+|
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~-~~L~~~-----y~I~~~gyPTl 84 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN-MELGER-----YKLDKESYPVI 84 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh-HHHHHH-----hCCCcCCCCEE
Confidence 33444444 4788999 8888 8888776665443333344555532 1111 234332 4666 77866
Q ss_pred --EECCE
Q 032368 109 --FVGGK 113 (142)
Q Consensus 109 --fI~G~ 113 (142)
|.+|+
T Consensus 85 ~lF~~g~ 91 (116)
T cd03007 85 YLFHGGD 91 (116)
T ss_pred EEEeCCC
Confidence 66664
No 228
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.49 E-value=0.56 Score=36.10 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=54.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
++.+|+...-|.|+++.-.++..|++|+.+.++.........++..+ ....+||++.-+|-.+=....+...
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~-----nP~~kVP~l~d~~~~l~eS~AI~~Y 73 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKL-----NPLGKVPALEDGGLTLWESHAILRY 73 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhc-----CcCCCCCeEecCCeEEeeHHHHHHH
Confidence 46799999999999999999999999998877766542233444444 5678999999887776666554443
No 229
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.43 E-value=0.26 Score=42.18 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=51.1
Q ss_pred cCCCchHHHHHHHHHhCCC---CcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEEE-------CCEEeeccHHHH
Q 032368 54 RPGCCMCHVVKTLLLGHGV---NPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVFV-------GGKLFGGLDRVM 122 (142)
Q Consensus 54 ~~~Cp~C~~ak~lL~~~gi---~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vfI-------~G~~IGG~del~ 122 (142)
+.+|||=.++.-+-+.+.. +|.+..|-..++ .+ +.|++++.+.+=....-|.|.- .|.++||++|+.
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~--~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~ 78 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWE--DWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFL 78 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHH--HHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHH
Confidence 4689999999877776543 488888888876 33 5677666432223456798875 688999999998
Q ss_pred hhhh
Q 032368 123 ATHI 126 (142)
Q Consensus 123 ~~~~ 126 (142)
++..
T Consensus 79 e~~~ 82 (452)
T cd05295 79 EYAE 82 (452)
T ss_pred HHHH
Confidence 8643
No 230
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=0.43 Score=36.23 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=47.5
Q ss_pred CEEEEE--cCCCchHHHHHHHHHhCCCCcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 48 AVLVLG--RPGCCMCHVVKTLLLGHGVNPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 48 ~Vvvy~--~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+-++|+ .+.|. .+++-.|.-.+++|++.-++-..+ .+.-.+++++ +...+||.+.|||.-+-..--+.+.
T Consensus 5 KpiLYSYWrSSCs--wRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~i-----NPm~kVP~L~i~g~tl~eS~AII~Y 77 (217)
T KOG0868|consen 5 KPILYSYWRSSCS--WRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEI-----NPMEKVPTLVIDGLTLTESLAIIEY 77 (217)
T ss_pred cchhhhhhcccch--HHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhc-----CchhhCCeEEECCEEeehHHHHHHH
Confidence 344444 45564 477777888888888887776554 3333567776 5678999999999987655444444
No 231
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.062 Score=46.29 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCc
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVNP 74 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~ 74 (142)
...+.|+.|||++|++....+++++-.|
T Consensus 386 dVLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 386 DVLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred ceEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 4578899999999999999998886554
No 232
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.51 Score=39.02 Aligned_cols=58 Identities=16% Similarity=0.144 Sum_probs=37.5
Q ss_pred hcCCCEEEEEcCCCchHHHHHHHHHhC----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 44 LVENAVLVLGRPGCCMCHVVKTLLLGH----GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 44 ~~~~~Vvvy~~~~Cp~C~~ak~lL~~~----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
.....++.|..+||++|.+....+.+. .-...+..+|...+..+.+. .+...+|++.+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~---------y~i~gfPtl~~ 107 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEK---------YGIQGFPTLKV 107 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHh---------cCCccCcEEEE
Confidence 355679999999999999876655543 22334556666655443332 46677777754
No 233
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=91.54 E-value=0.33 Score=40.23 Aligned_cols=52 Identities=10% Similarity=0.183 Sum_probs=32.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhC----CC---CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGH----GV---NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~----gi---~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
-++.|+.+||+.|+.....+.++ .- .+.+..+|.+.+. +.. .+..++|++++
T Consensus 367 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----~~~------~~i~~~Pt~~~ 425 (462)
T TIGR01130 367 VLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----VPP------FEVEGFPTIKF 425 (462)
T ss_pred EEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----cCC------CCccccCEEEE
Confidence 47778999999999887776663 21 3455666665432 111 14467787755
No 234
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=91.16 E-value=0.69 Score=34.31 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=27.9
Q ss_pred EEEEcCCCchHHHHHH-HHHhC------CCCcEEEEeeCCCCHHHHHHHh---hhhhccCCCceeeeEE-EE--CCEEee
Q 032368 50 LVLGRPGCCMCHVVKT-LLLGH------GVNPAVFEVADGDEAAVLDELS---RIDVENGGGIIQFPAV-FV--GGKLFG 116 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~-lL~~~------gi~~~~i~id~~~~~~~~~~L~---~~~~~~~~g~~tvP~v-fI--~G~~IG 116 (142)
+-++.++|.+|+.+.+ .|..- +-.|.-+.+|.++.+++-..+. +++ +|..+.|.. |+ +|+.+-
T Consensus 42 l~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~----~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 42 LSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAM----SGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp EEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHH----HS---SSEEEEE-TTS-EEE
T ss_pred EEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHh----cCCCCCCceEEECCCCCeee
Confidence 3345689999996643 23222 2235556777776544333322 221 345566654 43 566653
No 235
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.10 E-value=0.21 Score=34.84 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=19.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLG 69 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~ 69 (142)
...|++|+.+.||+|.+....+.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 346899999999999988666655
No 236
>PTZ00056 glutathione peroxidase; Provisional
Probab=90.25 E-value=0.96 Score=34.17 Aligned_cols=24 Identities=4% Similarity=0.037 Sum_probs=16.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLG 69 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~ 69 (142)
..-|+.|..+|||.|.+-...|.+
T Consensus 40 kvvlv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 40 KVLMITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred CEEEEEEECCCCCChHHHHHHHHH
Confidence 345777888999999964433333
No 237
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=90.15 E-value=1.2 Score=29.98 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=26.9
Q ss_pred CCCEEEEEcC-CCchHHHHHHHHHh----CCC-CcEEEEeeCCCCHHHHHHHhh
Q 032368 46 ENAVLVLGRP-GCCMCHVVKTLLLG----HGV-NPAVFEVADGDEAAVLDELSR 93 (142)
Q Consensus 46 ~~~Vvvy~~~-~Cp~C~~ak~lL~~----~gi-~~~~i~id~~~~~~~~~~L~~ 93 (142)
..-|+.|..+ |||.|.....-|.+ +.. .+.++-|..++..++.+.++.
T Consensus 26 k~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 26 KPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 3456666666 99999855444433 222 345666666554444444443
No 238
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=89.75 E-value=1 Score=42.33 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=19.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhC
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGH 70 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~ 70 (142)
..-|+-|+.+|||.|+.....|+++
T Consensus 421 K~vll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 421 KVVILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred CEEEEEEECCcChhHHhHhHHHHHH
Confidence 3357788999999999877766554
No 239
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=89.49 E-value=0.38 Score=33.14 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh----CC-CCcEEEEee
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLG----HG-VNPAVFEVA 80 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~----~g-i~~~~i~id 80 (142)
..-|+.|..+|||.|.+....|++ ++ ..+.++-|.
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~ 63 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVH 63 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEec
Confidence 345788888999999977555544 33 234555554
No 240
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=89.09 E-value=2 Score=29.96 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=22.4
Q ss_pred EEEEE-cCCCchHHHHHHHHHh----CC-CCcEEEEeeCCCCHHHHHHH
Q 032368 49 VLVLG-RPGCCMCHVVKTLLLG----HG-VNPAVFEVADGDEAAVLDEL 91 (142)
Q Consensus 49 Vvvy~-~~~Cp~C~~ak~lL~~----~g-i~~~~i~id~~~~~~~~~~L 91 (142)
|++|. .+|||.|.+...-|.+ ++ -.+.++-|..++...+++.+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~ 80 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWA 80 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHH
Confidence 44454 6899999965444433 22 22445555554433333333
No 241
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=89.07 E-value=1.1 Score=33.71 Aligned_cols=38 Identities=11% Similarity=0.018 Sum_probs=26.9
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhC---CCCc------EEEEeeCC
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGH---GVNP------AVFEVADG 82 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~---gi~~------~~i~id~~ 82 (142)
..-.|+-|..+||+.|+.-..+|.++ ++++ ..+++|..
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 34478889999999999877766554 5665 45555543
No 242
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=88.86 E-value=1.8 Score=29.96 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCEEEEE-cCCCchHHHHHHHHHhCC-----CCcEEEEeeCCCC
Q 032368 47 NAVLVLG-RPGCCMCHVVKTLLLGHG-----VNPAVFEVADGDE 84 (142)
Q Consensus 47 ~~Vvvy~-~~~Cp~C~~ak~lL~~~g-----i~~~~i~id~~~~ 84 (142)
..|++|. .+|||.|.+-..-|.++. -.+.++-|..+..
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 3455554 689999997655554432 1234555555443
No 243
>PLN02412 probable glutathione peroxidase
Probab=88.69 E-value=2 Score=31.37 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=12.5
Q ss_pred CEEEEEcCCCchHHHH
Q 032368 48 AVLVLGRPGCCMCHVV 63 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~a 63 (142)
-|+.|..+|||.|.+-
T Consensus 32 vlv~f~a~~C~~c~~e 47 (167)
T PLN02412 32 LLIVNVASKCGLTDSN 47 (167)
T ss_pred EEEEEeCCCCCChHHH
Confidence 4555888999999963
No 244
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=88.69 E-value=2.9 Score=29.10 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=21.1
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHhCC---CCcEEEEeeCCC
Q 032368 46 ENAVLVLGRPG-CCMCHVVKTLLLGHG---VNPAVFEVADGD 83 (142)
Q Consensus 46 ~~~Vvvy~~~~-Cp~C~~ak~lL~~~g---i~~~~i~id~~~ 83 (142)
...|+.|..+| ||.|.+-..-|.++. -.+.++-|+.+.
T Consensus 27 k~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~ 68 (143)
T cd03014 27 KVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL 68 (143)
T ss_pred CeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 33455556666 799997655544321 134555555543
No 245
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=88.63 E-value=2.4 Score=29.27 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=16.0
Q ss_pred CCCEEEEEcCCCch-HHHHHHHHH
Q 032368 46 ENAVLVLGRPGCCM-CHVVKTLLL 68 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~-C~~ak~lL~ 68 (142)
..-|+.|..+||+. |.+....|.
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~ 46 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLA 46 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHH
Confidence 34578888899997 985444443
No 246
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=88.37 E-value=3 Score=28.65 Aligned_cols=44 Identities=11% Similarity=0.024 Sum_probs=21.7
Q ss_pred EEEEE-cCCCchHHHHHHHHHh----CC-CCcEEEEeeCCCCHHHHHHHh
Q 032368 49 VLVLG-RPGCCMCHVVKTLLLG----HG-VNPAVFEVADGDEAAVLDELS 92 (142)
Q Consensus 49 Vvvy~-~~~Cp~C~~ak~lL~~----~g-i~~~~i~id~~~~~~~~~~L~ 92 (142)
|+.|. ..|||.|.....-|.+ +. -.+.++-|..+....+.+.++
T Consensus 27 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~ 76 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAE 76 (140)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 44444 5789999854333322 11 123455555544433444443
No 247
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=2.9 Score=32.12 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=54.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
....+++-+....|+-++-+|.-.+++|+...+...+. ...++.- +....+|.+-|||..|...-.+.+.
T Consensus 2 ~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~-----~pfgqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 2 PPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDK-----MPFGQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred CceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhccc-----CCCCCCCEEeECCEeeccHHHHHHH
Confidence 34567777888999999999999999999888887763 1334432 4677999999999998877665553
No 248
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=88.29 E-value=2.3 Score=29.18 Aligned_cols=36 Identities=14% Similarity=0.082 Sum_probs=19.4
Q ss_pred CEEEEE-cCCCchHHHHHHHHHhC----C-CCcEEEEeeCCC
Q 032368 48 AVLVLG-RPGCCMCHVVKTLLLGH----G-VNPAVFEVADGD 83 (142)
Q Consensus 48 ~Vvvy~-~~~Cp~C~~ak~lL~~~----g-i~~~~i~id~~~ 83 (142)
.|++|. ..|||.|.....-|.++ . -.+.++-|..+.
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 344445 57999999754444332 1 124455555543
No 249
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=88.22 E-value=0.54 Score=38.48 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=40.5
Q ss_pred HHHhcCCC--EEEEEcCCCchHHHHHHHHHhCCCC----c-----EEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE
Q 032368 41 EKMLVENA--VLVLGRPGCCMCHVVKTLLLGHGVN----P-----AVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF 109 (142)
Q Consensus 41 ~~~~~~~~--Vvvy~~~~Cp~C~~ak~lL~~~gi~----~-----~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf 109 (142)
..++..+. .+-|+.+||++++..+.++.+.... | .+-.||-+.+..+.+.+.- +..+|+ -||
T Consensus 7 ~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I------~KyPTl-Kvf 79 (375)
T KOG0912|consen 7 DSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHI------NKYPTL-KVF 79 (375)
T ss_pred HHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcc------ccCcee-eee
Confidence 44454454 4568889999999999999875322 1 2335555554443333321 334444 468
Q ss_pred ECCEEe
Q 032368 110 VGGKLF 115 (142)
Q Consensus 110 I~G~~I 115 (142)
.+|...
T Consensus 80 rnG~~~ 85 (375)
T KOG0912|consen 80 RNGEMM 85 (375)
T ss_pred eccchh
Confidence 888654
No 250
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=87.89 E-value=1.4 Score=31.46 Aligned_cols=22 Identities=14% Similarity=-0.040 Sum_probs=15.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHh
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLG 69 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~ 69 (142)
.-|+.|..+||| |.+-...|.+
T Consensus 24 ~vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 24 VLLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEEEcCCCC-chHHHHHHHH
Confidence 346668889999 9976555544
No 251
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=87.56 E-value=2.1 Score=37.60 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=54.3
Q ss_pred HHHHHhcCCC----EEEEEcCCCchHHHHHHHHHh-C-----CCCcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeE
Q 032368 39 SVEKMLVENA----VLVLGRPGCCMCHVVKTLLLG-H-----GVNPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPA 107 (142)
Q Consensus 39 ~v~~~~~~~~----Vvvy~~~~Cp~C~~ak~lL~~-~-----gi~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~ 107 (142)
++++...+++ .+=|+.+||--|+..+++.-+ . -.++.....|...+ ++.++.|+++ +.-.+|.
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~------~~~G~P~ 537 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRL------GVFGVPT 537 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHc------CCCCCCE
Confidence 4555554433 344888999999988776542 1 12345666777554 6677778775 7778887
Q ss_pred EEE-C--CEEeeccHHHHhhhhcCChHHHHHhcC
Q 032368 108 VFV-G--GKLFGGLDRVMATHISGDLVPILKEAG 138 (142)
Q Consensus 108 vfI-~--G~~IGG~del~~~~~~g~L~~~L~~~g 138 (142)
+.+ + |+..-. +-...+.+.+.++|++++
T Consensus 538 ~~ff~~~g~e~~~---l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 538 YLFFGPQGSEPEI---LTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEECCCCCcCcC---CcceecHHHHHHHHHHhc
Confidence 754 3 332222 223334556777776653
No 252
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=87.19 E-value=0.56 Score=33.76 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLG 69 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~ 69 (142)
...|+.|+...||+|.+....+..
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 446999999999999987665543
No 253
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=87.08 E-value=2.1 Score=37.22 Aligned_cols=73 Identities=14% Similarity=0.101 Sum_probs=46.0
Q ss_pred CCccchHHHHHHHHHhcC--C--CEEEEEcCCCchHHHHHHHHHhCCC---CcEEEEeeCCCCHHHHHHHhhhhhccCCC
Q 032368 29 VTEEADTAAKSVEKMLVE--N--AVLVLGRPGCCMCHVVKTLLLGHGV---NPAVFEVADGDEAAVLDELSRIDVENGGG 101 (142)
Q Consensus 29 ~~~~~~~~~~~v~~~~~~--~--~Vvvy~~~~Cp~C~~ak~lL~~~gi---~~~~i~id~~~~~~~~~~L~~~~~~~~~g 101 (142)
..+.+.+.++.+++.+.. . .+.+|..+.|.+|..++++|+++.- +.++..+|...+.+..+ + ++
T Consensus 346 ~~~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~---~------~~ 416 (555)
T TIGR03143 346 GSLLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESET---L------PK 416 (555)
T ss_pred hhccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHh---h------cC
Confidence 346777777777776643 2 4666888899999999999988532 23333344433332212 2 35
Q ss_pred ceeeeEEEE
Q 032368 102 IIQFPAVFV 110 (142)
Q Consensus 102 ~~tvP~vfI 110 (142)
...+|.+.|
T Consensus 417 v~~~P~~~i 425 (555)
T TIGR03143 417 ITKLPTVAL 425 (555)
T ss_pred CCcCCEEEE
Confidence 567788876
No 254
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=86.70 E-value=2.2 Score=28.75 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=41.6
Q ss_pred EEEcCCCchHHHHHHHHHhCCC--CcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCE-EeeccHHHHhhhhc
Q 032368 51 VLGRPGCCMCHVVKTLLLGHGV--NPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGK-LFGGLDRVMATHIS 127 (142)
Q Consensus 51 vy~~~~Cp~C~~ak~lL~~~gi--~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~-~IGG~del~~~~~~ 127 (142)
||.-..||+|....+++..+.. .++++++....+.++.+... +. .....+.-.+.-+|+ ...|.+-+..+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYG-IS---PEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcC-cC---HHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 4677899999999999999865 35566653333322111110 00 001123334433776 88898877665443
No 255
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=86.58 E-value=1.2 Score=35.05 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=23.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCc
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNP 74 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~ 74 (142)
.|.+|++-+|.-|-.+-+.|.++--+.
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~~ 70 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADDP 70 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccCC
Confidence 589999999999999999999875543
No 256
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=86.50 E-value=3.5 Score=26.18 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=41.2
Q ss_pred CCchHHHHHHHHHhCCCC---cEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE-CCEEeeccHHHHhh
Q 032368 56 GCCMCHVVKTLLLGHGVN---PAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV-GGKLFGGLDRVMAT 124 (142)
Q Consensus 56 ~Cp~C~~ak~lL~~~gi~---~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI-~G~~IGG~del~~~ 124 (142)
-.|.|-.+..+|+-.+.+ ++++..+. ++ + +....+|.+.. +|+.+.|+.++.+.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~------~--------Sptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PW------L--------SPTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CC------c--------CCCCCCCEEEECCCcEEECHHHHHHh
Confidence 368999999999999998 54443222 11 1 34568999999 99999999998775
No 257
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=85.52 E-value=0.75 Score=35.17 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=35.5
Q ss_pred hcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC-HHHHH
Q 032368 44 LVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE-AAVLD 89 (142)
Q Consensus 44 ~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~-~~~~~ 89 (142)
....++.+|.+..|+.|......+..-+-++.++-|+...+ ..++.
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~ 153 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQ 153 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHH
Confidence 35668999999999999988877777788888888885444 33433
No 258
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=84.35 E-value=4.9 Score=29.20 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=13.7
Q ss_pred EEEEE-cCCCchHHHHHHHHHh
Q 032368 49 VLVLG-RPGCCMCHVVKTLLLG 69 (142)
Q Consensus 49 Vvvy~-~~~Cp~C~~ak~lL~~ 69 (142)
|+.|. .+|||.|......|.+
T Consensus 33 vl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 33 VLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred EEEEECCCCCCcCHHHHHHHHH
Confidence 44444 6899999976555543
No 259
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=84.32 E-value=4 Score=29.47 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=16.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLG 69 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~ 69 (142)
...|+.|..+|||.|.+...-|.+
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~~ 49 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLNR 49 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHHH
Confidence 345777888999999864444433
No 260
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=84.30 E-value=1.1 Score=31.56 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=16.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHH
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLL 67 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL 67 (142)
...|++|....||+|.+.-..+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHH
Confidence 3469999999999999774433
No 261
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=84.10 E-value=11 Score=25.85 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=35.3
Q ss_pred cCCCEEEEEcCC-CchHHHHHHHHHhC----CCCcEEEEeeCCCCHHHHHHHhhhhhccCCC-ceeeeEEEE--CCEEe
Q 032368 45 VENAVLVLGRPG-CCMCHVVKTLLLGH----GVNPAVFEVADGDEAAVLDELSRIDVENGGG-IIQFPAVFV--GGKLF 115 (142)
Q Consensus 45 ~~~~Vvvy~~~~-Cp~C~~ak~lL~~~----gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g-~~tvP~vfI--~G~~I 115 (142)
...+++||=-+. ||-+..|.+-|++. .-...++-+|..++..+=.++.+.+ | .-.-||+++ ||+.+
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~-----~V~HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDF-----GVKHESPQVILIKNGKVV 91 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHH-----T----SSEEEEEETTEEE
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHh-----CCCcCCCcEEEEECCEEE
Confidence 356788887765 99999998777664 2113344555555544445555442 3 224477755 88876
No 262
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=84.08 E-value=5.6 Score=28.89 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=21.9
Q ss_pred CCEEEEEcCC-CchHHHHHHHHHhCC---CCcEEEEeeCCC
Q 032368 47 NAVLVLGRPG-CCMCHVVKTLLLGHG---VNPAVFEVADGD 83 (142)
Q Consensus 47 ~~Vvvy~~~~-Cp~C~~ak~lL~~~g---i~~~~i~id~~~ 83 (142)
..|+.|..+| ||.|.+-..-|.+.. -.+.++-|..+.
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~ 86 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADL 86 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 3466666677 999997554444321 145666666554
No 263
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=83.07 E-value=1.3 Score=31.62 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=14.2
Q ss_pred CEEEEEcCCCchHHHHHH
Q 032368 48 AVLVLGRPGCCMCHVVKT 65 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~ 65 (142)
-|+.|..+|||+|.+...
T Consensus 25 vvv~~~as~C~~c~~~~~ 42 (153)
T TIGR02540 25 SLVVNVASECGFTDQNYR 42 (153)
T ss_pred EEEEEeCCCCCchhhhHH
Confidence 368889999999986544
No 264
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=82.93 E-value=4.6 Score=28.89 Aligned_cols=63 Identities=22% Similarity=0.171 Sum_probs=38.5
Q ss_pred CEEEEEcC---CCchHHHHHHHHHhC----C-CCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEeec
Q 032368 48 AVLVLGRP---GCCMCHVVKTLLLGH----G-VNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLFGG 117 (142)
Q Consensus 48 ~Vvvy~~~---~Cp~C~~ak~lL~~~----g-i~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~IGG 117 (142)
..++|... .+|-+..+--+|.++ + -...+..+|.+.+.++..+ .|..++|++ |-||+.+|-
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~---------fgV~siPTLl~FkdGk~v~~ 106 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDR---------FGVFRFPATLVFTGGNYRGV 106 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHH---------cCCccCCEEEEEECCEEEEE
Confidence 34444443 477777776666554 3 2345777888877554443 466667765 669998865
Q ss_pred cH
Q 032368 118 LD 119 (142)
Q Consensus 118 ~d 119 (142)
..
T Consensus 107 i~ 108 (132)
T PRK11509 107 LN 108 (132)
T ss_pred Ee
Confidence 54
No 265
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.74 E-value=3 Score=34.48 Aligned_cols=38 Identities=11% Similarity=0.067 Sum_probs=25.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhC------CCCcEEEEeeCC
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGH------GVNPAVFEVADG 82 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~------gi~~~~i~id~~ 82 (142)
+...++.|+.|||++|+.....+.+. +..+++..+|..
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 34468999999999999875554443 234455566655
No 266
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=82.44 E-value=4.7 Score=29.93 Aligned_cols=18 Identities=6% Similarity=-0.088 Sum_probs=12.1
Q ss_pred CCEEEEE--cCCCchHHHHH
Q 032368 47 NAVLVLG--RPGCCMCHVVK 64 (142)
Q Consensus 47 ~~Vvvy~--~~~Cp~C~~ak 64 (142)
..++||. .+|||.|..-.
T Consensus 32 k~vvl~F~p~~~cp~C~~el 51 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTEL 51 (187)
T ss_pred CEEEEEEECCCcCCcCHHHH
Confidence 3444444 68999999643
No 267
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=81.79 E-value=1.1 Score=31.13 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.3
Q ss_pred CCceeeeEEEECCEEeeccHHHHh
Q 032368 100 GGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 100 ~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
.|..++|+++|+|+.+-|.++...
T Consensus 125 ~gi~gtPt~~v~g~~~~G~~~~~~ 148 (154)
T cd03023 125 LGITGTPAFIIGDTVIPGAVPADT 148 (154)
T ss_pred cCCCcCCeEEECCEEecCCCCHHH
Confidence 578899999999999999876544
No 268
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=80.84 E-value=2.4 Score=29.85 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=18.1
Q ss_pred CCceeeeEEEECCEEeeccHHHHh
Q 032368 100 GGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 100 ~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
.|..++|++||||+.+.|..++.+
T Consensus 132 ~~i~~tPt~~inG~~~~~~~~~~~ 155 (162)
T PF13462_consen 132 LGITGTPTFFINGKYVVGPYTIEE 155 (162)
T ss_dssp HT-SSSSEEEETTCEEETTTSHHH
T ss_pred cCCccccEEEECCEEeCCCCCHHH
Confidence 577899999999999976554433
No 269
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=78.82 E-value=6.7 Score=30.72 Aligned_cols=85 Identities=22% Similarity=0.338 Sum_probs=54.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCc---EEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh--
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNP---AVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA-- 123 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~---~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~-- 123 (142)
+|..+.++-+-|...-+.|.=+..+| .+..+....-.. -+.+.. .+.+++ +||-||++||.|-.+.+
T Consensus 163 ~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~ga-s~~F~~------n~lP~L-liYkgGeLIgNFv~va~ql 234 (273)
T KOG3171|consen 163 VVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGA-SDRFSL------NVLPTL-LIYKGGELIGNFVSVAEQL 234 (273)
T ss_pred EEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccc-hhhhcc------cCCceE-EEeeCCchhHHHHHHHHHH
Confidence 34445578888888888887777665 344444432211 123321 344444 66779999999976543
Q ss_pred --hhhcCChHHHHHhcCccC
Q 032368 124 --THISGDLVPILKEAGALW 141 (142)
Q Consensus 124 --~~~~g~L~~~L~~~g~l~ 141 (142)
-+..|.|...|..-|++.
T Consensus 235 gedffa~dle~FL~e~gllp 254 (273)
T KOG3171|consen 235 GEDFFAGDLESFLNEYGLLP 254 (273)
T ss_pred hhhhhhhhHHHHHHHcCCCc
Confidence 455788999998888763
No 270
>PTZ00256 glutathione peroxidase; Provisional
Probab=78.47 E-value=2.1 Score=31.72 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=13.4
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 032368 50 LVLGRPGCCMCHVVKTLLL 68 (142)
Q Consensus 50 vvy~~~~Cp~C~~ak~lL~ 68 (142)
+++..+|||.|.+-...|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 4568899999997443333
No 271
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=78.41 E-value=14 Score=26.04 Aligned_cols=15 Identities=13% Similarity=0.055 Sum_probs=9.0
Q ss_pred EEEEEc-CCCchHHHH
Q 032368 49 VLVLGR-PGCCMCHVV 63 (142)
Q Consensus 49 Vvvy~~-~~Cp~C~~a 63 (142)
|+.|.. .+||.|...
T Consensus 34 ll~f~~~~~~p~C~~~ 49 (154)
T PRK09437 34 LVYFYPKAMTPGCTVQ 49 (154)
T ss_pred EEEEECCCCCCchHHH
Confidence 444443 479999753
No 272
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=77.29 E-value=7 Score=30.54 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=43.2
Q ss_pred CCCccchHHHHHHHHHhcCCCEEEEEcC-----CCchHHHHHHHHHhC------CCCcEEEEeeCCC
Q 032368 28 GVTEEADTAAKSVEKMLVENAVLVLGRP-----GCCMCHVVKTLLLGH------GVNPAVFEVADGD 83 (142)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~Vvvy~~~-----~Cp~C~~ak~lL~~~------gi~~~~i~id~~~ 83 (142)
...+.+..+++.++++-..-.|.+|..+ .-++-..++.+|+++ ++.+++++-+..+
T Consensus 8 k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~ 74 (271)
T PF09822_consen 8 KRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENP 74 (271)
T ss_pred CCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCCh
Confidence 4457889999999998888899999987 456778899999987 4556666554444
No 273
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=76.85 E-value=2.2 Score=31.05 Aligned_cols=59 Identities=22% Similarity=0.364 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCCcEEEE--eeCCC-CHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 62 VVKTLLLGHGVNPAVFE--VADGD-EAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 62 ~ak~lL~~~gi~~~~i~--id~~~-~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
.+.+++.+.|++...+. ++... ...+.+..+.. ...|..++|.++|||+.+=|.+.+-.
T Consensus 125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a---~~~gi~gvPtfvv~g~~~~G~~~l~~ 186 (192)
T cd03022 125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEA---IARGVFGVPTFVVDGEMFWGQDRLDM 186 (192)
T ss_pred HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHH---HHcCCCcCCeEEECCeeecccccHHH
Confidence 45677788887642111 11111 11222222211 12588999999999999988886643
No 274
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=76.21 E-value=9.8 Score=29.24 Aligned_cols=96 Identities=20% Similarity=0.317 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCC-CEEEEEcCCCchHHHHH---HHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--E
Q 032368 36 AAKSVEKMLVEN-AVLVLGRPGCCMCHVVK---TLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--F 109 (142)
Q Consensus 36 ~~~~v~~~~~~~-~Vvvy~~~~Cp~C~~ak---~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--f 109 (142)
-+++++...++. -|.-|+.+..--|+-+- ..|....++-.++.|+....+=+...| +...+|.| |
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL---------~IkVLP~v~l~ 144 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKL---------NIKVLPTVALF 144 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeee---------eeeEeeeEEEE
Confidence 455666654444 46678888766666554 445555677778888776553222222 56677776 7
Q ss_pred ECCE---EeeccHHHHh--hhhcCChHHHHHhcCcc
Q 032368 110 VGGK---LFGGLDRVMA--THISGDLVPILKEAGAL 140 (142)
Q Consensus 110 I~G~---~IGG~del~~--~~~~g~L~~~L~~~g~l 140 (142)
.+|+ +|-||++|-. -+....|+..|.++|++
T Consensus 145 k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 145 KNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred EcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 7886 4677777632 22333577777777764
No 275
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=75.21 E-value=3.3 Score=32.41 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=16.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHH
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLL 67 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL 67 (142)
...-|+.|..+|||.|..-...|
T Consensus 99 GK~vvl~FwAswCp~c~~e~p~L 121 (236)
T PLN02399 99 GKVLLIVNVASKCGLTSSNYSEL 121 (236)
T ss_pred CCeEEEEEEcCCCcchHHHHHHH
Confidence 34468889999999998644333
No 276
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=74.53 E-value=8.9 Score=28.33 Aligned_cols=74 Identities=19% Similarity=0.246 Sum_probs=48.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCc--------------------eeeeEE
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGI--------------------IQFPAV 108 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~--------------------~tvP~v 108 (142)
|++=|+|.-+.-+.+-+.|+++|++|+..-++.+..++...++.+-..+ .|. +.+|+|
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~--~g~~viIAgAGgAAHLPGmvAa~T~lPVi 84 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEE--RGVKVIIAGAGGAAHLPGMVAAKTPLPVI 84 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHH--CCCeEEEecCcchhhcchhhhhcCCCCeE
Confidence 4555566678899999999999999998888888765433333221110 111 345665
Q ss_pred --EECCEEeeccHHHHhh
Q 032368 109 --FVGGKLFGGLDRVMAT 124 (142)
Q Consensus 109 --fI~G~~IGG~del~~~ 124 (142)
-|..+.++|.|.|...
T Consensus 85 GVPv~s~~L~GlDSL~Si 102 (162)
T COG0041 85 GVPVQSKALSGLDSLLSI 102 (162)
T ss_pred eccCccccccchHHHHHH
Confidence 3456777888876553
No 277
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=74.47 E-value=11 Score=27.13 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=37.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCC---c-EEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEe
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVN---P-AVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLF 115 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~-~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I 115 (142)
-|+=|+.+|-|-|-+.-.+|.+...+ | .++-+|.++-+.+.+.+ ++ +...++ ..|.+++|+
T Consensus 26 vViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~-~l-----~~p~tv-mfFfn~kHm 90 (142)
T KOG3414|consen 26 VVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMY-EL-----YDPPTV-MFFFNNKHM 90 (142)
T ss_pred EEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhh-cc-----cCCceE-EEEEcCceE
Confidence 46668999999999999999875422 3 33334444333332322 22 444554 568888885
No 278
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=72.37 E-value=8.9 Score=28.84 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=12.0
Q ss_pred CCEEE--EEcCCCchHHHHH
Q 032368 47 NAVLV--LGRPGCCMCHVVK 64 (142)
Q Consensus 47 ~~Vvv--y~~~~Cp~C~~ak 64 (142)
..+++ |..+|||.|..-.
T Consensus 26 k~vvlf~~pa~~cp~C~~el 45 (203)
T cd03016 26 SWGILFSHPADFTPVCTTEL 45 (203)
T ss_pred CEEEEEEecCCCCCcCHHHH
Confidence 34554 5557999999643
No 279
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=72.02 E-value=15 Score=25.86 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHhc-CCCEEEEEcCCCchHH------------HHHHHHHhCCCCcEEEEeeC
Q 032368 31 EEADTAAKSVEKMLV-ENAVLVLGRPGCCMCH------------VVKTLLLGHGVNPAVFEVAD 81 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~-~~~Vvvy~~~~Cp~C~------------~ak~lL~~~gi~~~~i~id~ 81 (142)
.+..++.+.++++.+ ...|++.|......+. ...++|++++++|..+.+-.
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 356677888887754 4456666655555555 77999999999997665544
No 280
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=70.45 E-value=11 Score=26.52 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=31.9
Q ss_pred CCchHH-----------HHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEe
Q 032368 56 GCCMCH-----------VVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLF 115 (142)
Q Consensus 56 ~Cp~C~-----------~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I 115 (142)
.|+-|. +++..|..+|++..+.++...++ ++... .-+-|.|.|||+.|
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~-----~~~~~-------~~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE-----EFARQ-------PLESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH-----HHhhc-------ccCCCeeeECCEeh
Confidence 677776 45667888999876666555443 22211 14679999999976
No 281
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=69.73 E-value=2.9 Score=29.96 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=16.2
Q ss_pred CCceeeeEEEECCEEeeccH
Q 032368 100 GGIIQFPAVFVGGKLFGGLD 119 (142)
Q Consensus 100 ~g~~tvP~vfI~G~~IGG~d 119 (142)
.|..++|+++|||+.+-+..
T Consensus 139 ~gi~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 139 YKITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred cCCCCCCeEEECCEEEEChh
Confidence 57889999999999864444
No 282
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=69.44 E-value=2.1 Score=32.25 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=30.8
Q ss_pred HHHHHHHHhCCCCcEEEE--eeCCC-CHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHH
Q 032368 61 HVVKTLLLGHGVNPAVFE--VADGD-EAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDR 120 (142)
Q Consensus 61 ~~ak~lL~~~gi~~~~i~--id~~~-~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~de 120 (142)
...++++.+.|++-+.++ ++... ...+.+..+.. ...|..++|.++|||+++-+...
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a---~~~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAA---ADLQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHH---HHcCCCCCCEEEECCEEEEcccc
Confidence 467778888888742111 11111 01111111111 12588999999999999655443
No 283
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=69.42 E-value=4.7 Score=29.20 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=22.8
Q ss_pred CEEEEEcCCCchHHHHHHH----HHhC-CCCcEEEEee
Q 032368 48 AVLVLGRPGCCMCHVVKTL----LLGH-GVNPAVFEVA 80 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~l----L~~~-gi~~~~i~id 80 (142)
.|++|+...||||-.+... ..++ +++++..-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 4889999999999866544 4445 6666555554
No 284
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=69.33 E-value=26 Score=22.19 Aligned_cols=56 Identities=16% Similarity=0.033 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV 110 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI 110 (142)
..+|.+.+-+....=...++++++.+.+...+.++.... ..+.+. .+...+|.+++
T Consensus 33 ~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~-----~~i~~iP~~~l 88 (95)
T PF13905_consen 33 KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNN----SELLKK-----YGINGIPTLVL 88 (95)
T ss_dssp TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHH----HHHHHH-----TT-TSSSEEEE
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchH----HHHHHH-----CCCCcCCEEEE
Confidence 456666666666777899999999988766555444332 344443 47778999876
No 285
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=69.29 E-value=28 Score=28.81 Aligned_cols=90 Identities=6% Similarity=-0.027 Sum_probs=62.3
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEE----------EeeCCCCHHHHHHHhhhhhccCC
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVF----------EVADGDEAAVLDELSRIDVENGG 100 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i----------~id~~~~~~~~~~L~~~~~~~~~ 100 (142)
.-+..+.+++.++++..-+.||+-+.|.-...+.++.+.+.|||-.. .+...++ +-.++..+. +..
T Consensus 47 ~dsf~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~--l~~Ai~diI--~~~ 122 (372)
T cd06387 47 SNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPA--LKGAILSLL--AHY 122 (372)
T ss_pred CChHHHHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChh--HHHHHHHHH--Hhc
Confidence 35667889999999999999999999999999999999999997542 2233333 233444333 236
Q ss_pred CceeeeEEEECCEEeeccHHHHhh
Q 032368 101 GIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 101 g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+|+.|=.||-+..-++...++.++
T Consensus 123 ~Wr~~~~iYd~d~gl~~Lq~L~~~ 146 (372)
T cd06387 123 KWEKFVYLYDTERGFSILQAIMEA 146 (372)
T ss_pred CCCEEEEEecCchhHHHHHHHHHh
Confidence 888887777555545555554443
No 286
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=69.04 E-value=42 Score=27.52 Aligned_cols=87 Identities=10% Similarity=0.085 Sum_probs=61.4
Q ss_pred cchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEE----------EEeeCCCC--HHHHHHHhhhhhccC
Q 032368 32 EADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAV----------FEVADGDE--AAVLDELSRIDVENG 99 (142)
Q Consensus 32 ~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~----------i~id~~~~--~~~~~~L~~~~~~~~ 99 (142)
-+..+.+.+.++++..-+.||+-..+..+..+..+.++.+||+-. +.+...++ ..+.+.++ .
T Consensus 48 dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~~i~------~ 121 (371)
T cd06388 48 NSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLSLLD------H 121 (371)
T ss_pred ChhHHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHHHHH------h
Confidence 566788999999999999999999999999999999999999632 12222222 22222222 2
Q ss_pred CCceeeeEEEECCEEeeccHHHHhh
Q 032368 100 GGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 100 ~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
.+++++=.+|-.+.-++..+.+.+.
T Consensus 122 ~~wk~vaiiYd~~~~~~~lq~l~~~ 146 (371)
T cd06388 122 YEWNRFVFLYDTDRGYSILQAIMEK 146 (371)
T ss_pred cCceEEEEEecCCccHHHHHHHHHh
Confidence 5889997788656655666665554
No 287
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=68.52 E-value=64 Score=26.42 Aligned_cols=91 Identities=11% Similarity=0.136 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEE-----------------------eeCCCCHHH
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFE-----------------------VADGDEAAV 87 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~-----------------------id~~~~~~~ 87 (142)
.-+..+...++++++..-+.||+-..|+.|..+..++++.+||+-... +...++...
T Consensus 46 ~d~~~a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is~~~~~~~~~~~~~~~~~~~~~~~~~f~~rp~~~~ 125 (363)
T cd06381 46 NNHFDAVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLFIQRGYGGSPRTACGLNPSPRGQQYTLALRPPVRL 125 (363)
T ss_pred CChHHHHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEEeecCcCCCcccccccCCCcccceeEEEEeccHHH
Confidence 456677888888998877889999999999999999999999863211 111122223
Q ss_pred HHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 88 LDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 88 ~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
...+..+. ...++..+=.++.+.....|..++.+
T Consensus 126 ~~ai~~lv--~~~~wkkvavly~~d~g~~~l~~~~~ 159 (363)
T cd06381 126 NDVMLRLV--TEWRWQKFVYFYDNDYDIRGLQEFLD 159 (363)
T ss_pred HHHHHHHH--HhCCCeEEEEEEECCchHHHHHHHHH
Confidence 33444332 12578888777777764444454444
No 288
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=68.19 E-value=34 Score=23.01 Aligned_cols=69 Identities=13% Similarity=0.062 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeee-EEEEC--C
Q 032368 36 AAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFP-AVFVG--G 112 (142)
Q Consensus 36 ~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP-~vfI~--G 112 (142)
....+.++.+...+.+++-+....-..+++++++++++|..+.+|... . +.+. .+...+| .++|+ |
T Consensus 43 ~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~----~~~~-----~~v~~~P~~~~ld~~G 111 (127)
T cd03010 43 EHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG--R----VGID-----LGVYGVPETFLIDGDG 111 (127)
T ss_pred HHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc--h----HHHh-----cCCCCCCeEEEECCCc
Confidence 344445544444466666655455667889999999987655555432 2 2222 3566789 66674 5
Q ss_pred EEe
Q 032368 113 KLF 115 (142)
Q Consensus 113 ~~I 115 (142)
+.+
T Consensus 112 ~v~ 114 (127)
T cd03010 112 IIR 114 (127)
T ss_pred eEE
Confidence 544
No 289
>PRK13190 putative peroxiredoxin; Provisional
Probab=67.80 E-value=14 Score=27.77 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=13.9
Q ss_pred CCEEE--EEcCCCchHHHHHHHHH
Q 032368 47 NAVLV--LGRPGCCMCHVVKTLLL 68 (142)
Q Consensus 47 ~~Vvv--y~~~~Cp~C~~ak~lL~ 68 (142)
..+++ |..+|||.|..-..-|.
T Consensus 28 k~vvL~~~p~~~cp~C~~El~~l~ 51 (202)
T PRK13190 28 KWVLLFSHPADFTPVCTTEFIAFS 51 (202)
T ss_pred CEEEEEEEcCCCCCCCHHHHHHHH
Confidence 34554 56789999996543333
No 290
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=67.11 E-value=29 Score=25.23 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=26.1
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhCCCC
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGHGVN 73 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~ 73 (142)
.+.+|++|-.++|..+..+-..|...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 55789999999999999999999999976
No 291
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=66.93 E-value=4.2 Score=32.74 Aligned_cols=74 Identities=9% Similarity=0.169 Sum_probs=54.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhhhc
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHIS 127 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~~~ 127 (142)
.++|--+..-.+++++-.+.+.|++|+.++|+.......-..+-++ +....||++.-|...|-..+.+.+..+.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrl-----Np~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRL-----NPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheec-----CCCCCCceEecCCeecccHHHHHHHHHH
Confidence 7889999988999999999999999998888776542222344444 3456898776566667788887776554
No 292
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=65.04 E-value=4.2 Score=27.65 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=13.9
Q ss_pred CEEEEEcCCCchHHH
Q 032368 48 AVLVLGRPGCCMCHV 62 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ 62 (142)
+|.||+.+-||+|++
T Consensus 2 ~v~vyyESlCPd~~~ 16 (108)
T PF03227_consen 2 NVEVYYESLCPDCRR 16 (108)
T ss_pred EEEEEEEecCHhHHH
Confidence 589999999999997
No 293
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=64.85 E-value=17 Score=27.18 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=11.0
Q ss_pred CEEEE-E-cCCCchHHHH
Q 032368 48 AVLVL-G-RPGCCMCHVV 63 (142)
Q Consensus 48 ~Vvvy-~-~~~Cp~C~~a 63 (142)
.+++| . ..|||.|..-
T Consensus 33 ~vvL~F~P~~~~p~C~~e 50 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTE 50 (187)
T ss_pred eEEEEEECCCCCCcCHHH
Confidence 44444 4 6899999963
No 294
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=63.71 E-value=37 Score=26.45 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=52.0
Q ss_pred cchHHHHHHHHHhcCC-CEEEEEc------CCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCcee
Q 032368 32 EADTAAKSVEKMLVEN-AVLVLGR------PGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQ 104 (142)
Q Consensus 32 ~~~~~~~~v~~~~~~~-~Vvvy~~------~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~t 104 (142)
...-+...+..-+... +=+.|.= .+-+|-.++++.|.++|.....+++...+...+...|.+
T Consensus 16 ~~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~----------- 84 (224)
T COG3340 16 VLEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMK----------- 84 (224)
T ss_pred hhhhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhh-----------
Confidence 3344556666655443 3334432 357899999999999999987777766665555454533
Q ss_pred eeEEEECCEEeeccHHHHhhhhcCChH
Q 032368 105 FPAVFVGGKLFGGLDRVMATHISGDLV 131 (142)
Q Consensus 105 vP~vfI~G~~IGG~del~~~~~~g~L~ 131 (142)
.=.|+|+|-- .|+=++.+.+-|.+.
T Consensus 85 ~d~IyVgGGN--TF~LL~~lke~gld~ 109 (224)
T COG3340 85 ADIIYVGGGN--TFNLLQELKETGLDD 109 (224)
T ss_pred ccEEEECCch--HHHHHHHHHHhCcHH
Confidence 2356666532 344455555555443
No 295
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=63.50 E-value=48 Score=23.96 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=36.5
Q ss_pred HHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeee-EEEEC--CEEe
Q 032368 39 SVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFP-AVFVG--GKLF 115 (142)
Q Consensus 39 ~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP-~vfI~--G~~I 115 (142)
.++++.+. .+.++.-+....-...++++++++++|..+..|.... +... .+...+| .++|| |+.+
T Consensus 84 ~l~~l~~~-~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~--~~~~---------~~v~~~P~~~~id~~G~i~ 151 (173)
T TIGR00385 84 YLNELAKD-GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGK--LGLD---------LGVYGAPETFLVDGNGVIL 151 (173)
T ss_pred HHHHHHHc-CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCc--hHHh---------cCCeeCCeEEEEcCCceEE
Confidence 34444443 3444444443344566789999999886555554432 1122 3566789 56774 6643
No 296
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=62.20 E-value=16 Score=24.34 Aligned_cols=38 Identities=8% Similarity=-0.055 Sum_probs=25.4
Q ss_pred chHHHHHHHHHh----cCCCEEEEEcCCCchHHHHHHHHHhCC
Q 032368 33 ADTAAKSVEKML----VENAVLVLGRPGCCMCHVVKTLLLGHG 71 (142)
Q Consensus 33 ~~~~~~~v~~~~----~~~~Vvvy~~~~Cp~C~~ak~lL~~~g 71 (142)
+.+.++.++++. +.-.+.+|+.+. ++|..++++|++..
T Consensus 3 ~~~~~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a 44 (94)
T cd02974 3 DANLKQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIA 44 (94)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHH
Confidence 344555555544 333455677766 99999999998863
No 297
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=61.96 E-value=1.6 Score=38.41 Aligned_cols=26 Identities=8% Similarity=0.194 Sum_probs=20.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCC
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHG 71 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~g 71 (142)
+..+|-|..+||++|++-...++++.
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A 83 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFA 83 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHH
Confidence 45688888999999998877776654
No 298
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=61.19 E-value=16 Score=22.64 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=13.6
Q ss_pred EEECCEEeeccHHHHhh
Q 032368 108 VFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 108 vfI~G~~IGG~del~~~ 124 (142)
||+||..+|=.++-.++
T Consensus 1 VFlNG~~iG~~~~p~~l 17 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEEL 17 (63)
T ss_dssp EEETTEEEEEESSHHHH
T ss_pred CEECCEEEEEEcCHHHH
Confidence 79999999988765443
No 299
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=60.39 E-value=27 Score=25.59 Aligned_cols=49 Identities=14% Similarity=0.261 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCc-hHHH-------HHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhh
Q 032368 46 ENAVLVLGRPGCC-MCHV-------VKTLLLGHGVNPAVFEVADGDEAAVLDELSRI 94 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp-~C~~-------ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~ 94 (142)
...++.|.-+.|| -|.. +.+-|.+.+.+++++-|..+++.+-.+.|++.
T Consensus 53 k~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 53 KWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp SEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 3357778888997 5663 33444444556666666665542222344443
No 300
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=60.21 E-value=74 Score=24.97 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=47.2
Q ss_pred CCCCccchHHHHHHHHHhcCC--CEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhh
Q 032368 27 GGVTEEADTAAKSVEKMLVEN--AVLVLGRPG--CCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRI 94 (142)
Q Consensus 27 ~~~~~~~~~~~~~v~~~~~~~--~Vvvy~~~~--Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~ 94 (142)
++..+-.+..+..+.+++.+. .++||..|+ -|--.+++.+|.+-+++. +-|...+..+.+++|++.
T Consensus 39 sgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~Pa--iiigDaPg~~vkdeleeq 108 (277)
T COG1927 39 SGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPA--IIIGDAPGLKVKDELEEQ 108 (277)
T ss_pred cccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCE--EEecCCccchhHHHHHhc
Confidence 344455555666777777543 699999975 688899999999999985 344555556677888774
No 301
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=60.17 E-value=53 Score=26.79 Aligned_cols=89 Identities=7% Similarity=-0.010 Sum_probs=58.9
Q ss_pred cchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEE----------EeeCCCCHHHHHHHhhhhhccCCC
Q 032368 32 EADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVF----------EVADGDEAAVLDELSRIDVENGGG 101 (142)
Q Consensus 32 ~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i----------~id~~~~~~~~~~L~~~~~~~~~g 101 (142)
-+..+.+.+.++++..-+.||+-..+.-+..+..+.++++||+-.. .+...++ +...+..++ +..+
T Consensus 42 dsf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~--~~~ai~d~i--~~~~ 117 (370)
T cd06389 42 NSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPD--LKGALLSLI--EYYQ 117 (370)
T ss_pred chHHHHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecch--hhhHHHHHH--HhcC
Confidence 4567789999999999999999999999999999999999996432 1222222 122222221 1258
Q ss_pred ceeeeEEEECCEEeeccHHHHhh
Q 032368 102 IIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 102 ~~tvP~vfI~G~~IGG~del~~~ 124 (142)
+++|=.++-+..-.+..+++.+.
T Consensus 118 wk~vailYdsd~gl~~lq~l~~~ 140 (370)
T cd06389 118 WDKFAYLYDSDRGLSTLQAVLDS 140 (370)
T ss_pred CcEEEEEecCchHHHHHHHHHHh
Confidence 89997777544334444444443
No 302
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=60.06 E-value=6.4 Score=29.65 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.6
Q ss_pred CCCEEEEEcCCCchHHHHHH
Q 032368 46 ENAVLVLGRPGCCMCHVVKT 65 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~ 65 (142)
...|+.|..-.||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 34599999999999998654
No 303
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=59.18 E-value=6.1 Score=28.72 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=16.6
Q ss_pred CEEEEEcCCCchHHHHHHHHH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLL 68 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~ 68 (142)
+|.+|+.+.||+|-.+...|.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 488999999999986655544
No 304
>PRK13599 putative peroxiredoxin; Provisional
Probab=59.11 E-value=22 Score=27.22 Aligned_cols=13 Identities=8% Similarity=-0.092 Sum_probs=9.3
Q ss_pred EEEcCCCchHHHH
Q 032368 51 VLGRPGCCMCHVV 63 (142)
Q Consensus 51 vy~~~~Cp~C~~a 63 (142)
.|-.+|||.|..-
T Consensus 35 ~~pa~~tpvCt~E 47 (215)
T PRK13599 35 SHPADFTPVCTTE 47 (215)
T ss_pred EeCCCCCCcCHHH
Confidence 3445699999963
No 305
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=59.00 E-value=19 Score=28.61 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=14.3
Q ss_pred HHHhcCCCEEEEE--cCCCchHHHH
Q 032368 41 EKMLVENAVLVLG--RPGCCMCHVV 63 (142)
Q Consensus 41 ~~~~~~~~Vvvy~--~~~Cp~C~~a 63 (142)
.+......|++|. .+|||.|..-
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~E 117 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSE 117 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHH
Confidence 3333444566664 4799999963
No 306
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=58.01 E-value=29 Score=24.70 Aligned_cols=64 Identities=17% Similarity=0.334 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhhhhcCChHHHHHh
Q 032368 59 MCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMATHISGDLVPILKE 136 (142)
Q Consensus 59 ~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~~~~g~L~~~L~~ 136 (142)
|-++.++.|.++|+.+..+++....+.+..+.+. +.-.||+.|= .-..+.+..++-.|.+.|++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~-----------~ad~I~~~GG---~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDADILEAIR-----------EADAIFLGGG---DTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHH-----------HSSEEEE--S----HHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChHHHHHHHH-----------hCCEEEECCC---CHHHHHHHHHhCCHHHHHHH
Confidence 3467899999999875555544443343334443 3456777652 22233444444456666654
No 307
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.67 E-value=15 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=14.6
Q ss_pred EEEEEcCCCchHHHHHHHH
Q 032368 49 VLVLGRPGCCMCHVVKTLL 67 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL 67 (142)
|.+|+..-||||--+..-|
T Consensus 1 I~~~~D~~cP~cyl~~~~l 19 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRL 19 (201)
T ss_pred CeEEecCcCccHHHHHHHH
Confidence 5689999999999555444
No 308
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=57.32 E-value=94 Score=25.24 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=60.8
Q ss_pred ccccCcccCCCccccCCCCCCCccchHHHHHHHHHhcCC-CEEEEEcCCCchHHHHHHHHHhCCCCc--EEEEeeCCCCH
Q 032368 9 TYIHGPAVAAGNTSSARGGGVTEEADTAAKSVEKMLVEN-AVLVLGRPGCCMCHVVKTLLLGHGVNP--AVFEVADGDEA 85 (142)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~Vvvy~~~~Cp~C~~ak~lL~~~gi~~--~~i~id~~~~~ 85 (142)
+...||+-.-|.|+|. .+....++.+..-. .|.+|+ +.|.--+.+-......+++. -+.-.|...+.
T Consensus 47 ~f~l~~~n~dGtCKSa---------~~~~sDLe~l~~~t~~IR~Y~-sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~ 116 (305)
T COG5309 47 AFTLGPYNDDGTCKSA---------DQVASDLELLASYTHSIRTYG-SDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA 116 (305)
T ss_pred ceeccccCCCCCCcCH---------HHHHhHHHHhccCCceEEEee-ccchhhhhhHHHHHhcCceEEEEEeeccchhhh
Confidence 3445566666666654 34556666666543 799999 78888888888888888663 22333443332
Q ss_pred HHHHHHhhhhhccCCCceeeeEEEECCEEeecc
Q 032368 86 AVLDELSRIDVENGGGIIQFPAVFVGGKLFGGL 118 (142)
Q Consensus 86 ~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~ 118 (142)
.-...+..+. ..+++..|-.|-||.+.+-+-
T Consensus 117 ~~~til~ay~--~~~~~d~v~~v~VGnEal~r~ 147 (305)
T COG5309 117 VEKTILSAYL--PYNGWDDVTTVTVGNEALNRN 147 (305)
T ss_pred HHHHHHHHHh--ccCCCCceEEEEechhhhhcC
Confidence 1112222221 247889999999999987554
No 309
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=56.73 E-value=39 Score=25.04 Aligned_cols=78 Identities=12% Similarity=0.069 Sum_probs=40.4
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCC------------cEEEEeeCCCCHHHHHHHhhhhhcc
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVN------------PAVFEVADGDEAAVLDELSRIDVEN 98 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~------------~~~i~id~~~~~~~~~~L~~~~~~~ 98 (142)
.+-.++.+.++++.. ..|.+=..|.+..=..|+++|+.++++ |...+|-........+.+++.
T Consensus 45 ~lypdv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~~Hf~~i~~~---- 119 (169)
T PF12689_consen 45 SLYPDVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKTTHFRRIHRK---- 119 (169)
T ss_dssp ---TTHHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HHHHHHHHHHH----
T ss_pred EeCcCHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchHHHHHHHHHh----
Confidence 455667777777665 344444444444449999999999988 344555444333333444443
Q ss_pred CCCceeeeEEEECCEE
Q 032368 99 GGGIIQFPAVFVGGKL 114 (142)
Q Consensus 99 ~~g~~tvP~vfI~G~~ 114 (142)
+|.+.==.+|+|++.
T Consensus 120 -tgI~y~eMlFFDDe~ 134 (169)
T PF12689_consen 120 -TGIPYEEMLFFDDES 134 (169)
T ss_dssp -H---GGGEEEEES-H
T ss_pred -cCCChhHEEEecCch
Confidence 565555588998875
No 310
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=55.74 E-value=26 Score=25.78 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=28.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCH
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEA 85 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~ 85 (142)
|++=+++.=|.++++...|+++|++|+..-...+...
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp 39 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTP 39 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCH
Confidence 3444556679999999999999999887766666653
No 311
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.54 E-value=6.6 Score=30.63 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=17.7
Q ss_pred CEEEEEcCCCchHHHH----HHHHHhCC
Q 032368 48 AVLVLGRPGCCMCHVV----KTLLLGHG 71 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~a----k~lL~~~g 71 (142)
+|.+|+-.-||+|--- ++++.+++
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcC
Confidence 6888999999999844 44555555
No 312
>PRK13189 peroxiredoxin; Provisional
Probab=54.95 E-value=31 Score=26.42 Aligned_cols=18 Identities=6% Similarity=-0.046 Sum_probs=11.9
Q ss_pred CCCEEE--EEcCCCchHHHH
Q 032368 46 ENAVLV--LGRPGCCMCHVV 63 (142)
Q Consensus 46 ~~~Vvv--y~~~~Cp~C~~a 63 (142)
...+++ |-.+|||.|..-
T Consensus 35 Gk~vvL~f~pa~fcpvC~tE 54 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTE 54 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHH
Confidence 333554 456799999964
No 313
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=54.24 E-value=12 Score=26.06 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCchHHHHHHHHHhCCC---CcEEEEeeCCC-CHHHHHHHhhhhhccCCCceeeeEEEECCE
Q 032368 56 GCCMCHVVKTLLLGHGV---NPAVFEVADGD-EAAVLDELSRIDVENGGGIIQFPAVFVGGK 113 (142)
Q Consensus 56 ~Cp~C~~ak~lL~~~gi---~~~~i~id~~~-~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~ 113 (142)
.||+|..+.-+|..+-. ..++..|+-.. -..+.+.+- -...+.|++..++.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llG-------E~~QslPvLVL~~~ 77 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLG-------EANQSLPVLVLADG 77 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhC-------hhccCCCEEEeCCC
Confidence 49999999999988632 12233333322 123333332 23568999988764
No 314
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=53.59 E-value=28 Score=26.45 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=34.3
Q ss_pred chHHHHHHHHHhcCC-CEEEEEcCCCc-hHHH----HHHHHHhCC----CCcEEEEeeCCCCHHHHHHHhhh
Q 032368 33 ADTAAKSVEKMLVEN-AVLVLGRPGCC-MCHV----VKTLLLGHG----VNPAVFEVADGDEAAVLDELSRI 94 (142)
Q Consensus 33 ~~~~~~~v~~~~~~~-~Vvvy~~~~Cp-~C~~----ak~lL~~~g----i~~~~i~id~~~~~~~~~~L~~~ 94 (142)
.++.+.......... .++.|+-+.|| -|.. .+.++++++ .++..+.|..|++.+..+.|++.
T Consensus 54 d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 54 DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 344444444444444 46666668887 5653 344444444 55666666666654444666665
No 315
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=53.33 E-value=16 Score=27.41 Aligned_cols=113 Identities=19% Similarity=0.213 Sum_probs=59.9
Q ss_pred CccCCCCCccccCcccCCCccccCCCCCCCccchHHHHHHHHHhcCCCEEEEEcC---------CCchHHHHHHHHHhCC
Q 032368 1 MQEAIPYRTYIHGPAVAAGNTSSARGGGVTEEADTAAKSVEKMLVENAVLVLGRP---------GCCMCHVVKTLLLGHG 71 (142)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vvvy~~~---------~Cp~C~~ak~lL~~~g 71 (142)
|...||.-.|- |- |--+++...+ +.+-.-....+-.+|+.+ -||.|..-=+.-+++.
T Consensus 1 ~~~~lP~FrYh--Pd--------p~~tg~~~~~----~~~C~cCgk~~~~~Y~~~~Y~~~dv~~lCPwCIAdG~AA~kfd 66 (176)
T PF03691_consen 1 MSKPLPKFRYH--PD--------PLATGAFEES----EVVCDCCGKARGYYYTGPFYSEEDVEYLCPWCIADGSAAKKFD 66 (176)
T ss_pred CCCCCCCcccC--cC--------hhhcCCeEeC----CCCcCCCCCCceeEecCCceecCCccccCHhHhcCcHhHHhcC
Confidence 66777877776 32 2222322222 233444455566666664 4999997666666665
Q ss_pred CCcE-EEEeeCC-CCHHHHHHHhhhhhccCCCceee-----------eEEEECCEEeeccHHHHhhhhcCChHHHHHh
Q 032368 72 VNPA-VFEVADG-DEAAVLDELSRIDVENGGGIIQF-----------PAVFVGGKLFGGLDRVMATHISGDLVPILKE 136 (142)
Q Consensus 72 i~~~-~i~id~~-~~~~~~~~L~~~~~~~~~g~~tv-----------P~vfI~G~~IGG~del~~~~~~g~L~~~L~~ 136 (142)
-.|. ..+++.. .+.+..++|-..+ .|..+. +.-|+|-. |.+||.++ .+++.+++++
T Consensus 67 g~F~d~~~~~~~~~~~~~~~El~~RT----PGy~sWQqe~Wl~hC~D~CaFlG~v---g~~El~~~--~~~~~~~~~~ 135 (176)
T PF03691_consen 67 GEFQDDADLEGVGIDPEKLEELFHRT----PGYSSWQQEYWLAHCDDYCAFLGYV---GWEELKAM--PEELEEVLED 135 (176)
T ss_pred eEeecchhcccccCCHHHHHHHHhcC----CCCcccccchhhhhcCCHHHhcCCC---CHHHHHHH--HHHHHHHHHH
Confidence 5542 2333332 3455556665432 344444 23344433 67777777 3456665544
No 316
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=53.22 E-value=12 Score=27.06 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHH----hCCCCcE
Q 032368 49 VLVLGRPGCCMCHVVKTLLL----GHGVNPA 75 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~----~~gi~~~ 75 (142)
|.+|+...||||--.+..|. +++++++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~ 31 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVR 31 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeE
Confidence 46899999999997665555 4455544
No 317
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.95 E-value=11 Score=27.65 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=16.9
Q ss_pred CCceeeeEEEECCEE-eeccHHH
Q 032368 100 GGIIQFPAVFVGGKL-FGGLDRV 121 (142)
Q Consensus 100 ~g~~tvP~vfI~G~~-IGG~del 121 (142)
.|..++|.++|||++ +.|....
T Consensus 171 ~gv~G~Pt~vv~g~~~~~G~~~~ 193 (201)
T cd03024 171 LGISGVPFFVFNGKYAVSGAQPP 193 (201)
T ss_pred CCCCcCCEEEECCeEeecCCCCH
Confidence 578899999999884 5666543
No 318
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=51.65 E-value=76 Score=21.74 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCC-EEEEEc-C----CCchHHH------HHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCce
Q 032368 36 AAKSVEKMLVENA-VLVLGR-P----GCCMCHV------VKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGII 103 (142)
Q Consensus 36 ~~~~v~~~~~~~~-Vvvy~~-~----~Cp~C~~------ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~ 103 (142)
.++.++...++.+ +.||-. + ||.+|+. +.++|++ .|-..-.|...... .++... -+..
T Consensus 6 ~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg--~~la~~-----l~~~ 75 (116)
T cd02991 6 YSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEG--YRVSQA-----LRER 75 (116)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHH--HHHHHH-----hCCC
Confidence 4566666666554 555554 3 5788873 4566654 34444455543321 223333 2566
Q ss_pred eeeEEEE
Q 032368 104 QFPAVFV 110 (142)
Q Consensus 104 tvP~vfI 110 (142)
++|.+.+
T Consensus 76 ~~P~~~~ 82 (116)
T cd02991 76 TYPFLAM 82 (116)
T ss_pred CCCEEEE
Confidence 8888744
No 319
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=51.52 E-value=16 Score=27.31 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=14.4
Q ss_pred cCCCEEEEEcCCCchHHHH
Q 032368 45 VENAVLVLGRPGCCMCHVV 63 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~a 63 (142)
...-+++|..+||++|...
T Consensus 25 GKvvLVvf~AS~C~~~~q~ 43 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQY 43 (183)
T ss_pred CCEEEEEEEeCCCCCcHHH
Confidence 3445788889999999743
No 320
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=50.93 E-value=53 Score=29.70 Aligned_cols=68 Identities=24% Similarity=0.440 Sum_probs=34.4
Q ss_pred HHHHhcCC-CEEE-EEcCCCchHHH----------HHHHHHhCCCCcEEEEeeCCC--C--HHHHHHHhhhhhccCCCce
Q 032368 40 VEKMLVEN-AVLV-LGRPGCCMCHV----------VKTLLLGHGVNPAVFEVADGD--E--AAVLDELSRIDVENGGGII 103 (142)
Q Consensus 40 v~~~~~~~-~Vvv-y~~~~Cp~C~~----------ak~lL~~~gi~~~~i~id~~~--~--~~~~~~L~~~~~~~~~g~~ 103 (142)
++++.... +|.+ .+-++|.+|+- +-.+|++. |.-|.||..+ | .-..+..+-+ +|..
T Consensus 36 f~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~---FV~IKVDREERPDvD~~Ym~~~q~~-----tG~G 107 (667)
T COG1331 36 FAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN---FVPVKVDREERPDVDSLYMNASQAI-----TGQG 107 (667)
T ss_pred HHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC---ceeeeEChhhccCHHHHHHHHHHHh-----ccCC
Confidence 33433333 4433 33479999993 33444444 4445666654 3 2233333333 6777
Q ss_pred eeeEEEE---CCEEe
Q 032368 104 QFPAVFV---GGKLF 115 (142)
Q Consensus 104 tvP~vfI---~G~~I 115 (142)
+.|.-.+ ||+.+
T Consensus 108 GWPLtVfLTPd~kPF 122 (667)
T COG1331 108 GWPLTVFLTPDGKPF 122 (667)
T ss_pred CCceeEEECCCCcee
Confidence 7775433 55543
No 321
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.76 E-value=16 Score=27.86 Aligned_cols=24 Identities=17% Similarity=0.096 Sum_probs=18.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHh
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLG 69 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~ 69 (142)
...|++|....||+|++.-.-+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 557889999999999766555554
No 322
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=50.46 E-value=4 Score=32.13 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhC
Q 032368 37 AKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGH 70 (142)
Q Consensus 37 ~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~ 70 (142)
++-.+++.+..=.+.|..+|||.|...+..|.++
T Consensus 31 eenw~~~l~gewmi~~~ap~~psc~~~~~~~~~~ 64 (248)
T KOG0913|consen 31 EENWKELLTGEWMIEFGAPWCPSCSDLIPHLENF 64 (248)
T ss_pred ccchhhhhchHHHHHhcCCCCccccchHHHHhcc
Confidence 3445556666667889999999999999999885
No 323
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=50.18 E-value=21 Score=25.77 Aligned_cols=59 Identities=29% Similarity=0.470 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCcEEEEe-eCCCC--HHHHHHHhhhhhccCCCceeeeEEEECCE-EeeccHHHHh
Q 032368 62 VVKTLLLGHGVNPAVFEV-ADGDE--AAVLDELSRIDVENGGGIIQFPAVFVGGK-LFGGLDRVMA 123 (142)
Q Consensus 62 ~ak~lL~~~gi~~~~i~i-d~~~~--~~~~~~L~~~~~~~~~g~~tvP~vfI~G~-~IGG~del~~ 123 (142)
.+..++.+.|++...+.- -.++. ..+.+..... ...|..++|.++|||+ .+-|.+.+-.
T Consensus 125 vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a---~~~gv~GvP~~vv~g~~~~~G~~~~~~ 187 (193)
T PF01323_consen 125 VLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEA---RQLGVFGVPTFVVNGKYRFFGADRLDE 187 (193)
T ss_dssp HHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHH---HHTTCSSSSEEEETTTEEEESCSSHHH
T ss_pred HHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHH---HHcCCcccCEEEECCEEEEECCCCHHH
Confidence 367788888886432111 11111 1122222111 1258899999999999 7888775543
No 324
>PRK15000 peroxidase; Provisional
Probab=49.81 E-value=1e+02 Score=23.13 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=14.2
Q ss_pred cCCCEEEEEcC--CCchHHHHHHHH
Q 032368 45 VENAVLVLGRP--GCCMCHVVKTLL 67 (142)
Q Consensus 45 ~~~~Vvvy~~~--~Cp~C~~ak~lL 67 (142)
....+++|.-+ +||.|..-..-|
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l 57 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF 57 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH
Confidence 34456665555 799999744333
No 325
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=49.54 E-value=1.4e+02 Score=24.34 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEE----------EeeCCCCHHHHHHHhhhhhccCCC
Q 032368 32 EADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVF----------EVADGDEAAVLDELSRIDVENGGG 101 (142)
Q Consensus 32 ~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i----------~id~~~~~~~~~~L~~~~~~~~~g 101 (142)
-+..+.+++.++++..-+.||+-+.|.--.-+.++-+++.||+-.. .|...++ ...++..++ +..+
T Consensus 41 dsf~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~~~~~~~~~i~~~P~--~~~Ai~diI--~~~~ 116 (364)
T cd06390 41 DSFEMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPE--LQDALISVI--EHYK 116 (364)
T ss_pred cHHHHHHHHHHHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCCCCCCCceEEEeChh--HHHHHHHHH--HHcC
Confidence 4556788899999999999999888888888888888888886432 2222333 223444433 1368
Q ss_pred ceeeeEEEECCEEeeccHHHHhh
Q 032368 102 IIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 102 ~~tvP~vfI~G~~IGG~del~~~ 124 (142)
|+.|=.||-++.-.++.+++.++
T Consensus 117 W~~v~iIYd~d~g~~~lq~l~~~ 139 (364)
T cd06390 117 WQKFVYIYDADRGLSVLQKVLDT 139 (364)
T ss_pred CcEEEEEEeCCccHHHHHHHHHh
Confidence 99998888766555555555443
No 326
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=49.43 E-value=94 Score=22.15 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=13.0
Q ss_pred cCCCEEEEEcC--CCchHHHH
Q 032368 45 VENAVLVLGRP--GCCMCHVV 63 (142)
Q Consensus 45 ~~~~Vvvy~~~--~Cp~C~~a 63 (142)
...++++|..| +||.|..-
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchh
Confidence 34466666665 79999864
No 327
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=47.67 E-value=24 Score=30.35 Aligned_cols=39 Identities=10% Similarity=-0.026 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHhc----CCCEEEEEcCCCchHHHHHHHHHhCC
Q 032368 32 EADTAAKSVEKMLV----ENAVLVLGRPGCCMCHVVKTLLLGHG 71 (142)
Q Consensus 32 ~~~~~~~~v~~~~~----~~~Vvvy~~~~Cp~C~~ak~lL~~~g 71 (142)
.+.+.++.++++.+ .-.+++|.. .|++|..++++|+++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 2 LDANLKTQLKQYLELLERPIELVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHHH
Confidence 34555555555553 334555665 7999999999998863
No 328
>PRK13191 putative peroxiredoxin; Provisional
Probab=47.26 E-value=51 Score=25.14 Aligned_cols=23 Identities=4% Similarity=-0.142 Sum_probs=14.2
Q ss_pred CCCEEE--EEcCCCchHHHHHHHHH
Q 032368 46 ENAVLV--LGRPGCCMCHVVKTLLL 68 (142)
Q Consensus 46 ~~~Vvv--y~~~~Cp~C~~ak~lL~ 68 (142)
...+++ |-.+|||.|..-...|.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~ 57 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFA 57 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHH
Confidence 334554 45679999997544443
No 329
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=47.20 E-value=16 Score=22.90 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=20.3
Q ss_pred CCCceeeeEEEECCEEeeccHHH-HhhhhcCChHHHHHh
Q 032368 99 GGGIIQFPAVFVGGKLFGGLDRV-MATHISGDLVPILKE 136 (142)
Q Consensus 99 ~~g~~tvP~vfI~G~~IGG~del-~~~~~~g~L~~~L~~ 136 (142)
+.|...+|.| |||.|-+ ...-++-+|.+||++
T Consensus 12 ~pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~ 44 (65)
T PF08599_consen 12 YPGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQ 44 (65)
T ss_pred cCCCCCCCee------ecchhhhhccccccccHHHHHHH
Confidence 3566677765 5666632 223456689999975
No 330
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=46.95 E-value=1.1e+02 Score=22.64 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=9.8
Q ss_pred CEEEEEc--CCCchHHHHH
Q 032368 48 AVLVLGR--PGCCMCHVVK 64 (142)
Q Consensus 48 ~Vvvy~~--~~Cp~C~~ak 64 (142)
.+++|.. .+||.|....
T Consensus 38 ~~lL~F~p~~~~~~C~~e~ 56 (199)
T PTZ00253 38 WVVLFFYPLDFTFVCPTEI 56 (199)
T ss_pred EEEEEEEcCCCCCcCHHHH
Confidence 3444444 5788888543
No 331
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=46.76 E-value=14 Score=24.66 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=37.8
Q ss_pred CcccCCCccccCCCCCCCccc-----hHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCc
Q 032368 13 GPAVAAGNTSSARGGGVTEEA-----DTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNP 74 (142)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~ 74 (142)
|+-++.|.+.-+.+...+... ....+.+++.... .+..|..|...+-..+.+++.+.|..|
T Consensus 57 G~ei~~H~~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 57 GHEIGNHGWSHPNLSTLSPEELRREIERSREILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp T-EEEEE-SSSSCGGGS-HHHHHHHHHHHHHHHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHhcCCcccccccCCHHHHHHHHHHHHHHHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 556666667767664444211 1224444554444 788899999999999999999999875
No 332
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=46.49 E-value=1.1e+02 Score=22.01 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=35.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEE---CCEEe
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFV---GGKLF 115 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI---~G~~I 115 (142)
.+.+++-+.-..=..+++++++.++.+..+.+..... ..+... .+..++|+.|+ +|+.+
T Consensus 65 ~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~----~~l~~~-----y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 65 QLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR----RELEAQ-----FSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH----HHHHHH-----cCCCCCCEEEEECCCCcEE
Confidence 4555555443444668999999998865444333222 233332 46778998876 56665
No 333
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=46.19 E-value=58 Score=24.77 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=47.2
Q ss_pred ccCcccCCCccccCCCCCCCc-----cchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEee
Q 032368 11 IHGPAVAAGNTSSARGGGVTE-----EADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVA 80 (142)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id 80 (142)
..||.++.|.+.-+.+...+. .-..+.+.++++....++..|.-|+=.+...+.+++.+.|..+-..+++
T Consensus 87 ~~GheIgnHt~~H~~~~~ls~~~~~~ei~~~~~~i~~~~G~~~~~~fR~P~G~~~~~~~~~l~~~Gy~~v~w~v~ 161 (224)
T TIGR02884 87 DEGHIVGNHSVHHPSLTAVNDEKFKEELTGVEEEFKKVTGQKEMKYFRPPRGVFSERTLAYTKELGYYTVFWSLA 161 (224)
T ss_pred HcCCEeeecCccCcCcccCCHHHHHHHHHHHHHHHHHHhCCCCCCEEeCCCCCcCHHHHHHHHHcCCcEEecccc
Confidence 468889999998887765542 1122344555555444477788887667888999999999886444444
No 334
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=45.75 E-value=24 Score=26.36 Aligned_cols=28 Identities=7% Similarity=-0.075 Sum_probs=20.3
Q ss_pred CEEEEEcCCCchHHHHHHHHH----hCCCCcE
Q 032368 48 AVLVLGRPGCCMCHVVKTLLL----GHGVNPA 75 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~----~~gi~~~ 75 (142)
+|.+|+..-||||--+++-|. ..+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~ 33 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDIT 33 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEE
Confidence 578999999999997665554 4455533
No 335
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=45.51 E-value=66 Score=25.50 Aligned_cols=63 Identities=29% Similarity=0.337 Sum_probs=43.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhCCCC-cEEEEeeCCCC---HHHHHHHhhhhhccCCCceeeeEEEECCEEe
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGHGVN-PAVFEVADGDE---AAVLDELSRIDVENGGGIIQFPAVFVGGKLF 115 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~-~~~i~id~~~~---~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I 115 (142)
..+.|.+|+..+|.-+--+|.+|.++.-. ...++|+...- .++.+.|.. ....+ .||+|+=-+
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~-------~~~kF-Ilf~DDLsF 117 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRD-------RPYKF-ILFCDDLSF 117 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhc-------CCCCE-EEEecCCCC
Confidence 34679999999999999999999987653 67888877653 333344432 12233 688887543
No 336
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=45.46 E-value=1.6e+02 Score=23.58 Aligned_cols=102 Identities=18% Similarity=0.307 Sum_probs=62.2
Q ss_pred CCCCccchHHHHHHHHHhc--CCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCc
Q 032368 27 GGVTEEADTAAKSVEKMLV--ENAVLVLGRPG--CCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGI 102 (142)
Q Consensus 27 ~~~~~~~~~~~~~v~~~~~--~~~Vvvy~~~~--Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~ 102 (142)
+|..+..+++++.+..++. ...++||.+|+ -|--.+++++|+..+++.- -|...+.....++|++. |
T Consensus 39 sGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~I--vI~D~p~~K~~d~l~~~------g- 109 (277)
T PRK00994 39 SGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCI--VIGDAPGKKVKDAMEEQ------G- 109 (277)
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEE--EEcCCCccchHHHHHhc------C-
Confidence 3444667777777777753 45799999886 6888899999999999853 34444443334777763 3
Q ss_pred eeeeEEEECCE-EeeccHHHHh----hhhcCChHHHHHhcCc
Q 032368 103 IQFPAVFVGGK-LFGGLDRVMA----THISGDLVPILKEAGA 139 (142)
Q Consensus 103 ~tvP~vfI~G~-~IGG~del~~----~~~~g~L~~~L~~~g~ 139 (142)
+=.|.+... .||---|+++ ..-++.+.+.|...|+
T Consensus 110 --~GYIivk~DpMIGArREFLDP~EMa~fNaD~~kVLa~tG~ 149 (277)
T PRK00994 110 --LGYIIVKADPMIGARREFLDPVEMALFNADVLKVLAGTGA 149 (277)
T ss_pred --CcEEEEecCccccchhhccCHHHHHHhhhhHHHHHHhhhH
Confidence 223444443 3444334322 1124556666665555
No 337
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=45.05 E-value=1.8e+02 Score=24.02 Aligned_cols=77 Identities=9% Similarity=0.024 Sum_probs=54.7
Q ss_pred CCCccccCcccCCCccccCCCCCCCccchHHHHH-HHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 6 PYRTYIHGPAVAAGNTSSARGGGVTEEADTAAKS-VEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
|+.... |.-....-..|.+.+..-++.+.... +..+....+|.+.+.++|.-..-++.+-..++.++..+..+.+-+
T Consensus 25 ~~~~~v--~~f~~~~~~~p~~d~~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~ 102 (327)
T TIGR01650 25 DSDMKV--PAFSHRDEHVPDIDPAYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVS 102 (327)
T ss_pred CCCCcc--cCcCCCCCCCCCCCCCccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 444444 33334444557777777777666444 444445678999999999999999999999999987777777654
No 338
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=44.39 E-value=1.4e+02 Score=22.52 Aligned_cols=74 Identities=15% Similarity=0.059 Sum_probs=46.0
Q ss_pred ccchHHHHHHHHHhcCC-CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE
Q 032368 31 EEADTAAKSVEKMLVEN-AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF 109 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~-~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf 109 (142)
+...+.++++.++.... +|+|.|. .-=.++..+...++++|-.-- -+.....++++|+++ +.+.=-++.
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSN---n~e~RV~~~~~~l~v~fi~~A-~KP~~~~fr~Al~~m------~l~~~~vvm 115 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSN---NKESRVARAAEKLGVPFIYRA-KKPFGRAFRRALKEM------NLPPEEVVM 115 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeC---CCHHHHHhhhhhcCCceeecc-cCccHHHHHHHHHHc------CCChhHEEE
Confidence 34567788888877653 5666654 345688888999999874322 122235677788776 222223466
Q ss_pred ECCEE
Q 032368 110 VGGKL 114 (142)
Q Consensus 110 I~G~~ 114 (142)
||++.
T Consensus 116 VGDqL 120 (175)
T COG2179 116 VGDQL 120 (175)
T ss_pred Ecchh
Confidence 77664
No 339
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=43.70 E-value=18 Score=21.90 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEE
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNPAVF 77 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i 77 (142)
+.+|+...=-.+..++.+|++.||++...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~ 29 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVK 29 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEE
Confidence 45677766667889999999999997544
No 340
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=43.25 E-value=71 Score=27.96 Aligned_cols=55 Identities=7% Similarity=-0.030 Sum_probs=39.7
Q ss_pred CCCccchHHHHHHHHHhcCCCEEEEEcCCCc-----hHHHHHHHHHhC-----CCCcEEEEeeCC
Q 032368 28 GVTEEADTAAKSVEKMLVENAVLVLGRPGCC-----MCHVVKTLLLGH-----GVNPAVFEVADG 82 (142)
Q Consensus 28 ~~~~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp-----~C~~ak~lL~~~-----gi~~~~i~id~~ 82 (142)
.....+..+++.++++-+.-.|.+|....-| +=.+++.+|+++ ++.+++++-+..
T Consensus 31 k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~ 95 (552)
T TIGR03521 31 KRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEE 95 (552)
T ss_pred CceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 3447889999999999888889889877654 346788999886 344555544443
No 341
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=42.95 E-value=75 Score=22.81 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=35.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCC---Cc-EEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEe
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGV---NP-AVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLF 115 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi---~~-~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I 115 (142)
-|+=|+.+|-|.|-+.-++|.+..- +| .++-+|.++-+.+.+ +-++ +..-++ ..|.+++|+
T Consensus 23 vViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~-~yel-----~dP~tv-mFF~rnkhm 87 (133)
T PF02966_consen 23 VVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQ-MYEL-----YDPCTV-MFFFRNKHM 87 (133)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHH-HTTS------SSEEE-EEEETTEEE
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhc-cccc-----CCCeEE-EEEecCeEE
Confidence 3577999999999999999877532 23 233344443332223 2233 333333 566699986
No 342
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=42.95 E-value=2e+02 Score=24.11 Aligned_cols=104 Identities=9% Similarity=0.094 Sum_probs=65.9
Q ss_pred CCccccCCC-CCCCccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEe-----------------
Q 032368 18 AGNTSSARG-GGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEV----------------- 79 (142)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~i----------------- 79 (142)
+.+.-.+.+ .....-+..+...+.++++..-+.||+-..|.--.-+.++-+++.||+-...-
T Consensus 32 ~~~~L~~~~~~~~~~d~F~~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~sic~~l~VP~is~~~~~~~~~~~~~~~~p~~~ 111 (400)
T cd06392 32 QSEKITYSIKSIEANNPFQAVQEACDLMTQGILALVTSTGCASANALQSLTDAMHIPHLFVQRNSGGSPRTACHLNPSPE 111 (400)
T ss_pred CCceEEEEEEecCCCChhHHHHHHHHHHhcCeEEEECCCchhHHHHHHHHhccCcCCcEeecccccccccccccCCCCcC
Confidence 333444555 44445677788888999988899999998888888889999999999644311
Q ss_pred ------eCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 80 ------ADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 80 ------d~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
...+....-+++..+. ...+|+.|=.||-++.-+.+..++.+
T Consensus 112 ~~~~~~~lrp~~~~~~Ai~dlV--~~~~W~~v~~iYD~d~gl~~lq~L~~ 159 (400)
T cd06392 112 GEEYTLAARPPVRLNDVMLKLV--TELRWQKFIVFYDSEYDIRGLQSFLD 159 (400)
T ss_pred cCceeEEecCchHHHHHHHHHH--HhCCCcEEEEEEECcccHHHHHHHHH
Confidence 1111100222333333 23689999888854554555555443
No 343
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=42.59 E-value=84 Score=20.51 Aligned_cols=41 Identities=10% Similarity=-0.007 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCEEEEEcCCCc--hHHHHHHHHHhCCCCcEEE
Q 032368 37 AKSVEKMLVENAVLVLGRPGCC--MCHVVKTLLLGHGVNPAVF 77 (142)
Q Consensus 37 ~~~v~~~~~~~~Vvvy~~~~Cp--~C~~ak~lL~~~gi~~~~i 77 (142)
...+...+...+++|+.++.+. .+..+|+.-++.++|+.+.
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 4457777777777777777654 4667888888888876443
No 344
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=42.46 E-value=1.2e+02 Score=24.48 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=35.6
Q ss_pred cccCCCccccCCCCCCCccchHHHHHHHHHhcCCCEEEEEcCC
Q 032368 14 PAVAAGNTSSARGGGVTEEADTAAKSVEKMLVENAVLVLGRPG 56 (142)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vvvy~~~~ 56 (142)
|+.+.+...|+.+.+.+...+++++.+.+.+.....++|+..+
T Consensus 39 p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~ 81 (370)
T PRK05937 39 PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGY 81 (370)
T ss_pred CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChH
Confidence 6777888899999999999999999999999877776666543
No 345
>PRK05569 flavodoxin; Provisional
Probab=42.43 E-value=1.1e+02 Score=20.97 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=13.9
Q ss_pred CCCEEEEEcCC---CchHHHHHHHHHhCCCC
Q 032368 46 ENAVLVLGRPG---CCMCHVVKTLLLGHGVN 73 (142)
Q Consensus 46 ~~~Vvvy~~~~---Cp~C~~ak~lL~~~gi~ 73 (142)
..++.+|++.+ +.....++++|...|.+
T Consensus 83 ~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~ 113 (141)
T PRK05569 83 NKKCILFGSYGWDNGEFMKLWKDRMKDYGFN 113 (141)
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHHCCCe
Confidence 34566666543 22233445556655554
No 346
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=41.83 E-value=33 Score=29.48 Aligned_cols=39 Identities=8% Similarity=-0.006 Sum_probs=25.9
Q ss_pred cchHHHHHHHHHhc----CCCEEEEEcCCCchHHHHHHHHHhCC
Q 032368 32 EADTAAKSVEKMLV----ENAVLVLGRPGCCMCHVVKTLLLGHG 71 (142)
Q Consensus 32 ~~~~~~~~v~~~~~----~~~Vvvy~~~~Cp~C~~ak~lL~~~g 71 (142)
.+.+.++.+++++. .-.+++|.. .|++|...+++|+++.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~ 44 (515)
T TIGR03140 2 LDQSLLAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEIA 44 (515)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHHH
Confidence 34455555555553 333455655 7999999999998863
No 347
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=41.75 E-value=68 Score=20.16 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCC
Q 032368 36 AAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVN 73 (142)
Q Consensus 36 ~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~ 73 (142)
..+.+..+-...+|++|.. .+..+..+...|...|.+
T Consensus 46 ~~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 46 LDDWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 3444555556678888887 667788888889988875
No 348
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=41.65 E-value=11 Score=28.96 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=41.6
Q ss_pred CEEEEEc-C----CCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEe--eccHH
Q 032368 48 AVLVLGR-P----GCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLF--GGLDR 120 (142)
Q Consensus 48 ~Vvvy~~-~----~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~I--GG~de 120 (142)
+-.||.+ . +|++|.....+=.+.+.++... ...++.+.++.. ..+.. =.++-||+.. -+..+
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~-----~~~~I~~~i~~~----~~~~~--~V~lTGGEP~~~~~l~~ 90 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPM-----SADEILADIKSL----GYKAR--GVSLTGGEPLLQPNLLE 90 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCcc-----CHHHHHHHHHhc----CCCcc--eEEEeCCcCCCcccHHH
Confidence 4456665 2 5889987655322223333222 223455556543 12222 3567799983 35666
Q ss_pred HHhhhhcCChHHHHHhcCccC
Q 032368 121 VMATHISGDLVPILKEAGALW 141 (142)
Q Consensus 121 l~~~~~~g~L~~~L~~~g~l~ 141 (142)
+.++.+..-+...|+..|.+|
T Consensus 91 Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 91 LLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred HHHHHHhCCceEEecCCCCcc
Confidence 666555434444444445444
No 349
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=40.82 E-value=1.1e+02 Score=20.59 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=13.5
Q ss_pred CCCEEEEEcCC-----CchHHHHHHHHHhCCCC
Q 032368 46 ENAVLVLGRPG-----CCMCHVVKTLLLGHGVN 73 (142)
Q Consensus 46 ~~~Vvvy~~~~-----Cp~C~~ak~lL~~~gi~ 73 (142)
..++.+|+.-+ |...+.++..|+++|.+
T Consensus 80 gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~ 112 (140)
T TIGR01753 80 GKKVALFGSGDWGYEFCEAVDDWEERLKEAGAT 112 (140)
T ss_pred CCEEEEEecCCCCchhhHHHHHHHHHHHHCCCE
Confidence 34566666532 22333445556555544
No 350
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=38.99 E-value=29 Score=27.36 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=39.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCc-------EEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEE--EECCEEe
Q 032368 49 VLVLGRPGCCMCHVVKTLLLGHGVNP-------AVFEVADGDEAAVLDELSRIDVENGGGIIQFPAV--FVGGKLF 115 (142)
Q Consensus 49 Vvvy~~~~Cp~C~~ak~lL~~~gi~~-------~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~v--fI~G~~I 115 (142)
++-|...|.|.|.+.-..+.++.++| -.+||..-++.. +.++--+ -.+.+.+|++ |-+|+-+
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a--~kfris~---s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVA--AKFRISL---SPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChH--Hheeecc---CcccccCCeEEEEccchhh
Confidence 66788899999999999998887765 356666666633 2222111 1445666665 4455543
No 351
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=38.54 E-value=85 Score=24.85 Aligned_cols=71 Identities=7% Similarity=0.071 Sum_probs=49.0
Q ss_pred ccCcccCCCccccCCCCCCCc-----cchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCC
Q 032368 11 IHGPAVAAGNTSSARGGGVTE-----EADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADG 82 (142)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~ 82 (142)
..||.++.|++.-|.+...+. .-..+.+.++++.. .+...|.-|+-.+...+.+++.+.|...-..++|..
T Consensus 135 ~~GheIGnHT~sH~~l~~ls~~~~~~Ei~~~~~~i~~~~G-~~p~~fRpP~G~~n~~~~~~l~~~G~~~v~Wsvd~~ 210 (268)
T TIGR02873 135 EQGHEIGNHAYNHPDMATLSKEEIYDQINQTNEIIEATIG-VTPKWFAPPSGSFNDNVVQIAADLQMGTIMWTVDTI 210 (268)
T ss_pred HCCCEEEecCCcCCCcccCCHHHHHHHHHHHHHHHHHHhC-CCCCEEECCCCCCCHHHHHHHHHCCCeEEEeccCCC
Confidence 468999999999998876542 11222344444443 356678888877889999999999987655566553
No 352
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=38.43 E-value=1e+02 Score=19.37 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCC
Q 032368 36 AAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGV 72 (142)
Q Consensus 36 ~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi 72 (142)
..+.+..+-...+|++|... ...+..+-..|...|.
T Consensus 41 ~~~~~~~~~~~~~vvl~c~~-g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 41 LRDRLNELPKDKEIIVYCAV-GLRGYIAARILTQNGF 76 (90)
T ss_pred HHHHHHhcCCCCcEEEEcCC-ChhHHHHHHHHHHCCC
Confidence 33444444455678888654 3456667778888887
No 353
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=38.32 E-value=1.1e+02 Score=20.65 Aligned_cols=61 Identities=16% Similarity=0.079 Sum_probs=41.4
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHH
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDEL 91 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L 91 (142)
..+++..+.+.+.+......+|..-.-..-.++.+.|..++-..-.-+++...+.++++.|
T Consensus 39 gI~d~~~~ev~~~L~~GssAl~~lv~~~~~d~v~~~l~~~gg~v~~t~ls~~~e~~L~~al 99 (102)
T PF06897_consen 39 GIDDEFIKEVGEALKPGSSALFLLVDEATEDKVDAALRKFGGKVLRTSLSEEDEDELQEAL 99 (102)
T ss_pred CCCHHHHHHHHhhcCCCceEEEEEeccCCHHHHHHHHHhcCCEEEeccCCHHHHHHHHHHH
Confidence 3567778888888888887777776667788999999999865333334443333343433
No 354
>PTZ00494 tuzin-like protein; Provisional
Probab=37.91 E-value=1.5e+02 Score=26.31 Aligned_cols=70 Identities=17% Similarity=0.244 Sum_probs=47.6
Q ss_pred HHHHHHHHh-----cCCCEEEEEcC-CCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEE
Q 032368 36 AAKSVEKML-----VENAVLVLGRP-GCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVF 109 (142)
Q Consensus 36 ~~~~v~~~~-----~~~~Vvvy~~~-~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vf 109 (142)
-+.++++.+ ...+|++|+-. +|.-|.-.++...+.+++--++||-..+|. ++.-++.+ .||.|-
T Consensus 379 eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDt-LrsVVKAL---------gV~nve 448 (664)
T PTZ00494 379 EEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDT-LRSVVRAL---------GVSNVE 448 (664)
T ss_pred HHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcch-HHHHHHHh---------CCCChh
Confidence 344455444 33478888874 899999999999999999888888777663 22333332 477777
Q ss_pred ECCEEe
Q 032368 110 VGGKLF 115 (142)
Q Consensus 110 I~G~~I 115 (142)
+-|.++
T Consensus 449 ~CGDlL 454 (664)
T PTZ00494 449 VCGDLL 454 (664)
T ss_pred hhccHH
Confidence 777654
No 355
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=36.67 E-value=1.6e+02 Score=21.27 Aligned_cols=56 Identities=20% Similarity=0.068 Sum_probs=32.3
Q ss_pred CCCCCccchHHHHHHHHHhc-----CCCEEEEEcCC------CchHHHHHHHHHhCCCCcEEEEeeC
Q 032368 26 GGGVTEEADTAAKSVEKMLV-----ENAVLVLGRPG------CCMCHVVKTLLLGHGVNPAVFEVAD 81 (142)
Q Consensus 26 ~~~~~~~~~~~~~~v~~~~~-----~~~Vvvy~~~~------Cp~C~~ak~lL~~~gi~~~~i~id~ 81 (142)
.++.|..........+.+.. ..+++|+.+++ +..-.++-+.+++.||....+-+..
T Consensus 84 ~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~ 150 (186)
T cd01480 84 IGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS 150 (186)
T ss_pred CCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc
Confidence 35666666555555555442 23566666665 3334455566778888865565554
No 356
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=36.39 E-value=44 Score=24.37 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=28.2
Q ss_pred EEEEEc--CCCchHHHHHHHHHhCCCCcEEEEeeCCCCH-HHHHHHhh
Q 032368 49 VLVLGR--PGCCMCHVVKTLLLGHGVNPAVFEVADGDEA-AVLDELSR 93 (142)
Q Consensus 49 Vvvy~~--~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~-~~~~~L~~ 93 (142)
|.|.+- +.=+.+++++..|+++|++|+..-+..+... ++.+.+++
T Consensus 3 V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~ 50 (150)
T PF00731_consen 3 VAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKE 50 (150)
T ss_dssp EEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHH
Confidence 444443 3568999999999999999987666666553 23334443
No 357
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=36.30 E-value=27 Score=26.57 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=18.9
Q ss_pred CCceeeeEEEECCEEeeccHHHH
Q 032368 100 GGIIQFPAVFVGGKLFGGLDRVM 122 (142)
Q Consensus 100 ~g~~tvP~vfI~G~~IGG~del~ 122 (142)
.|....|.+||+|+.++|.-++.
T Consensus 211 ~gv~gTPt~~v~~~~~~g~~~~~ 233 (244)
T COG1651 211 LGVNGTPTFIVNGKLVPGLPDLD 233 (244)
T ss_pred cCCCcCCeEEECCeeecCCCCHH
Confidence 57889999999999888876543
No 358
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=36.12 E-value=1.2e+02 Score=22.16 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=46.4
Q ss_pred cCcccCCCccccCCCCCCCc--cch---HHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCC
Q 032368 12 HGPAVAAGNTSSARGGGVTE--EAD---TAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADG 82 (142)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~ 82 (142)
.||..+.|.+.-+.+...+. ... .+.+.++++.. .+...|.-|+-.++..+.+++.+.|..+-..++|..
T Consensus 57 ~Gheig~Ht~~H~~~~~~~~~~~~~ei~~~~~~l~~~~g-~~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~~~~ 131 (191)
T TIGR02764 57 DGHEIGSHGYRHKNYTTLEDEKIKKDILRAQEIIEKLTG-KKPTLFRPPSGAFNKAVLKAAESLGYTVVHWSVDSR 131 (191)
T ss_pred CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHhC-CCCCEEECCCcCCCHHHHHHHHHcCCeEEEecCCCC
Confidence 57888888888777655432 111 12233444433 356778888888899999999999988655566553
No 359
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=36.05 E-value=1.4e+02 Score=21.07 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=41.5
Q ss_pred ccCCCCCccccCcccCCCccccCCCCC-CCccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHh
Q 032368 2 QEAIPYRTYIHGPAVAAGNTSSARGGG-VTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLG 69 (142)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~ 69 (142)
-+.+-|+.-| |.-++++-.-+.-++ ........+..|..+ +...|+|++.+. -|....+-|++
T Consensus 7 ~~~v~Y~~~P--P~sG~H~~~w~~~g~~~Y~~pvp~e~~VH~L-EHGaV~i~Y~p~--~~~~~v~~L~~ 70 (130)
T PF11303_consen 7 GERVAYNQSP--PTSGPHRPVWANCGEYVYDEPVPPERAVHNL-EHGAVWITYDPC--LPPDQVAKLKA 70 (130)
T ss_pred CcccccCCCC--CCCCCCCCccccCCCcccCCCCChHHHHHhh-hcCcEEEEECCC--CCHHHHHHHHH
Confidence 4568888888 988888887777664 455666667777764 455677777665 44444444433
No 360
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=35.53 E-value=1.1e+02 Score=21.01 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=34.3
Q ss_pred cccCcccCCCcc--ccCCCCCCCccchHHHHHHHHHhcC---CCEEEEEcCCCchHHHHHHHHHhC-CCCc
Q 032368 10 YIHGPAVAAGNT--SSARGGGVTEEADTAAKSVEKMLVE---NAVLVLGRPGCCMCHVVKTLLLGH-GVNP 74 (142)
Q Consensus 10 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~---~~Vvvy~~~~Cp~C~~ak~lL~~~-gi~~ 74 (142)
.|||.+...... ....=.+.++.+....+.+.+.+.. ..-.||+++..--.+.+.-+...+ +++.
T Consensus 5 iRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~~Sp~~Ra~qTa~~l~~~~~~~~~ 75 (153)
T cd07067 5 VRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAIQTAEIILEELPGLPV 75 (153)
T ss_pred EECCCCcccccCcccCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHHHHHHHHHHHHhcCCCCc
Confidence 478887654432 1122223444444444444443433 456788877766566666666655 5553
No 361
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.03 E-value=42 Score=21.61 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=17.4
Q ss_pred CchHHHHHHHHHhCCCCcEE
Q 032368 57 CCMCHVVKTLLLGHGVNPAV 76 (142)
Q Consensus 57 Cp~C~~ak~lL~~~gi~~~~ 76 (142)
=.||+++.++|+++++.|+-
T Consensus 15 vGF~rk~L~I~E~~~is~Eh 34 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEH 34 (76)
T ss_pred hcHHHHHHHHHHHcCCCEee
Confidence 37999999999999999753
No 362
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=34.65 E-value=55 Score=22.34 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=23.2
Q ss_pred CCchHHH-HHHHHHhCCCCcEEEEeeCC
Q 032368 56 GCCMCHV-VKTLLLGHGVNPAVFEVADG 82 (142)
Q Consensus 56 ~Cp~C~~-ak~lL~~~gi~~~~i~id~~ 82 (142)
.|-.|.. ++++|.+.+|+.+.+.++..
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 5888885 58999999999999999884
No 363
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=34.55 E-value=1.1e+02 Score=21.74 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeC
Q 032368 34 DTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVAD 81 (142)
Q Consensus 34 ~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~ 81 (142)
....+.+.++-...+|++|..+ +..+..+-..|...|.. ++..++.
T Consensus 37 ~~l~~~l~~l~~~~~vVv~c~~-g~~a~~aa~~L~~~G~~-~v~~L~G 82 (145)
T cd01535 37 AQLAQALEKLPAAERYVLTCGS-SLLARFAAADLAALTVK-PVFVLEG 82 (145)
T ss_pred HHHHHHHHhcCCCCCEEEEeCC-ChHHHHHHHHHHHcCCc-CeEEecC
Confidence 3445556665555678888876 56677777788888874 3344444
No 364
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=34.54 E-value=2.3e+02 Score=23.38 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=9.0
Q ss_pred HHHHHHhCCCCcEEEEeeCC
Q 032368 63 VKTLLLGHGVNPAVFEVADG 82 (142)
Q Consensus 63 ak~lL~~~gi~~~~i~id~~ 82 (142)
+++.|++.|||+-.++.|..
T Consensus 335 lk~~l~e~GIP~L~iE~D~~ 354 (377)
T TIGR03190 335 LKRHLEANGIPTLFLEFDIT 354 (377)
T ss_pred HHHHHHHCCCCEEEEecCCC
Confidence 34444444555444444433
No 365
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=34.45 E-value=1e+02 Score=20.91 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=32.9
Q ss_pred cccCcccCCCccc--cCCCCCCCccchHHHHHHHHHh-cC--CCEEEEEcCCCchHHHHHHHHHhC
Q 032368 10 YIHGPAVAAGNTS--SARGGGVTEEADTAAKSVEKML-VE--NAVLVLGRPGCCMCHVVKTLLLGH 70 (142)
Q Consensus 10 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~-~~--~~Vvvy~~~~Cp~C~~ak~lL~~~ 70 (142)
.|||.+....+.. ...-.+.++.+......+-..+ .. ....||+++..--.+.+..+...+
T Consensus 5 iRHg~~~~~~~~~~~~~~d~~Lt~~G~~qa~~l~~~l~~~~~~~~~v~sSp~~R~~~Ta~~~~~~~ 70 (153)
T cd07040 5 VRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAIQTAEIILEGL 70 (153)
T ss_pred EeCCCCccccCCCccCCCCCCcCHHHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHHHHHHh
Confidence 5788777654431 2233334444433333333333 33 467888887755556666666666
No 366
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=34.13 E-value=49 Score=22.65 Aligned_cols=19 Identities=42% Similarity=0.354 Sum_probs=14.7
Q ss_pred CceeeeEEEECCEEeeccH
Q 032368 101 GIIQFPAVFVGGKLFGGLD 119 (142)
Q Consensus 101 g~~tvP~vfI~G~~IGG~d 119 (142)
.....|.||.||++||==+
T Consensus 78 kDECTplvF~n~~LvgWG~ 96 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGWGD 96 (102)
T ss_pred CCceEEEEEECCEEEEEcH
Confidence 3456899999999997443
No 367
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=32.74 E-value=64 Score=23.76 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.6
Q ss_pred CCceeeeEEEE-CCEEeeccHH
Q 032368 100 GGIIQFPAVFV-GGKLFGGLDR 120 (142)
Q Consensus 100 ~g~~tvP~vfI-~G~~IGG~de 120 (142)
.|..++|.+++ ||+.+.|+.+
T Consensus 168 ~gi~gtPtii~~~G~~~~G~~~ 189 (197)
T cd03020 168 LGVNGTPTIVLADGRVVPGAPP 189 (197)
T ss_pred cCCCcccEEEECCCeEecCCCC
Confidence 58899999988 5999999864
No 368
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=32.73 E-value=44 Score=26.44 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhCCCCcEE
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGHGVNPAV 76 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~ 76 (142)
..+++.+|+.=.=..-..+...|++.||+|+.
T Consensus 17 ~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~ 48 (249)
T PRK15348 17 TACDVDLYRSLPEDEANQMLALLMQHHIDAEK 48 (249)
T ss_pred hcCChHHHcCCCHHHHHHHHHHHHHcCCCceE
Confidence 45567777755556677889999999999964
No 369
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=31.73 E-value=1.2e+02 Score=18.10 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcE
Q 032368 32 EADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPA 75 (142)
Q Consensus 32 ~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~ 75 (142)
+-..+++.++++.....+.|.+...+ ....+.+++++.|..+.
T Consensus 12 Pl~~~~~~l~~l~~g~~l~v~~d~~~-~~~~i~~~~~~~g~~~~ 54 (69)
T cd00291 12 PVLKTKKALEKLKSGEVLEVLLDDPG-AVEDIPAWAKETGHEVL 54 (69)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecCCc-HHHHHHHHHHHcCCEEE
Confidence 34456666666555555565555443 56777777777777653
No 370
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=31.69 E-value=2.4e+02 Score=22.04 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=54.3
Q ss_pred CCCCccccCcccCCCccccCC------CCCCCccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEE
Q 032368 5 IPYRTYIHGPAVAAGNTSSAR------GGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFE 78 (142)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~ 78 (142)
+|...|..+|-..+....+|. +++....+.-....+..+-...+-+||..+.=-.-..+.+.++..+|+|.-+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 130 FPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred cccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEE
Confidence 556666666655555555555 45566677777888888777888888888877788888888888888875444
Q ss_pred ee
Q 032368 79 VA 80 (142)
Q Consensus 79 id 80 (142)
+.
T Consensus 210 Yt 211 (252)
T PF11019_consen 210 YT 211 (252)
T ss_pred Ec
Confidence 43
No 371
>PLN02590 probable tyrosine decarboxylase
Probab=31.20 E-value=2.5e+02 Score=24.68 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCC---cEEEEeeCCC----C-HHHHHHHhhhhhccCCCceeeeEEEE---CCEEe
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVN---PAVFEVADGD----E-AAVLDELSRIDVENGGGIIQFPAVFV---GGKLF 115 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~---~~~i~id~~~----~-~~~~~~L~~~~~~~~~g~~tvP~vfI---~G~~I 115 (142)
.++++|.+..+.+|. .+.+.-+|+. ...+.+|... + ..+++.+.+-. .....|.+.+ |-...
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~-----~~g~~P~~VvaTaGTT~t 300 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDL-----AKGFIPFFICATVGTTSS 300 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHH-----hcCCCcEEEEEEeCCCCC
Confidence 578999999999985 4555555663 4555666321 3 34445554321 1224565544 44567
Q ss_pred eccHHHHhhhhcCChHHHHHhcC
Q 032368 116 GGLDRVMATHISGDLVPILKEAG 138 (142)
Q Consensus 116 GG~del~~~~~~g~L~~~L~~~g 138 (142)
|.+|++.++ .++.++.|
T Consensus 301 GaiDpl~~I------a~i~~~~g 317 (539)
T PLN02590 301 AAVDPLVPL------GNIAKKYG 317 (539)
T ss_pred cccCCHHHH------HHHHHHhC
Confidence 888888664 34455554
No 372
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=30.76 E-value=2.1e+02 Score=20.64 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=26.6
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEeeC
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGHGVN--PAVFEVAD 81 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~--~~~i~id~ 81 (142)
+....+|+..-.||.|....++|.+..-. +.+..+..
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~ 44 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQS 44 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccC
Confidence 34457778888999999999999988554 44444433
No 373
>PHA00729 NTP-binding motif containing protein
Probab=30.71 E-value=2.5e+02 Score=21.83 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=20.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCC
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHG 71 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~g 71 (142)
.|+|++.|+++-..-+..+..+.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999988888887754
No 374
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=30.54 E-value=1.6e+02 Score=20.76 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 61 HVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 61 ~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
.++.++|++++++|+.++.+....
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t 25 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFT 25 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCC
Confidence 467899999999998887665443
No 375
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=29.99 E-value=1.2e+02 Score=18.41 Aligned_cols=28 Identities=18% Similarity=0.087 Sum_probs=20.7
Q ss_pred cCCCEEEEEcCCCchHHHHHHHHHhCCCC
Q 032368 45 VENAVLVLGRPGCCMCHVVKTLLLGHGVN 73 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~ 73 (142)
...+|++|. ..+..+..+-..|.+.|.+
T Consensus 55 ~~~~iv~~c-~~g~~a~~~~~~l~~~G~~ 82 (100)
T smart00450 55 KDKPVVVYC-RSGNRSAKAAWLLRELGFK 82 (100)
T ss_pred CCCeEEEEe-CCCcHHHHHHHHHHHcCCC
Confidence 445788887 5567777888888888876
No 376
>PRK06756 flavodoxin; Provisional
Probab=29.87 E-value=1.9e+02 Score=20.02 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=12.7
Q ss_pred CCCEEEEEcC------CCchHHHHHHHHHhCCCC
Q 032368 46 ENAVLVLGRP------GCCMCHVVKTLLLGHGVN 73 (142)
Q Consensus 46 ~~~Vvvy~~~------~Cp~C~~ak~lL~~~gi~ 73 (142)
..++.+|++. .|..-+...+.|.+.|..
T Consensus 83 ~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~ 116 (148)
T PRK06756 83 GKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAA 116 (148)
T ss_pred CCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCE
Confidence 3456666551 133333444445555543
No 377
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=29.56 E-value=2.7e+02 Score=22.78 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=38.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeecc
Q 032368 47 NAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGL 118 (142)
Q Consensus 47 ~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~ 118 (142)
.++.|.+.+......++...|++.++++..+++..++..+..++..+..+ ..+ ..+ .|=|||=-+-..
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~--~~~-~D~-IIaiGGGS~~D~ 90 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEAR--NAG-CDV-VIAIGGGSVIDA 90 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHH--hcC-CCE-EEEecCchHHHH
Confidence 57777776555567778888999999987776655554333333322221 112 233 566666544333
No 378
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.47 E-value=36 Score=26.43 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=15.3
Q ss_pred CCCEEEEEcCCCchHHHH
Q 032368 46 ENAVLVLGRPGCCMCHVV 63 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~a 63 (142)
.-.|++|+-+-||+|.+-
T Consensus 40 ~v~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 40 KVNITLYYEALCPDCSKF 57 (220)
T ss_pred eeEEEEEEEecCccHHHH
Confidence 347999999999999954
No 379
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=29.37 E-value=46 Score=22.61 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=14.2
Q ss_pred CceeeeEEEECCEEeeccH
Q 032368 101 GIIQFPAVFVGGKLFGGLD 119 (142)
Q Consensus 101 g~~tvP~vfI~G~~IGG~d 119 (142)
+....=++||||.++|.+.
T Consensus 60 g~~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 60 GNAFRASVWVNGWFLGSYW 78 (111)
T ss_dssp STTEEEEEEETTEEEEEEE
T ss_pred CCceEEEEEECCEEeeeec
Confidence 3334459999999999865
No 380
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=28.95 E-value=1.9e+02 Score=19.78 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCE
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVNPA-VFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGK 113 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~-~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~ 113 (142)
..+|++.-.-.|+|..+++. ..+.|...- +++.+..+.. ..+. +.........++|.++|..+
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~~~~---~~~~-m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 34 NGNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNNDSDE---YYVE-MIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCccc---cceE-ecCCCCCCCceEEEEEecHH
Confidence 35788888889999999888 555666543 3332222111 1111 10000012357899998765
No 381
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=28.11 E-value=1.3e+02 Score=24.83 Aligned_cols=71 Identities=11% Similarity=0.041 Sum_probs=40.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC--C-HHHHHHHhhhhhccCCCceeeeEEEE---CCEEeeccH
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD--E-AAVLDELSRIDVENGGGIIQFPAVFV---GGKLFGGLD 119 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~--~-~~~~~~L~~~~~~~~~g~~tvP~vfI---~G~~IGG~d 119 (142)
..+.++|....+.+|. .+...-+|+....+.+|.+. + .++++.+.+.. ....+|.+.| |-..-|.+|
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~-----~~g~~p~~vvat~Gtt~~Ga~D 211 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDI-----ANGKTPFAVVATAGTTNTGAID 211 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHH-----HTTEEEEEEEEEBS-TTTSBB-
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccc-----cccccceeeeccCCCccccccc
Confidence 3578899999899887 56677778876666666633 2 34445554431 1224563332 344567788
Q ss_pred HHHh
Q 032368 120 RVMA 123 (142)
Q Consensus 120 el~~ 123 (142)
++.+
T Consensus 212 ~l~~ 215 (373)
T PF00282_consen 212 PLEE 215 (373)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 7765
No 382
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=28.04 E-value=1.6e+02 Score=25.36 Aligned_cols=41 Identities=12% Similarity=0.279 Sum_probs=26.9
Q ss_pred chHHHHHHHHHhcCC-CEEEEEcCCCchHHHH----HHHHHhCCCCc
Q 032368 33 ADTAAKSVEKMLVEN-AVLVLGRPGCCMCHVV----KTLLLGHGVNP 74 (142)
Q Consensus 33 ~~~~~~~v~~~~~~~-~Vvvy~~~~Cp~C~~a----k~lL~~~gi~~ 74 (142)
...+.+..+++..++ ..+|. .|+|+-|.+- -+-+++.||+.
T Consensus 322 ~~~g~eIa~~Lk~dgVDAvIL-tstCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 322 KQFAKEFSKELLAAGVDAVIL-TSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-cCCCCcchhHHHHHHHHHHHcCCCE
Confidence 345566666666665 44444 4788888854 56678889985
No 383
>PRK07308 flavodoxin; Validated
Probab=28.01 E-value=2.1e+02 Score=19.83 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=4.3
Q ss_pred CCEEEEEc
Q 032368 47 NAVLVLGR 54 (142)
Q Consensus 47 ~~Vvvy~~ 54 (142)
.++.+|+.
T Consensus 83 k~~~vfG~ 90 (146)
T PRK07308 83 KIYGVVGS 90 (146)
T ss_pred CEEEEEee
Confidence 35555555
No 384
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=28.01 E-value=2e+02 Score=19.55 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=27.1
Q ss_pred HhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeC
Q 032368 43 MLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVAD 81 (142)
Q Consensus 43 ~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~ 81 (142)
+....+|++|-......+.++-.+|+..|.+ ...++-
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~G 119 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLEG 119 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeCC
Confidence 3456689999976667777888999999984 455544
No 385
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=27.69 E-value=1.1e+02 Score=23.05 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=35.1
Q ss_pred CCCCCccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhC
Q 032368 26 GGGVTEEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGH 70 (142)
Q Consensus 26 ~~~~~~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~ 70 (142)
-+.++..+.+..+.++++.....|+||+-|.-+ =.+.++.+.+.
T Consensus 27 ~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~-GekIRk~i~~~ 70 (174)
T TIGR00334 27 ETNGSALKDETINLIKKAQKKQGVIILTDPDFP-GEKIRKKIEQH 70 (174)
T ss_pred EECCCccCHHHHHHHHHHhhcCCEEEEeCCCCc-hHHHHHHHHHH
Confidence 456677899999999999999999999998744 45677777663
No 386
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=27.12 E-value=1.9e+02 Score=20.28 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.1
Q ss_pred HHHHHHHHhCCCCcEEEEeeCCCC
Q 032368 61 HVVKTLLLGHGVNPAVFEVADGDE 84 (142)
Q Consensus 61 ~~ak~lL~~~gi~~~~i~id~~~~ 84 (142)
+++.++|++++++|+.++......
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t 25 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGT 25 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCC
Confidence 478899999999999887665443
No 387
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=27.10 E-value=1.2e+02 Score=20.55 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=31.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCH
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEA 85 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~ 85 (142)
+|.+++.++|.-..-++.+.+.++.++..+.+..+.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~ 38 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTE 38 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccc
Confidence 48899999999999999999999888877777776654
No 388
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=26.96 E-value=2.3e+02 Score=20.61 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=21.3
Q ss_pred CCCEEEEEc-CCCchHHH-HHHHHHhCCCCc
Q 032368 46 ENAVLVLGR-PGCCMCHV-VKTLLLGHGVNP 74 (142)
Q Consensus 46 ~~~Vvvy~~-~~Cp~C~~-ak~lL~~~gi~~ 74 (142)
...++||.. +-|.+|+. +..+.++.|++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~ 129 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKS 129 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCe
Confidence 445677765 57999995 466778899984
No 389
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=26.55 E-value=3.6e+02 Score=22.33 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHHHh---cCCCEEEEEcCCCchH----HHHHHHHHhCCCCcEEEEeeC
Q 032368 38 KSVEKML---VENAVLVLGRPGCCMC----HVVKTLLLGHGVNPAVFEVAD 81 (142)
Q Consensus 38 ~~v~~~~---~~~~Vvvy~~~~Cp~C----~~ak~lL~~~gi~~~~i~id~ 81 (142)
+.+.+++ +-..|+.+....|..- ..+++.|++.|||+-.++++.
T Consensus 311 ~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 311 KYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred HHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 3444444 3345777777777432 256777888888877667665
No 390
>PRK13463 phosphatase PhoE; Provisional
Probab=25.97 E-value=2.7e+02 Score=20.50 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=31.7
Q ss_pred cccCcccCCCc--cccCCCCCCCccchHHHHHHHHHhcCCCE-EEEEcCCCchHHHHHHHHHhCCCCc
Q 032368 10 YIHGPAVAAGN--TSSARGGGVTEEADTAAKSVEKMLVENAV-LVLGRPGCCMCHVVKTLLLGHGVNP 74 (142)
Q Consensus 10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~V-vvy~~~~Cp~C~~ak~lL~~~gi~~ 74 (142)
.|||.+..-.. +.-..=.+.|+.+....+.+.+.+...++ .||++|-..--+.|.-+....+++.
T Consensus 8 vRHG~t~~n~~~~~~G~~d~~Lt~~G~~Qa~~~~~~l~~~~~~~i~sSpl~Ra~qTA~~i~~~~~~~~ 75 (203)
T PRK13463 8 TRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMKDLSIHAIYSSPSERTLHTAELIKGERDIPI 75 (203)
T ss_pred EeCCCCccchhCcccCCCCCCcCHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHhcCCCCc
Confidence 47887664211 11111234455555555555555554333 5676655443444444444556653
No 391
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=25.56 E-value=45 Score=20.49 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=9.9
Q ss_pred CCCchHHHHHHHH
Q 032368 55 PGCCMCHVVKTLL 67 (142)
Q Consensus 55 ~~Cp~C~~ak~lL 67 (142)
|-||.|+++-+-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 4699999886654
No 392
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=25.33 E-value=3.1e+02 Score=24.19 Aligned_cols=50 Identities=14% Similarity=0.071 Sum_probs=31.5
Q ss_pred hcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhh
Q 032368 44 LVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRI 94 (142)
Q Consensus 44 ~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~ 94 (142)
+++.+|++-+ .||+--..+.-.-++.+.+|.++-||..+..+-+.-|+.+
T Consensus 357 I~dgdvilty-g~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~L 406 (556)
T KOG1467|consen 357 IQDGDVLLTY-GSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRL 406 (556)
T ss_pred hhcCCEEEEe-cchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHH
Confidence 3445443322 3555555555555678889999999999885544555554
No 393
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=25.17 E-value=58 Score=19.78 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=10.2
Q ss_pred EEEECCEEeecc
Q 032368 107 AVFVGGKLFGGL 118 (142)
Q Consensus 107 ~vfI~G~~IGG~ 118 (142)
.|||||+++|-.
T Consensus 14 ~V~vdg~~~G~t 25 (71)
T PF08308_consen 14 EVYVDGKYIGTT 25 (71)
T ss_pred EEEECCEEeccC
Confidence 799999999943
No 394
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=24.97 E-value=58 Score=22.13 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=13.1
Q ss_pred eeeeEEEECCEEeecc
Q 032368 103 IQFPAVFVGGKLFGGL 118 (142)
Q Consensus 103 ~tvP~vfI~G~~IGG~ 118 (142)
..-|.|+|||++||..
T Consensus 40 ~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 40 AVKPDVYVDGELIGEL 55 (117)
T ss_pred cccceEEECCEEEEEe
Confidence 4558999999999864
No 395
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=24.31 E-value=2e+02 Score=20.42 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 59 MCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 59 ~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
....++++|.++|.+.....+-.++..++.+.+++... .....+ .|..||--.|..|-+.+.
T Consensus 21 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~---~~~~Dl-VittGG~s~g~~D~t~~a 82 (152)
T cd00886 21 SGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWAD---EDGVDL-ILTTGGTGLAPRDVTPEA 82 (152)
T ss_pred hHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHh---cCCCCE-EEECCCcCCCCCcCcHHH
Confidence 44567888999998765555555554556666765531 002233 566678777777754443
No 396
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=24.24 E-value=1.3e+02 Score=24.50 Aligned_cols=31 Identities=13% Similarity=0.032 Sum_probs=23.2
Q ss_pred cCCCchHHHHHHHHHhCC---CCcEEEEeeCCCC
Q 032368 54 RPGCCMCHVVKTLLLGHG---VNPAVFEVADGDE 84 (142)
Q Consensus 54 ~~~Cp~C~~ak~lL~~~g---i~~~~i~id~~~~ 84 (142)
--+|..|.+++-+|+.+. .++.++-||.+.+
T Consensus 82 ELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~ 115 (319)
T TIGR03439 82 ELGSGNLRKVGILLEALERQKKSVDYYALDVSRS 115 (319)
T ss_pred EECCCchHHHHHHHHHHHhcCCCceEEEEECCHH
Confidence 458999999999888763 3466777777654
No 397
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=24.14 E-value=1.9e+02 Score=19.85 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHhh
Q 032368 59 MCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMAT 124 (142)
Q Consensus 59 ~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~~ 124 (142)
.-..+.++|+++|.+.....+-.++...+.+.+++.. ....+ .|..+|--+|-.|-+.+.
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~-----~~~dl-iittGG~g~g~~D~t~~~ 78 (135)
T smart00852 19 NGPALAELLTELGIEVTRYVIVPDDKEAIKEALREAL-----ERADL-VITTGGTGPGPDDVTPEA 78 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH-----hCCCE-EEEcCCCCCCCCcCcHHH
Confidence 3456788899999876555554544455667776653 22334 566688777666654443
No 398
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=24.10 E-value=53 Score=26.01 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=18.4
Q ss_pred HhcCCCEEEEE--cCCCchHHHH----HHHHHhCCC
Q 032368 43 MLVENAVLVLG--RPGCCMCHVV----KTLLLGHGV 72 (142)
Q Consensus 43 ~~~~~~Vvvy~--~~~Cp~C~~a----k~lL~~~gi 72 (142)
+...+++.||. ..|||+|... --.|.++|-
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 34445544443 3579999954 356777764
No 399
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=23.43 E-value=1.6e+02 Score=20.67 Aligned_cols=22 Identities=18% Similarity=-0.001 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCCcEEEEeeCCC
Q 032368 62 VVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 62 ~ak~lL~~~gi~~~~i~id~~~ 83 (142)
.+.++|++++++|+.++.+...
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~ 23 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDP 23 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCC
Confidence 4789999999999999887653
No 400
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.25 E-value=2.2e+02 Score=23.53 Aligned_cols=54 Identities=11% Similarity=0.239 Sum_probs=31.1
Q ss_pred EEEEEc----CCCchHHHHHHHHHhC------------CCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEEC
Q 032368 49 VLVLGR----PGCCMCHVVKTLLLGH------------GVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVG 111 (142)
Q Consensus 49 Vvvy~~----~~Cp~C~~ak~lL~~~------------gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~ 111 (142)
|++|+. ..|+-|+.+.+-+.-. |-+.-+..||.++..+. ++.+ +..++|.+++=
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~---Fq~l------~ln~~P~l~~f 133 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV---FQQL------NLNNVPHLVLF 133 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH---HHHh------cccCCCeEEEe
Confidence 666665 3799999887544331 11223445666555433 3333 45678888874
No 401
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.14 E-value=1.6e+02 Score=19.26 Aligned_cols=19 Identities=11% Similarity=0.221 Sum_probs=14.6
Q ss_pred CceeeeEEEECCEEeeccH
Q 032368 101 GIIQFPAVFVGGKLFGGLD 119 (142)
Q Consensus 101 g~~tvP~vfI~G~~IGG~d 119 (142)
....+|...|+.+..|-.|
T Consensus 68 ~~~~~pv~~I~~~~Y~~~d 86 (96)
T cd05564 68 AEYGIPVAVIDMMDYGMMN 86 (96)
T ss_pred ccCCCcEEEcChHhcccCC
Confidence 4567899999998776554
No 402
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=23.06 E-value=88 Score=18.93 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=21.1
Q ss_pred HHhcCCCEEEEEcCCCchHHHHHHHHHhCCCC
Q 032368 42 KMLVENAVLVLGRPGCCMCHVVKTLLLGHGVN 73 (142)
Q Consensus 42 ~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~ 73 (142)
......+|++|... |.....+-..|.+.|..
T Consensus 46 ~~~~~~~vv~~c~~-~~~a~~~~~~l~~~G~~ 76 (89)
T cd00158 46 ELDKDKPIVVYCRS-GNRSARAAKLLRKAGGT 76 (89)
T ss_pred ccCCCCeEEEEeCC-CchHHHHHHHHHHhCcc
Confidence 33455567777765 67777888888888743
No 403
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=22.84 E-value=3.6e+02 Score=21.81 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=22.1
Q ss_pred CCEEEEEcC---CCchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhh
Q 032368 47 NAVLVLGRP---GCCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSR 93 (142)
Q Consensus 47 ~~Vvvy~~~---~Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~ 93 (142)
.+|.+|+.| +-|.|+.+.+-+-+.--+.--+-.|...|.++...|.+
T Consensus 119 Tr~~vy~qPp~~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLle 168 (284)
T PF07894_consen 119 TRATVYFQPPKDGQPHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLE 168 (284)
T ss_pred ceEEEEeCCCCCCCCCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHH
Confidence 456666665 34556555444433333333334455555444444444
No 404
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=22.83 E-value=28 Score=20.08 Aligned_cols=6 Identities=33% Similarity=0.949 Sum_probs=4.5
Q ss_pred CchHHH
Q 032368 57 CCMCHV 62 (142)
Q Consensus 57 Cp~C~~ 62 (142)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 888874
No 405
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=22.81 E-value=57 Score=22.75 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=17.9
Q ss_pred CCceeeeEEEECCEEe-eccHHHHh
Q 032368 100 GGIIQFPAVFVGGKLF-GGLDRVMA 123 (142)
Q Consensus 100 ~g~~tvP~vfI~G~~I-GG~del~~ 123 (142)
.|..++|.|.+|+++| -|-.|+.+
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~ 104 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVAR 104 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHH
Confidence 5789999999999875 45554444
No 406
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=22.78 E-value=2e+02 Score=19.77 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 60 CHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 60 C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
-..++++|.++|.+.....+-.++..++++.+++.+ .. ..+ .|..+|--+|..|-+.+
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~----~~-~Dl-vittGG~g~g~~D~t~~ 78 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVVPDDADSIRAALIEAS----RE-ADL-VLTTGGTGVGRRDVTPE 78 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHH----hc-CCE-EEECCCCCCCCCcchHH
Confidence 446677788888765554444444455666666542 11 233 45557766666664444
No 407
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=22.52 E-value=83 Score=24.35 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=17.2
Q ss_pred CCCchHHHHHHHHHhCCCC
Q 032368 55 PGCCMCHVVKTLLLGHGVN 73 (142)
Q Consensus 55 ~~Cp~C~~ak~lL~~~gi~ 73 (142)
..||.++.+++.|.+.++.
T Consensus 154 ~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 154 SGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred ccCcHHHHHHHHHHHcCCC
Confidence 4699999999999999886
No 408
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=22.33 E-value=66 Score=23.60 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=13.6
Q ss_pred EEEcCCCchHHHHHHHHHhC
Q 032368 51 VLGRPGCCMCHVVKTLLLGH 70 (142)
Q Consensus 51 vy~~~~Cp~C~~ak~lL~~~ 70 (142)
+|+.|-|++|-.....|.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 68999999999776655543
No 409
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.23 E-value=52 Score=26.67 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=8.3
Q ss_pred EcCCCchHHHH
Q 032368 53 GRPGCCMCHVV 63 (142)
Q Consensus 53 ~~~~Cp~C~~a 63 (142)
-++.||||++-
T Consensus 269 KkqtCPYCKek 279 (328)
T KOG1734|consen 269 KKQTCPYCKEK 279 (328)
T ss_pred CCCCCchHHHH
Confidence 34689999963
No 410
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=22.18 E-value=2.8e+02 Score=23.58 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=24.3
Q ss_pred cCCCEEEEEcCCCchH----HHHHHHHHhCCCCcEEEEeeCCC
Q 032368 45 VENAVLVLGRPGCCMC----HVVKTLLLGHGVNPAVFEVADGD 83 (142)
Q Consensus 45 ~~~~Vvvy~~~~Cp~C----~~ak~lL~~~gi~~~~i~id~~~ 83 (142)
+-..|+.++..+|..- ..+++.|++.||||-.++-|..+
T Consensus 361 ~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ietD~~d 403 (430)
T TIGR03191 361 NVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFEGNMGD 403 (430)
T ss_pred CCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEECCCCC
Confidence 3345777777777422 24566677777777666666554
No 411
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=22.15 E-value=95 Score=17.88 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=13.1
Q ss_pred ceeeeEEEECCEEeeccH
Q 032368 102 IIQFPAVFVGGKLFGGLD 119 (142)
Q Consensus 102 ~~tvP~vfI~G~~IGG~d 119 (142)
...+..|||||+.+-.-.
T Consensus 17 ~~GI~~V~VNG~~vv~~g 34 (48)
T PF07908_consen 17 AEGIDYVFVNGQIVVEDG 34 (48)
T ss_dssp -BSEEEEEETTEEEECTT
T ss_pred CCCEEEEEECCEEEEECC
Confidence 356899999999874433
No 412
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=22.02 E-value=2.1e+02 Score=20.06 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceeeeEEEECCEEeeccHHHHh
Q 032368 60 CHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQFPAVFVGGKLFGGLDRVMA 123 (142)
Q Consensus 60 C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~IGG~del~~ 123 (142)
...+.++|.++|++.....+-.++..++.+.+++.. ....+ .|..+|--.|..|-+.+
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-----~~~Dl-iIttGG~g~g~~D~t~~ 86 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV-----DEADV-VLTTGGTGVGPRDVTPE 86 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH-----hCCCE-EEECCCCCCCCCccHHH
Confidence 345677788888776555554444445556665542 11223 44456665655554433
No 413
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=22.02 E-value=1.1e+02 Score=20.64 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=27.2
Q ss_pred CCCEEEEEc-CCCchHHHHHHHHHhCCCCcEEEEeeC
Q 032368 46 ENAVLVLGR-PGCCMCHVVKTLLLGHGVNPAVFEVAD 81 (142)
Q Consensus 46 ~~~Vvvy~~-~~Cp~C~~ak~lL~~~gi~~~~i~id~ 81 (142)
..+|+|++. +....|.++.+.|.+.|++...+++-.
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEE
Confidence 456777666 456889999999999999977766543
No 414
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=21.87 E-value=2.6e+02 Score=18.79 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=20.8
Q ss_pred HHHHHhcCCCEEEEEcCCCchHH----HHHHHHHhCCCCcEEEEe
Q 032368 39 SVEKMLVENAVLVLGRPGCCMCH----VVKTLLLGHGVNPAVFEV 79 (142)
Q Consensus 39 ~v~~~~~~~~Vvvy~~~~Cp~C~----~ak~lL~~~gi~~~~i~i 79 (142)
.++++.+..+|+|... .+++++ .+..+|.....+...+++
T Consensus 79 ~l~~l~~~~~I~iW~~-~~~~dq~gl~~~l~~L~~~~~~I~~v~~ 122 (124)
T PF08874_consen 79 RLEELPEDDPIVIWYG-DNAYDQLGLRYLLSLLKDKPNRIYVVNV 122 (124)
T ss_pred HHHhCCCCCEEEEEeC-CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 3444445556666654 456665 445555555544444443
No 415
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.83 E-value=3.4e+02 Score=21.19 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=39.9
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEEeeCCC--CHHHHHHHhhhhhccCCCceeeeEE
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFEVADGD--EAAVLDELSRIDVENGGGIIQFPAV 108 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~id~~~--~~~~~~~L~~~~~~~~~g~~tvP~v 108 (142)
+.+.+.-..+.+......|..|++ ||..+..++|.++++++ +.|-..+ +..+.+++.+ ...|.|
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~st---pfd~~s~d~l~~~~~~~--~KIaS~dl~n~~lL~~~A~---------tgkPvI 117 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFST---PFDEESVDFLEELGVPA--YKIASGDLTNLPLLEYIAK---------TGKPVI 117 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEE---E-SHHHHHHHHHHT-SE--EEE-GGGTT-HHHHHHHHT---------T-S-EE
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEC---CCCHHHHHHHHHcCCCE--EEeccccccCHHHHHHHHH---------hCCcEE
Confidence 466677777888888899999998 55778888899999884 3443332 3444444433 346766
Q ss_pred EECC
Q 032368 109 FVGG 112 (142)
Q Consensus 109 fI~G 112 (142)
.=-|
T Consensus 118 lSTG 121 (241)
T PF03102_consen 118 LSTG 121 (241)
T ss_dssp EE-T
T ss_pred EECC
Confidence 5433
No 416
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=21.76 E-value=4.3e+02 Score=21.21 Aligned_cols=99 Identities=19% Similarity=0.299 Sum_probs=51.1
Q ss_pred CccchHHHHHHHHHh--cCCCEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEeeCCCCHHHHHHHhhhhhccCCCceee
Q 032368 30 TEEADTAAKSVEKML--VENAVLVLGRPG--CCMCHVVKTLLLGHGVNPAVFEVADGDEAAVLDELSRIDVENGGGIIQF 105 (142)
Q Consensus 30 ~~~~~~~~~~v~~~~--~~~~Vvvy~~~~--Cp~C~~ak~lL~~~gi~~~~i~id~~~~~~~~~~L~~~~~~~~~g~~tv 105 (142)
.+...+.++.+.+++ -...++||..|+ -|--..++.+|.+.+++.-+ |...+....+++|++. | +
T Consensus 41 Km~pe~~e~~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~Iv--I~D~p~~k~kd~l~~~------g---~ 109 (276)
T PF01993_consen 41 KMGPEDVEEVVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIV--ISDAPTKKAKDALEEE------G---F 109 (276)
T ss_dssp --SHHHHHHHHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEE--EEEGGGGGGHHHHHHT------T----
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEE--EcCCCchhhHHHHHhc------C---C
Confidence 345555556665554 245789999885 57788999999999999543 3334433345778763 3 3
Q ss_pred eEEEECCEE-eeccHHHHh----hhhcCChHHHHHhcCc
Q 032368 106 PAVFVGGKL-FGGLDRVMA----THISGDLVPILKEAGA 139 (142)
Q Consensus 106 P~vfI~G~~-IGG~del~~----~~~~g~L~~~L~~~g~ 139 (142)
=.|.+.... ||---|+++ ..-++.+.+.|.-.|+
T Consensus 110 GYIivk~DpMIGArREFLDP~EMa~fNaD~~kVLa~tGa 148 (276)
T PF01993_consen 110 GYIIVKADPMIGARREFLDPVEMALFNADVLKVLAITGA 148 (276)
T ss_dssp EEEEETTS------TTT--HHHHHHHHHHHHHHHHHTTH
T ss_pred cEEEEecCccccccccccCHHHHHHhhhhHHHHHHhhhH
Confidence 345666554 444333322 1114455555655554
No 417
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=21.64 E-value=2.5e+02 Score=21.34 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhCCCCcEEEEeeCCCC-HHHHHHHhhhhhccCCCceeeeEEEECCEE
Q 032368 59 MCHVVKTLLLGHGVNPAVFEVADGDE-AAVLDELSRIDVENGGGIIQFPAVFVGGKL 114 (142)
Q Consensus 59 ~C~~ak~lL~~~gi~~~~i~id~~~~-~~~~~~L~~~~~~~~~g~~tvP~vfI~G~~ 114 (142)
..+.++++|+++++.--.+.+..+.. .++.+.+. .+...+|.+.|..+.
T Consensus 137 ~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~-------~~~~y~p~iiV~NK~ 186 (233)
T cd01896 137 DEKTIKAILREYKIHNADVLIREDITVDDLIDVIE-------GNRVYIPCLYVYNKI 186 (233)
T ss_pred CHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHh-------CCceEeeEEEEEECc
Confidence 56899999999999755555555444 34445442 345678998887764
No 418
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=21.20 E-value=4.1e+02 Score=20.85 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCEEEEEcCCCchHHHHHHHHHhCCCCcEEEE
Q 032368 37 AKSVEKMLVENAVLVLGRPGCCMCHVVKTLLLGHGVNPAVFE 78 (142)
Q Consensus 37 ~~~v~~~~~~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~~~i~ 78 (142)
..+.+++....+++|-|..+ +|.++.-++++.|++..-+.
T Consensus 129 ~~~a~~i~~~~~~iIVTq~f--Hm~RA~~ia~~~Gi~~~~~~ 168 (239)
T PRK10834 129 IVRTRKVFDTNDFIIITQRF--HCERALFIALHMGIQAQCYA 168 (239)
T ss_pred HHHHHHHhCCCCEEEECCHH--HHHHHHHHHHHcCCceEEEe
Confidence 34445566667788877766 89999999999999854444
No 419
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=21.15 E-value=3.4e+02 Score=21.91 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=41.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhCCCCc-EEEEeeCCCC---HHHHHHHhhhhhccCCCceeeeEEEECCE
Q 032368 46 ENAVLVLGRPGCCMCHVVKTLLLGHGVNP-AVFEVADGDE---AAVLDELSRIDVENGGGIIQFPAVFVGGK 113 (142)
Q Consensus 46 ~~~Vvvy~~~~Cp~C~~ak~lL~~~gi~~-~~i~id~~~~---~~~~~~L~~~~~~~~~g~~tvP~vfI~G~ 113 (142)
.+.|.+++..+-.-+--+|.++.+++-+. ..++|+.++- +.+.+.|+. ....| .||+|+=
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~-------~~~kF-IlFcDDL 148 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRA-------RPEKF-ILFCDDL 148 (287)
T ss_pred ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhc-------CCceE-EEEecCC
Confidence 45799999999999999999999987663 6788887754 333343432 22233 6777764
No 420
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=21.06 E-value=99 Score=24.38 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=34.4
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCCchHHHH-HHHHHhCCCCcEEEEeeCC
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGCCMCHVV-KTLLLGHGVNPAVFEVADG 82 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~Cp~C~~a-k~lL~~~gi~~~~i~id~~ 82 (142)
++..++.+.+-..+....|++|---+++-|++| ..+++++|+......||..
T Consensus 189 esT~~aLe~lyprl~~GGiIi~DDY~~~gcr~AvdeF~~~~gi~~~l~~id~~ 241 (248)
T PF05711_consen 189 ESTKDALEFLYPRLSPGGIIIFDDYGHPGCRKAVDEFRAEHGITDPLHPIDWT 241 (248)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEESSTTTHHHHHHHHHHHHHTT--S--EE-SSS
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCCChHHHHHHHHHHHHcCCCCccEEecCc
Confidence 455556666666677788999888778999876 5677888998777777653
No 421
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.36 E-value=2.1e+02 Score=22.63 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=34.0
Q ss_pred ccchHHHHHHHHHhcCCCEEEEEcCCC-chHHHHHHHHHhCCCCc
Q 032368 31 EEADTAAKSVEKMLVENAVLVLGRPGC-CMCHVVKTLLLGHGVNP 74 (142)
Q Consensus 31 ~~~~~~~~~v~~~~~~~~Vvvy~~~~C-p~C~~ak~lL~~~gi~~ 74 (142)
.-...+.+.++++++..+|.++.-+.| ..|..+..++++.++++
T Consensus 53 ~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~ 97 (347)
T cd06340 53 GNPDIGATEAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPF 97 (347)
T ss_pred CCHHHHHHHHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCE
Confidence 345567788899998877777776666 56888899999999885
No 422
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=20.33 E-value=1.4e+02 Score=23.94 Aligned_cols=27 Identities=15% Similarity=0.041 Sum_probs=23.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhCCCCc
Q 032368 48 AVLVLGRPGCCMCHVVKTLLLGHGVNP 74 (142)
Q Consensus 48 ~Vvvy~~~~Cp~C~~ak~lL~~~gi~~ 74 (142)
++.+.|..+.|.-.++.+-|.++|+..
T Consensus 188 RtalVTAR~apah~RvI~TLr~Wgv~v 214 (264)
T PF06189_consen 188 RTALVTARSAPAHERVIRTLRSWGVRV 214 (264)
T ss_pred EEEEEEcCCCchhHHHHHHHHHcCCcH
Confidence 466777788999999999999999975
Done!