Query 032374
Match_columns 142
No_of_seqs 23 out of 25
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 21:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2c_A Matrix protein VP40; vi 36.0 16 0.00055 27.9 1.8 24 84-107 34-63 (140)
2 2kd5_A ADF H, actin severing a 26.0 85 0.0029 22.1 4.1 42 74-118 59-110 (144)
3 1yua_A Topoisomerase I; gene-r 24.3 33 0.0011 25.9 1.7 18 69-86 75-92 (122)
4 2kvk_A Actin severing and dyna 22.0 1.3E+02 0.0043 21.4 4.4 40 74-116 59-108 (144)
5 2w0i_A Twinfilin-2; cytoskelet 20.8 1.7E+02 0.0059 20.3 4.9 39 74-115 53-102 (135)
6 3tcq_A Matrix protein VP40; se 20.5 49 0.0017 28.2 2.2 24 84-107 88-117 (326)
7 2d8b_A Twinfilin-1; cell-free 20.2 1.6E+02 0.0055 21.5 4.8 40 74-116 78-128 (166)
8 2wzr_1 Polyprotein; capsid, RN 19.8 51 0.0017 26.3 2.1 17 78-94 179-195 (219)
9 1f7s_A Actin depolymerizing fa 19.7 1.1E+02 0.0038 21.3 3.7 41 74-117 62-113 (139)
10 1fmd_1 Foot-and-mouth disease 19.4 53 0.0018 26.2 2.1 17 79-95 170-186 (208)
No 1
>1h2c_A Matrix protein VP40; virus/viral protein, filovirus, ebola virus, matrix protein VP40, assembly, budding; 1.6A {Ebola virus} SCOP: b.31.1.1
Probab=36.00 E-value=16 Score=27.91 Aligned_cols=24 Identities=38% Similarity=0.677 Sum_probs=17.5
Q ss_pred Eeecceeeeeeeeeecc------hhHHHHH
Q 032374 84 RMANVYLWYPLSIITGG------TTAKIMV 107 (142)
Q Consensus 84 R~~~~~~WYPLsiVtGG------ttAk~mV 107 (142)
-+|.++.|.||+|+.-= |+|-+|.
T Consensus 34 ~~K~iP~WLPLGi~~~~~Y~~~~T~AAi~~ 63 (140)
T 1h2c_A 34 LMKQIPIWLPLGVADQKTYSFDSTTAAIML 63 (140)
T ss_dssp EEEEEEEEEEEEEECSSSSCHHHHHHHHHH
T ss_pred hhccCceeeecccccccccchHHHHHHHHh
Confidence 35788999999999763 4555554
No 2
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=25.97 E-value=85 Score=22.15 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=29.5
Q ss_pred CCCCcEEEEE---------Eeecce-eeeeeeeeecchhHHHHHHHHhhhhhHHH
Q 032374 74 DGNPRFVIFI---------RMANVY-LWYPLSIITGGTTAKIMVAAKDNFLGKYI 118 (142)
Q Consensus 74 dgNp~FVIfi---------R~~~~~-~WYPLsiVtGGttAk~mV~a~dn~lgk~i 118 (142)
|+.|+|.+|= |.+-++ .|.|=+. ....|++.++-.+.+-+.+
T Consensus 59 ~~~~rY~~~~~~~~~~~~~~~k~vfI~w~Pd~a---~vk~KMlyAssk~~l~~~l 110 (144)
T 2kd5_A 59 TEKPCYVAFDFEYNDAGSKREKLILIQWIPDTA---RPREKMMYSASRDALSSVS 110 (144)
T ss_dssp CSSCEEEEEEEEEESSSCEEEEEEEEEECCCCS---CSHHHHHHHHHGGGGTTTT
T ss_pred ccCcEEEEEEEEecCCCCCccCEEEEEECCCCC---CHHHHhhhHHHHHHHHHHh
Confidence 4589999983 344444 8998754 5678888888777776543
No 3
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=24.32 E-value=33 Score=25.91 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.3
Q ss_pred CCCCCCCCCcEEEEEEee
Q 032374 69 PKIEDDGNPRFVIFIRMA 86 (142)
Q Consensus 69 Pkid~dgNp~FVIfiR~~ 86 (142)
|..|||||+-.|=|-|-.
T Consensus 75 P~~D~~Gn~tivrfSRKt 92 (122)
T 1yua_A 75 PQQDPEGNKTMVRFSRKT 92 (122)
T ss_dssp CSSCTTCCCEEEEEETTT
T ss_pred CccCCCCCeeeEEeeccc
Confidence 888999999999886643
No 4
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=22.03 E-value=1.3e+02 Score=21.36 Aligned_cols=40 Identities=25% Similarity=0.432 Sum_probs=26.3
Q ss_pred CCCCcEEEEE---------Eeecce-eeeeeeeeecchhHHHHHHHHhhhhhH
Q 032374 74 DGNPRFVIFI---------RMANVY-LWYPLSIITGGTTAKIMVAAKDNFLGK 116 (142)
Q Consensus 74 dgNp~FVIfi---------R~~~~~-~WYPLsiVtGGttAk~mV~a~dn~lgk 116 (142)
++.|+|++|- |++-++ .|.|=+ -....|++.++-++.+-+
T Consensus 59 ~~~prY~~y~~~~~~~~~~~~k~vfI~w~Pd~---a~vk~KMlyassk~~lk~ 108 (144)
T 2kvk_A 59 TEKPCYVAFDFEYNDAGSKREKLILIQWIPDT---ARPREKMMYSASRDALSS 108 (144)
T ss_dssp TTSCCEEEEEEEEEETTEEEEEEEEEEECCTT---SCHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEEeeeccCCCCcccEEEEEECCCC---CCHHHHHHHHHHHHHHHH
Confidence 3589999874 344333 899853 456777777776666544
No 5
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=20.85 E-value=1.7e+02 Score=20.26 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=25.0
Q ss_pred CCCCcEEEE---------EEeecce-eeeee-eeeecchhHHHHHHHHhhhhh
Q 032374 74 DGNPRFVIF---------IRMANVY-LWYPL-SIITGGTTAKIMVAAKDNFLG 115 (142)
Q Consensus 74 dgNp~FVIf---------iR~~~~~-~WYPL-siVtGGttAk~mV~a~dn~lg 115 (142)
++.|+|++| .|++-++ .|.|- + .....++|.++-++.+-
T Consensus 53 ~~~~rY~~y~~~~~~~~~~~~k~vfI~w~P~~~---~~vk~kMlYassk~~l~ 102 (135)
T 2w0i_A 53 RDAARYHFFLYKHTHEGDPLESVVFIYSMPGYK---CSIKERMLYSSCKSRLL 102 (135)
T ss_dssp SSSCEEEEEEEEEEETTEEEEEEEEEEECCGGG---SCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecccccCCCCCccEEEEEECCCCC---CCHHHHhHhHHhHHHHH
Confidence 468999998 3566444 89997 2 23455666666555543
No 6
>3tcq_A Matrix protein VP40; seattle structural genomics centers for infectious disease, sebov, seattle structural genomics center for infect disease; 1.60A {Sudan ebolavirus} PDB: 1es6_A 1h2d_A
Probab=20.49 E-value=49 Score=28.23 Aligned_cols=24 Identities=42% Similarity=0.689 Sum_probs=16.7
Q ss_pred Eeecceeeeeeeeeecc------hhHHHHH
Q 032374 84 RMANVYLWYPLSIITGG------TTAKIMV 107 (142)
Q Consensus 84 R~~~~~~WYPLsiVtGG------ttAk~mV 107 (142)
=+|.++.|.||+|..-- |+|-+|.
T Consensus 88 lmK~iPiWLPLGva~q~~YsfdsTtAAiml 117 (326)
T 3tcq_A 88 LMKQIPIWLPLGIADQKTYSFDSTTAAIML 117 (326)
T ss_dssp EEEEEEEEEEEEEECSSSSCHHHHHHHHHS
T ss_pred hhhcCceeeeccccccceecchhHHHHHhh
Confidence 35667999999998653 4555554
No 7
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=20.20 E-value=1.6e+02 Score=21.46 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=26.0
Q ss_pred CCCCcEEEEE---------Eeecce-eeeee-eeeecchhHHHHHHHHhhhhhH
Q 032374 74 DGNPRFVIFI---------RMANVY-LWYPL-SIITGGTTAKIMVAAKDNFLGK 116 (142)
Q Consensus 74 dgNp~FVIfi---------R~~~~~-~WYPL-siVtGGttAk~mV~a~dn~lgk 116 (142)
|+.|+|++|- |.+-++ .|.|- +. ....|+|.++-++.+-+
T Consensus 78 ~~~pRY~~y~~~~~~~~~~~~k~vFI~w~P~~~~---~ik~KMlYAssk~~l~~ 128 (166)
T 2d8b_A 78 KDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTC---SIRERMLYSSCKSPLLE 128 (166)
T ss_dssp SSCCEEEEEEEEEEETTEEEEEEEEEEECCCSSS---CHHHHHHHHHTTHHHHH
T ss_pred CCCceEEEEeccccCCCCccccEEEEEECCCCCC---CHHHeeehhhhHHHHHH
Confidence 4689999984 455444 89997 32 45567777766655543
No 8
>2wzr_1 Polyprotein; capsid, RNA replication, RNA-directed RNA polymerase, nucleotidyltransferase, HOST cytoplasmic vesicle, capsid protein; 3.00A {Foot-and-mouth disease virus}
Probab=19.83 E-value=51 Score=26.32 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=15.1
Q ss_pred cEEEEEEeecceeeeee
Q 032374 78 RFVIFIRMANVYLWYPL 94 (142)
Q Consensus 78 ~FVIfiR~~~~~~WYPL 94 (142)
.+=||+|.|++.+|.|=
T Consensus 179 ~v~vy~R~K~~~a~cPR 195 (219)
T 2wzr_1 179 EVDVYLRMKRAELYCPR 195 (219)
T ss_dssp CCEEEEEEEEEEEEEEC
T ss_pred EEEEEEEeccceeECCC
Confidence 46799999999999984
No 9
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=19.71 E-value=1.1e+02 Score=21.26 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=25.6
Q ss_pred CCCCcEEEEEE----------eecce-eeeeeeeeecchhHHHHHHHHhhhhhHH
Q 032374 74 DGNPRFVIFIR----------MANVY-LWYPLSIITGGTTAKIMVAAKDNFLGKY 117 (142)
Q Consensus 74 dgNp~FVIfiR----------~~~~~-~WYPLsiVtGGttAk~mV~a~dn~lgk~ 117 (142)
++.|+|++|=- .+-++ .|.|-+. ....|++.++-.+.+-+.
T Consensus 62 ~~~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a---~v~~KmlyAssk~~l~~~ 113 (139)
T 1f7s_A 62 ADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIA---KVRSKMIYASSKDRFKRE 113 (139)
T ss_dssp TTSCEEEEEEEEEECTTSCEEEEEEEEEECCTTS---CHHHHHHHHHHHHHHHTT
T ss_pred CCCceEEEEEeeeeccccCcccCEEEEEECCCCC---ChhHheehHHhHHHHHHh
Confidence 45899988733 33333 8888753 456777777666555443
No 10
>1fmd_1 Foot-and-mouth disease virus (subunit VP1); icosahedral virus; 3.50A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1qgc_1 1qgc_5
Probab=19.38 E-value=53 Score=26.16 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=14.6
Q ss_pred EEEEEEeecceeeeeee
Q 032374 79 FVIFIRMANVYLWYPLS 95 (142)
Q Consensus 79 FVIfiR~~~~~~WYPLs 95 (142)
.=||+|.|++.+|.|=-
T Consensus 170 ~~vy~r~K~~~a~cPRP 186 (208)
T 1fmd_1 170 TELLVRMKRAELYCPRP 186 (208)
T ss_dssp EEEEEEEEEEEEEEECC
T ss_pred EEEEEEeccceeecCCC
Confidence 46999999999999843
Done!