Query 032371
Match_columns 142
No_of_seqs 118 out of 833
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 21:40:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 5.4E-53 1.8E-57 312.2 11.5 132 2-138 12-144 (174)
2 1ut7_A No apical meristem prot 100.0 1.9E-52 6.6E-57 308.9 12.1 132 2-138 14-146 (171)
3 3nr5_A MAF1, repressor of RNA 40.5 8.6 0.00029 27.4 0.9 35 36-71 119-155 (164)
4 1ldd_A APC2WHB, anaphase promo 23.6 34 0.0012 21.0 1.4 27 5-31 36-63 (74)
5 3vdj_A Circumsporozoite (CS) p 23.1 39 0.0014 20.9 1.6 17 9-25 2-18 (77)
6 3fyr_A Sporulation inhibitor S 16.7 82 0.0028 17.6 1.9 17 13-29 6-23 (48)
7 2cs7_A Pneumococcal histidine 16.0 29 0.00099 20.1 -0.1 7 45-51 12-18 (55)
8 1m5a_B Insulin B chain; alpha 15.1 47 0.0016 16.8 0.5 9 7-15 22-30 (30)
9 1cmb_A Met APO-repressor; DNA- 15.1 1.7E+02 0.0058 18.6 3.3 37 13-55 51-89 (104)
10 2oh5_A Polyhedrin, C-polyhedri 14.3 1.4E+02 0.0048 21.3 3.1 28 85-112 140-168 (248)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=5.4e-53 Score=312.23 Aligned_cols=132 Identities=32% Similarity=0.570 Sum_probs=120.0
Q ss_pred CCCCCCCceEcCCHH-HHHHHHhhhhcCCCCCCCCeeeccCCCCCCccCccccccccCCCceEEEeecCcccccCCCccc
Q 032371 2 ESHMGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVH 80 (142)
Q Consensus 2 ~~~lp~G~rF~PtD~-Li~~YL~~ki~g~~l~~~~I~~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~ 80 (142)
+++|||||||+|||| ||.+||++|+.|.+++..+|+++ |||.+|||+||+.... ++.+||||+++.+++++|.|++
T Consensus 12 ~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~ev-Dvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n 88 (174)
T 3ulx_A 12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN 88 (174)
T ss_dssp TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEEC-CGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeec-ccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence 568999999999999 99999999999999999999999 9999999999998653 4679999999999999999999
Q ss_pred ccccCCeeEeecCcceEeeCCeEEeeEEEEEEEecCCCCCCCcCCCeEEEEEEeCCCC
Q 032371 81 RRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDDP 138 (142)
Q Consensus 81 r~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~fy~~~~~~~~~~~t~W~M~Ey~l~~~~ 138 (142)
|+|++|+||++|++++|.++|.+||+|++|+||.++++++ .+|+|+||||+|.++.
T Consensus 89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g--~kT~WvMhEY~L~~~~ 144 (174)
T 3ulx_A 89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG--VKTDWIMHEYRLADAG 144 (174)
T ss_dssp EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSC--EEEEEEEEEEEECSCC
T ss_pred eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCC--CcCCeEEEEEEeCCCC
Confidence 9999999999999999998899999999999999999888 9999999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.9e-52 Score=308.86 Aligned_cols=132 Identities=32% Similarity=0.546 Sum_probs=118.2
Q ss_pred CCCCCCCceEcCCHH-HHHHHHhhhhcCCCCCCCCeeeccCCCCCCccCccccccccCCCceEEEeecCcccccCCCccc
Q 032371 2 ESHMGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVH 80 (142)
Q Consensus 2 ~~~lp~G~rF~PtD~-Li~~YL~~ki~g~~l~~~~I~~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~ 80 (142)
++.|||||||+|||| ||.+||++|+.|.+++..+|+++ |||.+|||+||+... .++.+||||+++.+++++|.|++
T Consensus 14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~-Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~ 90 (171)
T 1ut7_A 14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN 90 (171)
T ss_dssp SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeec-ccccCChhHhhchhh--cCCccEEEEeccccccCCCCccc
Confidence 468999999999999 99999999999999999999999 999999999999864 35789999999999999999999
Q ss_pred ccccCCeeEeecCcceEeeCCeEEeeEEEEEEEecCCCCCCCcCCCeEEEEEEeCCCC
Q 032371 81 RRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDDP 138 (142)
Q Consensus 81 r~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~fy~~~~~~~~~~~t~W~M~Ey~l~~~~ 138 (142)
|+|++|+||++|++++|..++.+||+|++|+||.++.+++ .+|+|+||||+|.+++
T Consensus 91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g--~kT~WvMhEY~l~~~~ 146 (171)
T 1ut7_A 91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG--TKTNWIMHEYRLIEPS 146 (171)
T ss_dssp EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSC--EEEEEEEEEEEECCCC
T ss_pred ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCC--CcCCeEEEEEEcCCCc
Confidence 9999999999999999999899999999999999999888 9999999999999875
No 3
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=40.48 E-value=8.6 Score=27.42 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=19.6
Q ss_pred eeeccCCCCCCccCcccccc--ccCCCceEEEeecCcc
Q 032371 36 IKDIGHICSLEPEDLATESE--TESEDQACYFFYEPHY 71 (142)
Q Consensus 36 I~~~~Dvy~~~P~~L~~~~~--~~~~~~~wyFF~~~~~ 71 (142)
+.++ |||++.|..-..... ...=...+|||.++.+
T Consensus 119 l~dC-~IYsY~Pd~~~DPf~e~g~lWSfnYFFyNKklK 155 (164)
T 3nr5_A 119 LAEC-DIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLK 155 (164)
T ss_dssp GGGC-EEEEECCCGGGCTTCSCCCSCEEEEEEEETTTT
T ss_pred ccCC-eEEEEcCCCCCCCCCCCCceeeeeeeEEecCcc
Confidence 6778 999999984322221 1111244666665543
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=23.60 E-value=34 Score=20.97 Aligned_cols=27 Identities=4% Similarity=0.067 Sum_probs=21.5
Q ss_pred CCCCceEcC-CHHHHHHHHhhhhcCCCC
Q 032371 5 MGQGYKFQP-SDELSVSLLKEKRLDPHF 31 (142)
Q Consensus 5 lp~G~rF~P-tD~Li~~YL~~ki~g~~l 31 (142)
.|.|+.|+. |++.+..||..++...-+
T Consensus 36 ~~~~~~~~~it~~eL~~fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEGYLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 377899998 778667789999987664
No 5
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=23.11 E-value=39 Score=20.92 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=13.2
Q ss_pred ceEcCCHHHHHHHHhhh
Q 032371 9 YKFQPSDELSVSLLKEK 25 (142)
Q Consensus 9 ~rF~PtD~Li~~YL~~k 25 (142)
+.|-|+++.|..||.+-
T Consensus 2 ~~~~p~~~~i~~~l~ki 18 (77)
T 3vdj_A 2 VEFEPSDKHIKEYLNKI 18 (77)
T ss_dssp CCCSCCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 35889999888888653
No 6
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=16.69 E-value=82 Score=17.64 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=13.3
Q ss_pred CCHH-HHHHHHhhhhcCC
Q 032371 13 PSDE-LSVSLLKEKRLDP 29 (142)
Q Consensus 13 PtD~-Li~~YL~~ki~g~ 29 (142)
=||+ ||..|.+.+-.+-
T Consensus 6 LSDe~LiesY~~A~el~L 23 (48)
T 3fyr_A 6 LSDELLIESYFKATEMNL 23 (48)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred hcHHHHHHHHHHHHHhCC
Confidence 4799 9999988776653
No 7
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=15.98 E-value=29 Score=20.15 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=3.1
Q ss_pred CCccCcc
Q 032371 45 LEPEDLA 51 (142)
Q Consensus 45 ~~P~~L~ 51 (142)
++|.++.
T Consensus 12 F~p~dIv 18 (55)
T 2cs7_A 12 FNASDII 18 (55)
T ss_dssp CCGGGCC
T ss_pred ECHHHhe
Confidence 3444443
No 8
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=15.07 E-value=47 Score=16.79 Aligned_cols=9 Identities=22% Similarity=0.829 Sum_probs=7.1
Q ss_pred CCceEcCCH
Q 032371 7 QGYKFQPSD 15 (142)
Q Consensus 7 ~G~rF~PtD 15 (142)
-||-|+|++
T Consensus 22 RGF~~~p~~ 30 (30)
T 1m5a_B 22 RGFFYTPKA 30 (30)
T ss_dssp GCEEECCCC
T ss_pred CccccCCCC
Confidence 488999974
No 9
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=15.06 E-value=1.7e+02 Score=18.64 Aligned_cols=37 Identities=8% Similarity=0.192 Sum_probs=24.9
Q ss_pred CCHH--HHHHHHhhhhcCCCCCCCCeeeccCCCCCCccCcccccc
Q 032371 13 PSDE--LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESE 55 (142)
Q Consensus 13 PtD~--Li~~YL~~ki~g~~l~~~~I~~~~Dvy~~~P~~L~~~~~ 55 (142)
-|.. |...|| .-..|+|||. +. |+-...|.++|....
T Consensus 51 ATNSELLCEAFL-HA~TGQPLP~----D~-Dl~Kd~~d~iP~~ak 89 (104)
T 1cmb_A 51 ATNSELLCEAFL-HAFTGQPLPD----DA-DLRKERSDEIPEAAK 89 (104)
T ss_dssp CSHHHHHHHHHH-HHHHCCCCCC----GG-GGBTTSCSCSCHHHH
T ss_pred cccHHHHHHHHH-HHhcCCCCCC----ch-hhhhcCCccchHHHH
Confidence 4555 444555 4467999986 34 788888999887643
No 10
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=14.28 E-value=1.4e+02 Score=21.31 Aligned_cols=28 Identities=14% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCeeEeecCc-ceEeeCCeEEeeEEEEEE
Q 032371 85 AGQWKITSED-SQIEASNRLSGTKKFLTF 112 (142)
Q Consensus 85 ~G~Wk~~g~~-~~i~~~g~~iG~k~~l~f 112 (142)
.--|.++|-. +.|..+|+++|+...|..
T Consensus 140 shpweatgikyrki~~dgeivgyshyfel 168 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFEL 168 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEEC
T ss_pred cCCccccCceEEEeeecceEeeeeeeeec
Confidence 4459998864 577788999999988764
Done!