Query 032373
Match_columns 142
No_of_seqs 108 out of 398
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 21:42:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kpa_A ARNO(375-400); hydrolas 17.3 20 0.00068 18.9 -0.6 14 123-136 7-20 (26)
2 4b19_A PEPA1; toxin, toxin apo 10.9 1.3E+02 0.0046 16.1 1.6 14 119-132 17-30 (30)
3 2a1i_A DNA excision repair pro 10.2 17 0.00058 26.6 -2.9 17 27-43 113-129 (146)
4 3im4_C Dual specificity A kina 9.3 1.2E+02 0.0041 17.7 1.1 9 31-39 17-25 (45)
5 1s99_A YKOF; thiamin-binding p 8.8 1.1E+02 0.0037 23.3 1.0 33 65-97 119-151 (200)
6 3rfr_C PMOC; membrane, oxidore 6.7 7.3E+02 0.025 19.5 4.9 57 78-134 33-93 (256)
7 2db7_A Hairy/enhancer-OF-split 6.3 1.7E+02 0.0057 18.1 0.9 13 30-42 23-35 (64)
8 3si5_X Protein CASC5; BUBR1-bl 5.8 1.3E+02 0.0045 15.2 0.1 8 69-76 2-9 (24)
9 2igp_A Retinoblastoma-associat 5.2 4.5E+02 0.015 17.9 2.6 19 22-41 100-118 (120)
10 1e8o_B SRP14, signal recogniti 5.1 4.6E+02 0.016 17.6 2.6 17 119-135 79-95 (106)
No 1
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=17.33 E-value=20 Score=18.86 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHHHHcccccch
Q 032373 123 SHMLKQRGSKLGKR 136 (142)
Q Consensus 123 ~hMl~QRkk~l~~~ 136 (142)
-+|++.|||++..+
T Consensus 7 Ydml~~RKkKi~~~ 20 (26)
T 2kpa_A 7 YEMLAARKKRISVK 20 (26)
T ss_dssp HHHHTCTHHHHHCH
T ss_pred HHHHHHHHHHhccc
Confidence 38999999988543
No 2
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=10.94 E-value=1.3e+02 Score=16.11 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHccc
Q 032373 119 IKLYSHMLKQRGSK 132 (142)
Q Consensus 119 ~~ly~hMl~QRkk~ 132 (142)
.-+|+|-++.|.|+
T Consensus 17 valF~hWL~~r~~k 30 (30)
T 4b19_A 17 IAFFSYWLSRRNTK 30 (30)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCC
Confidence 35789999999864
No 3
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=10.17 E-value=17 Score=26.62 Aligned_cols=17 Identities=35% Similarity=0.383 Sum_probs=14.3
Q ss_pred HHHHHHHHhhhhhhhhh
Q 032373 27 FITFLAWCLIEVIRYPF 43 (142)
Q Consensus 27 ~~l~~aWsi~EviRY~y 43 (142)
+++++|||.-|.-||.=
T Consensus 113 ~TLiLawS~eEaa~Yle 129 (146)
T 2a1i_A 113 CTLILAWSPEEAGRYLE 129 (146)
T ss_dssp CEEEEESSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHH
Confidence 45788999999999963
No 4
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=9.28 E-value=1.2e+02 Score=17.73 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=6.9
Q ss_pred HHHHhhhhh
Q 032373 31 LAWCLIEVI 39 (142)
Q Consensus 31 ~aWsi~Evi 39 (142)
+||-++|+|
T Consensus 17 MAWqIA~MI 25 (45)
T 3im4_C 17 LAWKIAKMI 25 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 688888876
No 5
>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB: 1sbr_A* 1s7h_A
Probab=8.78 E-value=1.1e+02 Score=23.32 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=26.5
Q ss_pred cccccchhhHHHHHHHHhccchhhhcccccccc
Q 032373 65 IPLYPIGVLGEMLLLYQAFPYMKEKNIFANFFA 97 (142)
Q Consensus 65 ivLYPlGv~~E~~~i~~alp~~~~~~~~s~~mP 97 (142)
+-|||+|..-=|-.|+..+...++.+.+.-+..
T Consensus 119 fslYpmg~~~ym~~I~~~i~~a~~~g~~~~s~h 151 (200)
T 1s99_A 119 FALYPMNEPDYMGLIMEAVDIAKAQGTFVQGVH 151 (200)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHHTTCEEEEET
T ss_pred EEEEeCCCccHHHHHHHHHHHHHHcCcccCCcc
Confidence 459999999999999999999998766544333
No 6
>3rfr_C PMOC; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_C
Probab=6.68 E-value=7.3e+02 Score=19.52 Aligned_cols=57 Identities=7% Similarity=0.031 Sum_probs=36.3
Q ss_pred HHHHhccchhhhccccccccCccchHHHH----HHHHHHHhhhHHHHHHHHHHHHHccccc
Q 032373 78 LLYQAFPYMKEKNIFANFFAILPFSYYNV----VQVIFVMYPFAWIKLYSHMLKQRGSKLG 134 (142)
Q Consensus 78 ~i~~alp~~~~~~~~s~~mP~~~f~~~~~----~~~~l~~y~pg~~~ly~hMl~QRkk~l~ 134 (142)
.+|...-.++..-.++-.|-..+..|+.+ +..-+++-+..+-.++.++.|-|.+.+.
T Consensus 33 ~~y~~~r~Yqq~faw~~GLDs~~PeF~~yWm~ll~~e~~l~~~~~~~~~g~lWkTRdr~~~ 93 (256)
T 3rfr_C 33 VFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVD 93 (256)
T ss_dssp HHHHHHHHHHHHHHTTTSSCTTSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCT
T ss_pred HHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHheeecCcchh
Confidence 34444445555444444455455566643 4555556666778899999999999983
No 7
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=6.34 E-value=1.7e+02 Score=18.12 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=10.2
Q ss_pred HHHHHhhhhhhhh
Q 032373 30 FLAWCLIEVIRYP 42 (142)
Q Consensus 30 ~~aWsi~EviRY~ 42 (142)
-+.=|+.||.||.
T Consensus 23 Gf~eC~~EV~rfL 35 (64)
T 2db7_A 23 GFRECLAEVARYL 35 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4556899999985
No 8
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=5.80 E-value=1.3e+02 Score=15.22 Aligned_cols=8 Identities=38% Similarity=0.655 Sum_probs=4.5
Q ss_pred cchhhHHH
Q 032373 69 PIGVLGEM 76 (142)
Q Consensus 69 PlGv~~E~ 76 (142)
|+|..+|-
T Consensus 2 ~~~~ssek 9 (24)
T 3si5_X 2 PLGSSSEN 9 (26)
T ss_pred CCccchhh
Confidence 55665553
No 9
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=5.18 E-value=4.5e+02 Score=17.87 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=13.3
Q ss_pred CchHHHHHHHHHHhhhhhhh
Q 032373 22 DHPSLFITFLAWCLIEVIRY 41 (142)
Q Consensus 22 ~~~~~~~l~~aWsi~EviRY 41 (142)
.+|-..+-.+.| ++|++||
T Consensus 100 HsWp~~L~~L~W-Lvel~~~ 118 (120)
T 2igp_A 100 HTWPHIVAALVW-LIDCIKI 118 (120)
T ss_dssp TTHHHHHHHHHH-HHHHHHH
T ss_pred ccHHHHHHHHHH-HHHHHHh
Confidence 456677778888 4577776
No 10
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=5.12 E-value=4.6e+02 Score=17.57 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHcccccc
Q 032373 119 IKLYSHMLKQRGSKLGK 135 (142)
Q Consensus 119 ~~ly~hMl~QRkk~l~~ 135 (142)
..-|...++-----|.+
T Consensus 79 ~~~Y~~v~K~~M~gLKk 95 (106)
T 1e8o_B 79 QMAYSNLLRANMDGLKK 95 (106)
T ss_dssp HHHHHHHHHHHCCCCC-
T ss_pred HHHHHHHHHhcccccCc
Confidence 34444444444444443
Done!