BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032372
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8YQR8|HEMH_NOSS1 Ferrochelatase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hemH
PE=3 SV=1
Length = 388
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
S +VW GR+AM+GF +A+ +E+ TG+GLL GL
Sbjct: 354 SAEVWNGRIAMLGF-IALIIELVTGQGLLHMIGL 386
>sp|Q3MCT9|HEMH_ANAVT Ferrochelatase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=hemH PE=3 SV=1
Length = 388
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
S +VW GR+AM+GF +A+ +E+ TG+GLL GL
Sbjct: 354 SAEVWNGRIAMLGF-IALIIELVTGQGLLHMIGL 386
>sp|P14895|ELI5_HORVU High molecular mass early light-inducible protein HV58,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 231
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 85 GRLAMVGFAVAISVEISTGKGLLENFGLTS 114
GRLAMVGF A+SVE + G GLL+ G+ S
Sbjct: 134 GRLAMVGFVAALSVEAARGGGLLDQVGMWS 163
>sp|P51355|YCF17_PORPU Uncharacterized protein ycf17 OS=Porphyra purpurea GN=ycf17 PE=3
SV=1
Length = 48
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLL 107
+S + W GR AM+GF I +E+ TGKGLL
Sbjct: 12 DSAETWNGRFAMIGFMAVIFIELVTGKGLL 41
>sp|Q1XDD2|YCF17_PORYE Uncharacterized protein ycf17 OS=Porphyra yezoensis GN=ycf17 PE=3
SV=1
Length = 48
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTS 114
+S + W GR AM+GF I +E+ TG+GLL G+ S
Sbjct: 12 DSAETWNGRFAMIGFISVIFIEVVTGQGLLYLIGMMS 48
>sp|B0JRN7|HEMH_MICAN Ferrochelatase OS=Microcystis aeruginosa (strain NIES-843) GN=hemH
PE=3 SV=1
Length = 387
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
+VW GRLAM+GF +AI +E+ TG+G L GL
Sbjct: 356 EVWNGRLAMIGF-LAIIIELITGQGPLHFVGL 386
>sp|Q3ALP2|HEMH_SYNSC Ferrochelatase OS=Synechococcus sp. (strain CC9605) GN=hemH PE=3
SV=1
Length = 391
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GRLAMVGF+ A +E+ +G+G L GL
Sbjct: 357 NSSEVWNGRLAMVGFS-AFLLELISGQGPLHALGL 390
>sp|B2J9P0|HEMH_NOSP7 Ferrochelatase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=hemH PE=3 SV=1
Length = 388
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
S +VW GR+AM+GF +A+ +E+ TG G L GL
Sbjct: 354 SAEVWNGRIAMLGF-IALIIELITGHGFLHMIGL 386
>sp|A5GS98|HEMH_SYNR3 Ferrochelatase OS=Synechococcus sp. (strain RCC307) GN=hemH PE=3
SV=1
Length = 387
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GRLAM+GF+ A VE+ +G G L GL
Sbjct: 353 NSSEVWNGRLAMLGFS-AFLVELISGHGPLHALGL 386
>sp|Q02060|PSBS_SPIOL Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea
GN=PSBS PE=1 SV=1
Length = 274
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQS 138
S ++++GRLA +GFA ++ EI TGKG L + + +P + L L VF F +
Sbjct: 201 SNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVL---LNVVFFFIA 257
Query: 139 A 139
A
Sbjct: 258 A 258
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 58 KCLQKATSVTIRCEQGTKGR-------NSLDVWLGRLAMVGFAVAISVEISTGKGLLENF 110
K +K ++ E G G ++++GR+AM+GFA ++ E TGKG+L
Sbjct: 69 KAPKKVEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQL 128
Query: 111 GLTSPLP 117
L + +P
Sbjct: 129 NLETGIP 135
>sp|Q0I8L9|HEMH_SYNS3 Ferrochelatase OS=Synechococcus sp. (strain CC9311) GN=hemH PE=3
SV=1
Length = 391
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GRLAM+GF+ A +E+ +G G L GL
Sbjct: 357 NSSEVWNGRLAMIGFS-AFLLELISGHGPLHAVGL 390
>sp|P11432|ELI_PEA Early light-induced protein, chloroplastic OS=Pisum sativum PE=2
SV=1
Length = 196
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 85 GRLAMVGFAVAISVEISTGKGLLENF 110
GRLAM+GF A+ VEI+ G+GL E
Sbjct: 103 GRLAMIGFVAAMGVEIAKGQGLSEQL 128
>sp|Q5N2B2|HEMH_SYNP6 Ferrochelatase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=hemH PE=3 SV=1
Length = 387
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
+VW GR+AM+GF +A+ VE+ TG+G L GL
Sbjct: 356 EVWNGRIAMLGF-LALLVELLTGRGPLHALGL 386
>sp|Q31S00|HEMH_SYNE7 Ferrochelatase OS=Synechococcus elongatus (strain PCC 7942) GN=hemH
PE=3 SV=1
Length = 387
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
+VW GR+AM+GF +A+ VE+ TG+G L GL
Sbjct: 356 EVWNGRIAMLGF-LALLVELLTGRGPLHALGL 386
>sp|B7K399|HEMH_CYAP8 Ferrochelatase OS=Cyanothece sp. (strain PCC 8801) GN=hemH PE=3
SV=1
Length = 387
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
+VW GRLAMVGF +A+ +E+ +G G L GL
Sbjct: 356 EVWNGRLAMVGF-IALLIELISGHGPLHFVGL 386
>sp|Q7U5G0|HEMH_SYNPX Ferrochelatase OS=Synechococcus sp. (strain WH8102) GN=hemH PE=3
SV=1
Length = 391
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GRLAM+GF+ A +E+ +G G L GL
Sbjct: 357 NSSEVWNGRLAMLGFS-AFLLELISGHGPLHALGL 390
>sp|P14897|ELI9_HORVU Low molecular mass early light-inducible protein HV90,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 172
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 85 GRLAMVGFAVAISVEISTGKGLLENFG 111
GRLAMVGF A++VE G GLL G
Sbjct: 76 GRLAMVGFVTALAVEAGRGDGLLSQLG 102
>sp|P14896|ELI6_HORVU Low molecular mass early light-inducible protein HV60,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 167
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 85 GRLAMVGFAVAISVEISTGKGLLENFG 111
GRLAMVGF A++VE G GLL G
Sbjct: 71 GRLAMVGFVTALAVEAGRGDGLLSQLG 97
>sp|P54225|HEMH_SYNY3 Ferrochelatase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=hemH PE=3 SV=1
Length = 387
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
+VW GRLAM+GF +A+ VE+ +G+G L GL
Sbjct: 356 EVWNGRLAMLGF-IALLVELISGQGPLHFVGL 386
>sp|Q9FPP4|PSBS_SOLSG Photosystem II 22 kDa protein, chloroplastic OS=Solanum
sogarandinum GN=PSBS PE=2 SV=1
Length = 276
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLP 117
++++GR+AM+GFA ++ E TGKG+L L + +P
Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIP 136
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLP 117
++++GRLA +G A +I EI TGKG L + +P
Sbjct: 206 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVP 242
>sp|P54773|PSBS_SOLLC Photosystem II 22 kDa protein, chloroplastic OS=Solanum
lycopersicum GN=PSBS PE=3 SV=1
Length = 276
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLP 117
++++GR+AM+GFA ++ E TGKG+L L + +P
Sbjct: 100 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIP 136
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLP 117
++++GRLA +G A +I EI TGKG L + +P
Sbjct: 206 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVP 242
>sp|B7KGB9|HEMH_CYAP7 Ferrochelatase OS=Cyanothece sp. (strain PCC 7424) GN=hemH PE=3
SV=1
Length = 387
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
+VW GRLAM+GF +A+ +E+ +G G L GL
Sbjct: 356 EVWNGRLAMIGF-IALLIELISGHGPLHFVGL 386
>sp|Q9XF91|PSBS_ARATH Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=PSBS PE=1 SV=1
Length = 265
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLP 117
++++GR+AM+GFA ++ E TGKG+L L + +P
Sbjct: 90 ELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIP 126
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIF 136
++++GRLA +G A ++ EI TGKG L + + +P + L+ V A F F
Sbjct: 194 ELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNV--AFFFF 247
>sp|Q9SMB4|PSBS_TOBAC Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum
GN=PSBS PE=2 SV=1
Length = 274
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLP 117
++++GR+AM+GFA ++ E TGKG+L L + +P
Sbjct: 98 ELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIP 134
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIFQSA 139
++++GRLA +G A +I EI TGKG L + +P + L + VF F +A
Sbjct: 204 ELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNI---VFFFVAA 259
>sp|Q10WR6|HEMH_TRIEI Ferrochelatase OS=Trichodesmium erythraeum (strain IMS101) GN=hemH
PE=3 SV=1
Length = 387
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
+VW GRLAMVGF +A+ +E+ TG G L GL
Sbjct: 356 EVWNGRLAMVGF-MALLLELITGYGPLHFAGL 386
>sp|A5GJF5|HEMH_SYNPW Ferrochelatase OS=Synechococcus sp. (strain WH7803) GN=hemH PE=3
SV=1
Length = 391
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GRLAM+GF+ +E+ +G G L GL
Sbjct: 357 NSSEVWNGRLAMLGFS-GFLLELISGHGPLHALGL 390
>sp|P27516|CBR_DUNBA Carotene biosynthesis-related protein CBR, chloroplastic
OS=Dunaliella bardawil GN=CBR PE=1 SV=1
Length = 172
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFG 111
++ GRLAM+GF A+ E+STG+ +L G
Sbjct: 78 EIINGRLAMLGFVAALGAELSTGESVLTQLG 108
>sp|Q8DGU6|HEMH_THEEB Ferrochelatase OS=Thermosynechococcus elongatus (strain BP-1)
GN=hemH PE=3 SV=2
Length = 388
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 83 WLGRLAMVGFAVAISVEISTGKGLLENFGL 112
W GRLAM+GF +A+ +E+ +G+G L GL
Sbjct: 359 WNGRLAMLGF-LALMIELISGQGPLHMLGL 387
>sp|P07898|PGCA_CHICK Aggrecan core protein OS=Gallus gallus GN=ACAN PE=1 SV=2
Length = 2109
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 85 GRLAMVGF--------AVAISVEISTGKGLLENFGLTSPLPTAALAVTALVGVLTAVFIF 136
G L M GF A VE+++G E GLTS PT +L T LV V+T +
Sbjct: 1166 GVLEMSGFPGGAVESSGEASGVEVTSGLASGEESGLTSGFPTVSLVDTTLVEVVTQTSVA 1225
Query: 137 QSASE 141
Q E
Sbjct: 1226 QEVGE 1230
>sp|O78425|YCF17_GUITH Uncharacterized protein ycf17 OS=Guillardia theta GN=ycf17 PE=3
SV=1
Length = 53
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 83 WLGRLAMVGFAVAISVEISTGKGLLE 108
W GRLAM+ F + I VE T K +L+
Sbjct: 23 WNGRLAMISFLLIICVEFITNKNVLD 48
>sp|A2BQ06|HEMH_PROMS Ferrochelatase OS=Prochlorococcus marinus (strain AS9601) GN=hemH
PE=3 SV=1
Length = 391
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GR+AM+ F V + +E+ +G G L G+
Sbjct: 357 NSSEVWNGRVAMIIFLV-LFIELISGSGPLHKLGI 390
>sp|A3PBP9|HEMH_PROM0 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9301) GN=hemH
PE=3 SV=1
Length = 391
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GR+AM+ F V + +E+ +G G L G+
Sbjct: 357 NSSEVWNGRVAMIIFLV-LFIELISGSGPLHKLGI 390
>sp|A8G3P0|HEMH_PROM2 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9215) GN=hemH
PE=3 SV=1
Length = 391
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GR+AM+ F V + +E+ +G G L G+
Sbjct: 357 NSSEVWNGRVAMIIFLV-LFIELISGSGPLHKLGI 390
>sp|Q7V6C6|HEMH_PROMM Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9313) GN=hemH
PE=3 SV=1
Length = 391
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
S + W GR+AM+GFA A +E+ +G G L GL
Sbjct: 358 SSEAWNGRIAMLGFA-AFLLELISGHGPLHAIGL 390
>sp|A2C7Q7|HEMH_PROM3 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9303) GN=hemH
PE=3 SV=1
Length = 391
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
S + W GR+AM+GFA A +E+ +G G L GL
Sbjct: 358 SSEAWNGRIAMLGFA-AFLLELISGHGPLHAIGL 390
>sp|Q7V2F5|HEMH_PROMP Ferrochelatase OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=hemH PE=3 SV=1
Length = 391
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GR+AM+ F + + +E+ +G G L G+
Sbjct: 357 NSSEVWNGRVAMIVFLI-LFIELISGSGPLHKLGI 390
>sp|A2BVI7|HEMH_PROM5 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9515) GN=hemH
PE=3 SV=1
Length = 391
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GR+AM+ F + + +E+ +G G L G+
Sbjct: 357 NSSEVWNGRVAMIVFLI-LFIELISGSGPLHKLGI 390
>sp|Q31C09|HEMH_PROM9 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9312) GN=hemH
PE=3 SV=1
Length = 391
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GR+AM+ F V + +E+ G G L G+
Sbjct: 357 NSSEVWNGRVAMIVFLV-LFIELIAGSGPLHRLGI 390
>sp|P48367|YCF17_CYAPA Uncharacterized protein ycf17 OS=Cyanophora paradoxa GN=ycf17 PE=3
SV=1
Length = 49
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 81 DVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
+ W GRLAM+GF A+ E TG+G L G+
Sbjct: 17 ENWNGRLAMLGFIAALLTESLTGQGTLHFLGI 48
>sp|A9BEE9|HEMH_PROM4 Ferrochelatase OS=Prochlorococcus marinus (strain MIT 9211) GN=hemH
PE=3 SV=1
Length = 391
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112
NS +VW GR+AM F + + +E+ G G L GL
Sbjct: 357 NSAEVWNGRVAMFVFIICL-LELVIGNGPLHYLGL 390
>sp|P25443|RS2_YEAST 40S ribosomal protein S2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPS2 PE=1 SV=3
Length = 254
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 14 VSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWRISP 55
V D + S+ KTRT+ ++ IG T+ +P LW P
Sbjct: 193 VEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLTPNLWAEQP 234
>sp|Q01931|DS22_CRAPL Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma
plantagineum GN=DSP-22 PE=2 SV=1
Length = 199
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 85 GRLAMVGFAVAISVEISTGKGLLE---NFGLTSPLPTAALAVTA 125
GR AM+GF A+ VE++TG+ + N G+ L T+A+ V A
Sbjct: 104 GRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLA 147
>sp|A4Q9S2|RECF_CORGB DNA replication and repair protein RecF OS=Corynebacterium
glutamicum (strain R) GN=recF PE=3 SV=1
Length = 394
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 52 RISPQRKCLQKATSVTIR----CEQGTKGRNSLDVWLGRLAMVGFAV 94
++ QR L K ++ +R E+G ++LD W G+LA +G V
Sbjct: 156 KVLKQRNALLKTATIALRRGYGTEEGAAALSTLDTWDGQLARLGAEV 202
>sp|Q0RUR2|G6PI4_RHOSR Glucose-6-phosphate isomerase 4 OS=Rhodococcus sp. (strain RHA1)
GN=pgi4 PE=3 SV=1
Length = 559
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 83 WLGRLAMVGFAVAISVEISTGKGLLENF--GL--------TSPLPTAALAVTALVGVLTA 132
W+G VG AV ++V ++ GK E F G +PL A A+ AL+GV +
Sbjct: 267 WVGGRYSVGSAVGLAVMVAIGKDSFEEFLDGFHTIDRHFADTPLEDNAPAILALLGVWYS 326
Query: 133 VFI 135
F
Sbjct: 327 NFF 329
>sp|Q6M8X7|RECF_CORGL DNA replication and repair protein RecF OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=recF PE=3 SV=1
Length = 394
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 52 RISPQRKCLQKATSVTIR----CEQGTKGRNSLDVWLGRLAMVGFAV 94
++ QR L K ++ +R E+G ++LD W G+LA +G V
Sbjct: 156 KVLKQRNALLKTATIALRRGYGTEEGAAALSTLDTWDGQLARLGAEV 202
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1
SV=1
Length = 265
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 14 VSDAFAFSSAKTRTISRLPTSSHARIGTTFATGSPLLWR 52
V D + S KTRT+ ++ I TFA +P LWR
Sbjct: 206 VDDVYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWR 244
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,720,364
Number of Sequences: 539616
Number of extensions: 1455647
Number of successful extensions: 4340
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 4301
Number of HSP's gapped (non-prelim): 66
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)