BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032371
         (142 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 2   ESHMGQGYKFQPSD-ELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESED 60
           E ++  G++F P+D EL    L  K          I ++  +   +P DL   +   + +
Sbjct: 12  ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALFGARE 70

Query: 61  QACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSK 120
              YFF     KY N +R +R    G WK T  D  +    R  G KK L FY      K
Sbjct: 71  W--YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFY----AGK 124

Query: 121 VP--VKTDWVMHEYHV 134
            P  VKTDW+MHEY +
Sbjct: 125 APRGVKTDWIMHEYRL 140


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 10/130 (7%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+DE L V  L  K     FS   I +I  +   +P  L  ++    ++   YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVP--VK 124
                KY N +R +R   +G WK T  D  I    +  G KK L FY      K P   K
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGTK 132

Query: 125 TDWVMHEYHV 134
           T+W+MHEY +
Sbjct: 133 TNWIMHEYRL 142


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 10/130 (7%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+DE L V  L  K     FS   I +I  +   +P  L  ++    ++   YFF
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 79

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVP--VK 124
                KY N +R +R   +G WK T  D  I    +  G KK L FY      K P   K
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGTK 135

Query: 125 TDWVMHEYHV 134
           T+W+MHEY +
Sbjct: 136 TNWIMHEYRL 145


>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
           Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
           Pneumoniae
          Length = 547

 Score = 26.6 bits (57), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 4   HMGQGYKFQPSDELSVSLLKEK 25
           +MGQ Y F PS E+ +  +K+K
Sbjct: 421 YMGQWYYFAPSGEMKMGWVKDK 442


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,613,449
Number of Sequences: 62578
Number of extensions: 172591
Number of successful extensions: 306
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 4
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)