BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032372
MALAQVSASLSLSVSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISPQRKCL
QKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAA
LAVTALVGVLTAVFIFQSASEN

High Scoring Gene Products

Symbol, full name Information P value
SEP1
AT4G34190 		protein from Arabidopsis thaliana 3.9e-21

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032372
        (142 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2124236 - symbol:SEP1 "AT4G34190" species:3702...   248  3.9e-21   1


>TAIR|locus:2124236 [details] [associations]
            symbol:SEP1 "AT4G34190" species:3702 "Arabidopsis
            thaliana" [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009644 "response to high light intensity"
            evidence=IEP;RCA] [GO:0016168 "chlorophyll binding" evidence=TAS]
            [GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006364
            "rRNA processing" evidence=RCA] [GO:0009637 "response to blue
            light" evidence=RCA] [GO:0009657 "plastid organization"
            evidence=RCA] [GO:0009744 "response to sucrose stimulus"
            evidence=RCA] [GO:0009773 "photosynthetic electron transport in
            photosystem I" evidence=RCA] [GO:0010114 "response to red light"
            evidence=RCA] [GO:0010155 "regulation of proton transport"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0010218 "response to far red light" evidence=RCA] [GO:0015995
            "chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] EMBL:CP002687
            GO:GO:0009644 GO:GO:0009535 GO:GO:0016168 InterPro:IPR023329
            SUPFAM:SSF103511 UniGene:At.36272 EMBL:AF133716 EMBL:AY090357
            EMBL:AY088639 EMBL:BT000842 IPI:IPI00530889 RefSeq:NP_567958.1
            UniGene:At.24872 ProteinModelPortal:Q9M7I9 SMR:Q9M7I9 IntAct:Q9M7I9
            PRIDE:Q9M7I9 EnsemblPlants:AT4G34190.1 GeneID:829567
            KEGG:ath:AT4G34190 TAIR:At4g34190 HOGENOM:HOG000243415
            InParanoid:Q9M7I9 OMA:TVEISTG ProtClustDB:CLSN2689754
            Genevestigator:Q9M7I9 Uniprot:Q9M7I9
        Length = 146

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 63/127 (49%), Positives = 78/127 (61%)

Query:    24 KTRTISRLPTSS---H----ARIGTTFATGSPLL-WRISPQRKCLQKATSVTIRCEQGTK 75
             K  TI+  PTS+   H    A I +TFA+GSPLL  ++S  R+   +A SV+IR EQ T+
Sbjct:    21 KLATITN-PTSTCRVHVPQLAGIRSTFASGSPLLPLKLSMTRRGGNRAASVSIRSEQSTE 79

Query:    76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFXXXXXXXXXXXXXXXXXXXXXXXFI 135
             G + LD+WLGR AMVGFAVAI+VEISTGKGLLENF                       FI
Sbjct:    80 GSSGLDIWLGRGAMVGFAVAITVEISTGKGLLENFGVASPLPTVALAVTALVGVLAAVFI 139

Query:   136 FQSASEN 142
             FQS+S+N
Sbjct:   140 FQSSSKN 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142        97   0.00091  102 3  11 22  0.49    29
                                                     29  0.44    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  552 (59 KB)
  Total size of DFA:  107 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.11u 0.16s 10.27t   Elapsed:  00:00:00
  Total cpu time:  10.11u 0.16s 10.27t   Elapsed:  00:00:00
  Start:  Sat May 11 02:55:27 2013   End:  Sat May 11 02:55:27 2013

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