Query 032373
Match_columns 142
No_of_seqs 108 out of 398
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 13:15:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04387 PTPLA: Protein tyrosi 100.0 2.1E-55 4.6E-60 337.7 8.0 137 1-137 25-164 (164)
2 PLN02838 3-hydroxyacyl-CoA deh 100.0 2.2E-54 4.7E-59 345.5 9.1 136 1-136 79-218 (221)
3 KOG3187 Protein tyrosine phosp 100.0 1.5E-49 3.2E-54 316.6 8.3 141 1-141 80-223 (223)
4 COG5198 Ptpl Protein tyrosine 100.0 5.9E-38 1.3E-42 241.7 8.0 125 1-137 76-201 (209)
5 PF07297 DPM2: Dolichol phosph 67.5 5.4 0.00012 27.3 2.4 48 82-131 27-76 (78)
6 PF01151 ELO: GNS1/SUR4 family 62.3 45 0.00098 26.8 7.3 30 31-60 150-179 (250)
7 PF11044 TMEMspv1-c74-12: Plec 37.9 62 0.0013 20.1 3.3 14 102-115 8-21 (49)
8 PF12669 P12: Virus attachment 34.7 47 0.001 21.2 2.6 19 114-132 9-27 (58)
9 COG3114 CcmD Heme exporter pro 30.8 99 0.0021 20.6 3.7 17 117-133 29-45 (67)
10 PRK13454 F0F1 ATP synthase sub 30.6 73 0.0016 24.5 3.6 41 94-134 20-68 (181)
11 COG4392 Predicted membrane pro 27.0 55 0.0012 23.8 2.1 45 26-76 7-52 (107)
12 PRK13460 F0F1 ATP synthase sub 22.1 1.6E+02 0.0035 22.2 4.1 13 122-134 41-53 (173)
13 PF05915 DUF872: Eukaryotic pr 21.4 2.1E+02 0.0045 20.7 4.3 26 105-130 78-103 (115)
14 TIGR00597 rad10 DNA repair pro 20.5 9.5 0.00021 27.8 -2.9 16 27-42 96-111 (112)
15 PF09799 Transmemb_17: Predict 20.1 76 0.0017 22.3 1.8 30 24-53 36-66 (109)
No 1
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=100.00 E-value=2.1e-55 Score=337.69 Aligned_cols=137 Identities=44% Similarity=0.831 Sum_probs=131.8
Q ss_pred CceehhhhhhhheeccccccCCchHHHHHHHHHHhhhhhhhhhHHHHhhCCCCchhhhcccccccccccchhhHHHHHHH
Q 032373 1 MQWCGRTLFFLVTAREIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPPWLTYLRYTMFIPLYPIGVLGEMLLLY 80 (142)
Q Consensus 1 ~QV~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i~ 80 (142)
+||+||++++|++++..||++.++++++|++|||++|+|||+||+++++|.+|++|+|||||+|+||||+|++||+.+++
T Consensus 25 ~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p~~L~WLRYs~FivLYPlG~~~E~~~~~ 104 (164)
T PF04387_consen 25 MQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVPYWLTWLRYSAFIVLYPLGILSELLLIY 104 (164)
T ss_pred HHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCCchHHHHHHHhhHhhccchHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccchhhhcccccccc---CccchHHHHHHHHHHHhhhHHHHHHHHHHHHHcccccchh
Q 032373 81 QAFPYMKEKNIFANFFA---ILPFSYYNVVQVIFVMYPFAWIKLYSHMLKQRGSKLGKRQ 137 (142)
Q Consensus 81 ~alp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~y~pg~~~ly~hMl~QRkk~l~~~~ 137 (142)
+|+|++++++.++.+|| |++|++.+++++++++|+||+|++|+||++||||+++|+|
T Consensus 105 ~al~~~~~~~~~~~~~pn~~n~~~~~~~~~~~~l~~y~pg~~~ly~hM~~qRrK~l~~~~ 164 (164)
T PF04387_consen 105 RALPYIKETKRYSVRMPNSWNFSFSYYYFLIFVLLLYIPGFPFLYSHMLKQRRKKLGKKK 164 (164)
T ss_pred HhCcccccCCeeeeecCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999 6667777889999999999999999999999999997653
No 2
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=100.00 E-value=2.2e-54 Score=345.54 Aligned_cols=136 Identities=30% Similarity=0.594 Sum_probs=127.4
Q ss_pred CceehhhhhhhheeccccccCCchHHHHHHHHHHhhhhhhhhhHHHH-hhCCCCchhhhcccccccccccchhhHHHHHH
Q 032373 1 MQWCGRTLFFLVTAREIVQVQDHPSLFITFLAWCLIEVIRYPFYALN-TIGACPPWLTYLRYTMFIPLYPIGVLGEMLLL 79 (142)
Q Consensus 1 ~QV~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~-~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i 79 (142)
+||+||++++|+|++..||+++++.++.|++|||++|+||||||+++ +.|.+|++|+|||||+|+||||+|+.||+.+|
T Consensus 79 ~QV~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~i 158 (221)
T PLN02838 79 PQIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLI 158 (221)
T ss_pred HHHHHHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhccceecchHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999997 55999999999999999999999999999999
Q ss_pred HHhccchhhhcccccccc---CccchHHHHHHHHHHHhhhHHHHHHHHHHHHHcccccch
Q 032373 80 YQAFPYMKEKNIFANFFA---ILPFSYYNVVQVIFVMYPFAWIKLYSHMLKQRGSKLGKR 136 (142)
Q Consensus 80 ~~alp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~y~pg~~~ly~hMl~QRkk~l~~~ 136 (142)
|+|+|++++++.++.+|| |++|++.+++++++++|+||+|+||+||++||||+++++
T Consensus 159 ~~al~~~~~~~~~s~~~Pn~~n~sf~~~~~l~~~l~~YiPg~~~ly~hM~~QRkK~l~~k 218 (221)
T PLN02838 159 YIALPYMKASEKYCLRMPNKWNFSFDYFYASILVLAIYVPGSPHMYSYMLGQRKKALSKS 218 (221)
T ss_pred HHhchhhhcccccchhcCcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999 445555567889999999999999999999999999643
No 3
>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=1.5e-49 Score=316.59 Aligned_cols=141 Identities=38% Similarity=0.714 Sum_probs=133.5
Q ss_pred CceehhhhhhhheeccccccCCchHHHHHHHHHHhhhhhhhhhHHHHhhCCCCchhhhcccccccccccchhhHHHHHHH
Q 032373 1 MQWCGRTLFFLVTAREIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPPWLTYLRYTMFIPLYPIGVLGEMLLLY 80 (142)
Q Consensus 1 ~QV~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i~ 80 (142)
+||.||++++|++++..++++.++++..++.||+++|+|||+||+++++|..|++++|||||+|++|||+|++||+.+++
T Consensus 80 ~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i~ 159 (223)
T KOG3187|consen 80 FQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGVLPKLLTWLRYTLFILLYPIGITSELLTLY 159 (223)
T ss_pred eeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHhhhhhheeeecceehhhHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccchhhhcccccccc---CccchHHHHHHHHHHHhhhHHHHHHHHHHHHHcccccchhhhhc
Q 032373 81 QAFPYMKEKNIFANFFA---ILPFSYYNVVQVIFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 141 (142)
Q Consensus 81 ~alp~~~~~~~~s~~mP---~~~f~~~~~~~~~l~~y~pg~~~ly~hMl~QRkk~l~~~~~k~k 141 (142)
+|+|++++++.+|++|| |++||+.+|+++++++|+||+|++|+||.+||||.++++++|||
T Consensus 160 ~al~~~~~~~~~sv~~pn~~n~~f~~~~fL~i~ml~Yipgf~~l~~hm~~QRkk~l~~~r~~~~ 223 (223)
T KOG3187|consen 160 AALPAAGETERFSVVMPNKLNISFDFFSFLWIVMLLYIPGFYQLYSHMLKQRKKILKKKRKKKK 223 (223)
T ss_pred HHHHHhcccceeEEEcCccccchhHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhcccccccCC
Confidence 99999999999999999 55666667788889999999999999999999999988776653
No 4
>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=241.66 Aligned_cols=125 Identities=30% Similarity=0.491 Sum_probs=107.5
Q ss_pred CceehhhhhhhheeccccccCCchHHHHHHHHHHhhhhhhhhhHHHHhhCCCCchhhhcccccccccccchhhHHHHHHH
Q 032373 1 MQWCGRTLFFLVTAREIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPPWLTYLRYTMFIPLYPIGVLGEMLLLY 80 (142)
Q Consensus 1 ~QV~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i~ 80 (142)
+||.||++++|||+++.-.+-+++.++.+.+|||++|++||.||++++-| .|..|+|||||+|.+|||+|+.+|+.|++
T Consensus 76 ~Qv~SRl~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~lng-~p~~l~~lRYNlFlilyPiG~~sE~~~~~ 154 (209)
T COG5198 76 MQVISRLFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRLNG-IPNTLRVLRYNLFLILYPIGFVSEMYCLR 154 (209)
T ss_pred HHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhhhhhhhhcchHHHHHHHHHH
Confidence 69999999999999665555459999999999999999999999999866 89999999999999999999999999999
Q ss_pred HhccchhhhccccccccCccchHH-HHHHHHHHHhhhHHHHHHHHHHHHHcccccchh
Q 032373 81 QAFPYMKEKNIFANFFAILPFSYY-NVVQVIFVMYPFAWIKLYSHMLKQRGSKLGKRQ 137 (142)
Q Consensus 81 ~alp~~~~~~~~s~~mP~~~f~~~-~~~~~~l~~y~pg~~~ly~hMl~QRkk~l~~~~ 137 (142)
.+..-.+.. | ++. -.+.+++.+|+|||++||+||++||||..+.++
T Consensus 155 ~~~naa~~~--~---------Sllk~vl~~~ml~YiPGf~~lf~HMlaQRkk~~K~~r 201 (209)
T COG5198 155 ALYNAAGKI--F---------SLLKVVLPIVMLLYIPGFIFLFSHMLAQRKKSRKVKR 201 (209)
T ss_pred HHHHHHHHH--H---------HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 987654441 1 222 345678899999999999999999999985433
No 5
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=67.52 E-value=5.4 Score=27.34 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=26.3
Q ss_pred hccchhhhc-ccccccc-CccchHHHHHHHHHHHhhhHHHHHHHHHHHHHcc
Q 032373 82 AFPYMKEKN-IFANFFA-ILPFSYYNVVQVIFVMYPFAWIKLYSHMLKQRGS 131 (142)
Q Consensus 82 alp~~~~~~-~~s~~mP-~~~f~~~~~~~~~l~~y~pg~~~ly~hMl~QRkk 131 (142)
-+|++++.+ .+++.+| .++...+.++.......+ |. ++-..|+|++||
T Consensus 27 llPFvd~d~~i~~~F~Pr~yAi~lP~~lll~~~~~v-g~-f~g~vmik~~~k 76 (78)
T PF07297_consen 27 LLPFVDEDHPIHSFFPPREYAIILPIFLLLLGLSGV-GT-FLGYVMIKSKKK 76 (78)
T ss_pred HhcccCCCchHHHcCCCHHHHHHHHHHHHHHHHHHH-HH-HHHHHHhhcccc
Confidence 567777764 3555666 565555554333333222 22 345578887774
No 6
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=62.34 E-value=45 Score=26.81 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=21.2
Q ss_pred HHHHhhhhhhhhhHHHHhhCCCCchhhhcc
Q 032373 31 LAWCLIEVIRYPFYALNTIGACPPWLTYLR 60 (142)
Q Consensus 31 ~aWsi~EviRY~yY~~~~~~~~p~~L~WLR 60 (142)
+.=+..-++-|.||+++.+|.......|=|
T Consensus 150 ~~N~~VH~iMY~YY~l~a~g~~~~~~~~k~ 179 (250)
T PF01151_consen 150 ALNSFVHVIMYSYYFLSALGIRKVPRWWKK 179 (250)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHHHH
Confidence 444778999999999998886433344434
No 7
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=37.93 E-value=62 Score=20.06 Aligned_cols=14 Identities=7% Similarity=0.074 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHhh
Q 032373 102 SYYNVVQVIFVMYP 115 (142)
Q Consensus 102 ~~~~~~~~~l~~y~ 115 (142)
-|+...++.+.+|+
T Consensus 8 iFsvvIil~If~~i 21 (49)
T PF11044_consen 8 IFSVVIILGIFAWI 21 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 8
>PF12669 P12: Virus attachment protein p12 family
Probab=34.69 E-value=47 Score=21.18 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=12.7
Q ss_pred hhhHHHHHHHHHHHHHccc
Q 032373 114 YPFAWIKLYSHMLKQRGSK 132 (142)
Q Consensus 114 y~pg~~~ly~hMl~QRkk~ 132 (142)
...+++.+..+++|++|+-
T Consensus 9 ~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 9 LAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 3334455678999998873
No 9
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=30.76 E-value=99 Score=20.58 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHcccc
Q 032373 117 AWIKLYSHMLKQRGSKL 133 (142)
Q Consensus 117 g~~~ly~hMl~QRkk~l 133 (142)
..-.+..|-++|||+.|
T Consensus 29 ~l~~l~v~sv~qrr~iL 45 (67)
T COG3114 29 PLAVLVVHSVLQRRAIL 45 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34467889999999999
No 10
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=30.56 E-value=73 Score=24.48 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=22.6
Q ss_pred ccccCccch-H----HHHHHHHHHHhhhHHHH---HHHHHHHHHccccc
Q 032373 94 NFFAILPFS-Y----YNVVQVIFVMYPFAWIK---LYSHMLKQRGSKLG 134 (142)
Q Consensus 94 ~~mP~~~f~-~----~~~~~~~l~~y~pg~~~---ly~hMl~QRkk~l~ 134 (142)
-.||.++++ | -++++.++++|+....+ =...++.+|++...
T Consensus 20 ~gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~ 68 (181)
T PRK13454 20 PGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTIT 68 (181)
T ss_pred CCCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458855543 2 23344444444433222 25688899998883
No 11
>COG4392 Predicted membrane protein [Function unknown]
Probab=26.96 E-value=55 Score=23.76 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhhhhhhhHHHH-hhCCCCchhhhcccccccccccchhhHHH
Q 032373 26 LFITFLAWCLIEVIRYPFYALN-TIGACPPWLTYLRYTMFIPLYPIGVLGEM 76 (142)
Q Consensus 26 ~~~l~~aWsi~EviRY~yY~~~-~~~~~p~~L~WLRYt~FivLYPlGv~~E~ 76 (142)
..+.+.++.+|-+.||.+..+. ..+-+|.+..||+|. |.++.+-.
T Consensus 7 ll~Ilgmg~VT~l~R~L~l~~~~~~~LP~~v~~~L~fv------P~a~ltAL 52 (107)
T COG4392 7 LLVILGMGAVTYLPRMLPLILLLKLRLPPWVRRFLSFV------PVAILTAL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhhc------cHHHHHHH
Confidence 3567789999999999999884 466666677888863 55555443
No 12
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=22.09 E-value=1.6e+02 Score=22.17 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=10.6
Q ss_pred HHHHHHHHccccc
Q 032373 122 YSHMLKQRGSKLG 134 (142)
Q Consensus 122 y~hMl~QRkk~l~ 134 (142)
...++.+|++...
T Consensus 41 i~~~l~~R~~~I~ 53 (173)
T PRK13460 41 ILKALDERASGVQ 53 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 6788899998873
No 13
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.43 E-value=2.1e+02 Score=20.72 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHc
Q 032373 105 NVVQVIFVMYPFAWIKLYSHMLKQRG 130 (142)
Q Consensus 105 ~~~~~~l~~y~pg~~~ly~hMl~QRk 130 (142)
-++++.+++.+||++.++--...=|.
T Consensus 78 ~llilG~L~fIPG~Y~~~i~y~a~rg 103 (115)
T PF05915_consen 78 ALLILGILCFIPGFYHTRIAYYAWRG 103 (115)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 46788888999999987755554443
No 14
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.51 E-value=9.5 Score=27.83 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhhhhhh
Q 032373 27 FITFLAWCLIEVIRYP 42 (142)
Q Consensus 27 ~~l~~aWsi~EviRY~ 42 (142)
.++++|||.-|..||.
T Consensus 96 ~TLilaws~eEaa~Yl 111 (112)
T TIGR00597 96 CTLILAWSFEEAARYL 111 (112)
T ss_pred cEEEEECCHHHHHHhh
Confidence 5678999999999984
No 15
>PF09799 Transmemb_17: Predicted membrane protein; InterPro: IPR019184 This entry represents a 100 amino acid region from a family of proteins that is predicted to be a transmembrane region but its function is not known.
Probab=20.14 E-value=76 Score=22.26 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHhhhhhhhhh-HHHHhhCCCC
Q 032373 24 PSLFITFLAWCLIEVIRYPF-YALNTIGACP 53 (142)
Q Consensus 24 ~~~~~l~~aWsi~EviRY~y-Y~~~~~~~~p 53 (142)
..-..+.+.|+++|++|.-- |.-|+.-+.|
T Consensus 36 ~~~~~~l~l~~~~E~~RL~lG~~GNL~e~~~ 66 (109)
T PF09799_consen 36 VLEVALLFLWFVIEIIRLYLGYKGNLTEKVP 66 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 44466789999999999754 3335543433
Done!