BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032374
         (142 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q05623|MYBPH_CHICK Myosin-binding protein H OS=Gallus gallus GN=MYBPH PE=1 SV=1
          Length = 537

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 10  PLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQFQRPPPPSLP 69
           PL +SR +     K + F  RT Q+ +  + Q  V +  A+ K  L  R  +RP PP   
Sbjct: 278 PLDTSRVNIRNTDKDTIFFIRTAQRSDSGKYQLSVRINGAEDKAILDIRVIERPGPPQNL 337

Query: 70  KIED 73
           K+ D
Sbjct: 338 KLVD 341


>sp|P38179|ALG3_YEAST Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase
           OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
           GN=ALG3 PE=1 SV=1
          Length = 458

 Score = 30.4 bits (67), Expect = 3.5,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 50  KGKRGLQARQFQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMV 107
           +G++ LQ +QF RPP      ++D    R+VIF   AN+ +  PL I+      KI++
Sbjct: 8   QGEKSLQRKQFVRPPLDLWQDLKD--GVRYVIFDCRANLIV-MPLLILFESMLCKIII 62


>sp|A2ARZ3|FSIP2_MOUSE Fibrous sheath-interacting protein 2 OS=Mus musculus GN=Fsip2 PE=1
            SV=3
          Length = 6995

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 22   VKHSPFSSRTTQKPNGRERQRRVLV-VQAKGKRGLQARQFQRPPPPSL 68
            V+ S  S  TT K  G + Q  V      K  RG Q +Q    PPPS+
Sbjct: 5584 VQQSAMSPPTTMKSRGAQVQESVTSPFTTKESRGAQVQQSAMSPPPSM 5631


>sp|A5PJD8|TEX37_BOVIN Testis-expressed sequence 37 protein OS=Bos taurus GN=TEX37 PE=2
          SV=1
          Length = 180

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 34 KPNGRERQRRVLVV-QAKGKRGLQARQFQRPPPPSLPKIEDDGNPRF 79
          +P G+ +  RV    QAK    LQ ++F RP P   PK+E DG P F
Sbjct: 26 RPYGKHKYARVTSEEQAKLDTQLQDKEFYRPTPSPNPKLE-DGYPAF 71


>sp|P57973|PGK_PASMU Phosphoglycerate kinase OS=Pasteurella multocida (strain Pm70)
           GN=pgk PE=3 SV=1
          Length = 387

 Score = 29.6 bits (65), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 96  IITGGTTAKIMVAAKDNFLGKYIYKDTL---ARNLAA 129
           II GG  A   +AA  + +GK +Y++ L   A+NLAA
Sbjct: 211 IIVGGGIANTFIAAAGHNVGKSLYEEDLIPVAKNLAA 247


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,539,555
Number of Sequences: 539616
Number of extensions: 1905265
Number of successful extensions: 5257
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5244
Number of HSP's gapped (non-prelim): 20
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)