Query 032373
Match_columns 142
No_of_seqs 108 out of 398
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 21:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032373.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032373hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 27.9 21 0.0015 17.3 2.1 16 24-39 6-21 (27)
2 d1s99a_ d.58.48.2 (A:) Putativ 16.2 22 0.0016 25.3 1.0 31 64-94 110-140 (189)
3 d2a1ia1 c.52.1.20 (A:99-227) D 9.7 8.4 0.00061 26.0 -2.9 16 27-42 96-111 (129)
4 d1k1va_ a.37.1.1 (A:) Mafg {Mo 9.6 37 0.0027 18.2 0.4 10 126-135 29-38 (41)
5 d2db7a1 a.273.1.1 (A:3-57) Hai 9.6 43 0.0032 19.0 0.7 14 29-42 15-28 (55)
6 d1l8na2 d.92.2.2 (A:4-142) alp 5.0 74 0.0054 20.4 0.1 6 57-62 5-10 (139)
7 d1h41a2 d.92.2.2 (A:5-151) alp 3.6 1.1E+02 0.0082 19.7 0.2 6 57-62 6-11 (147)
8 d1kuqa_ a.16.1.2 (A:) Ribosoma 3.4 1.8E+02 0.013 17.3 1.0 12 122-133 53-64 (84)
9 d1qyra_ c.66.1.24 (A:) High le 3.4 1.4E+02 0.01 21.1 0.5 15 121-135 197-211 (252)
10 d1igqa_ b.34.1.3 (A:) Transcri 3.4 1.1E+02 0.0082 17.1 -0.0 13 49-61 18-32 (54)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=27.92 E-value=21 Score=17.30 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHhhhhh
Q 032373 24 PSLFITFLAWCLIEVI 39 (142)
Q Consensus 24 ~~~~~l~~aWsi~Evi 39 (142)
|...+.++.||++-++
T Consensus 6 wv~llvvftwsiamvv 21 (27)
T d2e74h1 6 WVALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhheeeeEE
Confidence 4456778899998664
No 2
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=16.20 E-value=22 Score=25.34 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=26.0
Q ss_pred ccccccchhhHHHHHHHHhccchhhhccccc
Q 032373 64 FIPLYPIGVLGEMLLLYQAFPYMKEKNIFAN 94 (142)
Q Consensus 64 FivLYPlGv~~E~~~i~~alp~~~~~~~~s~ 94 (142)
=+-|||+|..--|--||..+...++.+.|.-
T Consensus 110 qfsLYpmg~~d~m~~Iy~~id~~k~~G~~~~ 140 (189)
T d1s99a_ 110 QFALYPMNEPDYMGLIMEAVDIAKAQGTFVQ 140 (189)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred eEEEEecCCccHHHHHHHHHHHHHHcCCCcc
Confidence 3569999998889999999999999766543
No 3
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.69 E-value=8.4 Score=25.98 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=13.9
Q ss_pred HHHHHHHHhhhhhhhh
Q 032373 27 FITFLAWCLIEVIRYP 42 (142)
Q Consensus 27 ~~l~~aWsi~EviRY~ 42 (142)
+++++|||.-|..||.
T Consensus 96 ~TLilaws~eEaa~Yl 111 (129)
T d2a1ia1 96 CTLILAWSPEEAGRYL 111 (129)
T ss_dssp CEEEEESSHHHHHHHH
T ss_pred CEEEEEcCHHHHHHHH
Confidence 4577899999999995
No 4
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.64 E-value=37 Score=18.24 Aligned_cols=10 Identities=50% Similarity=0.574 Sum_probs=6.9
Q ss_pred HHHHcccccc
Q 032373 126 LKQRGSKLGK 135 (142)
Q Consensus 126 l~QRkk~l~~ 135 (142)
+||||+.|+.
T Consensus 29 lKqrRRTLKN 38 (41)
T d1k1va_ 29 LKQRRRTLKN 38 (41)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhc
Confidence 5788877754
No 5
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.61 E-value=43 Score=19.03 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=10.9
Q ss_pred HHHHHHhhhhhhhh
Q 032373 29 TFLAWCLIEVIRYP 42 (142)
Q Consensus 29 l~~aWsi~EviRY~ 42 (142)
+-+.=|.+||-||.
T Consensus 15 ~GF~ECa~EV~RyL 28 (55)
T d2db7a1 15 LGFRECLAEVARYL 28 (55)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 45666899999984
No 6
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=5.04 E-value=74 Score=20.37 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=4.2
Q ss_pred hhcccc
Q 032373 57 TYLRYT 62 (142)
Q Consensus 57 ~WLRYt 62 (142)
-||||.
T Consensus 5 ~WLrY~ 10 (139)
T d1l8na2 5 CWLRYE 10 (139)
T ss_dssp TTCCCC
T ss_pred hhcCCC
Confidence 488885
No 7
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=3.64 E-value=1.1e+02 Score=19.66 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=4.3
Q ss_pred hhcccc
Q 032373 57 TYLRYT 62 (142)
Q Consensus 57 ~WLRYt 62 (142)
.||||.
T Consensus 6 ~WLrY~ 11 (147)
T d1h41a2 6 MWLRYQ 11 (147)
T ss_dssp TTCCCC
T ss_pred HhhCCC
Confidence 588884
No 8
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}
Probab=3.45 E-value=1.8e+02 Score=17.31 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=9.4
Q ss_pred HHHHHHHHcccc
Q 032373 122 YSHMLKQRGSKL 133 (142)
Q Consensus 122 y~hMl~QRkk~l 133 (142)
...|+.||+|.|
T Consensus 53 L~~lv~kRkklL 64 (84)
T d1kuqa_ 53 LLMMVGQRRRLL 64 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 447888999888
No 9
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}
Probab=3.40 E-value=1.4e+02 Score=21.08 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=11.4
Q ss_pred HHHHHHHHHcccccc
Q 032373 121 LYSHMLKQRGSKLGK 135 (142)
Q Consensus 121 ly~hMl~QRkk~l~~ 135 (142)
+-..++.||||.+++
T Consensus 197 ~~~~~F~~rRK~l~~ 211 (252)
T d1qyra_ 197 ITTEAFNQRRKTIRN 211 (252)
T ss_dssp HHHHHHHTTTSBHHH
T ss_pred HHHHHHccchHHHHH
Confidence 356778999999843
No 10
>d1igqa_ b.34.1.3 (A:) Transcriptional repressor protein KorB {Escherichia coli [TaxId: 562]}
Probab=3.39 E-value=1.1e+02 Score=17.07 Aligned_cols=13 Identities=31% Similarity=0.789 Sum_probs=8.1
Q ss_pred hCCCCc--hhhhccc
Q 032373 49 IGACPP--WLTYLRY 61 (142)
Q Consensus 49 ~~~~p~--~L~WLRY 61 (142)
+++.|+ -+.|+||
T Consensus 18 LnrRP~~~G~awlky 32 (54)
T d1igqa_ 18 LNRRPPAEGYAWLKY 32 (54)
T ss_dssp TTBCCSSTTEEEEEE
T ss_pred hcCCCcccceEEEEE
Confidence 344443 6788887
Done!