Query 032372
Match_columns 142
No_of_seqs 150 out of 595
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 21:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 98.5 8.6E-08 3E-12 78.0 3.8 33 79-111 178-210 (232)
2 3pl9_A Chlorophyll A-B binding 98.4 2E-07 6.9E-12 76.9 4.1 34 78-111 194-227 (243)
3 2wsc_2 LHCA2, type II chloroph 98.3 9.5E-08 3.2E-12 79.7 -0.2 36 76-111 216-251 (269)
4 2wsc_3 LHCA3, type II chloroph 98.3 1.2E-07 4E-12 79.4 -0.0 37 77-113 224-260 (276)
5 2wsc_1 AT3G54890, LHCA1; photo 98.2 3E-07 1E-11 75.5 0.3 38 77-114 187-225 (241)
6 2wsc_4 Chlorophyll A-B binding 97.9 2.4E-06 8.1E-11 70.4 0.8 35 78-113 201-235 (251)
7 2wsc_4 Chlorophyll A-B binding 97.5 6.4E-06 2.2E-10 67.9 -1.9 33 76-108 90-122 (251)
8 3pl9_A Chlorophyll A-B binding 97.3 0.00029 9.9E-09 58.1 5.8 28 77-104 92-119 (243)
9 2wsc_2 LHCA2, type II chloroph 97.2 0.00013 4.4E-09 60.8 2.8 32 76-107 101-132 (269)
10 2wsc_3 LHCA3, type II chloroph 96.9 1.3E-05 4.3E-10 67.1 -6.6 31 77-107 99-129 (276)
11 2bhw_A Chlorophyll A-B binding 96.9 0.00065 2.2E-08 55.2 3.6 28 78-105 62-89 (232)
12 2wsc_1 AT3G54890, LHCA1; photo 93.7 0.0023 7.7E-08 52.5 -4.3 27 77-103 83-109 (241)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=98.46 E-value=8.6e-08 Score=78.04 Aligned_cols=33 Identities=39% Similarity=0.437 Sum_probs=31.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372 79 SLDVWLGRLAMVGFAVAISVEISTGKGLLENFG 111 (142)
Q Consensus 79 ~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g 111 (142)
.+|++|||+||+||++.++.|.+||+|+++|+.
T Consensus 178 ~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~ 210 (232)
T 2bhw_A 178 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 210 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHH
T ss_pred HhhhhccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence 679999999999999999999999999999984
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=98.38 E-value=2e-07 Score=76.93 Aligned_cols=34 Identities=38% Similarity=0.436 Sum_probs=32.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFG 111 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g 111 (142)
..+|++|||+||+||++.++.|++||+|+++|+.
T Consensus 194 r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~ 227 (243)
T 3pl9_A 194 QLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWV 227 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3689999999999999999999999999999985
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=98.27 E-value=9.5e-08 Score=79.66 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=33.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhc
Q 032372 76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFG 111 (142)
Q Consensus 76 ~~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g 111 (142)
....+|++|||+||+||++.++.|.+||+|+++++.
T Consensus 216 ~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 216 ELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp TSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 346799999999999999999999999999999987
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=98.25 E-value=1.2e-07 Score=79.38 Aligned_cols=37 Identities=27% Similarity=0.213 Sum_probs=30.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhccC
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLT 113 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~~ 113 (142)
...+|++|||+||+||++.++.|++||+|+++|+...
T Consensus 224 ~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~H 260 (276)
T 2wsc_3 224 LKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDH 260 (276)
T ss_dssp -CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC----
T ss_pred HHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHh
Confidence 3578999999999999999999999999999998643
No 5
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=98.15 E-value=3e-07 Score=75.54 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=33.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH-HHhCcchhhhhccCC
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVE-ISTGKGLLENFGLTS 114 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E-~~TG~gil~q~g~~~ 114 (142)
...+|++|||+||+||++.++.| .+||+|++++++..-
T Consensus 187 ~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~ 225 (241)
T 2wsc_1 187 LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHL 225 (241)
T ss_dssp SCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSC
T ss_pred HHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHh
Confidence 45789999999999999999999 589999999987543
No 6
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=97.88 E-value=2.4e-06 Score=70.45 Aligned_cols=35 Identities=31% Similarity=0.366 Sum_probs=32.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcchhhhhccC
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKGLLENFGLT 113 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~q~g~~ 113 (142)
...|+.|||| |+||++.+++|.+||+++++++...
T Consensus 201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~h 235 (251)
T 2wsc_4 201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQH 235 (251)
T ss_dssp TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTT
T ss_pred HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHH
Confidence 4689999999 9999999999999999999998643
No 7
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=97.52 E-value=6.4e-06 Score=67.91 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=29.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhCcchhh
Q 032372 76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGLLE 108 (142)
Q Consensus 76 ~~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil~ 108 (142)
+...+|++|||+||+||++.++.|+++++|++.
T Consensus 90 ~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~ 122 (251)
T 2wsc_4 90 WFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122 (251)
T ss_dssp TTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence 346899999999999999999999999998874
No 8
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=97.33 E-value=0.00029 Score=58.12 Aligned_cols=28 Identities=32% Similarity=0.283 Sum_probs=25.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCc
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEISTGK 104 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~ 104 (142)
...+|++|||+||+|+++.++.|+.+|-
T Consensus 92 ~ReaELkHGRwAMLAvlG~lvpE~l~g~ 119 (243)
T 3pl9_A 92 FRECELIHGRWAMLATLGALTVEGLTGI 119 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhhhcchhHHHHHHHHHhHHhhcCc
Confidence 3468999999999999999999999864
No 9
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=97.24 E-value=0.00013 Score=60.77 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=28.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372 76 GRNSLDVWLGRLAMVGFAVAISVEISTGKGLL 107 (142)
Q Consensus 76 ~~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil 107 (142)
+...+|+.|||+||+|+++.++.|++++.|++
T Consensus 101 ~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 101 WNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp TTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred HHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 35689999999999999999999999988765
No 10
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=96.89 E-value=1.3e-05 Score=67.10 Aligned_cols=31 Identities=35% Similarity=0.379 Sum_probs=28.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhCcchh
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEISTGKGLL 107 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG~gil 107 (142)
...+|++|||+||+|+++.++.|++++.|++
T Consensus 99 ~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 99 LAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp HHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred HHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 3569999999999999999999999998876
No 11
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=96.87 E-value=0.00065 Score=55.16 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhCcc
Q 032372 78 NSLDVWLGRLAMVGFAVAISVEISTGKG 105 (142)
Q Consensus 78 ~~aE~~NGRlAMiGf~~~l~~E~~TG~g 105 (142)
..+|++|||+||+|+++.++.|+++..|
T Consensus 62 ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 62 RELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 5799999999999999999999987433
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=93.70 E-value=0.0023 Score=52.52 Aligned_cols=27 Identities=15% Similarity=0.012 Sum_probs=23.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhC
Q 032372 77 RNSLDVWLGRLAMVGFAVAISVEISTG 103 (142)
Q Consensus 77 ~~~aE~~NGRlAMiGf~~~l~~E~~TG 103 (142)
...+|+.|||+||+++++.++.|+++.
T Consensus 83 ~r~~El~hgR~AMla~~G~~~~e~~~~ 109 (241)
T 2wsc_1 83 YKESELIHCRWAMLAVPGILVPEALGY 109 (241)
T ss_dssp SHHHHHHHHHHHTTTSTTSSSTTCCCC
T ss_pred HHHHHHhhchhHHhhhhcccchhhccC
Confidence 357999999999999999999998643
Done!