Query 032372
Match_columns 142
No_of_seqs 150 out of 595
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 13:14:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00014 light-harvesting-like 99.4 9E-14 2E-18 116.1 4.8 58 55-112 123-194 (250)
2 PHA02337 putative high light i 99.4 1.7E-13 3.6E-18 84.8 3.7 31 77-107 2-32 (35)
3 PLN00084 photosystem II subuni 99.3 4.1E-12 8.8E-17 103.2 4.8 44 76-119 134-178 (214)
4 PLN00100 light-harvesting comp 98.2 5.5E-07 1.2E-11 75.7 2.3 35 78-112 161-195 (246)
5 PF00504 Chloroa_b-bind: Chlor 98.2 3.4E-06 7.4E-11 64.2 6.0 29 77-105 29-57 (156)
6 PLN00147 light-harvesting comp 98.2 1.5E-06 3.2E-11 73.2 3.5 34 79-112 202-235 (252)
7 PLN00089 fucoxanthin-chlorophy 98.1 2.4E-06 5.2E-11 70.0 3.2 30 79-108 179-208 (209)
8 PLN00101 Photosystem I light-h 98.1 1.3E-06 2.9E-11 73.4 1.5 34 79-112 202-235 (250)
9 PLN00099 light-harvesting comp 98.0 2.8E-06 6E-11 71.2 2.7 35 78-112 187-222 (243)
10 PF00504 Chloroa_b-bind: Chlor 98.0 1.8E-06 4E-11 65.7 1.1 25 76-100 132-156 (156)
11 PLN00025 photosystem II light 98.0 4.3E-06 9.4E-11 70.8 2.9 35 78-112 207-241 (262)
12 PLN00097 photosystem I light h 98.0 4.9E-06 1.1E-10 69.9 2.9 34 79-112 199-232 (244)
13 PLN00098 light-harvesting comp 98.0 5.8E-06 1.3E-10 70.2 3.2 33 79-111 217-249 (267)
14 PLN00048 photosystem I light h 97.9 6.3E-06 1.4E-10 69.7 2.7 34 78-111 211-244 (262)
15 PLN00171 photosystem light-ha 97.9 1.1E-05 2.3E-10 70.4 3.2 34 79-112 275-308 (324)
16 PLN00187 photosystem II light- 97.8 1.3E-05 2.9E-10 68.7 3.3 34 79-112 237-270 (286)
17 PLN00120 fucoxanthin-chlorophy 97.7 2.6E-05 5.7E-10 63.6 3.3 26 79-104 170-195 (202)
18 PLN00101 Photosystem I light-h 97.6 3.7E-05 7.9E-10 64.9 2.4 30 78-107 92-121 (250)
19 PLN00048 photosystem I light h 97.6 3.7E-05 8.1E-10 65.1 2.4 32 78-109 86-117 (262)
20 PLN00170 photosystem II light- 97.4 6E-05 1.3E-09 63.8 1.8 34 78-112 222-255 (255)
21 PLN00098 light-harvesting comp 97.4 0.00012 2.6E-09 62.3 2.7 31 78-108 101-131 (267)
22 PLN00170 photosystem II light- 97.4 0.00028 6.2E-09 59.7 4.9 32 78-109 96-127 (255)
23 PLN00025 photosystem II light 97.2 0.00043 9.4E-09 58.8 4.7 29 78-106 92-120 (262)
24 PLN00097 photosystem I light h 97.2 0.00048 1E-08 58.0 4.6 31 77-107 82-112 (244)
25 PLN00187 photosystem II light- 97.1 0.00063 1.4E-08 58.5 4.7 27 78-104 134-160 (286)
26 PLN00147 light-harvesting comp 97.0 0.0004 8.7E-09 58.7 2.4 30 77-106 83-112 (252)
27 PLN00171 photosystem light-ha 96.8 0.00065 1.4E-08 59.4 2.2 30 78-107 149-178 (324)
28 PLN00100 light-harvesting comp 96.7 0.0022 4.8E-08 54.2 4.6 26 78-103 74-99 (246)
29 PLN00089 fucoxanthin-chlorophy 96.6 0.0018 3.9E-08 53.2 3.4 31 76-106 74-104 (209)
30 PLN00099 light-harvesting comp 96.6 0.0048 1E-07 51.9 5.5 27 77-103 82-108 (243)
31 PLN00120 fucoxanthin-chlorophy 94.0 0.013 2.9E-07 47.9 -0.4 24 77-100 64-87 (202)
32 PLN02449 ferrochelatase 93.9 0.035 7.6E-07 50.8 2.2 23 87-109 463-485 (485)
33 PF11003 DUF2842: Protein of u 36.1 74 0.0016 21.6 3.9 56 86-141 3-60 (62)
34 PF09323 DUF1980: Domain of un 22.2 2.7E+02 0.0058 21.7 5.4 52 87-140 5-58 (182)
35 MTH00007 COX1 cytochrome c oxi 21.8 99 0.0021 28.7 3.3 92 44-137 221-319 (511)
No 1
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=99.44 E-value=9e-14 Score=116.06 Aligned_cols=58 Identities=31% Similarity=0.376 Sum_probs=52.5
Q ss_pred cchhhhhhccceeeeeccCCCC--------------CCchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372 55 PQRKCLQKATSVTIRCEQGTKG--------------RNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112 (142)
Q Consensus 55 ~~~~~~~~aa~~~v~~E~~~~~--------------~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~ 112 (142)
+.|||.++...-+.-+|+.-|+ .+.+|++|||+|||||++++++|++||+|+++|+|.
T Consensus 123 ~rRK~LE~nPe~s~n~epv~FdtSiiPWWaW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 123 VRRKWLEDNPETSSNDEPVLFDTSIIPWWAWVKRFHLPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred HHHHHHhhCccccCCCCCceeecccccHHHHHHhccCchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 6788999988888888888764 578999999999999999999999999999999984
No 2
>PHA02337 putative high light inducible protein
Probab=99.42 E-value=1.7e-13 Score=84.81 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=28.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEISTGKGLL 107 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil 107 (142)
.+.+|+||||+||+||++++..|+.|||++-
T Consensus 2 t~~aE~~NGRlAMiGfv~~~~~e~~tGq~ip 32 (35)
T PHA02337 2 TPEAEIFNGWLAMIGFVAAVGAYATTGQIIP 32 (35)
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHhCCCCC
Confidence 5679999999999999999999999999874
No 3
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=99.27 E-value=4.1e-12 Score=103.19 Aligned_cols=44 Identities=39% Similarity=0.634 Sum_probs=40.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHh-CcchhhhhccCCChhHH
Q 032372 76 GRNSLDVWLGRLAMVGFAVAISVEIST-GKGLLENFGLTSPLPTA 119 (142)
Q Consensus 76 ~~~~aE~~NGRlAMiGf~~~l~~E~~T-G~gil~q~g~~~~~p~~ 119 (142)
.....|+||||+||+||+.+++.|++| |||+|+|+++++++|..
T Consensus 134 EqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvPi~ 178 (214)
T PLN00084 134 EQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVPVI 178 (214)
T ss_pred hccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCcch
Confidence 345689999999999999999999999 99999999999999954
No 4
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=98.23 E-value=5.5e-07 Score=75.71 Aligned_cols=35 Identities=37% Similarity=0.390 Sum_probs=32.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~ 112 (142)
...|+.|||+||++|++.++++.+||+|.+++++.
T Consensus 161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~~ 195 (246)
T PLN00100 161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA 195 (246)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 36899999999999999999999999999999864
No 5
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.21 E-value=3.4e-06 Score=64.18 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=26.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCcc
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEISTGKG 105 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~g 105 (142)
...+|++|||+||+||++.++.|+.++.+
T Consensus 29 ~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 29 YREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred HHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 45799999999999999999999999864
No 6
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=98.17 E-value=1.5e-06 Score=73.23 Aligned_cols=34 Identities=26% Similarity=0.223 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112 (142)
Q Consensus 79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~ 112 (142)
..|+.|||+||+++++.+++|++||+|+++++..
T Consensus 202 ~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~ 235 (252)
T PLN00147 202 LKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLT 235 (252)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4699999999999999999999999999999854
No 7
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=98.09 E-value=2.4e-06 Score=69.98 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=27.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCcchhh
Q 032372 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLE 108 (142)
Q Consensus 79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~ 108 (142)
..|+.|||+||+|+.+.++.|.+||+|+++
T Consensus 179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 179 DKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 359999999999999999999999999864
No 8
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=98.07 E-value=1.3e-06 Score=73.44 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112 (142)
Q Consensus 79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~ 112 (142)
..|+.||||||++|++.++++.+||+|.++++..
T Consensus 202 ~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~ 235 (250)
T PLN00101 202 EKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQ 235 (250)
T ss_pred HHHHhhcchHHHHHhhHhheehccCCChHHHHHH
Confidence 4799999999999999999999999999999843
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=98.03 E-value=2.8e-06 Score=71.21 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=31.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHH-HHhCcchhhhhcc
Q 032372 78 NSLDVWLGRLAMVGFAVAISVE-ISTGKGLLENFGL 112 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E-~~TG~gil~q~g~ 112 (142)
...|+.|||+||++|++.+++| .+||+|+++++..
T Consensus 187 k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~ 222 (243)
T PLN00099 187 KVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAT 222 (243)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHH
Confidence 3579999999999999999999 5799999999864
No 10
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=98.01 E-value=1.8e-06 Score=65.65 Aligned_cols=25 Identities=32% Similarity=0.296 Sum_probs=21.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHH
Q 032372 76 GRNSLDVWLGRLAMVGFAVAISVEI 100 (142)
Q Consensus 76 ~~~~aE~~NGRlAMiGf~~~l~~E~ 100 (142)
....+|++|||+|||||++.+++|.
T Consensus 132 ~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 132 FMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567999999999999999999873
No 11
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=97.98 E-value=4.3e-06 Score=70.81 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=32.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~ 112 (142)
...|+.|||+||+++++.+++|++||+|.++++..
T Consensus 207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~ 241 (262)
T PLN00025 207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 241 (262)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHH
Confidence 36799999999999999999999999999999864
No 12
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=97.96 E-value=4.9e-06 Score=69.89 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=31.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112 (142)
Q Consensus 79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~ 112 (142)
..|+.|||+||++|++.++++.+||+|.++++..
T Consensus 199 ~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~ 232 (244)
T PLN00097 199 LKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFS 232 (244)
T ss_pred HHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHH
Confidence 4899999999999999999999999999999853
No 13
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=97.95 E-value=5.8e-06 Score=70.18 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFG 111 (142)
Q Consensus 79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g 111 (142)
..|+.|||+||+++++.++++.+||+|+++++.
T Consensus 217 ~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~ 249 (267)
T PLN00098 217 TKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLM 249 (267)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHH
Confidence 489999999999999999999999999999984
No 14
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=97.91 E-value=6.3e-06 Score=69.73 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=31.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFG 111 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g 111 (142)
...|+.|||+||+++++.+++|++||+|.++++.
T Consensus 211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~ 244 (262)
T PLN00048 211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLL 244 (262)
T ss_pred HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHH
Confidence 3578999999999999999999999999999984
No 15
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=97.86 E-value=1.1e-05 Score=70.36 Aligned_cols=34 Identities=32% Similarity=0.312 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112 (142)
Q Consensus 79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~ 112 (142)
..|+.|||+||+|+++.++.|.+||+|.++++..
T Consensus 275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~ 308 (324)
T PLN00171 275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVD 308 (324)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 4699999999999999999999999999999743
No 16
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=97.83 E-value=1.3e-05 Score=68.70 Aligned_cols=34 Identities=35% Similarity=0.415 Sum_probs=31.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112 (142)
Q Consensus 79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~ 112 (142)
..|+.|||+||+++++.++.|.+||+|.++++..
T Consensus 237 ~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~ 270 (286)
T PLN00187 237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNWAT 270 (286)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 5799999999999999999999999999998854
No 17
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=97.72 E-value=2.6e-05 Score=63.58 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=24.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCc
Q 032372 79 SLDVWLGRLAMVGFAVAISVEISTGK 104 (142)
Q Consensus 79 ~aE~~NGRlAMiGf~~~l~~E~~TG~ 104 (142)
..|+.|||+||||+.+.++.|.++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 56999999999999999999999996
No 18
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=97.59 E-value=3.7e-05 Score=64.85 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=28.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLL 107 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil 107 (142)
..+|+.|||+||+|+++.++.|++|++|++
T Consensus 92 r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 92 VQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 467999999999999999999999999886
No 19
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=97.59 E-value=3.7e-05 Score=65.10 Aligned_cols=32 Identities=41% Similarity=0.440 Sum_probs=28.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchhhh
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLEN 109 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q 109 (142)
..+|+.|||+||+|+++.++.|+++++|++.+
T Consensus 86 r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~~ 117 (262)
T PLN00048 86 AYGEVINGRFAMLGAAGAIAPEILGKAGLIPQ 117 (262)
T ss_pred HHHHhhcchHHHHHHhhHHHHHHhccCCcccc
Confidence 46799999999999999999999999888753
No 20
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=97.44 E-value=6e-05 Score=63.81 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=29.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhcc
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGL 112 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~ 112 (142)
...|+.|||+||++|++.+++- .||+|.|+++|+
T Consensus 222 k~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~~ 255 (255)
T PLN00170 222 KLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALGL 255 (255)
T ss_pred HHHHHhhhHHHHHHHHhHheee-ccCCCchhhhcC
Confidence 3579999999999999777655 899999999885
No 21
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=97.36 E-value=0.00012 Score=62.26 Aligned_cols=31 Identities=23% Similarity=0.254 Sum_probs=28.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchhh
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLE 108 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~ 108 (142)
..+|+.|||+||+|+++.++.|++++.|++.
T Consensus 101 r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 101 AQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 5789999999999999999999999988765
No 22
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=97.36 E-value=0.00028 Score=59.74 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=28.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchhhh
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLEN 109 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q 109 (142)
..+|+.|||+||+|+++.++.|+++|..+++.
T Consensus 96 r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~a 127 (255)
T PLN00170 96 REAELIHGRWAMAAVVGIFVGQAWSGIPWFEA 127 (255)
T ss_pred HHHHhhccHHHHHHHHhhhhHHHccCCChhhC
Confidence 46799999999999999999999999876653
No 23
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=97.24 E-value=0.00043 Score=58.79 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=26.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcch
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGL 106 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gi 106 (142)
..+|+.|||+||+|+++.++.|++++.|+
T Consensus 92 re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 92 RELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred HHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 46799999999999999999999997765
No 24
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=97.21 E-value=0.00048 Score=58.05 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=28.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEISTGKGLL 107 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil 107 (142)
...+|+.|||+||+|+++.++.|++++.|+.
T Consensus 82 ~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~ 112 (244)
T PLN00097 82 FVQAELMHARWAMLGLAGCVAPELLTKIGMA 112 (244)
T ss_pred HHHHHHhcchHHHHHHhhhhHHHHhcCCCcc
Confidence 4578999999999999999999999988764
No 25
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=97.13 E-value=0.00063 Score=58.51 Aligned_cols=27 Identities=37% Similarity=0.391 Sum_probs=24.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCc
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGK 104 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~ 104 (142)
..+|++|||+||+|+++.++.|+.+|.
T Consensus 134 REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 134 RECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 577999999999999999999999875
No 26
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=97.02 E-value=0.0004 Score=58.67 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=26.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCcch
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEISTGKGL 106 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gi 106 (142)
...+|+.|||+||+|+++.++.|+++..|+
T Consensus 83 ~r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 83 YVQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred HHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 357899999999999999999999987764
No 27
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=96.83 E-value=0.00065 Score=59.39 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=26.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLL 107 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil 107 (142)
..+|+.|||+||+|+++.++.|++++.+..
T Consensus 149 reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 149 FNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred HHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 357999999999999999999999877654
No 28
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=96.73 E-value=0.0022 Score=54.18 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=23.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhC
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTG 103 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG 103 (142)
..+|+.|||+||+|+++.++.|+++.
T Consensus 74 r~aEl~hGR~AMla~~G~~~~E~~~~ 99 (246)
T PLN00100 74 QEAELMNGRWAMAATAGILFTDAVGL 99 (246)
T ss_pred HHHHhhcchHHHHHHhhhhHHHHhcc
Confidence 46899999999999999999999753
No 29
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=96.63 E-value=0.0018 Score=53.20 Aligned_cols=31 Identities=23% Similarity=0.118 Sum_probs=26.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhCcch
Q 032372 76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGL 106 (142)
Q Consensus 76 ~~~~aE~~NGRlAMiGf~~~l~~E~~TG~gi 106 (142)
+...+|+.|||+||+++++.++.|.++.-|.
T Consensus 74 ~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 74 WFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 3457999999999999999999999875543
No 30
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=96.57 E-value=0.0048 Score=51.94 Aligned_cols=27 Identities=15% Similarity=0.008 Sum_probs=23.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhC
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEISTG 103 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG 103 (142)
...+|+.|||+||+|+++.++.|+++.
T Consensus 82 ~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 82 YKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred HHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 356899999999999999999999754
No 31
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=93.97 E-value=0.013 Score=47.88 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=21.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEI 100 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~ 100 (142)
...+|+.|||+||+++++.++.|.
T Consensus 64 ~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 64 LRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHHhhcccHHHHhhccceeecc
Confidence 357999999999999999999996
No 32
>PLN02449 ferrochelatase
Probab=93.92 E-value=0.035 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhCcchhhh
Q 032372 87 LAMVGFAVAISVEISTGKGLLEN 109 (142)
Q Consensus 87 lAMiGf~~~l~~E~~TG~gil~q 109 (142)
+||+||++.++.|++||+|.||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCCC
Confidence 99999999999999999999985
No 33
>PF11003 DUF2842: Protein of unknown function (DUF2842); InterPro: IPR021265 This bacterial family of proteins have no known function.
Probab=36.12 E-value=74 Score=21.59 Aligned_cols=56 Identities=16% Similarity=0.026 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhhhccCC--ChhHHHHHHHHHHHHHHHHHHhhccCC
Q 032372 86 RLAMVGFAVAISVEISTGKGLLENFGLTS--PLPTAALAVTALVGVLTAVFIFQSASE 141 (142)
Q Consensus 86 RlAMiGf~~~l~~E~~TG~gil~q~g~~~--~~p~~~l~v~~l~~~as~vpif~g~s~ 141 (142)
|++|++++..+.....-.-.+.+.+-.+. -......++++++=+.=+.|++++..+
T Consensus 3 ~ig~v~ll~~l~vY~~~a~~l~~~~~~~~~~~~~l~~Yvv~G~~WvlP~~~li~Wm~~ 60 (62)
T PF11003_consen 3 LIGLVLLLVGLPVYAVLAVTLADWLLARWPWWVQLIYYVVLGLLWVLPAKPLIRWMER 60 (62)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788888888888877777666552111 111234455666556667777777654
No 34
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=22.24 E-value=2.7e+02 Score=21.71 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHhCcchhhhhccCCChh--HHHHHHHHHHHHHHHHHHhhccC
Q 032372 87 LAMVGFAVAISVEISTGKGLLENFGLTSPLP--TAALAVTALVGVLTAVFIFQSAS 140 (142)
Q Consensus 87 lAMiGf~~~l~~E~~TG~gil~q~g~~~~~p--~~~l~v~~l~~~as~vpif~g~s 140 (142)
+.++||...++.=..||+ +...+. +.-.+ .++.++..++++..++-+++...
T Consensus 5 liL~~~~~l~~~l~~sG~-i~~YI~-P~~~~~~~~a~i~l~ilai~q~~~~~~~~~ 58 (182)
T PF09323_consen 5 LILLGFGILLFYLILSGK-ILLYIH-PRYIPLLYFAAILLLILAIVQLWRWFRPKR 58 (182)
T ss_pred HHHHHHHHHHHHHHHhCc-HHHHhC-ccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 567888888888888887 333332 11122 33334444556666777776653
No 35
>MTH00007 COX1 cytochrome c oxidase subunit I; Validated
Probab=21.78 E-value=99 Score=28.67 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=49.7
Q ss_pred eccCcceeee-----ccchhhhhhccceeeeeccCCCCCCchhHHHHHHHHHHHHHHHHH--HHHhCcchhhhhccCCCh
Q 032372 44 ATGSPLLWRI-----SPQRKCLQKATSVTIRCEQGTKGRNSLDVWLGRLAMVGFAVAISV--EISTGKGLLENFGLTSPL 116 (142)
Q Consensus 44 ~~G~pl~~~~-----~~~~~~~~~aa~~~v~~E~~~~~~~~aE~~NGRlAMiGf~~~l~~--E~~TG~gil~q~g~~~~~ 116 (142)
.-|+|++.|. ++..-..--.....+-+|-.......+| .-||.+|+-....+.. -.+=++-.+. .|++...
T Consensus 221 ~ggdp~l~q~LFWffGHPeVYi~ilPa~g~~~~ii~~~~~~~~-~~~~~~~i~a~~~i~~l~~~Vw~HHmf~-~g~~~~~ 298 (511)
T MTH00007 221 GGGDPILYQHLFWFFGHPEVYILILPGFGAISHIVTHYAGKLE-PFGTLGMIYAMLGIGVLGFIVWAHHMFT-VGMDVDT 298 (511)
T ss_pred CCCCceeehhhhhhccchhhHHHHHHHHHHHHHhHHHhhCCcc-hhHHHHHHHHHHHHHHhhccccccceec-cCCChhH
Confidence 4578999886 5666655544444555555543332445 5599999876544422 1111221121 3444444
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 032372 117 PTAALAVTALVGVLTAVFIFQ 137 (142)
Q Consensus 117 p~~~l~v~~l~~~as~vpif~ 137 (142)
..++...+-++++-|.+.+|.
T Consensus 299 ~~~f~~~T~~iaiPtgikvF~ 319 (511)
T MTH00007 299 RAYFTAATMIIAVPTGIKVFS 319 (511)
T ss_pred HHHHHHHHHHHHhhhhhHHHH
Confidence 445555566667777766663
Done!