Query 032374
Match_columns 142
No_of_seqs 23 out of 25
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 21:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032374.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032374hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yuaa2 g.41.3.3 (A:66-122) Pr 45.3 4.7 0.00034 25.3 1.7 19 69-87 10-28 (57)
2 d1h2ca_ b.31.1.1 (A:) EV matri 35.5 7.9 0.00058 27.4 1.8 24 84-107 20-49 (125)
3 d1m53a1 b.71.1.1 (A:521-598) I 26.2 34 0.0025 19.9 3.5 20 71-91 6-25 (78)
4 d2mev1_ b.121.4.1 (1:) Mengo e 24.2 20 0.0014 27.5 2.5 21 76-96 233-253 (268)
5 d1tme1_ b.121.4.1 (1:) Theilov 23.6 20 0.0015 27.4 2.5 19 76-94 229-247 (256)
6 d1f7sa_ d.109.1.2 (A:) Cofilin 20.8 53 0.0039 20.9 3.8 40 74-116 58-108 (124)
7 d1j0ha2 b.71.1.1 (A:506-588) N 19.6 44 0.0032 19.4 3.0 21 71-91 6-26 (83)
8 d1uoka1 b.71.1.1 (A:480-558) O 19.4 47 0.0034 19.3 3.1 20 71-91 6-25 (79)
9 d1v6sa_ c.86.1.1 (A:) Phosphog 18.7 14 0.001 29.5 0.6 39 95-134 211-249 (390)
10 d1yzya1 c.146.1.1 (A:1-412) Hy 18.6 23 0.0017 27.6 1.8 16 96-111 350-365 (412)
No 1
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=45.32 E-value=4.7 Score=25.34 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=15.9
Q ss_pred CCCCCCCCCcEEEEEEeec
Q 032374 69 PKIEDDGNPRFVIFIRMAN 87 (142)
Q Consensus 69 Pkid~dgNp~FVIfiR~~~ 87 (142)
|.-||||||-+|=|-|..+
T Consensus 10 P~~D~dGn~~vvRfsRK~k 28 (57)
T d1yuaa2 10 PQQDPEGNKTMVRFSRKTK 28 (57)
T ss_dssp CSSCTTCCCEEEEEETTTT
T ss_pred CccCCCCCEeEEEEecCCC
Confidence 7889999999998877543
No 2
>d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId: 205488]}
Probab=35.48 E-value=7.9 Score=27.42 Aligned_cols=24 Identities=38% Similarity=0.677 Sum_probs=17.5
Q ss_pred Eeecceeeeeeeeeecc------hhHHHHH
Q 032374 84 RMANVYLWYPLSIITGG------TTAKIMV 107 (142)
Q Consensus 84 R~~~~~~WYPLsiVtGG------ttAk~mV 107 (142)
-+|.++.|.||+|+.-- |+|-+|.
T Consensus 20 ~~k~ip~wlplgi~~~~~y~~~~t~aa~~~ 49 (125)
T d1h2ca_ 20 LMKQIPIWLPLGVADQKTYSFDSTTAAIML 49 (125)
T ss_dssp EEEEEEEEEEEEEECSSSSCHHHHHHHHHH
T ss_pred hhccCceeeecccccccccchHHHHHHHHh
Confidence 35788999999999763 4555554
No 3
>d1m53a1 b.71.1.1 (A:521-598) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]}
Probab=26.23 E-value=34 Score=19.90 Aligned_cols=20 Identities=5% Similarity=0.135 Sum_probs=15.6
Q ss_pred CCCCCCCcEEEEEEeecceee
Q 032374 71 IEDDGNPRFVIFIRMANVYLW 91 (142)
Q Consensus 71 id~dgNp~FVIfiR~~~~~~W 91 (142)
+++| ||+...|.|+.+...|
T Consensus 6 l~~~-~~~v~aY~R~~~~~~~ 25 (78)
T d1m53a1 6 LNPQ-DNTVYAYTRTLGNERY 25 (78)
T ss_dssp SCTT-CSSEEEEEEEETTEEE
T ss_pred ccCC-CCcEEEEEEEcCCeEE
Confidence 5665 9999999999876544
No 4
>d2mev1_ b.121.4.1 (1:) Mengo encephalomyocarditis virus coat proteins {Mengovirus [TaxId: 12107]}
Probab=24.21 E-value=20 Score=27.50 Aligned_cols=21 Identities=19% Similarity=0.605 Sum_probs=17.7
Q ss_pred CCcEEEEEEeecceeeeeeee
Q 032374 76 NPRFVIFIRMANVYLWYPLSI 96 (142)
Q Consensus 76 Np~FVIfiR~~~~~~WYPLsi 96 (142)
+-+|=||+|.|++..|.|==+
T Consensus 233 ~~~~~Vy~R~K~~r~ycPRP~ 253 (268)
T d2mev1_ 233 DIKFTVYLRYKNMRVFCPRPT 253 (268)
T ss_dssp TCCEEEEEEEEEEEEESCCCC
T ss_pred CcEEEEEEEeceeEEEcCCCC
Confidence 568999999999999998443
No 5
>d1tme1_ b.121.4.1 (1:) Theilovirus capsid proteins {Theiler's murine encephalomyelitis virus, strain da [TaxId: 12124]}
Probab=23.64 E-value=20 Score=27.42 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.5
Q ss_pred CCcEEEEEEeecceeeeee
Q 032374 76 NPRFVIFIRMANVYLWYPL 94 (142)
Q Consensus 76 Np~FVIfiR~~~~~~WYPL 94 (142)
+..|-||+|.|++..|.|=
T Consensus 229 ~~~~~Vy~R~K~~r~~cPR 247 (256)
T d1tme1_ 229 NTSASVRIRYKKMKVFCPR 247 (256)
T ss_dssp SCCEEEEEEEEEEEEEEEC
T ss_pred eeEEEEEEEecceEEECCC
Confidence 3578899999999999984
No 6
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]}
Probab=20.79 E-value=53 Score=20.86 Aligned_cols=40 Identities=15% Similarity=0.372 Sum_probs=25.6
Q ss_pred CCCCcEEEEE----------Eeecce-eeeeeeeeecchhHHHHHHHHhhhhhH
Q 032374 74 DGNPRFVIFI----------RMANVY-LWYPLSIITGGTTAKIMVAAKDNFLGK 116 (142)
Q Consensus 74 dgNp~FVIfi----------R~~~~~-~WYPLsiVtGGttAk~mV~a~dn~lgk 116 (142)
++.|+|.+|- |++-+. .|.|=+ .....|++-++-+..+-+
T Consensus 58 ~~~~ry~~~~~~~~~~~~~~~~k~vfI~w~Pd~---a~vk~KMlyAssk~~l~~ 108 (124)
T d1f7sa_ 58 ADECRYAIYDFDFVTAENCQKSKIFFIAWCPDI---AKVRSKMIYASSKDRFKR 108 (124)
T ss_dssp TTSCEEEEEEEEEECTTSCEEEEEEEEEECCTT---SCHHHHHHHHHHHHHHHT
T ss_pred cCCceEEEEEEEEecCCCCccccEEEEEECCCC---CCHhHeeeeHhHHHHHHH
Confidence 4589999986 444333 898852 356667777666554443
No 7
>d1j0ha2 b.71.1.1 (A:506-588) Neopullulanase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=19.62 E-value=44 Score=19.44 Aligned_cols=21 Identities=10% Similarity=0.210 Sum_probs=15.4
Q ss_pred CCCCCCCcEEEEEEeecceee
Q 032374 71 IEDDGNPRFVIFIRMANVYLW 91 (142)
Q Consensus 71 id~dgNp~FVIfiR~~~~~~W 91 (142)
++.|+++....|.|+...-.|
T Consensus 6 l~~~d~~~v~ay~R~~~~~~v 26 (83)
T d1j0ha2 6 LHADDEMNYLIYKKTDGDETV 26 (83)
T ss_dssp ECCSCTTTEEEEEEECSSCEE
T ss_pred EecCCCCCEEEEEEECCCCEE
Confidence 345568899999998866444
No 8
>d1uoka1 b.71.1.1 (A:480-558) Oligo-1,6-glucosidase {Bacillus cereus [TaxId: 1396]}
Probab=19.43 E-value=47 Score=19.26 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=15.5
Q ss_pred CCCCCCCcEEEEEEeecceee
Q 032374 71 IEDDGNPRFVIFIRMANVYLW 91 (142)
Q Consensus 71 id~dgNp~FVIfiR~~~~~~W 91 (142)
+++| ||+...|.|..+...|
T Consensus 6 l~~~-~~~V~aY~R~~~~~~~ 25 (79)
T d1uoka1 6 ILEN-NPSIFAYVRTYGVEKL 25 (79)
T ss_dssp ESTT-CSSEEEEEEEETTEEE
T ss_pred ccCC-CCcEEEEEEECCCcEE
Confidence 5564 9999999999877544
No 9
>d1v6sa_ c.86.1.1 (A:) Phosphoglycerate kinase {Thermus thermophilus [TaxId: 274]}
Probab=18.74 E-value=14 Score=29.49 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=29.8
Q ss_pred eeeecchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 032374 95 SIITGGTTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRV 134 (142)
Q Consensus 95 siVtGGttAk~mV~a~dn~lgk~iy~~TL~rNia~~IYkD 134 (142)
.|+.||-.||+..+|.....|+.++..... +.+.-+++.
T Consensus 211 ~iiigG~mAntFL~a~G~~IG~sl~e~~~~-~~~~~~~~~ 249 (390)
T d1v6sa_ 211 RLLIGGAMAFTFLKALGGEVGRSLVEEDRL-DLAKDLLGR 249 (390)
T ss_dssp EEEECSTTHHHHHHHTTCBCTTCCCCGGGH-HHHHHHHHH
T ss_pred eeeecccHHHHHHHHcCCccCcchhhhhhh-hhhHhHHHh
Confidence 489999999999999999999987776544 344444443
No 10
>d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011 {Haemophilus influenzae [TaxId: 727]}
Probab=18.60 E-value=23 Score=27.57 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=14.0
Q ss_pred eeecchhHHHHHHHHh
Q 032374 96 IITGGTTAKIMVAAKD 111 (142)
Q Consensus 96 iVtGGttAk~mV~a~d 111 (142)
++|||.||..+++++.
T Consensus 350 v~tGGdTa~av~~~Lg 365 (412)
T d1yzya1 350 ITAGGETSSIVVQELG 365 (412)
T ss_dssp EEESHHHHHHHHHHHT
T ss_pred EEeccHHHHHHHHHcC
Confidence 7899999999998764
Done!