Query 032375
Match_columns 142
No_of_seqs 137 out of 1097
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 13:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 2.9E-29 6.2E-34 150.6 14.0 135 4-141 19-154 (160)
2 KOG0027 Calmodulin and related 100.0 7E-28 1.5E-32 146.8 14.2 138 3-142 6-148 (151)
3 PTZ00183 centrin; Provisional 99.9 1.2E-24 2.7E-29 133.6 14.8 138 3-142 15-153 (158)
4 PTZ00184 calmodulin; Provision 99.9 3.9E-24 8.5E-29 130.1 15.2 136 4-141 10-146 (149)
5 KOG0028 Ca2+-binding protein ( 99.9 8.4E-24 1.8E-28 124.8 13.0 137 4-142 32-169 (172)
6 KOG0031 Myosin regulatory ligh 99.9 1.7E-22 3.7E-27 118.6 13.7 134 3-142 30-164 (171)
7 KOG0030 Myosin essential light 99.9 1.9E-22 4.1E-27 116.5 11.5 136 3-141 9-149 (152)
8 KOG0037 Ca2+-binding protein, 99.9 7.5E-22 1.6E-26 122.3 14.3 130 5-141 57-186 (221)
9 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.1E-19 2.4E-24 112.9 13.5 138 3-141 24-173 (193)
10 KOG0036 Predicted mitochondria 99.8 7.2E-19 1.6E-23 118.1 14.3 131 4-141 13-144 (463)
11 KOG0034 Ca2+/calmodulin-depend 99.8 8E-19 1.7E-23 109.0 13.5 131 5-141 33-173 (187)
12 KOG0377 Protein serine/threoni 99.6 2E-14 4.4E-19 98.0 11.2 136 4-142 463-614 (631)
13 KOG4223 Reticulocalbin, calume 99.6 1.1E-14 2.3E-19 95.6 8.9 133 6-140 164-302 (325)
14 PLN02964 phosphatidylserine de 99.6 4.7E-14 1E-18 101.8 11.6 98 4-107 142-243 (644)
15 cd05022 S-100A13 S-100A13: S-1 99.6 2.6E-14 5.6E-19 79.0 7.2 64 78-141 7-73 (89)
16 PF13499 EF-hand_7: EF-hand do 99.5 5.2E-14 1.1E-18 74.1 6.4 61 81-141 2-66 (66)
17 KOG0027 Calmodulin and related 99.5 2E-13 4.4E-18 83.2 9.1 101 42-142 7-112 (151)
18 KOG0037 Ca2+-binding protein, 99.5 1.6E-13 3.6E-18 85.6 8.7 86 4-97 123-208 (221)
19 COG5126 FRQ1 Ca2+-binding prot 99.5 6E-13 1.3E-17 80.5 10.2 103 3-107 54-156 (160)
20 cd05027 S-100B S-100B: S-100B 99.5 2.4E-13 5.1E-18 75.2 7.5 64 78-141 7-77 (88)
21 PTZ00183 centrin; Provisional 99.5 1E-12 2.2E-17 80.6 10.4 104 3-107 51-154 (158)
22 PF13499 EF-hand_7: EF-hand do 99.5 3.5E-13 7.6E-18 70.9 7.3 62 6-69 1-66 (66)
23 KOG4223 Reticulocalbin, calume 99.5 8.5E-13 1.8E-17 86.8 10.0 136 3-140 75-225 (325)
24 PTZ00184 calmodulin; Provision 99.4 4.1E-12 9E-17 77.0 10.0 102 4-106 46-147 (149)
25 cd05022 S-100A13 S-100A13: S-1 99.4 2E-12 4.3E-17 71.5 7.3 65 5-71 8-75 (89)
26 KOG0044 Ca2+ sensor (EF-Hand s 99.4 3.8E-12 8.3E-17 79.5 8.9 100 6-107 65-175 (193)
27 cd05029 S-100A6 S-100A6: S-100 99.4 3.5E-12 7.7E-17 70.5 7.8 64 78-141 9-77 (88)
28 cd05031 S-100A10_like S-100A10 99.4 3.9E-12 8.4E-17 71.5 7.3 64 78-141 7-77 (94)
29 cd05027 S-100B S-100B: S-100B 99.4 7E-12 1.5E-16 69.3 7.9 65 5-71 8-79 (88)
30 cd05025 S-100A1 S-100A1: S-100 99.4 5.7E-12 1.2E-16 70.5 7.4 64 78-141 8-78 (92)
31 PF13833 EF-hand_8: EF-hand do 99.4 3.5E-12 7.7E-17 64.4 5.8 50 92-141 1-51 (54)
32 cd05026 S-100Z S-100Z: S-100Z 99.3 7.7E-12 1.7E-16 70.0 7.3 64 78-141 9-79 (93)
33 cd00213 S-100 S-100: S-100 dom 99.3 1.6E-11 3.4E-16 68.2 7.3 66 76-141 5-77 (88)
34 cd00052 EH Eps15 homology doma 99.3 1.6E-11 3.6E-16 64.6 6.6 58 82-141 2-59 (67)
35 smart00027 EH Eps15 homology d 99.3 2.8E-11 6E-16 68.3 7.8 64 76-141 7-70 (96)
36 cd00051 EFh EF-hand, calcium b 99.3 3.6E-11 7.8E-16 62.0 7.3 62 81-142 2-63 (63)
37 KOG0038 Ca2+-binding kinase in 99.3 5.4E-11 1.2E-15 70.0 8.5 97 45-141 73-175 (189)
38 PLN02964 phosphatidylserine de 99.3 1E-10 2.3E-15 84.9 11.6 120 21-141 120-241 (644)
39 KOG2562 Protein phosphatase 2 99.3 6.7E-11 1.5E-15 81.3 9.9 131 4-139 274-420 (493)
40 KOG0028 Ca2+-binding protein ( 99.3 1.2E-10 2.7E-15 69.5 9.4 104 3-107 67-170 (172)
41 cd05025 S-100A1 S-100A1: S-100 99.2 8E-11 1.7E-15 65.9 7.9 68 4-71 8-80 (92)
42 cd05031 S-100A10_like S-100A10 99.2 7.9E-11 1.7E-15 66.2 7.6 68 4-71 7-79 (94)
43 KOG0034 Ca2+/calmodulin-depend 99.2 3.6E-10 7.8E-15 70.6 11.2 100 7-108 68-176 (187)
44 cd05023 S-100A11 S-100A11: S-1 99.2 1.3E-10 2.8E-15 64.4 8.1 64 78-141 8-78 (89)
45 cd00052 EH Eps15 homology doma 99.2 7.4E-11 1.6E-15 62.1 6.7 59 8-70 2-60 (67)
46 cd05029 S-100A6 S-100A6: S-100 99.2 1.3E-10 2.8E-15 64.3 7.6 65 5-71 10-79 (88)
47 smart00027 EH Eps15 homology d 99.2 1.2E-10 2.6E-15 65.7 7.6 64 4-71 9-72 (96)
48 cd05026 S-100Z S-100Z: S-100Z 99.2 2E-10 4.4E-15 64.3 7.7 67 5-71 10-81 (93)
49 KOG0040 Ca2+-binding actin-bun 99.2 3.6E-10 7.8E-15 86.9 11.0 127 5-141 2253-2396(2399)
50 PF14658 EF-hand_9: EF-hand do 99.2 1.1E-10 2.3E-15 60.1 5.7 60 83-142 2-63 (66)
51 PF13833 EF-hand_8: EF-hand do 99.2 1.4E-10 3E-15 58.5 6.1 51 18-70 1-52 (54)
52 cd00252 SPARC_EC SPARC_EC; ext 99.2 2.9E-10 6.4E-15 65.8 7.5 62 76-141 45-106 (116)
53 cd00051 EFh EF-hand, calcium b 99.2 3.3E-10 7.3E-15 58.3 7.0 61 7-69 2-62 (63)
54 KOG0036 Predicted mitochondria 99.2 8.5E-10 1.9E-14 75.1 10.6 123 4-138 50-178 (463)
55 KOG2643 Ca2+ binding protein, 99.2 7E-10 1.5E-14 76.0 10.0 135 2-141 230-382 (489)
56 cd00213 S-100 S-100: S-100 dom 99.1 4E-10 8.7E-15 62.5 7.3 67 4-71 7-79 (88)
57 PF14658 EF-hand_9: EF-hand do 99.1 5.1E-10 1.1E-14 57.6 6.1 60 9-70 2-63 (66)
58 KOG2643 Ca2+ binding protein, 99.1 8.4E-10 1.8E-14 75.6 8.8 130 7-142 320-452 (489)
59 cd05030 calgranulins Calgranul 99.1 9.2E-10 2E-14 61.0 7.0 64 78-141 7-77 (88)
60 KOG4251 Calcium binding protei 98.9 1.9E-09 4.1E-14 69.0 5.1 138 3-140 99-261 (362)
61 cd05023 S-100A11 S-100A11: S-1 98.9 1.5E-08 3.2E-13 56.2 7.6 67 5-71 9-80 (89)
62 cd00252 SPARC_EC SPARC_EC; ext 98.9 1.8E-08 4E-13 58.4 7.7 60 42-105 47-106 (116)
63 cd05030 calgranulins Calgranul 98.9 2.3E-08 4.9E-13 55.4 6.8 66 5-71 8-79 (88)
64 cd05024 S-100A10 S-100A10: A s 98.8 4.2E-08 9.1E-13 54.0 7.5 63 78-141 7-74 (91)
65 KOG0041 Predicted Ca2+-binding 98.8 2.4E-08 5.2E-13 62.0 7.1 66 76-141 96-161 (244)
66 PF00036 EF-hand_1: EF hand; 98.7 2E-08 4.3E-13 43.7 3.3 28 6-33 1-28 (29)
67 PF00036 EF-hand_1: EF hand; 98.7 2E-08 4.2E-13 43.7 3.2 27 81-107 2-28 (29)
68 KOG0030 Myosin essential light 98.7 5E-08 1.1E-12 57.2 5.5 65 77-141 9-75 (152)
69 KOG0751 Mitochondrial aspartat 98.7 4E-07 8.6E-12 63.9 10.7 105 3-109 31-138 (694)
70 KOG0031 Myosin regulatory ligh 98.6 2.8E-07 6.1E-12 55.0 7.3 65 4-70 100-164 (171)
71 PF13405 EF-hand_6: EF-hand do 98.6 8.9E-08 1.9E-12 42.4 3.2 29 81-109 2-31 (31)
72 PF13405 EF-hand_6: EF-hand do 98.6 1.1E-07 2.4E-12 42.1 3.4 29 6-34 1-30 (31)
73 KOG0041 Predicted Ca2+-binding 98.6 6.8E-07 1.5E-11 55.8 7.9 100 5-106 99-202 (244)
74 KOG0169 Phosphoinositide-speci 98.6 2.3E-06 5E-11 62.9 11.4 131 5-141 136-272 (746)
75 cd05024 S-100A10 S-100A10: A s 98.5 2.1E-06 4.6E-11 47.4 7.8 66 5-71 8-76 (91)
76 KOG0377 Protein serine/threoni 98.5 7.7E-07 1.7E-11 61.8 7.3 67 4-70 546-614 (631)
77 PF14788 EF-hand_10: EF hand; 98.5 5E-07 1.1E-11 44.0 4.5 47 95-141 1-47 (51)
78 PRK12309 transaldolase/EF-hand 98.4 2.4E-06 5.2E-11 59.5 8.7 51 78-141 333-383 (391)
79 PF14788 EF-hand_10: EF hand; 98.4 1.3E-06 2.9E-11 42.5 5.4 49 21-71 1-49 (51)
80 PF12763 EF-hand_4: Cytoskelet 98.4 2.9E-06 6.3E-11 48.3 6.9 61 78-141 9-69 (104)
81 PF13202 EF-hand_5: EF hand; P 98.4 8E-07 1.7E-11 37.2 3.1 24 7-30 1-24 (25)
82 PF12763 EF-hand_4: Cytoskelet 98.3 3.8E-06 8.2E-11 47.8 6.7 63 3-70 8-70 (104)
83 PF10591 SPARC_Ca_bdg: Secrete 98.3 9.3E-07 2E-11 51.2 4.3 62 77-140 52-113 (113)
84 KOG0751 Mitochondrial aspartat 98.3 4.1E-06 9E-11 59.0 7.9 62 78-139 178-240 (694)
85 KOG0038 Ca2+-binding kinase in 98.3 7.7E-06 1.7E-10 48.7 7.5 100 9-109 75-179 (189)
86 PF13202 EF-hand_5: EF hand; P 98.3 1.1E-06 2.4E-11 36.7 2.6 23 82-104 2-24 (25)
87 KOG4251 Calcium binding protei 98.3 7.2E-06 1.6E-10 53.0 7.4 118 21-139 215-341 (362)
88 PRK12309 transaldolase/EF-hand 98.2 8.8E-06 1.9E-10 56.8 7.8 59 37-108 328-386 (391)
89 KOG4666 Predicted phosphate ac 98.2 3.8E-06 8.3E-11 56.2 4.8 97 43-141 259-357 (412)
90 KOG0040 Ca2+-binding actin-bun 98.1 1E-05 2.2E-10 63.6 6.7 64 78-141 2252-2322(2399)
91 KOG2562 Protein phosphatase 2 98.1 3.8E-05 8.3E-10 53.8 8.7 134 4-140 224-376 (493)
92 KOG1029 Endocytic adaptor prot 98.1 0.00014 3E-09 54.2 11.3 60 80-141 196-255 (1118)
93 KOG1707 Predicted Ras related/ 98.0 7.9E-05 1.7E-09 53.8 8.7 133 4-141 194-375 (625)
94 KOG0046 Ca2+-binding actin-bun 97.9 9.9E-05 2.1E-09 52.6 7.2 65 76-141 16-83 (627)
95 PF09279 EF-hand_like: Phospho 97.8 4.8E-05 1E-09 41.6 4.3 60 81-141 2-67 (83)
96 PF10591 SPARC_Ca_bdg: Secrete 97.8 2.3E-05 5.1E-10 45.4 3.0 62 40-103 51-112 (113)
97 KOG4065 Uncharacterized conser 97.7 0.00025 5.4E-09 40.6 6.1 58 84-141 72-143 (144)
98 KOG4666 Predicted phosphate ac 97.7 0.00011 2.4E-09 49.4 5.4 103 5-109 259-361 (412)
99 PF05042 Caleosin: Caleosin re 97.5 0.00086 1.9E-08 41.3 7.0 133 5-140 7-163 (174)
100 smart00054 EFh EF-hand, calciu 97.5 0.00015 3.3E-09 30.4 2.8 27 7-33 2-28 (29)
101 PF09279 EF-hand_like: Phospho 97.5 0.00066 1.4E-08 37.0 5.9 66 6-72 1-70 (83)
102 KOG0046 Ca2+-binding actin-bun 97.4 0.00072 1.6E-08 48.4 6.7 64 5-71 19-85 (627)
103 smart00054 EFh EF-hand, calciu 97.4 0.00022 4.7E-09 29.9 2.6 25 82-106 3-27 (29)
104 KOG0035 Ca2+-binding actin-bun 97.2 0.0063 1.4E-07 46.6 9.3 97 4-103 746-848 (890)
105 KOG0169 Phosphoinositide-speci 96.6 0.03 6.5E-07 42.2 9.0 97 41-141 134-230 (746)
106 PLN02952 phosphoinositide phos 96.6 0.021 4.6E-07 42.4 8.1 84 57-141 14-108 (599)
107 KOG1955 Ral-GTPase effector RA 96.6 0.011 2.4E-07 42.5 6.2 62 78-141 230-291 (737)
108 PF05517 p25-alpha: p25-alpha 96.5 0.024 5.2E-07 34.8 7.0 63 7-71 1-69 (154)
109 PF08726 EFhand_Ca_insen: Ca2+ 96.5 0.0009 1.9E-08 35.1 0.4 56 78-141 5-67 (69)
110 KOG3555 Ca2+-binding proteogly 96.4 0.01 2.2E-07 40.7 5.1 109 5-120 211-322 (434)
111 KOG1265 Phospholipase C [Lipid 96.4 0.11 2.3E-06 40.3 10.7 119 15-141 158-297 (1189)
112 KOG4347 GTPase-activating prot 96.4 0.0069 1.5E-07 44.6 4.5 78 22-101 535-612 (671)
113 KOG4065 Uncharacterized conser 96.4 0.027 5.9E-07 32.5 6.0 60 9-68 71-142 (144)
114 KOG1029 Endocytic adaptor prot 96.3 0.0071 1.5E-07 45.6 4.4 64 3-70 193-256 (1118)
115 KOG4578 Uncharacterized conser 96.2 0.0056 1.2E-07 41.6 3.0 61 81-141 335-396 (421)
116 PF09069 EF-hand_3: EF-hand; 96.0 0.083 1.8E-06 29.3 6.4 60 79-141 3-73 (90)
117 KOG2243 Ca2+ release channel ( 95.9 0.064 1.4E-06 43.7 7.8 57 84-141 4062-4118(5019)
118 PF05517 p25-alpha: p25-alpha 95.8 0.091 2E-06 32.3 6.8 53 89-141 12-67 (154)
119 PF05042 Caleosin: Caleosin re 95.8 0.07 1.5E-06 33.2 6.2 29 44-72 8-36 (174)
120 KOG1955 Ral-GTPase effector RA 95.3 0.06 1.3E-06 38.9 5.3 63 4-70 230-292 (737)
121 KOG4578 Uncharacterized conser 95.2 0.017 3.8E-07 39.3 2.3 62 45-108 335-399 (421)
122 KOG0042 Glycerol-3-phosphate d 95.1 0.058 1.3E-06 39.6 5.0 62 80-141 594-655 (680)
123 KOG3555 Ca2+-binding proteogly 94.9 0.069 1.5E-06 36.8 4.5 59 79-141 250-308 (434)
124 KOG4347 GTPase-activating prot 94.6 0.12 2.7E-06 38.5 5.4 75 60-135 535-610 (671)
125 KOG3866 DNA-binding protein of 94.3 0.13 2.8E-06 35.1 4.7 59 82-140 247-321 (442)
126 KOG0998 Synaptic vesicle prote 93.7 0.097 2.1E-06 40.8 3.7 61 78-140 282-342 (847)
127 KOG0042 Glycerol-3-phosphate d 93.3 0.24 5.3E-06 36.6 5.0 64 6-71 594-657 (680)
128 cd07313 terB_like_2 tellurium 93.1 0.9 2E-05 25.6 6.5 83 18-102 12-95 (104)
129 PF09069 EF-hand_3: EF-hand; 92.7 0.98 2.1E-05 25.1 7.1 65 5-72 3-76 (90)
130 KOG0035 Ca2+-binding actin-bun 92.6 0.47 1E-05 37.0 5.8 66 76-141 744-814 (890)
131 PLN02952 phosphoinositide phos 92.3 1.6 3.4E-05 33.0 8.0 89 18-107 13-110 (599)
132 KOG0998 Synaptic vesicle prote 92.2 0.34 7.4E-06 38.0 4.8 131 4-141 10-188 (847)
133 KOG4301 Beta-dystrobrevin [Cyt 91.5 2.1 4.5E-05 29.8 7.3 90 46-141 113-213 (434)
134 PF02761 Cbl_N2: CBL proto-onc 91.4 1.3 2.9E-05 24.2 5.2 69 40-109 4-72 (85)
135 KOG2243 Ca2+ release channel ( 91.0 0.59 1.3E-05 38.7 5.0 58 10-70 4062-4119(5019)
136 PLN02222 phosphoinositide phos 90.3 1.7 3.7E-05 32.7 6.6 64 41-106 23-89 (581)
137 PLN02228 Phosphoinositide phos 90.2 2.2 4.8E-05 32.0 7.1 65 39-105 20-90 (567)
138 PF08414 NADPH_Ox: Respiratory 89.5 1.4 3E-05 24.9 4.4 62 42-108 29-93 (100)
139 KOG3866 DNA-binding protein of 89.2 1.2 2.6E-05 30.6 4.7 63 10-72 249-325 (442)
140 PF05099 TerB: Tellurite resis 89.0 2.3 5.1E-05 25.3 5.6 81 18-100 36-117 (140)
141 PF08726 EFhand_Ca_insen: Ca2+ 88.8 0.74 1.6E-05 24.2 2.9 55 3-67 4-65 (69)
142 KOG3449 60S acidic ribosomal p 88.6 3.2 6.9E-05 23.9 5.9 44 82-125 4-47 (112)
143 PF14513 DAG_kinase_N: Diacylg 88.5 1.5 3.2E-05 26.5 4.4 51 4-55 24-81 (138)
144 PF11116 DUF2624: Protein of u 88.3 2.8 6.1E-05 23.0 7.2 67 20-88 13-82 (85)
145 PF07308 DUF1456: Protein of u 87.7 2.7 5.8E-05 22.0 5.1 29 97-125 15-43 (68)
146 PLN02230 phosphoinositide phos 87.6 4 8.6E-05 31.0 6.9 62 79-141 29-100 (598)
147 KOG2871 Uncharacterized conser 85.7 1.6 3.5E-05 30.7 3.8 57 78-134 308-365 (449)
148 PLN02228 Phosphoinositide phos 85.6 7.6 0.00016 29.3 7.4 64 4-71 23-92 (567)
149 PF08414 NADPH_Ox: Respiratory 85.4 4.9 0.00011 22.8 6.2 29 19-52 42-70 (100)
150 PF09068 EF-hand_2: EF hand; 85.2 6 0.00013 23.5 7.2 29 80-108 98-126 (127)
151 PTZ00373 60S Acidic ribosomal 84.6 5.9 0.00013 23.0 5.9 44 82-125 6-49 (112)
152 PLN02222 phosphoinositide phos 84.4 7.6 0.00017 29.4 7.0 64 4-71 24-90 (581)
153 KOG1265 Phospholipase C [Lipid 84.4 10 0.00022 30.3 7.7 80 23-107 206-299 (1189)
154 KOG1707 Predicted Ras related/ 84.1 2.2 4.7E-05 32.0 4.1 59 5-71 315-377 (625)
155 PF12174 RST: RCD1-SRO-TAF4 (R 83.7 3.3 7.2E-05 21.8 3.7 46 60-108 9-54 (70)
156 KOG0039 Ferric reductase, NADH 83.2 2.5 5.5E-05 32.3 4.4 72 60-137 4-83 (646)
157 PF08976 DUF1880: Domain of un 82.9 1.5 3.2E-05 25.5 2.3 32 40-71 4-35 (118)
158 PLN02230 phosphoinositide phos 82.6 10 0.00022 28.9 7.1 65 4-71 28-102 (598)
159 KOG1264 Phospholipase C [Lipid 81.9 8 0.00017 30.6 6.4 125 14-141 153-291 (1267)
160 PLN02223 phosphoinositide phos 81.9 8 0.00017 29.0 6.2 62 79-141 16-90 (537)
161 PF12174 RST: RCD1-SRO-TAF4 (R 80.3 1.4 3E-05 23.3 1.5 40 103-142 13-52 (70)
162 cd07316 terB_like_DjlA N-termi 80.1 8.4 0.00018 21.6 7.6 82 18-102 12-96 (106)
163 KOG4286 Dystrophin-like protei 79.9 11 0.00023 29.6 6.4 132 7-141 422-578 (966)
164 TIGR01848 PHA_reg_PhaR polyhyd 79.8 6.9 0.00015 22.5 4.3 69 51-129 11-83 (107)
165 cd05833 Ribosomal_P2 Ribosomal 79.6 9.7 0.00021 22.0 5.9 43 83-125 5-47 (109)
166 KOG2871 Uncharacterized conser 77.9 1.8 3.9E-05 30.5 1.9 65 4-70 308-373 (449)
167 COG4103 Uncharacterized protei 77.8 13 0.00029 22.6 7.4 94 10-107 35-129 (148)
168 PHA02105 hypothetical protein 77.4 7.4 0.00016 19.5 3.6 47 95-141 4-55 (68)
169 PF00404 Dockerin_1: Dockerin 76.7 4 8.6E-05 16.0 2.0 14 89-102 1-14 (21)
170 PRK09430 djlA Dna-J like membr 76.6 21 0.00045 24.2 8.5 102 17-123 67-174 (267)
171 PF03672 UPF0154: Uncharacteri 75.9 9.2 0.0002 19.8 3.8 33 93-125 29-61 (64)
172 cd07313 terB_like_2 tellurium 75.2 5.3 0.00012 22.4 3.2 77 57-136 13-93 (104)
173 COG2818 Tag 3-methyladenine DN 75.0 2.1 4.6E-05 27.1 1.5 41 77-117 53-93 (188)
174 KOG4004 Matricellular protein 75.0 1.9 4.1E-05 27.7 1.3 54 86-141 194-248 (259)
175 PLN02223 phosphoinositide phos 72.5 31 0.00067 26.1 7.0 67 4-71 15-92 (537)
176 PRK00523 hypothetical protein; 72.5 12 0.00027 19.8 3.8 33 92-124 36-68 (72)
177 PF12419 DUF3670: SNF2 Helicas 71.0 9.9 0.00021 23.0 3.7 50 91-140 79-138 (141)
178 PF07879 PHB_acc_N: PHB/PHA ac 70.8 11 0.00025 19.4 3.3 22 86-107 10-31 (64)
179 PF07308 DUF1456: Protein of u 70.7 13 0.00029 19.4 4.6 32 23-56 15-46 (68)
180 PF14513 DAG_kinase_N: Diacylg 70.5 21 0.00046 21.6 5.4 68 20-91 6-81 (138)
181 KOG4004 Matricellular protein 70.1 2 4.4E-05 27.6 0.6 48 57-106 202-249 (259)
182 TIGR01639 P_fal_TIGR01639 Plas 69.2 14 0.00029 18.9 3.8 32 93-124 7-38 (61)
183 TIGR03573 WbuX N-acetyl sugar 68.5 19 0.00041 25.4 5.2 44 92-141 299-342 (343)
184 PF08461 HTH_12: Ribonuclease 67.8 9.8 0.00021 19.7 2.9 36 92-127 10-45 (66)
185 KOG0506 Glutaminase (contains 66.9 8.7 0.00019 28.3 3.2 58 84-141 91-156 (622)
186 PF02761 Cbl_N2: CBL proto-onc 66.8 20 0.00042 19.8 5.5 62 6-70 8-69 (85)
187 PLN00138 large subunit ribosom 66.8 23 0.0005 20.7 5.1 43 83-125 5-47 (113)
188 PF11116 DUF2624: Protein of u 66.6 20 0.00043 19.8 5.3 30 95-124 14-43 (85)
189 TIGR02675 tape_meas_nterm tape 65.9 9.3 0.0002 20.4 2.6 29 42-70 12-41 (75)
190 PF01023 S_100: S-100/ICaBP ty 65.8 13 0.00029 17.5 3.7 29 79-107 6-36 (44)
191 COG3763 Uncharacterized protei 65.8 18 0.00039 19.0 3.8 33 93-125 36-68 (71)
192 PRK01844 hypothetical protein; 64.1 20 0.00044 19.0 3.8 32 93-124 36-67 (72)
193 PF01885 PTS_2-RNA: RNA 2'-pho 63.8 17 0.00037 23.2 3.9 37 89-125 26-62 (186)
194 PF09336 Vps4_C: Vps4 C termin 63.6 16 0.00034 18.7 3.1 27 95-121 29-55 (62)
195 PTZ00373 60S Acidic ribosomal 62.9 28 0.00061 20.3 5.3 54 7-67 5-58 (112)
196 PF04558 tRNA_synt_1c_R1: Glut 60.4 29 0.00064 21.7 4.4 47 77-124 83-129 (164)
197 PF10437 Lip_prot_lig_C: Bacte 60.2 24 0.00053 19.1 3.7 42 98-141 44-86 (86)
198 PF12631 GTPase_Cys_C: Catalyt 58.9 24 0.00053 18.5 3.4 45 80-124 24-72 (73)
199 KOG2301 Voltage-gated Ca2+ cha 58.7 7.4 0.00016 33.1 2.0 66 4-70 1416-1483(1592)
200 cd05833 Ribosomal_P2 Ribosomal 58.0 35 0.00076 19.8 5.2 55 8-69 4-58 (109)
201 PF07128 DUF1380: Protein of u 57.7 27 0.00057 21.2 3.7 32 95-126 26-57 (139)
202 COG2818 Tag 3-methyladenine DN 57.4 12 0.00025 23.9 2.3 47 3-51 53-99 (188)
203 COG5069 SAC6 Ca2+-binding acti 57.0 82 0.0018 23.7 6.7 59 9-70 489-547 (612)
204 TIGR00624 tag DNA-3-methyladen 57.0 7.8 0.00017 24.6 1.5 45 77-121 51-95 (179)
205 PRK00819 RNA 2'-phosphotransfe 56.7 38 0.00082 21.6 4.5 36 90-125 28-63 (179)
206 KOG0506 Glutaminase (contains 56.7 82 0.0018 23.6 7.1 59 10-70 91-157 (622)
207 KOG4070 Putative signal transd 56.4 21 0.00046 22.0 3.2 84 5-88 12-107 (180)
208 cd04411 Ribosomal_P1_P2_L12p R 56.4 37 0.0008 19.5 6.2 30 96-125 17-46 (105)
209 PRK10353 3-methyl-adenine DNA 55.6 6.3 0.00014 25.2 0.9 44 77-120 52-95 (187)
210 cd07176 terB tellurite resista 53.1 40 0.00086 18.9 5.1 80 18-100 15-98 (111)
211 PF01885 PTS_2-RNA: RNA 2'-pho 53.0 30 0.00064 22.1 3.6 38 16-55 27-64 (186)
212 PF04876 Tenui_NCP: Tenuivirus 52.8 53 0.0011 20.3 6.7 73 44-124 84-161 (175)
213 PLN00138 large subunit ribosom 51.9 47 0.001 19.4 5.2 53 8-67 4-56 (113)
214 KOG3077 Uncharacterized conser 50.2 79 0.0017 21.5 11.3 67 3-71 62-129 (260)
215 PRK00819 RNA 2'-phosphotransfe 49.9 43 0.00094 21.3 4.0 37 16-54 28-64 (179)
216 PRK13654 magnesium-protoporphy 49.6 38 0.00082 23.9 3.9 82 3-91 43-126 (355)
217 KOG3449 60S acidic ribosomal p 49.3 52 0.0011 19.1 6.6 53 8-67 4-56 (112)
218 CHL00185 ycf59 magnesium-proto 49.2 37 0.00081 23.9 3.8 82 3-91 39-122 (351)
219 PRK06402 rpl12p 50S ribosomal 48.6 52 0.0011 19.0 6.1 31 95-125 16-46 (106)
220 PF09107 SelB-wing_3: Elongati 48.6 33 0.00072 16.7 3.3 30 19-55 8-37 (50)
221 PLN02508 magnesium-protoporphy 48.3 52 0.0011 23.2 4.3 82 4-92 40-123 (357)
222 smart00513 SAP Putative DNA-bi 48.3 26 0.00056 15.3 2.5 18 95-112 3-20 (35)
223 smart00222 Sec7 Sec7 domain. D 47.4 67 0.0014 20.5 4.6 19 53-71 145-163 (187)
224 PF07499 RuvA_C: RuvA, C-termi 47.2 33 0.00071 16.3 3.8 37 99-139 4-40 (47)
225 KOG0039 Ferric reductase, NADH 46.7 90 0.002 24.4 5.9 68 39-107 14-89 (646)
226 KOG4301 Beta-dystrobrevin [Cyt 46.1 27 0.00058 24.7 2.8 57 84-141 115-171 (434)
227 PF08671 SinI: Anti-repressor 45.4 25 0.00054 15.2 1.7 11 96-106 17-27 (30)
228 PF03979 Sigma70_r1_1: Sigma-7 44.7 51 0.0011 17.8 3.5 33 19-55 19-51 (82)
229 cd01047 ACSF Aerobic Cyclase S 43.7 60 0.0013 22.7 4.1 81 4-91 24-106 (323)
230 COG2058 RPP1A Ribosomal protei 43.6 65 0.0014 18.7 5.2 39 95-138 16-54 (109)
231 TIGR00135 gatC glutamyl-tRNA(G 43.2 58 0.0013 18.0 3.5 27 96-122 1-27 (93)
232 PF02037 SAP: SAP domain; Int 42.8 33 0.00071 15.1 2.0 18 95-112 3-20 (35)
233 PF02885 Glycos_trans_3N: Glyc 42.5 49 0.0011 16.9 5.5 43 28-70 3-45 (66)
234 PF12872 OST-HTH: OST-HTH/LOTU 42.3 50 0.0011 17.0 4.8 36 19-68 21-56 (74)
235 TIGR00624 tag DNA-3-methyladen 41.7 26 0.00057 22.3 2.1 62 3-69 51-116 (179)
236 COG1460 Uncharacterized protei 41.5 51 0.0011 19.3 3.1 29 96-124 80-108 (114)
237 PF13623 SurA_N_2: SurA N-term 41.2 84 0.0018 19.2 4.5 37 105-141 99-145 (145)
238 PF09373 PMBR: Pseudomurein-bi 41.1 35 0.00076 14.8 2.2 15 93-107 2-16 (33)
239 PF11848 DUF3368: Domain of un 40.6 45 0.00097 15.9 3.8 33 92-124 14-47 (48)
240 PRK14981 DNA-directed RNA poly 40.5 75 0.0016 18.4 3.8 28 97-124 80-107 (112)
241 PRK09430 djlA Dna-J like membr 40.4 72 0.0016 21.7 4.2 10 57-66 69-78 (267)
242 KOG4403 Cell surface glycoprot 39.5 51 0.0011 24.2 3.4 88 17-108 40-130 (575)
243 COG4359 Uncharacterized conser 38.5 1.1E+02 0.0024 19.9 4.4 44 18-69 10-53 (220)
244 TIGR02029 AcsF magnesium-proto 38.2 58 0.0013 22.8 3.4 81 4-91 34-116 (337)
245 KOG4403 Cell surface glycoprot 38.2 89 0.0019 23.1 4.4 53 55-107 40-96 (575)
246 cd05831 Ribosomal_P1 Ribosomal 37.6 81 0.0018 18.0 5.2 35 91-125 13-47 (103)
247 cd08032 LARP_7 La RNA-binding 37.5 73 0.0016 17.4 3.3 18 87-104 31-48 (82)
248 PF05383 La: La domain; Inter 37.3 38 0.00082 17.2 2.0 18 120-137 20-37 (61)
249 PF08355 EF_assoc_1: EF hand a 36.7 31 0.00068 18.5 1.6 18 124-141 11-28 (76)
250 KOG2301 Voltage-gated Ca2+ cha 36.6 20 0.00043 30.8 1.3 64 75-139 1413-1480(1592)
251 PF03352 Adenine_glyco: Methyl 36.5 31 0.00067 22.0 1.9 65 3-70 47-115 (179)
252 PF12486 DUF3702: ImpA domain 36.4 42 0.0009 20.7 2.3 23 11-33 75-97 (148)
253 KOG1954 Endocytosis/signaling 35.0 81 0.0018 23.0 3.8 45 93-139 457-501 (532)
254 KOG2419 Phosphatidylserine dec 34.7 71 0.0015 25.0 3.6 64 44-107 438-533 (975)
255 cd08316 Death_FAS_TNFRSF6 Deat 34.3 91 0.002 17.6 6.8 25 98-122 69-93 (97)
256 PF08349 DUF1722: Protein of u 33.7 46 0.00099 19.4 2.2 11 94-104 84-94 (117)
257 COG5562 Phage envelope protein 33.6 27 0.00059 21.0 1.2 20 122-141 79-98 (137)
258 PF07862 Nif11: Nitrogen fixat 33.2 61 0.0013 15.3 2.8 21 97-117 28-48 (49)
259 PF06384 ICAT: Beta-catenin-in 32.7 78 0.0017 17.2 2.7 21 100-120 21-41 (78)
260 PF06648 DUF1160: Protein of u 32.0 1.2E+02 0.0025 18.1 4.5 25 27-52 39-63 (122)
261 PF13592 HTH_33: Winged helix- 30.5 79 0.0017 15.8 3.8 32 94-125 3-35 (60)
262 TIGR03573 WbuX N-acetyl sugar 30.4 2E+02 0.0043 20.4 5.2 66 27-104 276-341 (343)
263 cd08332 CARD_CASP2 Caspase act 30.3 1E+02 0.0022 17.0 3.7 46 57-107 32-77 (90)
264 PF15144 DUF4576: Domain of un 29.7 22 0.00048 19.1 0.4 34 92-125 37-70 (88)
265 PF04157 EAP30: EAP30/Vps36 fa 29.6 1.7E+02 0.0036 19.2 9.0 17 92-108 129-145 (223)
266 PRK00034 gatC aspartyl/glutamy 28.7 1.1E+02 0.0024 16.8 4.0 28 95-122 2-29 (95)
267 KOG0148 Apoptosis-promoting RN 28.6 24 0.00052 24.1 0.5 71 39-109 17-87 (321)
268 PF12983 DUF3867: Protein of u 27.7 1.7E+02 0.0037 18.7 5.7 46 21-71 3-48 (186)
269 TIGR03798 ocin_TIGR03798 bacte 27.4 96 0.0021 15.7 3.3 25 96-120 25-49 (64)
270 KOG1785 Tyrosine kinase negati 27.3 2.6E+02 0.0056 20.6 6.4 69 39-108 171-239 (563)
271 PF13608 Potyvirid-P3: Protein 27.3 93 0.002 23.0 3.2 29 5-34 289-317 (445)
272 PF09967 DUF2201: VWA-like dom 27.1 64 0.0014 19.0 2.1 19 90-108 5-23 (126)
273 PF09851 SHOCT: Short C-termin 27.0 66 0.0014 13.7 2.1 12 93-104 14-25 (31)
274 PF05788 Orbi_VP1: Orbivirus R 26.9 92 0.002 25.9 3.3 40 89-128 1131-1170(1301)
275 cd08033 LARP_6 La RNA-binding 26.6 1.1E+02 0.0024 16.5 2.7 34 88-121 27-60 (77)
276 KOG4629 Predicted mechanosensi 26.4 2.3E+02 0.0049 22.7 5.1 54 80-140 405-458 (714)
277 cd07894 Adenylation_RNA_ligase 26.1 1.3E+02 0.0028 21.4 3.7 97 15-113 135-244 (342)
278 PF09415 CENP-X: CENP-S associ 25.8 1.2E+02 0.0025 16.1 3.7 39 62-107 28-67 (72)
279 COG2036 HHT1 Histones H3 and H 25.8 1.3E+02 0.0029 16.8 6.0 80 25-110 7-86 (91)
280 KOG1954 Endocytosis/signaling 25.7 98 0.0021 22.7 3.0 25 6-30 478-502 (532)
281 cd05832 Ribosomal_L12p Ribosom 25.5 1.5E+02 0.0032 17.2 6.0 31 95-125 16-46 (106)
282 KOG3042 Panthothenate syntheta 25.5 1.5E+02 0.0033 19.7 3.5 47 91-137 191-248 (283)
283 PF07492 Trehalase_Ca-bi: Neut 25.4 14 0.0003 15.9 -0.7 15 11-25 5-19 (30)
284 COG1423 ATP-dependent DNA liga 25.3 1.5E+02 0.0033 21.3 3.8 94 13-108 173-280 (382)
285 PF03732 Retrotrans_gag: Retro 25.3 1.2E+02 0.0026 16.1 4.2 14 59-72 26-39 (96)
286 PF09312 SurA_N: SurA N-termin 25.3 1.4E+02 0.0029 17.3 3.2 16 19-34 10-25 (118)
287 PF08044 DUF1707: Domain of un 25.2 1E+02 0.0022 15.2 3.0 30 18-49 20-49 (53)
288 TIGR01529 argR_whole arginine 25.1 1.7E+02 0.0037 17.9 4.2 36 91-126 12-47 (146)
289 TIGR03685 L21P_arch 50S riboso 24.9 1.5E+02 0.0032 17.1 5.3 31 95-125 16-46 (105)
290 PF04695 Pex14_N: Peroxisomal 24.9 1.7E+02 0.0036 17.6 5.7 48 79-128 4-51 (136)
291 COG1859 KptA RNA:NAD 2'-phosph 24.9 2E+02 0.0044 19.0 4.1 37 90-126 54-90 (211)
292 PF01369 Sec7: Sec7 domain; I 24.8 1.9E+02 0.0042 18.4 4.3 60 19-88 124-185 (190)
293 KOG1785 Tyrosine kinase negati 24.5 3E+02 0.0064 20.4 7.5 84 20-108 189-275 (563)
294 PF06207 DUF1002: Protein of u 24.1 1.9E+02 0.0041 19.3 3.9 48 23-70 173-222 (225)
295 smart00549 TAFH TAF homology. 24.1 1.4E+02 0.003 16.8 2.8 11 21-31 39-49 (92)
296 PF08006 DUF1700: Protein of u 24.0 1.3E+02 0.0027 19.0 3.1 47 22-70 1-51 (181)
297 PF12949 HeH: HeH/LEM domain; 23.8 67 0.0015 14.4 1.3 18 95-112 3-20 (35)
298 TIGR01446 DnaD_dom DnaD and ph 23.7 1.2E+02 0.0026 15.6 2.8 9 114-122 32-40 (73)
299 PF08485 Polysacc_syn_2C: Poly 23.2 1E+02 0.0022 15.0 2.0 21 14-34 24-44 (48)
300 cd08327 CARD_RAIDD Caspase act 23.1 1.5E+02 0.0033 16.6 3.8 46 57-107 33-78 (94)
301 PF10982 DUF2789: Protein of u 23.0 1.4E+02 0.003 16.1 3.4 31 98-128 5-35 (74)
302 PF11020 DUF2610: Domain of un 23.0 84 0.0018 17.1 1.8 32 109-140 43-74 (82)
303 cd08330 CARD_ASC_NALP1 Caspase 22.8 1.4E+02 0.0031 16.1 3.9 49 56-109 26-74 (82)
304 PF11829 DUF3349: Protein of u 22.7 1.6E+02 0.0035 16.7 3.6 48 22-71 20-70 (96)
305 PF13099 DUF3944: Domain of un 22.6 94 0.002 14.0 2.3 16 79-94 16-31 (35)
306 PF08100 Dimerisation: Dimeris 22.6 1.1E+02 0.0025 14.9 2.3 22 11-32 12-33 (51)
307 TIGR01209 RNA ligase, Pab1020 22.3 2E+02 0.0044 20.9 4.0 104 11-116 163-280 (374)
308 PHA02771 hypothetical protein; 21.9 1.6E+02 0.0035 16.4 3.9 13 112-124 32-44 (90)
309 PF01316 Arg_repressor: Argini 21.9 1.4E+02 0.003 15.7 3.7 32 94-125 18-49 (70)
310 PF02459 Adeno_terminal: Adeno 21.7 3.4E+02 0.0073 20.9 5.1 47 82-128 458-504 (548)
311 KOG0113 U1 small nuclear ribon 21.6 1.3E+02 0.0028 21.1 2.8 46 80-125 80-126 (335)
312 cd00171 Sec7 Sec7 domain; Doma 21.5 2.3E+02 0.005 18.0 10.0 39 87-125 141-181 (185)
313 PF06226 DUF1007: Protein of u 21.3 1.1E+02 0.0023 20.0 2.4 24 85-108 56-79 (212)
314 PF14164 YqzH: YqzH-like prote 21.1 1.4E+02 0.0031 15.5 3.7 31 78-108 7-38 (64)
315 PF00690 Cation_ATPase_N: Cati 20.9 1.4E+02 0.003 15.2 4.2 32 22-55 4-36 (69)
316 PF03986 Autophagy_N: Autophag 20.8 68 0.0015 19.7 1.3 12 93-104 25-36 (145)
317 PF09454 Vps23_core: Vps23 cor 20.7 58 0.0013 16.9 0.9 13 129-141 37-49 (65)
318 PF11593 Med3: Mediator comple 20.6 2.4E+02 0.0052 20.4 4.0 11 60-70 8-18 (379)
319 KOG3442 Uncharacterized conser 20.6 2.1E+02 0.0045 17.2 3.8 12 94-105 54-65 (132)
320 PF14178 YppF: YppF-like prote 20.6 1.2E+02 0.0026 15.5 2.0 15 94-108 35-49 (60)
321 PF11363 DUF3164: Protein of u 20.3 2.6E+02 0.0056 18.2 6.4 19 87-105 127-145 (195)
322 PF13075 DUF3939: Protein of u 20.1 56 0.0012 19.8 0.9 19 90-108 36-54 (140)
323 PF03874 RNA_pol_Rpb4: RNA pol 20.1 1.4E+02 0.003 17.1 2.5 9 96-104 71-79 (117)
324 cd08029 LA_like_fungal La-moti 20.0 1.6E+02 0.0036 15.7 3.0 19 88-106 27-45 (76)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=150.60 Aligned_cols=135 Identities=30% Similarity=0.565 Sum_probs=127.3
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-ChHHHHHHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA-SAEEKLKDLR 82 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-~~~~~~~~~~ 82 (142)
.++|+++|+.+|++++|.|+..+|..+++.+ |..++..++..++..++. +.+.|++.+|+.++... ......+++.
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~~el~~ilr~l--g~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSL--GFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHc--CCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 3689999999999999999999999999988 999999999999999999 88999999999999865 3556678999
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.+|+.||.+++|+|+..+++.++..+|..+++++++.++..++.+.+|.|+|++|.+.+
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999865
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=7e-28 Score=146.77 Aligned_cols=138 Identities=38% Similarity=0.684 Sum_probs=127.6
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChH-----HH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAE-----EK 77 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~-----~~ 77 (142)
...+++++|+.+|.+++|.|+..++..+++.+ |..++..++..++..+|.+++|.|++.+|+..+...... ..
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~l--g~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~ 83 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSL--GQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEAS 83 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccccc
Confidence 35679999999999999999999999999999 999999999999999999999999999999998854221 13
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhhC
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMMQ 142 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 142 (142)
.+.+..+|+.+|.+++|+||..||+.+|..+|.+.+.+++..+++.++.|.+|.|+|++|++.+.
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 45899999999999999999999999999999999999999999999999999999999998763
No 3
>PTZ00183 centrin; Provisional
Probab=99.93 E-value=1.2e-24 Score=133.57 Aligned_cols=138 Identities=35% Similarity=0.580 Sum_probs=124.6
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-ChHHHHHHH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA-SAEEKLKDL 81 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-~~~~~~~~~ 81 (142)
..+++..+|..+|.+++|.|+..+|..+++.+ |..++...+..++..+|.+++|.|++.+|+..+... ........+
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~--g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l 92 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSL--GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEI 92 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHH
Confidence 35678899999999999999999999999998 988899999999999999999999999999887642 122334678
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhhC
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMMQ 142 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 142 (142)
..+|..+|.+++|.|+..||..++...|.+++..++..++..++.+++|.|++++|..+++
T Consensus 93 ~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 93 LKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999998873
No 4
>PTZ00184 calmodulin; Provisional
Probab=99.93 E-value=3.9e-24 Score=130.06 Aligned_cols=136 Identities=32% Similarity=0.624 Sum_probs=123.5
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-ChHHHHHHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA-SAEEKLKDLR 82 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-~~~~~~~~~~ 82 (142)
.+.++..|..+|.+++|.|+.++|..++..+ +..++...+..++..++.+++|.|++++|+..+... ........+.
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSL--GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHh--CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 4678899999999999999999999999988 888889999999999999999999999999988743 2223446788
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.+|..+|.+++|.|+.++|..++...|.+++..++..++..++.+++|.|+|++|+.++
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876
No 5
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=8.4e-24 Score=124.82 Aligned_cols=137 Identities=31% Similarity=0.489 Sum_probs=127.6
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-ChHHHHHHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA-SAEEKLKDLR 82 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-~~~~~~~~~~ 82 (142)
.++++..|..+|++++|+|+.++|.-+.+.+ |+.+...++..++.-+|+++.|.|++.+|...+... ......+++.
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmral--GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRAL--GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHc--CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 4789999999999999999999999999999 999999999999999999999999999999886643 3334778999
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhhC
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMMQ 142 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 142 (142)
.+|+.+|.+++|.|+..+|+.+...+|..++++++..++..++.+.+|.|+-++|...++
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999998764
No 6
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.91 E-value=1.7e-22 Score=118.55 Aligned_cols=134 Identities=16% Similarity=0.357 Sum_probs=122.8
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-ChHHHHHHH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA-SAEEKLKDL 81 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-~~~~~~~~~ 81 (142)
+-++++++|...|.|++|.|+.++++..+.++ |-.++++++..++... +|.|+|.-|+..+... .....++.+
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSl--Gk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I 103 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASL--GKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVI 103 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHc--CCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHH
Confidence 34678899999999999999999999999999 9999999999998866 5789999999998855 445557889
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhhC
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMMQ 142 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 142 (142)
..+|..||++++|+|..+.++++|...|.++++++++.+++.+..+..|.++|..|+..++
T Consensus 104 ~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 104 LNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988763
No 7
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.90 E-value=1.9e-22 Score=116.46 Aligned_cols=136 Identities=22% Similarity=0.442 Sum_probs=123.3
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC--CCCcccHHHHHHHHhcC---ChHHH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD--GDGFLDLEDLVGLIEGA---SAEEK 77 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~--~~g~v~~~ef~~~~~~~---~~~~~ 77 (142)
+..+++++|..||..++|+|+..+...+|+.+ |..++..++...+..+.++ +-.+++|++|+..++.. .....
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRal--G~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRAL--GQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHh--cCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 34789999999999999999999999999999 9999999999999999877 45789999999988743 45556
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.++...-.+.||++++|.|...|++++|..+|..++++++..++.... |.+|.|+|+.|++.+
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 678888899999999999999999999999999999999999999887 788999999999875
No 8
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.89 E-value=7.5e-22 Score=122.35 Aligned_cols=130 Identities=20% Similarity=0.394 Sum_probs=120.4
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHH
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREA 84 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~ 84 (142)
.++..+|+..|.+++|.|+.+|+..+|...- ....+.+.++.|+..+|.+..|+|.+.||..++.. ...|+.+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~-~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~------i~~Wr~v 129 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGT-WSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY------INQWRNV 129 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCC-CCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH------HHHHHHH
Confidence 3678899999999999999999999998551 45678999999999999999999999999999985 7789999
Q ss_pred hchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 85 FGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 85 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
|..+|.|++|.|+..||+++|..+|..++++..+.+++.++.-..|.|.+++|++++
T Consensus 130 F~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 130 FRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCC 186 (221)
T ss_pred HHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHH
Confidence 999999999999999999999999999999999999999997779999999999875
No 9
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-19 Score=112.90 Aligned_cols=138 Identities=21% Similarity=0.392 Sum_probs=118.3
Q ss_pred chhHHHHHHHHhcCC-CCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHH
Q 032375 3 KGREYERVFVYFDEN-GDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDL 81 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~ 81 (142)
+.++++.+|+.|-.+ .+|.++.++|+.++..++ ...-+...+..+|+.+|.+++|.|++.||+..+.........+.+
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~f-p~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl 102 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFF-PDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKL 102 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHC-CCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHh
Confidence 467889999998765 489999999999999994 356678889999999999999999999999999877666677788
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHh----CC------C-CCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKL----GE------S-KSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~------~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
..+|++||.+++|+|+..|+..++... |. . ...+-+..+|+.+|.|++|.||++||....
T Consensus 103 ~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 103 KWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred hhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 888999999999999999999999875 32 1 124456899999999999999999998764
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.82 E-value=7.2e-19 Score=118.09 Aligned_cols=131 Identities=21% Similarity=0.389 Sum_probs=122.2
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCC-CcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGD-VLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLR 82 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~ 82 (142)
..+++.+|+.+|.+++|.++..++.+.+..+ +.+ +.......++..+|.+.+|.|+|++|...+.. .+..+.
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l--~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~ 85 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKL--DHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELY 85 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhc--CCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHH
Confidence 4578889999999999999999999999999 666 77889999999999999999999999999984 466788
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.+|+..|.+++|.|..+|+.+.|+.+|..++++++..+++.+|+++++.|+++||..++
T Consensus 86 ~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 86 RIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999998875
No 11
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.82 E-value=8e-19 Score=108.99 Aligned_cols=131 Identities=33% Similarity=0.538 Sum_probs=106.4
Q ss_pred hHHHHHHHHhcCC-CCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCc-ccHHHHHHHHhcCChHHHH-HHH
Q 032375 5 REYERVFVYFDEN-GDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGF-LDLEDLVGLIEGASAEEKL-KDL 81 (142)
Q Consensus 5 ~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~-v~~~ef~~~~~~~~~~~~~-~~~ 81 (142)
..+...|..++.+ ++|.|+.+||..+.... .......++..++..++|. |++++|+..+......... +.+
T Consensus 33 ~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~------~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 33 ERLYERFKKLDRNNGDGYLTKEEFLSIPELA------LNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred HHHHHHHHHhccccccCccCHHHHHHHHHHh------cCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 4566778889998 99999999999988443 2344577888888887777 9999999999865333333 589
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHh-CCCCC--HHH----HHHHHHhcCCCCCccccHHHHHhhh
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKL-GESKS--IDE----CRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~--~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
+.+|++||.+++|+|+.+|+.+++..+ +...+ ++. ++..+..+|.+++|+|+++||.+++
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 999999999999999999999999986 44444 333 4677889999999999999999875
No 12
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.60 E-value=2e-14 Score=97.96 Aligned_cols=136 Identities=23% Similarity=0.305 Sum_probs=110.1
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCC----------
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGAS---------- 73 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~---------- 73 (142)
...+..-|+.+|...+|+|+..++..++..+. |+.++...+..-+ ...+.+|.|.|.+....+....
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~-~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slv 539 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENIT-GLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLV 539 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHh-cCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHH
Confidence 45788889999999999999999999998886 8888765554322 2335678899988877665221
Q ss_pred --hHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh----CCCCCHHHHHHHHHhcCCCCCccccHHHHHhhhC
Q 032375 74 --AEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL----GESKSIDECRMMIDRFDLNGDGVLSFEEFRIMMQ 142 (142)
Q Consensus 74 --~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 142 (142)
.......++.+|...|.|++|.|+.+||+.++.-+ ..++++.++..+.+.+|.|++|.|+++||+++++
T Consensus 540 etLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 540 ETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 11223457889999999999999999999998876 4578899999999999999999999999999874
No 13
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.1e-14 Score=95.62 Aligned_cols=133 Identities=23% Similarity=0.310 Sum_probs=110.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCC-CcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCC-----hHHHHH
Q 032375 6 EYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGD-VLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGAS-----AEEKLK 79 (142)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~-----~~~~~~ 79 (142)
.-++.|+..|.|++|.++.+||..+|.-- .++ +..-.+.+.+.-.|++++|.|+++||+.-+-... +.....
T Consensus 164 rDe~rFk~AD~d~dg~lt~EEF~aFLHPE--e~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~ 241 (325)
T KOG4223|consen 164 RDEERFKAADQDGDGSLTLEEFTAFLHPE--EHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLT 241 (325)
T ss_pred HHHHHHhhcccCCCCcccHHHHHhccChh--hcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccc
Confidence 44677999999999999999999988765 433 4456778889999999999999999997665322 222233
Q ss_pred HHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhh
Q 032375 80 DLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIM 140 (142)
Q Consensus 80 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 140 (142)
+..+.+...|.|++|+++.+|++..+..-+......+.+.++...|.|++|++|++|.+..
T Consensus 242 Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~ 302 (325)
T KOG4223|consen 242 EREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEH 302 (325)
T ss_pred cHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhC
Confidence 4567788999999999999999998888788888999999999999999999999998753
No 14
>PLN02964 phosphatidylserine decarboxylase
Probab=99.58 E-value=4.7e-14 Score=101.82 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=86.5
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCC-CCCcHHH---HHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGG-GDVLLNE---VEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLK 79 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~---~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~ 79 (142)
.++++++|..+|++++|.+ +..+++.+ | ..+++.+ ++.++..+|.+++|.|++.||+.++.........+
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrsl--G~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seE 215 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSC--SIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAAN 215 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHh--CCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHH
Confidence 4678899999999999997 88888888 8 4777776 79999999999999999999999988654445567
Q ss_pred HHHHHhchhcCCCCCccCHHHHHHHHHH
Q 032375 80 DLREAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 80 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
++..+|+.+|.+++|.|+.+||..++..
T Consensus 216 EL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 216 KKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 8999999999999999999999999988
No 15
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.56 E-value=2.6e-14 Score=78.97 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=59.6
Q ss_pred HHHHHHHhchhcC-CCCCccCHHHHHHHHHH-hCCCCCH-HHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDF-DNRGFISPNDLKRMLAK-LGESKSI-DECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+..+|+.||. +++|+|+..||+.++.. +|..++. .+++.+++.+|.|++|+|+|+||+.++
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~ 73 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELI 73 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 4568899999999 99999999999999999 8877887 899999999999999999999999876
No 16
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.53 E-value=5.2e-14 Score=74.09 Aligned_cols=61 Identities=43% Similarity=0.734 Sum_probs=53.6
Q ss_pred HHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHH----HHHHHHhcCCCCCccccHHHHHhhh
Q 032375 81 LREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDE----CRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 81 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
++.+|..+|.+++|+|+.+||..++..++...+... +..+++.+|.|++|.|+++||++++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 678999999999999999999999999987665544 4555999999999999999999875
No 17
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.51 E-value=2e-13 Score=83.22 Aligned_cols=101 Identities=30% Similarity=0.513 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCC-----CHHH
Q 032375 42 LNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESK-----SIDE 116 (142)
Q Consensus 42 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-----~~~~ 116 (142)
..++...|..+|.+++|.|+..++..++...........+..++..+|.+++|.|+..+|..++...+... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 45778899999999999999999999999887777888999999999999999999999999999865432 3559
Q ss_pred HHHHHHhcCCCCCccccHHHHHhhhC
Q 032375 117 CRMMIDRFDLNGDGVLSFEEFRIMMQ 142 (142)
Q Consensus 117 ~~~~~~~~d~~~~g~i~~~ef~~~l~ 142 (142)
+..+|+.+|.+++|.|+..|+..+|+
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~ 112 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLT 112 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHH
Confidence 99999999999999999999998763
No 18
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.51 E-value=1.6e-13 Score=85.61 Aligned_cols=86 Identities=23% Similarity=0.403 Sum_probs=67.3
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLRE 83 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~ 83 (142)
-.+|+.+|..+|.|++|.|+..||+.+|..+ |..++++..+.+++++++..+|.|.+.+|+.++.. ...+.+
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~--Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~------L~~lt~ 194 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQL--GYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV------LQRLTE 194 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHc--CcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH------HHHHHH
Confidence 3567788888888888888888888888888 88888888888888888776778888888887763 556777
Q ss_pred HhchhcCCCCCccC
Q 032375 84 AFGLYDFDNRGFIS 97 (142)
Q Consensus 84 ~f~~~d~~~~g~i~ 97 (142)
+|+.+|.+..|.|+
T Consensus 195 ~Fr~~D~~q~G~i~ 208 (221)
T KOG0037|consen 195 AFRRRDTAQQGSIT 208 (221)
T ss_pred HHHHhccccceeEE
Confidence 78888887777554
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.50 E-value=6e-13 Score=80.46 Aligned_cols=103 Identities=20% Similarity=0.341 Sum_probs=93.1
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLR 82 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~ 82 (142)
..+.+.++|..+|. +.+.|+..+|..++.... ....+++++...|+.+|.+++|+|+..++..++.........+.+.
T Consensus 54 s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~-~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~ 131 (160)
T COG5126 54 SEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL-KRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVE 131 (160)
T ss_pred cHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh-ccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHH
Confidence 56778899999999 899999999999998774 5667799999999999999999999999999999887777888999
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHH
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
.++..+|++++|.|+.++|.+.+..
T Consensus 132 ~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 132 KLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHHhcCCCCCceEeHHHHHHHHhc
Confidence 9999999999999999999987654
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.49 E-value=2.4e-13 Score=75.21 Aligned_cols=64 Identities=23% Similarity=0.450 Sum_probs=59.1
Q ss_pred HHHHHHHhchhc-CCCCC-ccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYD-FDNRG-FISPNDLKRMLAK-----LGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+..+|+.|| .+++| .|+.+||+.+|+. +|...++.+++.+++.+|.|++|+|+|++|+.++
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li 77 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFV 77 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 456889999998 79999 6999999999999 7888899999999999999999999999999875
No 21
>PTZ00183 centrin; Provisional
Probab=99.48 E-value=1e-12 Score=80.61 Aligned_cols=104 Identities=23% Similarity=0.311 Sum_probs=87.9
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLR 82 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~ 82 (142)
....+..+|..+|.+++|.|+..+|..++.... ........+..+|..+|.+++|.|+..+|..++...........+.
T Consensus 51 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~-~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~ 129 (158)
T PTZ00183 51 KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL-GERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQ 129 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh-cCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 345688899999999999999999998876653 3445677899999999999999999999999987544344566788
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHH
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
.+|..+|.+++|.|+.++|..++..
T Consensus 130 ~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 130 EMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 9999999999999999999998865
No 22
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.48 E-value=3.5e-13 Score=70.91 Aligned_cols=62 Identities=24% Similarity=0.584 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcH----HHHHHHHHhhcCCCCCcccHHHHHHHH
Q 032375 6 EYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLL----NEVEVAIESLDKDGDGFLDLEDLVGLI 69 (142)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~l~~~~d~~~~g~v~~~ef~~~~ 69 (142)
+++++|+.+|.+++|.|+.+||..++..+ +...+. ..+..++..+|++++|.|++.||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL--GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT--TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh--cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47899999999999999999999999999 766544 455556888899999999999998764
No 23
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=8.5e-13 Score=86.82 Aligned_cols=136 Identities=22% Similarity=0.280 Sum_probs=108.7
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC----------
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA---------- 72 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~---------- 72 (142)
++..+..++...|.+++|.|+..++..-+... .-.....+...-+..+|.+.+|.|+|++++...-..
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s--~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQS--QKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHH--HHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 45678899999999999999999999887766 334445667778888899999999999999876521
Q ss_pred ----ChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCccccHHHHHhh
Q 032375 73 ----SAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLG-ESKSIDECRMMIDRFDLNGDGVLSFEEFRIM 140 (142)
Q Consensus 73 ----~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 140 (142)
........-+.-|..-|.+++|.+|.+||..+|...- ..+..-.+..-+...|+|++|.|+++||+.=
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGD 225 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhH
Confidence 1112223345679999999999999999999998753 4556666788899999999999999999863
No 24
>PTZ00184 calmodulin; Provisional
Probab=99.42 E-value=4.1e-12 Score=77.03 Aligned_cols=102 Identities=20% Similarity=0.332 Sum_probs=85.0
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLRE 83 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~ 83 (142)
...+..+|..+|.+++|.|+.++|..++.... ........+..+|..+|.+++|.|+..+|..++...........+..
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~-~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 124 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKM-KDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDE 124 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc-cCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHH
Confidence 45788899999999999999999999887652 33455678899999999999999999999998875433334567888
Q ss_pred HhchhcCCCCCccCHHHHHHHHH
Q 032375 84 AFGLYDFDNRGFISPNDLKRMLA 106 (142)
Q Consensus 84 ~f~~~d~~~~g~i~~~e~~~~l~ 106 (142)
+|..+|.+++|.|+.+||..++.
T Consensus 125 ~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 125 MIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHhcCCCCCCcCcHHHHHHHHh
Confidence 99999999999999999988764
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.41 E-value=2e-12 Score=71.48 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=59.9
Q ss_pred hHHHHHHHHhcC-CCCCcccHHHHHHHHhh-hhCCCCCcH-HHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 5 REYERVFVYFDE-NGDGKVSPSEIKNRMGM-IVGGGDVLL-NEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 5 ~~~~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~~~-~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
..+..+|+.||. +++|+|+..||+.++.. + |..++. .++..+++..|.+++|.|+|.||+..+..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~el--g~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQL--PHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHh--hhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 568899999999 99999999999999999 7 776777 99999999999999999999999988874
No 26
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.40 E-value=3.8e-12 Score=79.46 Aligned_cols=100 Identities=21% Similarity=0.342 Sum_probs=84.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-----------Ch
Q 032375 6 EYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA-----------SA 74 (142)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-----------~~ 74 (142)
-...+|+.+|.+++|.|+..||..+|..+ ..+..++-+.-.|+.+|.+++|.|++.|++.++... ..
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~--~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~ 142 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLT--SRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDE 142 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHH--cCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccc
Confidence 34678999999999999999999999988 566667777777999999999999999999887621 13
Q ss_pred HHHHHHHHHHhchhcCCCCCccCHHHHHHHHHH
Q 032375 75 EEKLKDLREAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 75 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
....+....+|..+|.+++|.||.+||......
T Consensus 143 ~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 143 ETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 345667888999999999999999999988755
No 27
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.40 E-value=3.5e-12 Score=70.52 Aligned_cols=64 Identities=22% Similarity=0.399 Sum_probs=57.5
Q ss_pred HHHHHHHhchhcC-CC-CCccCHHHHHHHHHH---hCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDF-DN-RGFISPNDLKRMLAK---LGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+-.+|+.|+. ++ +|+|+.+||+.++.. +|..++++++..+++.+|.|++|+|+|+||+.++
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm 77 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFL 77 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence 3457788999997 66 899999999999973 6888999999999999999999999999999876
No 28
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.37 E-value=3.9e-12 Score=71.49 Aligned_cols=64 Identities=28% Similarity=0.467 Sum_probs=57.4
Q ss_pred HHHHHHHhchhcC-CC-CCccCHHHHHHHHHH-----hCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDF-DN-RGFISPNDLKRMLAK-----LGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+..+|..+|. ++ +|.|+.+|++.++.. +|..++..++..++..+|.+++|.|+|++|++++
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4568889999997 87 799999999999986 4667899999999999999999999999999875
No 29
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.37 E-value=7e-12 Score=69.34 Aligned_cols=65 Identities=26% Similarity=0.410 Sum_probs=59.7
Q ss_pred hHHHHHHHHhc-CCCCC-cccHHHHHHHHhh-----hhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 5 REYERVFVYFD-ENGDG-KVSPSEIKNRMGM-----IVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 5 ~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
..+.++|+.|| .+++| .|+..+|+.+++. + |..+++.++..+++.+|.+++|.|+|.+|+..+..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l--g~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL--EEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh--cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 57889999998 79999 6999999999998 6 88889999999999999999999999999988763
No 30
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.36 E-value=5.7e-12 Score=70.55 Aligned_cols=64 Identities=27% Similarity=0.486 Sum_probs=56.7
Q ss_pred HHHHHHHhchhc-CCCCC-ccCHHHHHHHHHH-hC----CCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYD-FDNRG-FISPNDLKRMLAK-LG----ESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.+.+..+|+.|| .+++| .|+..|++.+|+. +| ..++.++++.++..+|.+++|.|+|++|+.++
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~ 78 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLV 78 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHH
Confidence 456889999997 99999 5999999999986 54 35688999999999999999999999999875
No 31
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.36 E-value=3.5e-12 Score=64.36 Aligned_cols=50 Identities=40% Similarity=0.678 Sum_probs=47.4
Q ss_pred CCCccCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 92 NRGFISPNDLKRMLAKLGES-KSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 92 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
++|.|+.++|+.++..+|.. ++++++..++..+|.+++|.|+|+||+.++
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 47999999999999878998 999999999999999999999999999986
No 32
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.35 E-value=7.7e-12 Score=70.03 Aligned_cols=64 Identities=23% Similarity=0.403 Sum_probs=55.1
Q ss_pred HHHHHHHhchhc-CCCCC-ccCHHHHHHHHHH-h----CCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYD-FDNRG-FISPNDLKRMLAK-L----GESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+..+|+.|| .+++| +|+..||+.++.. . +...++.++..++..+|.|++|.|+|+||+.++
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~ 79 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLV 79 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 345778899999 78998 5999999999976 3 334578899999999999999999999999876
No 33
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.31 E-value=1.6e-11 Score=68.22 Aligned_cols=66 Identities=23% Similarity=0.487 Sum_probs=57.7
Q ss_pred HHHHHHHHHhchhcC--CCCCccCHHHHHHHHHH-hCCC----CCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 76 EKLKDLREAFGLYDF--DNRGFISPNDLKRMLAK-LGES----KSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 76 ~~~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+.+..+|..+|. +++|.|+.+++..++.. +|.. .+..++..++..++.+++|.|+|++|+.++
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~ 77 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLI 77 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHH
Confidence 345678889999999 89999999999999986 5543 458999999999999999999999999876
No 34
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.30 E-value=1.6e-11 Score=64.59 Aligned_cols=58 Identities=33% Similarity=0.408 Sum_probs=52.9
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
+.+|..+|.+++|.|+.+|+..++...|. +.+++..++..++.+++|.|++++|+.++
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~ 59 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAM 59 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHH
Confidence 46799999999999999999999998874 88889999999999999999999999875
No 35
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.30 E-value=2.8e-11 Score=68.29 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=57.7
Q ss_pred HHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 76 EKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 76 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.....+..+|..+|.+++|.|+.++++.+++..| ++..++..++..++.+.+|.|++++|+.++
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAM 70 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Confidence 3456788999999999999999999999999865 678899999999999999999999999876
No 36
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.29 E-value=3.6e-11 Score=61.98 Aligned_cols=62 Identities=48% Similarity=0.711 Sum_probs=57.8
Q ss_pred HHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhhC
Q 032375 81 LREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMMQ 142 (142)
Q Consensus 81 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 142 (142)
+..+|..+|.+++|.|+.+++..++...+.+.+...+..++..++.+++|.|++++|+.+++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999999999999999998764
No 37
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.28 E-value=5.4e-11 Score=70.03 Aligned_cols=97 Identities=32% Similarity=0.542 Sum_probs=80.3
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHhcC-ChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh-CCCCCHHHH----H
Q 032375 45 VEVAIESLDKDGDGFLDLEDLVGLIEGA-SAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL-GESKSIDEC----R 118 (142)
Q Consensus 45 ~~~l~~~~d~~~~g~v~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~----~ 118 (142)
-+++...+..++.|.+++.+|+..+.-. ..-++.-.+..+|+.||-++++.|...++...+..+ ...++++++ +
T Consensus 73 k~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~e 152 (189)
T KOG0038|consen 73 KRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICE 152 (189)
T ss_pred HHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 3567788889999999999999987633 233445567889999999999999999999999987 456787775 6
Q ss_pred HHHHhcCCCCCccccHHHHHhhh
Q 032375 119 MMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 119 ~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.++..+|.+++|++++.+|...+
T Consensus 153 kvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 153 KVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HHHHHhcCCCCCcccHHHHHHHH
Confidence 67889999999999999997653
No 38
>PLN02964 phosphatidylserine decarboxylase
Probab=99.28 E-value=1e-10 Score=84.85 Aligned_cols=120 Identities=15% Similarity=0.237 Sum_probs=88.6
Q ss_pred cccHHHHHHHHhhhhCC-CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc-CChHHHHHHHHHHhchhcCCCCCccCH
Q 032375 21 KVSPSEIKNRMGMIVGG-GDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG-ASAEEKLKDLREAFGLYDFDNRGFISP 98 (142)
Q Consensus 21 ~i~~~e~~~~l~~~~~~-~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~-~~~~~~~~~~~~~f~~~d~~~~g~i~~ 98 (142)
.++.+++......-... ..-...++.+.|..+|++++|.+ ....+..+.. .........+..+|..+|.+++|.|+.
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~Idf 198 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSF 198 (644)
T ss_pred CCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcH
Confidence 45566665554431001 11123566778889999999987 4444444431 222222234889999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 99 NDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 99 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
+||..++..++...+++++..+|+.+|.|++|.|+++||..+|
T Consensus 199 dEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL 241 (644)
T PLN02964 199 SEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALL 241 (644)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHH
Confidence 9999999998877889999999999999999999999999876
No 39
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=99.27 E-value=6.7e-11 Score=81.34 Aligned_cols=131 Identities=16% Similarity=0.270 Sum_probs=103.2
Q ss_pred hhHHHHH---HHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhc----CCCCCcccHHHHHHHHhcCChHH
Q 032375 4 GREYERV---FVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLD----KDGDGFLDLEDLVGLIEGASAEE 76 (142)
Q Consensus 4 ~~~~~~~---f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d----~~~~g~v~~~ef~~~~~~~~~~~ 76 (142)
.+....+ |-.+|++++|.|+.+++...-.. .++..-++++|...- ...+|+++|++|+.++.+.....
T Consensus 274 ~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~-----tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~ 348 (493)
T KOG2562|consen 274 YEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH-----TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD 348 (493)
T ss_pred HHHHHHHHHHHhhhccccccccCHHHHHHHhcc-----chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC
Confidence 3445555 66689999999999999887533 356778888998332 33678999999999998776666
Q ss_pred HHHHHHHHhchhcCCCCCccCHHHHHHHHHHh-------CC-C-CCHHHHHHHHHhcCCCCCccccHHHHHh
Q 032375 77 KLKDLREAFGLYDFDNRGFISPNDLKRMLAKL-------GE-S-KSIDECRMMIDRFDLNGDGVLSFEEFRI 139 (142)
Q Consensus 77 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~~-~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 139 (142)
...-++..|+.+|.+++|.|+..|++-+.+.. |. . .-+..+..++..+.+...++|++++|..
T Consensus 349 t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 349 TPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 66779999999999999999999999887764 21 2 2255567888888888899999999975
No 40
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.2e-10 Score=69.49 Aligned_cols=104 Identities=20% Similarity=0.309 Sum_probs=92.3
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLR 82 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~ 82 (142)
..+++.++....|.+++|.|+.++|+....... +..-+.+++...|+.+|.+.+|.|++.+|..+...+......+++.
T Consensus 67 ~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~-~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~ 145 (172)
T KOG0028|consen 67 KKEEILKLLADVDKEGSGKITFEDFRRVMTVKL-GERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELM 145 (172)
T ss_pred chHHHHHHHHhhhhccCceechHHHHHHHHHHH-hccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHH
Confidence 356777888889999999999999999976665 6666999999999999999999999999999998877767778899
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHH
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
.+..-.|.+++|-|+.+||..+++.
T Consensus 146 eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 146 EMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999999999988764
No 41
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.25 E-value=8e-11 Score=65.89 Aligned_cols=68 Identities=25% Similarity=0.399 Sum_probs=58.1
Q ss_pred hhHHHHHHHHhc-CCCCC-cccHHHHHHHHhh-hh--CCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 4 GREYERVFVYFD-ENGDG-KVSPSEIKNRMGM-IV--GGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 4 ~~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~~--~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
...+.++|+.+| .+++| .|+..+++.+++. +- .+..++..++..++..+|.+++|.|+|.+|+.++..
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 467899999997 99999 5999999999986 40 033568899999999999999999999999988774
No 42
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.24 E-value=7.9e-11 Score=66.16 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=58.6
Q ss_pred hhHHHHHHHHhcC-CC-CCcccHHHHHHHHhhhhC---CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 4 GREYERVFVYFDE-NG-DGKVSPSEIKNRMGMIVG---GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 4 ~~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
...+..+|..+|. ++ +|.|+..|++.+++...+ |..++..++..++..+|.+++|.|++.+|+..+..
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3578899999997 87 699999999999986210 66788999999999999999999999999988874
No 43
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.24 E-value=3.6e-10 Score=70.61 Aligned_cols=100 Identities=24% Similarity=0.374 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCCCCc-ccHHHHHHHHhhhhCCCCCcH-HHHHHHHHhhcCCCCCcccHHHHHHHHhcC-----C--hHHH
Q 032375 7 YERVFVYFDENGDGK-VSPSEIKNRMGMIVGGGDVLL-NEVEVAIESLDKDGDGFLDLEDLVGLIEGA-----S--AEEK 77 (142)
Q Consensus 7 ~~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~~-~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-----~--~~~~ 77 (142)
..+++..++++++|. |+.++|.+.+..+ ...... ..++..|+.+|.+++|.|+.+++..++... . ....
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f--~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~ 145 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVF--SPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQL 145 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhh--cCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHH
Confidence 356788999988888 9999999999988 444444 489999999999999999999999988743 1 3445
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 108 (142)
...+...|..+|.+++|+|+.+||..++...
T Consensus 146 ~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 146 EDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 5567888999999999999999999998764
No 44
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.24 E-value=1.3e-10 Score=64.41 Aligned_cols=64 Identities=23% Similarity=0.369 Sum_probs=55.4
Q ss_pred HHHHHHHhch-hcCCCCC-ccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGL-YDFDNRG-FISPNDLKRMLAKL-----GESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+..+|+. .|.+++| +|+.+||+.++... +...++.++..+++.+|.|++|.|+|+||+.++
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~ 78 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLI 78 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 4567889998 6787876 99999999999986 345678899999999999999999999999875
No 45
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.23 E-value=7.4e-11 Score=62.07 Aligned_cols=59 Identities=27% Similarity=0.390 Sum_probs=54.0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 8 ERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
+++|..+|++++|.|+.+++..+++.. |. +..++..++..++.+++|.|++.+|+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~--g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS--GL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc--CC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 578999999999999999999999887 75 788899999999999999999999998775
No 46
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.22 E-value=1.3e-10 Score=64.28 Aligned_cols=65 Identities=20% Similarity=0.372 Sum_probs=57.5
Q ss_pred hHHHHHHHHhcC-CC-CCcccHHHHHHHHhh---hhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 5 REYERVFVYFDE-NG-DGKVSPSEIKNRMGM---IVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 5 ~~~~~~f~~~d~-~~-~g~i~~~e~~~~l~~---~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
..+-.+|+.++. ++ +|+|+.+||++++.. + |..++.+++..+++.+|.+++|.|+|.+|+..+..
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l--g~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTI--GSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 356788999998 66 899999999999973 5 88899999999999999999999999999988763
No 47
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.22 E-value=1.2e-10 Score=65.71 Aligned_cols=64 Identities=25% Similarity=0.317 Sum_probs=57.3
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
...++.+|..+|.+++|.|+.+++..+++.. | ++..++..++..+|.+++|.|++++|+.++..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~--~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS--G--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc--C--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 4678899999999999999999999999886 6 57888999999999999999999999988763
No 48
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.20 E-value=2e-10 Score=64.30 Aligned_cols=67 Identities=22% Similarity=0.344 Sum_probs=55.6
Q ss_pred hHHHHHHHHhc-CCCCC-cccHHHHHHHHhhhhC---CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 5 REYERVFVYFD-ENGDG-KVSPSEIKNRMGMIVG---GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 5 ~~~~~~f~~~d-~~~~g-~i~~~e~~~~l~~~~~---~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
..+.++|+.|| .+++| +|+..||+.++....+ +...+..++..+++.+|.+++|.|+|.||+.++..
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence 45677899999 78998 5999999999976311 23347789999999999999999999999998874
No 49
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.19 E-value=3.6e-10 Score=86.87 Aligned_cols=127 Identities=17% Similarity=0.402 Sum_probs=101.5
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCc-------HHHHHHHHHhhcCCCCCcccHHHHHHHHhcC--ChH
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVL-------LNEVEVAIESLDKDGDGFLDLEDLVGLIEGA--SAE 75 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~-------~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~--~~~ 75 (142)
.++.-+|..||.+.+|.++..+|+.||+.+ |..++ ++++..++...||+.+|.|+..+|+.++... .+.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl--gY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI 2330 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSL--GYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENI 2330 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhc--CCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccc
Confidence 456677999999999999999999999999 88763 4589999999999999999999999999865 344
Q ss_pred HHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhc----CC----CCCccccHHHHHhhh
Q 032375 76 EKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRF----DL----NGDGVLSFEEFRIMM 141 (142)
Q Consensus 76 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~----~~~g~i~~~ef~~~l 141 (142)
.....+..+|+.+|. +.-+|+.+++... ++.+++..++..+ ++ ...+.++|.+|++.|
T Consensus 2331 ~s~~eIE~AfraL~a-~~~yvtke~~~~~-------ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2331 LSSEEIEDAFRALDA-GKPYVTKEELYQN-------LTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cchHHHHHHHHHhhc-CCccccHHHHHhc-------CCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 455689999999998 8889999987654 3555555554443 33 234469999998765
No 50
>PF14658 EF-hand_9: EF-hand domain
Probab=99.19 E-value=1.1e-10 Score=60.09 Aligned_cols=60 Identities=27% Similarity=0.466 Sum_probs=56.2
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCCC-ccccHHHHHhhhC
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAKLGE-SKSIDECRMMIDRFDLNGD-GVLSFEEFRIMMQ 142 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~ 142 (142)
.+|.+||+++.|.|...++..+|+.++. .+.+.+++.+...+|+++. |.|++++|+..|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4699999999999999999999999987 8999999999999999987 9999999998874
No 51
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.18 E-value=1.4e-10 Score=58.45 Aligned_cols=51 Identities=24% Similarity=0.622 Sum_probs=47.7
Q ss_pred CCCcccHHHHHHHHhhhhCCCC-CcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 18 GDGKVSPSEIKNRMGMIVGGGD-VLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~-~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
++|.|+.++|+.++..+ |.. +++.++..++..+|.+++|.|++.||+..+.
T Consensus 1 ~~G~i~~~~~~~~l~~~--g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKL--GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHT--TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHh--CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47999999999999777 999 9999999999999999999999999999875
No 52
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.16 E-value=2.9e-10 Score=65.83 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 76 EKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 76 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.....+..+|..+|.+++|.|+.+|+..+. .......+..++..+|.|++|.||++||..++
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 345678889999999999999999999876 23456678899999999999999999999876
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.16 E-value=3.3e-10 Score=58.26 Aligned_cols=61 Identities=34% Similarity=0.690 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 032375 7 YERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLI 69 (142)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 69 (142)
+..+|..+|.+++|.|+.+++..+++.. +...+...+..++..++.+++|.|++.+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL--GEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh--CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999 999999999999999999999999999998765
No 54
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.16 E-value=8.5e-10 Score=75.13 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=98.3
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLRE 83 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~ 83 (142)
.+..+.+|..+|.+.+|.++.++|++.+..- +.++..+|..+|.+++|.|...|....+.........+++..
T Consensus 50 ~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~-------E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k 122 (463)
T KOG0036|consen 50 YEAAKMLFSAMDANRDGRVDYSEFKRYLDNK-------ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAK 122 (463)
T ss_pred hHHHHHHHHhcccCcCCcccHHHHHHHHHHh-------HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHH
Confidence 4556788999999999999999999998876 888999999999999999999999999987765666778888
Q ss_pred HhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH------hcCCCCCccccHHHHH
Q 032375 84 AFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMID------RFDLNGDGVLSFEEFR 138 (142)
Q Consensus 84 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~d~~~~g~i~~~ef~ 138 (142)
+|+..|+++++.|+.+|+++.+.-.. ...+..++. .+|.+.+..|+ ++|.
T Consensus 123 ~~e~~d~~g~~~I~~~e~rd~~ll~p----~s~i~di~~~W~h~~~idigE~~~iP-dg~s 178 (463)
T KOG0036|consen 123 FFEHMDKDGKATIDLEEWRDHLLLYP----ESDLEDIYDFWRHVLLIDIGEDAVLP-DGDS 178 (463)
T ss_pred HHHHhccCCCeeeccHHHHhhhhcCC----hhHHHHHHHhhhhheEEEccccccCC-cchH
Confidence 99999999999999999999986543 333444432 24555555555 4443
No 55
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.15 E-value=7e-10 Score=75.99 Aligned_cols=135 Identities=19% Similarity=0.343 Sum_probs=95.7
Q ss_pred cchhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhC----CC----------CCcHHHHH-HHHHhhcCCCCCcccHHHHH
Q 032375 2 VKGREYERVFVYFDENGDGKVSPSEIKNRMGMIVG----GG----------DVLLNEVE-VAIESLDKDGDGFLDLEDLV 66 (142)
Q Consensus 2 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~----~~----------~~~~~~~~-~l~~~~d~~~~g~v~~~ef~ 66 (142)
++++.+..+|..||.|++|.|+.+||..+...... |. ........ .+..-+.+++++++++++|+
T Consensus 230 ~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~ 309 (489)
T KOG2643|consen 230 IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFL 309 (489)
T ss_pred cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHH
Confidence 34567778899999999999999999887744421 11 11111112 23445678899999999999
Q ss_pred HHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhC-CCCCHH--HHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 67 GLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLG-ESKSID--ECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~--~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.++.. ...+-++--|..+|+..+|.|+..+|..++.... .+.... ....+-+.+... ...||++||.++.
T Consensus 310 ~F~e~----Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff 382 (489)
T KOG2643|consen 310 KFQEN----LQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFF 382 (489)
T ss_pred HHHHH----HHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHH
Confidence 99875 3344555669999999999999999999998863 333322 245566666643 4579999998765
No 56
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.14 E-value=4e-10 Score=62.55 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=57.7
Q ss_pred hhHHHHHHHHhcC--CCCCcccHHHHHHHHhhhhCCCC----CcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 4 GREYERVFVYFDE--NGDGKVSPSEIKNRMGMIVGGGD----VLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 4 ~~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
.+.++.+|..+|. +++|.|+..++..+++... |.. .+..++..++..++.+++|.|++.+|+..+..
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~-g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETEL-PNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHh-hhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 4568889999999 8999999999999998632 543 35889999999999999999999999998874
No 57
>PF14658 EF-hand_9: EF-hand domain
Probab=99.11 E-value=5.1e-10 Score=57.61 Aligned_cols=60 Identities=22% Similarity=0.445 Sum_probs=56.2
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHhhhhCCC-CCcHHHHHHHHHhhcCCCC-CcccHHHHHHHHh
Q 032375 9 RVFVYFDENGDGKVSPSEIKNRMGMIVGGG-DVLLNEVEVAIESLDKDGD-GFLDLEDLVGLIE 70 (142)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~l~~~~d~~~~-g~v~~~ef~~~~~ 70 (142)
.+|..||+++.|.|...++...|+.. +. .+.+.+++.+...+|+++. |.|+++.|+..+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~--~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV--TGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH--cCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 36999999999999999999999999 87 8999999999999999987 9999999998876
No 58
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.10 E-value=8.4e-10 Score=75.62 Aligned_cols=130 Identities=22% Similarity=0.282 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCc--HHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHH
Q 032375 7 YERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVL--LNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREA 84 (142)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~--~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~ 84 (142)
++--|..+|+..+|.|+..+|...+.... +.... ...++.+-.++... +..|++.||..++.-... ......|
T Consensus 320 l~lEF~~~~~~~~g~Ise~DFA~~lL~~a-~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~---l~dfd~A 394 (489)
T KOG2643|consen 320 LELEFERFDKGDSGAISEVDFAELLLAYA-GVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNN---LNDFDIA 394 (489)
T ss_pred HHHHHHHhCcccccccCHHHHHHHHHHHc-ccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhh---hhHHHHH
Confidence 34448888988889999999988887763 33332 22556666666554 456999999988774333 2333444
Q ss_pred hchhcCCCCCccCHHHHHHHHHH-hCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhhC
Q 032375 85 FGLYDFDNRGFISPNDLKRMLAK-LGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMMQ 142 (142)
Q Consensus 85 f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 142 (142)
...| ....+.|+..+|+++... .|..+++..++.+|..+|.|++|.|+.+||+..|+
T Consensus 395 l~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 395 LRFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMK 452 (489)
T ss_pred HHHH-HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHH
Confidence 4444 234589999999999987 48999999999999999999999999999998874
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.08 E-value=9.2e-10 Score=61.00 Aligned_cols=64 Identities=22% Similarity=0.433 Sum_probs=54.4
Q ss_pred HHHHHHHhchhcCC--CCCccCHHHHHHHHH-HhCCCCC----HHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDFD--NRGFISPNDLKRMLA-KLGESKS----IDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+...|+.|+.. .+|.|+.+||+.++. .+|..++ +.+++.++..+|.+++|.|+|++|+.++
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~ 77 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLV 77 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHH
Confidence 34567788888865 489999999999997 4565565 8999999999999999999999999876
No 60
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.94 E-value=1.9e-09 Score=69.02 Aligned_cols=138 Identities=16% Similarity=0.178 Sum_probs=95.3
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhC-CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHH---HH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVG-GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEE---KL 78 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~---~~ 78 (142)
+.+.++.+|...|.+.+|.|+..|+++-+..-.. .+.-...+....|+..|++++|.|+|+||...+....... ..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekeva 178 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVA 178 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHH
Confidence 4578999999999999999999999988765510 1122344556778889999999999999986554321111 00
Q ss_pred H--------------------HHHHHhchhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCCCCCccccHHHH
Q 032375 79 K--------------------DLREAFGLYDFDNRGFISPNDLKRMLAKL-GESKSIDECRMMIDRFDLNGDGVLSFEEF 137 (142)
Q Consensus 79 ~--------------------~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 137 (142)
. ...+.++.-.+..+-.+|..||..+|... +...-...+..+++.+|.|++..+|-.+|
T Consensus 179 dairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeF 258 (362)
T KOG4251|consen 179 DAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEF 258 (362)
T ss_pred HHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhh
Confidence 0 01111222223344566778888887653 33455666789999999999999999999
Q ss_pred Hhh
Q 032375 138 RIM 140 (142)
Q Consensus 138 ~~~ 140 (142)
++.
T Consensus 259 isl 261 (362)
T KOG4251|consen 259 ISL 261 (362)
T ss_pred hcC
Confidence 875
No 61
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.92 E-value=1.5e-08 Score=56.17 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=54.9
Q ss_pred hHHHHHHHH-hcCCCCC-cccHHHHHHHHhhhhC---CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 5 REYERVFVY-FDENGDG-KVSPSEIKNRMGMIVG---GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 5 ~~~~~~f~~-~d~~~~g-~i~~~e~~~~l~~~~~---~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
..|..+|+. +|.+++| .|+.+||+.++..... +....+.++..++..+|.+++|.|+|+||+..+..
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 567888999 6787876 9999999999987621 22345788999999999999999999999988764
No 62
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.89 E-value=1.8e-08 Score=58.39 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHH
Q 032375 42 LNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRML 105 (142)
Q Consensus 42 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l 105 (142)
...+.-.|..+|.+++|.|+.+|+..+.. ......+..+|..+|.+++|.||.+||..++
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l----~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIRL----DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHc----cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 55677778888888888888888887752 1224456677888888888888888888887
No 63
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.85 E-value=2.3e-08 Score=55.43 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=54.7
Q ss_pred hHHHHHHHHhcCC--CCCcccHHHHHHHHhhhhCCCCCc----HHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 5 REYERVFVYFDEN--GDGKVSPSEIKNRMGMIVGGGDVL----LNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 5 ~~~~~~f~~~d~~--~~g~i~~~e~~~~l~~~~~~~~~~----~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
..+...|+.++.. ++|.|+..||+.++.... |..++ +.++..++..+|.+++|.|+|++|+..+..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~-g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKEL-PNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHh-hHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4567788998865 478999999999997432 55555 899999999999999999999999988764
No 64
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.84 E-value=4.2e-08 Score=54.05 Aligned_cols=63 Identities=14% Similarity=0.382 Sum_probs=52.5
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHh-----CCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKL-----GESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+..+|+.|. ...+.++..||+.++..- +..-++..++.+++..|.|++|.|+|+||+.++
T Consensus 7 i~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 7 MEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 345677899987 556799999999999753 345578889999999999999999999999875
No 65
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.83 E-value=2.4e-08 Score=62.05 Aligned_cols=66 Identities=39% Similarity=0.611 Sum_probs=60.1
Q ss_pred HHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 76 EKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 76 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
........+|..||.+.+|+|+..|++.++..+|.+-+.--+..++...|-|.+|+||+-+|+-.+
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIf 161 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIF 161 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 345678889999999999999999999999999998888889999999999999999999998654
No 66
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.74 E-value=2e-08 Score=43.67 Aligned_cols=28 Identities=39% Similarity=0.627 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhh
Q 032375 6 EYERVFVYFDENGDGKVSPSEIKNRMGM 33 (142)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 33 (142)
+++.+|+.+|.|++|+|+.+||..+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4677888888888888888888877764
No 67
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.73 E-value=2e-08 Score=43.67 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=17.9
Q ss_pred HHHHhchhcCCCCCccCHHHHHHHHHH
Q 032375 81 LREAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 81 ~~~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
++.+|+.+|.|++|+|+.+||..++..
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456666677777777777776666654
No 68
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.71 E-value=5e-08 Score=57.22 Aligned_cols=65 Identities=28% Similarity=0.402 Sum_probs=56.3
Q ss_pred HHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC--CCccccHHHHHhhh
Q 032375 77 KLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLN--GDGVLSFEEFRIMM 141 (142)
Q Consensus 77 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~l 141 (142)
...+++.+|..||..++|+|+..+..++|+++|.++++.++...+..+..+ +-.+|+|++|+-.+
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~ 75 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMY 75 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHH
Confidence 346789999999999999999999999999999999999999999988876 34578888887654
No 69
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.71 E-value=4e-07 Score=63.93 Aligned_cols=105 Identities=17% Similarity=0.291 Sum_probs=78.5
Q ss_pred chhHHHHHHHHh---cCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHH
Q 032375 3 KGREYERVFVYF---DENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLK 79 (142)
Q Consensus 3 ~~~~~~~~f~~~---d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~ 79 (142)
+.++++.+|..+ +.++...++.++|.+....+.......++.+..+-...|...||-|+|+||..+=.-++.+ ..
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~p--Da 108 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAP--DA 108 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCc--hH
Confidence 456788887665 5677789999999877666642334555566666666677899999999998764432222 33
Q ss_pred HHHHHhchhcCCCCCccCHHHHHHHHHHhC
Q 032375 80 DLREAFGLYDFDNRGFISPNDLKRMLAKLG 109 (142)
Q Consensus 80 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 109 (142)
....+|+.||+.++|.++.+++.+++....
T Consensus 109 l~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 109 LFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred HHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 467789999999999999999999999863
No 70
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.64 E-value=2.8e-07 Score=55.04 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
+..+..+|..||.+++|.|+...++++|... |-.++++++..+++.+-++..|.++|..|...+.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~--gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTM--GDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHh--cccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 4556677777777777777777777777776 7777777777777777776667777777776665
No 71
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.58 E-value=8.9e-08 Score=42.38 Aligned_cols=29 Identities=48% Similarity=0.865 Sum_probs=24.4
Q ss_pred HHHHhchhcCCCCCccCHHHHHHHHH-HhC
Q 032375 81 LREAFGLYDFDNRGFISPNDLKRMLA-KLG 109 (142)
Q Consensus 81 ~~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 109 (142)
++.+|..+|.+++|.|+.+||+.++. .+|
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 67889999999999999999999998 554
No 72
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.57 E-value=1.1e-07 Score=42.08 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHh-hh
Q 032375 6 EYERVFVYFDENGDGKVSPSEIKNRMG-MI 34 (142)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~-~~ 34 (142)
+++.+|..+|.+++|.|+.+||..+++ .+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~l 30 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSL 30 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhc
Confidence 478899999999999999999999998 45
No 73
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.57 E-value=6.8e-07 Score=55.76 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=73.4
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC--ChHHHHHHHH
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA--SAEEKLKDLR 82 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~--~~~~~~~~~~ 82 (142)
..+..+|..+|.+.||+|+..|++.++.++ |-+-+---++.++...|.+.+|+|++.+|+-++... ..-.....+.
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL--gapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ds~~~ 176 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKL--GAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQEDSGLL 176 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHh--CCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccccccchHHH
Confidence 345667999999999999999999999999 888888888999999999999999999999877632 1111112222
Q ss_pred HHhc--hhcCCCCCccCHHHHHHHHH
Q 032375 83 EAFG--LYDFDNRGFISPNDLKRMLA 106 (142)
Q Consensus 83 ~~f~--~~d~~~~g~i~~~e~~~~l~ 106 (142)
.+-+ ..|....|+.....|-++=-
T Consensus 177 ~LAr~~eVDVskeGV~GAknFFeAKI 202 (244)
T KOG0041|consen 177 RLARLSEVDVSKEGVSGAKNFFEAKI 202 (244)
T ss_pred HHHHhcccchhhhhhhhHHHHHHHHH
Confidence 2222 36667777776666555533
No 74
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.55 E-value=2.3e-06 Score=62.85 Aligned_cols=131 Identities=20% Similarity=0.356 Sum_probs=109.8
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHH
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREA 84 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~ 84 (142)
.-+..+|+..|++.+|.++..+...+++.+ ...+....+..+++..+..+++++...++..+........ ++...
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~--n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQL--NVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHH--HHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 456778999999999999999999999999 8899999999999999888999999999999887654433 57778
Q ss_pred hchhcCCCCCccCHHHHHHHHHHhC--CCCCHHHHHHHHHhcCCC----CCccccHHHHHhhh
Q 032375 85 FGLYDFDNRGFISPNDLKRMLAKLG--ESKSIDECRMMIDRFDLN----GDGVLSFEEFRIMM 141 (142)
Q Consensus 85 f~~~d~~~~g~i~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l 141 (142)
|..+..+ .++++.+++..+|...+ .+.+...+..++..+... ..+.++++.|.++|
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL 272 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYL 272 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHh
Confidence 8887544 89999999999999874 467788888888877544 34569999999887
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.50 E-value=2.1e-06 Score=47.38 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=52.1
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhC---CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVG---GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
..+..+|..+..+ .+.++..||+.++..-++ ...-.+..+..++...|.++||.|+|.||+..+..
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3466778888743 569999999999966532 23345788999999999999999999999988874
No 76
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.49 E-value=7.7e-07 Score=61.76 Aligned_cols=67 Identities=21% Similarity=0.404 Sum_probs=39.8
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhC--CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVG--GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
...+..+|+..|.|++|.|+.+||+.+.+.+.. ....+..++..+.+.+|-+++|.|++.||+.++.
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 344556666666666666666666666555421 2234556666666666666666666666665554
No 77
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.48 E-value=5e-07 Score=44.02 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=37.3
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 95 FISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.++..|++.+|+.+++.+++..+..+|+.+|.+.+|++.-+||..++
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHH
Confidence 36788999999999999999999999999999999999999988765
No 78
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.44 E-value=2.4e-06 Score=59.52 Aligned_cols=51 Identities=35% Similarity=0.591 Sum_probs=45.1
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+..+|..+|.+++|.|+.+||.. +..+|..+|.|++|.|+++||...+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~ 383 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGL 383 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHH
Confidence 45678899999999999999999842 5789999999999999999999875
No 79
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.44 E-value=1.3e-06 Score=42.53 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=39.5
Q ss_pred cccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 21 KVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
+++..|++.+|+.+ .+.+++..+..+|+.+|++++|.+.-+||..++..
T Consensus 1 kmsf~Evk~lLk~~--NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM--NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHT--T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 36788999999999 99999999999999999999999999999988753
No 80
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.39 E-value=2.9e-06 Score=48.29 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=50.6
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
......+|...++ ++|.|+-++.+.+|...| ++.+.+..++...|.+++|.++.+||+-+|
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 4556778888875 679999999999988776 677889999999999999999999998765
No 81
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.35 E-value=8e-07 Score=37.18 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHH
Q 032375 7 YERVFVYFDENGDGKVSPSEIKNR 30 (142)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~ 30 (142)
|+.+|+.+|.|++|.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 466788888888888888888764
No 82
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.35 E-value=3.8e-06 Score=47.84 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=53.9
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
....+..+|...+. ++|.|+..+...++... .++...+..++...|.+++|.+++.||..++.
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S----~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKS----GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT----TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc----CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 45678889999885 57999999999988766 56779999999999999999999999998775
No 83
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.34 E-value=9.3e-07 Score=51.19 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhh
Q 032375 77 KLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIM 140 (142)
Q Consensus 77 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 140 (142)
....+.-.|..+|.+++|.|+..|+..+...+ ...+.=+..++..+|.|++|.||+.||..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 34556777999999999999999999876644 233444788999999999999999999763
No 84
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.34 E-value=4.1e-06 Score=59.01 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=47.7
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHh-cCCCCCccccHHHHHh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDR-FDLNGDGVLSFEEFRI 139 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~d~~~~g~i~~~ef~~ 139 (142)
.+...++|...|+.++|.|+.-+|+.++.....++....++..+.. .+.+...++|+..|..
T Consensus 178 ~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~a 240 (694)
T KOG0751|consen 178 LEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFNA 240 (694)
T ss_pred HHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHHH
Confidence 4456789999999999999999999999988777777777665544 4445566788877654
No 85
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.31 E-value=7.7e-06 Score=48.65 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=75.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-----ChHHHHHHHHH
Q 032375 9 RVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA-----SAEEKLKDLRE 83 (142)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-----~~~~~~~~~~~ 83 (142)
++...|..+|.|.++..+|..++..++ ...+.+-.+...|+.+|-++++.|--.++...+... .......-..+
T Consensus 75 ri~e~FSeDG~GnlsfddFlDmfSV~s-E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 75 RICEVFSEDGRGNLSFDDFLDMFSVFS-EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHhccCCCCcccHHHHHHHHHHHH-hhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 445667789999999999999998874 444445556677888899999999888888777643 22223334456
Q ss_pred HhchhcCCCCCccCHHHHHHHHHHhC
Q 032375 84 AFGLYDFDNRGFISPNDLKRMLAKLG 109 (142)
Q Consensus 84 ~f~~~d~~~~g~i~~~e~~~~l~~~~ 109 (142)
+..--|.+++|.++..||..++....
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~raP 179 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRAP 179 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhCc
Confidence 67777999999999999999987654
No 86
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.27 E-value=1.1e-06 Score=36.75 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=13.2
Q ss_pred HHHhchhcCCCCCccCHHHHHHH
Q 032375 82 REAFGLYDFDNRGFISPNDLKRM 104 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~ 104 (142)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34555666666666666665553
No 87
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.27 E-value=7.2e-06 Score=52.97 Aligned_cols=118 Identities=20% Similarity=0.242 Sum_probs=87.0
Q ss_pred cccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC---------ChHHHHHHHHHHhchhcCC
Q 032375 21 KVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA---------SAEEKLKDLREAFGLYDFD 91 (142)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~---------~~~~~~~~~~~~f~~~d~~ 91 (142)
.++.+||..+|.--- ....-...+..+.+.+|.+++..++-.+|+.....- .........+..=..+|.+
T Consensus 215 llteeEflsFLHPEh-SrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsN 293 (362)
T KOG4251|consen 215 LLTEEEFLSFLHPEH-SRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSN 293 (362)
T ss_pred hhhHHHHHHHcChHh-hhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcC
Confidence 455578877764431 233445667889999999999999999998764311 1111122334444578999
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHh
Q 032375 92 NRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRI 139 (142)
Q Consensus 92 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 139 (142)
.+|.+|.+|+..+...........++..++...+.|++..++.++.+.
T Consensus 294 hDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 294 HDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred CccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 999999999999987777777778889999999999999999998764
No 88
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.23 E-value=8.8e-06 Score=56.77 Aligned_cols=59 Identities=27% Similarity=0.570 Sum_probs=52.2
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh
Q 032375 37 GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 37 ~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 108 (142)
|.......+..+|..+|.+++|.|+..||+. ...+|..+|.+++|.|+.+||..+++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 6667788999999999999999999999952 4568999999999999999999998753
No 89
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.17 E-value=3.8e-06 Score=56.19 Aligned_cols=97 Identities=13% Similarity=0.177 Sum_probs=78.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHhcC-ChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh-CCCCCHHHHHHH
Q 032375 43 NEVEVAIESLDKDGDGFLDLEDLVGLIEGA-SAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL-GESKSIDECRMM 120 (142)
Q Consensus 43 ~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~ 120 (142)
..+..+|..||.+++|.++|.+....+.-. ........++.+|++|+...+|.+...+|.-+|... |. ..-.+-.+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv--~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV--EVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc--ceeecccc
Confidence 456778999999999999999998877644 444556778999999999999999999998888764 42 33345678
Q ss_pred HHhcCCCCCccccHHHHHhhh
Q 032375 121 IDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 121 ~~~~d~~~~g~i~~~ef~~~l 141 (142)
+...+...+|+|++.+|.++.
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred chhhhcccCcceeHHHHHHHH
Confidence 888888899999999998864
No 90
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.12 E-value=1e-05 Score=63.62 Aligned_cols=64 Identities=27% Similarity=0.433 Sum_probs=56.8
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCC--C-----HHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESK--S-----IDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~--~-----~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
..++..+|..||.+.+|.++..+|+.+|+.+|..+ - +.++..++...|++.+|.|++.+|+.+|
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHH
Confidence 44567789999999999999999999999998765 2 3379999999999999999999999987
No 91
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.11 E-value=3.8e-05 Score=53.76 Aligned_cols=134 Identities=19% Similarity=0.317 Sum_probs=96.1
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhh-----hhC-------CCCCcHHHHHHH---HHhhcCCCCCcccHHHHHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGM-----IVG-------GGDVLLNEVEVA---IESLDKDGDGFLDLEDLVGL 68 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~-----~~~-------~~~~~~~~~~~l---~~~~d~~~~g~v~~~ef~~~ 68 (142)
...+.++|-.+++.++|.|+..++.+..-. +.. +.-.+-+....+ |..+|.+++|.|+-++....
T Consensus 224 ~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry 303 (493)
T KOG2562|consen 224 ETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY 303 (493)
T ss_pred HHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH
Confidence 345677888889999999999887654311 100 111122222333 66678899999998888876
Q ss_pred HhcCChHHHHHHHHHHhc----hhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhh
Q 032375 69 IEGASAEEKLKDLREAFG----LYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIM 140 (142)
Q Consensus 69 ~~~~~~~~~~~~~~~~f~----~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 140 (142)
...... ..-+.++|. .+....+|.++.++|..++-++...-++.-+...|+.+|.+++|.|+..|...+
T Consensus 304 ~d~tlt---~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~f 376 (493)
T KOG2562|consen 304 GDHTLT---ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYF 376 (493)
T ss_pred hccchh---hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHH
Confidence 654322 334667777 344567889999999999999877778888999999999999999999886654
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.00014 Score=54.20 Aligned_cols=60 Identities=27% Similarity=0.445 Sum_probs=53.0
Q ss_pred HHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 80 DLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 80 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
...+.|..+|+..+|+++-..-+.+|...+ +....+..++...|.|+||+++-+||+-.|
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 347789999999999999999999998877 556678999999999999999999998654
No 93
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.99 E-value=7.9e-05 Score=53.82 Aligned_cols=133 Identities=21% Similarity=0.214 Sum_probs=89.2
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC-----CCCcccHHHHHHHHhcC------
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD-----GDGFLDLEDLVGLIEGA------ 72 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~-----~~g~v~~~ef~~~~~~~------ 72 (142)
.+.|.++|..+|.|.+|.++-.|+...-+..+ +.++...++..+....+.. .+..++...|+......
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF-~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~ 272 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCF-NTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRH 272 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhc-CCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhccc
Confidence 56789999999999999999999987766665 7788777776665555432 13345566665432200
Q ss_pred ------------------------------------ChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCC-C-H
Q 032375 73 ------------------------------------SAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESK-S-I 114 (142)
Q Consensus 73 ------------------------------------~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-~-~ 114 (142)
....-..-+..+|..||.+++|.++.+|+..++...+... . .
T Consensus 273 EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~ 352 (625)
T KOG1707|consen 273 ETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSS 352 (625)
T ss_pred cchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCC
Confidence 0111223467789999999999999999999999885432 1 0
Q ss_pred HHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 115 DECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 115 ~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.+. ..-..+..|.++|+.|++.+
T Consensus 353 ~~~----~~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 353 PYK----DSTVKNERGWLTLNGFLSQW 375 (625)
T ss_pred ccc----ccceecccceeehhhHHHHH
Confidence 000 01112367889999888754
No 94
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.85 E-value=9.9e-05 Score=52.61 Aligned_cols=65 Identities=26% Similarity=0.515 Sum_probs=55.1
Q ss_pred HHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 76 EKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGES---KSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 76 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.....+...|...| +++|+|+..++..++...+.. ...++++.++...+.|.+|+|++++|+..+
T Consensus 16 ~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 34456778899998 999999999999999987643 358889999999999999999999999853
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.82 E-value=4.8e-05 Score=41.60 Aligned_cols=60 Identities=22% Similarity=0.567 Sum_probs=48.3
Q ss_pred HHHHhchhcCCCCCccCHHHHHHHHHHh-CC-CCCHHHHHHHHHhcCCC----CCccccHHHHHhhh
Q 032375 81 LREAFGLYDFDNRGFISPNDLKRMLAKL-GE-SKSIDECRMMIDRFDLN----GDGVLSFEEFRIMM 141 (142)
Q Consensus 81 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l 141 (142)
+..+|..+.. +.+.||.++|..+|... +. ..+...+..++..+.++ ..+.+++++|..+|
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 5678888855 78999999999999876 33 46888899999888655 36889999999887
No 96
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.80 E-value=2.3e-05 Score=45.38 Aligned_cols=62 Identities=24% Similarity=0.205 Sum_probs=34.4
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHH
Q 032375 40 VLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKR 103 (142)
Q Consensus 40 ~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~ 103 (142)
.-...+.-.|..+|.+++|.|+..|+..+..... .....+...|...|.+++|.|+..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~--~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM--PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS--TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh--hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3455566667777777777777777766655321 1122455667777777777777777654
No 97
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.00025 Score=40.60 Aligned_cols=58 Identities=29% Similarity=0.512 Sum_probs=44.5
Q ss_pred HhchhcCCCCCccCHHHHHHHHHHh------CC---C-CCHHHH----HHHHHhcCCCCCccccHHHHHhhh
Q 032375 84 AFGLYDFDNRGFISPNDLKRMLAKL------GE---S-KSIDEC----RMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 84 ~f~~~d~~~~g~i~~~e~~~~l~~~------~~---~-~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.|.++|.++++.++--|+..++.-. |. + .++.++ +.+++.-|.|.+|.|+|.||++..
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 5889999999999999998887654 21 2 345555 445566688999999999999864
No 98
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.71 E-value=0.00011 Score=49.43 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=84.2
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHH
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREA 84 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~ 84 (142)
..+...|..||.+++|.++..+-...+.-++ |-..+...++..|..++...||.+.-.+|.-+++..... ..-.+.-.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc-~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv-~~l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLC-GPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV-EVLRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeee-CCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc-ceeecccc
Confidence 4567889999999999999999888888887 888899999999999999999999988887777632111 12235567
Q ss_pred hchhcCCCCCccCHHHHHHHHHHhC
Q 032375 85 FGLYDFDNRGFISPNDLKRMLAKLG 109 (142)
Q Consensus 85 f~~~d~~~~g~i~~~e~~~~l~~~~ 109 (142)
|...+...+|+|+.++|+.+....+
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCc
Confidence 8899999999999999999987654
No 99
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.52 E-value=0.00086 Score=41.35 Aligned_cols=133 Identities=19% Similarity=0.177 Sum_probs=84.0
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcC---CCCCcccHHHHHHHHh---c-------
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDK---DGDGFLDLEDLVGLIE---G------- 71 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~---~~~g~v~~~ef~~~~~---~------- 71 (142)
..|++-..-+|.|+||.|.+-|....++.+ |+.+.-..+..++-...- ...+-+.-.-|...+. .
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraL--Gf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDS 84 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRAL--GFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDS 84 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHh--CCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCc
Confidence 345666667899999999999999999999 988766555444433321 1222222111211111 0
Q ss_pred ----CChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh-------CCCCCHHHHHHHHHhcCCCCCccccHHHHHhh
Q 032375 72 ----ASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL-------GESKSIDECRMMIDRFDLNGDGVLSFEEFRIM 140 (142)
Q Consensus 72 ----~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 140 (142)
....-.....+.+|..++..+.+.+|..|+.++++.- |...+.-|-..++..+ .+++|.++.++...+
T Consensus 85 g~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 85 GAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 0112234578899999999999999999999999873 2222333334444444 367889988876543
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.51 E-value=0.00015 Score=30.41 Aligned_cols=27 Identities=33% Similarity=0.639 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhh
Q 032375 7 YERVFVYFDENGDGKVSPSEIKNRMGM 33 (142)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~l~~ 33 (142)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 556777777777777777777776653
No 101
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.50 E-value=0.00066 Score=37.02 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC----CCCcccHHHHHHHHhcC
Q 032375 6 EYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD----GDGFLDLEDLVGLIEGA 72 (142)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~----~~g~v~~~ef~~~~~~~ 72 (142)
++..+|..+.. +.+.|+.++|.+.|+..=+....+...+..++.++.++ ..+.+++.+|..++...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 46788999955 78899999999999766212235788999999998654 46789999999988754
No 102
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.44 E-value=0.00072 Score=48.44 Aligned_cols=64 Identities=22% Similarity=0.386 Sum_probs=55.4
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCC---cHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDV---LLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~---~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
..+++.|...| +++|+++..++..++.+. +... ..++++.++...+++.+|+|++++|+..+..
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~--~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKA--KLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHh--cccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 46777899999 899999999999999988 5443 5789999999999999999999999997653
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.40 E-value=0.00022 Score=29.91 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=13.5
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHH
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLA 106 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~ 106 (142)
..+|..+|.+++|.|+..+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 3455555555555555555555543
No 104
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.16 E-value=0.0063 Score=46.60 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=75.9
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcH-----HHHHHHHHhhcCCCCCcccHHHHHHHHhcC-ChHHH
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLL-----NEVEVAIESLDKDGDGFLDLEDLVGLIEGA-SAEEK 77 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-----~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-~~~~~ 77 (142)
..++++.|+.++....|.++.+++..+|..+ |...-. .+...+....|+..-|.|++.+|...+... .....
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl--g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~ 823 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSL--GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDT 823 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhc--CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcH
Confidence 3578889999999999999999999999998 887653 244455555566667899999999998854 55556
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHH
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKR 103 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~ 103 (142)
...+..+|..+-.+.. ++..+|+..
T Consensus 824 ~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 824 ELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 6677788888865555 788888877
No 105
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=96.63 E-value=0.03 Score=42.21 Aligned_cols=97 Identities=12% Similarity=0.253 Sum_probs=75.8
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 032375 41 LLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMM 120 (142)
Q Consensus 41 ~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 120 (142)
...++..++...|.+.+|.+++.+-..++...........+...|+..+..+++.+...++..+....+..+ ++..+
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 467889999999999999999999888887655555556677778877889999999999999988876544 66677
Q ss_pred HHhcCCCCCccccHHHHHhhh
Q 032375 121 IDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 121 ~~~~d~~~~g~i~~~ef~~~l 141 (142)
+..+..+ .+.++.++++.++
T Consensus 211 f~~~s~~-~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 211 FVQYSHG-KEYLSTDDLLRFL 230 (746)
T ss_pred HHHHhCC-CCccCHHHHHHHH
Confidence 7666644 6677777776654
No 106
>PLN02952 phosphoinositide phospholipase C
Probab=96.60 E-value=0.021 Score=42.39 Aligned_cols=84 Identities=13% Similarity=0.274 Sum_probs=54.2
Q ss_pred CCcccHHHHHHHHhcCC--hHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCC--CCCHHHHHHHHHhc----C---
Q 032375 57 DGFLDLEDLVGLIEGAS--AEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGE--SKSIDECRMMIDRF----D--- 125 (142)
Q Consensus 57 ~g~v~~~ef~~~~~~~~--~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~----d--- 125 (142)
.|.++|++|..+..... ......++..+|..+.. +.+.++.++|..+|..... ..+.+.+..++..+ .
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 47888998887766432 12245678888888854 4468999999999888632 34555555554432 1
Q ss_pred CCCCccccHHHHHhhh
Q 032375 126 LNGDGVLSFEEFRIMM 141 (142)
Q Consensus 126 ~~~~g~i~~~ef~~~l 141 (142)
....+.++++.|..+|
T Consensus 93 ~~~~~~l~~~~F~~~l 108 (599)
T PLN02952 93 RYTRHGLNLDDFFHFL 108 (599)
T ss_pred cccccCcCHHHHHHHH
Confidence 1122358888888876
No 107
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.011 Score=42.48 Aligned_cols=62 Identities=26% Similarity=0.349 Sum_probs=53.0
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.+....-|+.+-+|..|.|+-.--++++.... +.-.|+.++|...|.+.+|.+++.||+.++
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAf 291 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAF 291 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhH
Confidence 34455668888999999999988888887654 567799999999999999999999999876
No 108
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.53 E-value=0.024 Score=34.78 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=47.8
Q ss_pred HHHHHHHh---cCCCCCcccHHHHHHHHhhhhCCC---CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 7 YERVFVYF---DENGDGKVSPSEIKNRMGMIVGGG---DVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 7 ~~~~f~~~---d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
|+++|..| -..+...|+...|.++++.. ++ .++..++..+|.++-..+...|+|++|+.+|..
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~--~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDC--GIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHT--SS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHc--CCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 35566665 34556789999999999887 54 478999999999986666678999999998873
No 109
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=96.47 E-value=0.0009 Score=35.09 Aligned_cols=56 Identities=21% Similarity=0.411 Sum_probs=39.9
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-------CCccccHHHHHhhh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLN-------GDGVLSFEEFRIMM 141 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~l 141 (142)
.+++..+|+.+ .+++++||.++|++.|.. +.++.++..+..- ..|.++|..|+..|
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 46788999999 788999999999998633 2335555554322 23679999998754
No 110
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.41 E-value=0.01 Score=40.70 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=77.9
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCC---CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHH
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVGGG---DVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDL 81 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~ 81 (142)
..|+.+|..+-.+.++......+...-..+ .. +.=..++-=+|+..|.+.++.++..|+..+-.. ..+.-+
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~--d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~Ci 284 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGF--DTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACI 284 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhccccccc--ccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc----CchhHH
Confidence 467788888877777666655555443332 22 223567788999999999999999998776553 234567
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMM 120 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 120 (142)
+..|...|...+|.|+..|+-..+...+ ++...+...+
T Consensus 285 kpFfnsCD~~kDg~iS~~EWC~CF~k~~-~pc~~e~~ri 322 (434)
T KOG3555|consen 285 KPFFNSCDTYKDGSISTNEWCYCFQKSD-PPCQAELCRI 322 (434)
T ss_pred HHHHhhhcccccCccccchhhhhhccCC-CccccHHHHH
Confidence 8889999999999999999999887766 4444444444
No 111
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.41 E-value=0.11 Score=40.34 Aligned_cols=119 Identities=17% Similarity=0.253 Sum_probs=78.6
Q ss_pred cCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcC--CC-----CCcccHHHHHHHHhcCChHHHHHHHHHHhch
Q 032375 15 DENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDK--DG-----DGFLDLEDLVGLIEGASAEEKLKDLREAFGL 87 (142)
Q Consensus 15 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~--~~-----~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~ 87 (142)
..+..|.|....+.+.+..- -.+..+...+..+.. +. ....+++.|..++...+.+. ++..+|..
T Consensus 158 qvn~~grip~knI~k~F~~~-----k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~---eie~iF~k 229 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD-----KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRP---EIEEIFRK 229 (1189)
T ss_pred cccccccccHHHHHHHhhcC-----CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCch---hHHHHHHH
Confidence 34566777766665554322 111223322222211 11 12355666777776555444 48888999
Q ss_pred hcCCCCCccCHHHHHHHHHHhC----------CCCCHHHHHHHHHhcCCCC----CccccHHHHHhhh
Q 032375 88 YDFDNRGFISPNDLKRMLAKLG----------ESKSIDECRMMIDRFDLNG----DGVLSFEEFRIMM 141 (142)
Q Consensus 88 ~d~~~~g~i~~~e~~~~l~~~~----------~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l 141 (142)
+..+..-++|.++|..+|..-. ...++..+..++..+.+|. .|.++-+.|+.++
T Consensus 230 i~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 230 ISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred hccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 9888889999999999998752 2466888999999998874 7889999999886
No 112
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=96.39 E-value=0.0069 Score=44.64 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=59.0
Q ss_pred ccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHH
Q 032375 22 VSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDL 101 (142)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~ 101 (142)
|+.++|...++... -+..+...+..+|+..|.+++|.+++.+++..+.......-.+.+.-+|+.+|++++ ....++.
T Consensus 535 i~~~~f~~~f~~l~-pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELL-PWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccC-chhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44455555555443 333455677889999999999999999999988877666677788888999999988 8887776
No 113
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.027 Score=32.47 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHhhhhC----CCC----CcHHHHHHHHHh----hcCCCCCcccHHHHHHH
Q 032375 9 RVFVYFDENGDGKVSPSEIKNRMGMIVG----GGD----VLLNEVEVAIES----LDKDGDGFLDLEDLVGL 68 (142)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~----~~~----~~~~~~~~l~~~----~d~~~~g~v~~~ef~~~ 68 (142)
..|...|-++++.++--|+.+++...-. |.. +++.++..++.. -|.+++|.|+|-||+..
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 3467777888888888888877765511 221 234444444333 35566777777777653
No 114
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.0071 Score=45.61 Aligned_cols=64 Identities=20% Similarity=0.356 Sum_probs=55.8
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
+..++.++|+.+|+..+|+++-.+=+.+|... .++...+..|+...|.++||+++-+||.-.+-
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS----~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQS----GLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhc----CCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 45678899999999999999999998888755 56778899999999999999999999987654
No 115
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.19 E-value=0.0056 Score=41.61 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=43.2
Q ss_pred HHHHhchhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 81 LREAFGLYDFDNRGFISPNDLKRMLAKLG-ESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 81 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
+.-.|..+|.+.++.|...|++.+=+.+- ..-...=.+.+++.+|.|++.+||+.|+...|
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 44458888999999998888765544331 11222334778888899999999999988765
No 116
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=95.95 E-value=0.083 Score=29.29 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHHHHhchhcCCCCCccCHHHHHHHHHHh-------C----CCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 79 KDLREAFGLYDFDNRGFISPNDLKRMLAKL-------G----ESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 79 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
++.+.+|..+ .|.+|.++...|..+|... | .+..+..++.+|.... ....|+.++|+..|
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl 73 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWL 73 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHH
Confidence 5677888888 6888999999999888875 2 1235777888888873 44579999999876
No 117
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.92 E-value=0.064 Score=43.69 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=48.7
Q ss_pred HhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 84 AFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 84 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.|+-+|+++.|.|+..+|..++..- .+.+..+++-++.-...+.+...+|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4788899999999999999998653 35678889999999888888999999998643
No 118
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.79 E-value=0.091 Score=32.27 Aligned_cols=53 Identities=11% Similarity=0.300 Sum_probs=32.3
Q ss_pred cCCCCCccCHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 89 DFDNRGFISPNDLKRMLAKLG---ESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 89 d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
-..+...++-..|..+++..+ ..++...++-+|..+-.....+|+|++|..+|
T Consensus 12 G~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 12 GKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp STSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHH
T ss_pred cCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHH
Confidence 345556677777777777653 24666667777777655555567777777665
No 119
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.78 E-value=0.07 Score=33.18 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhcC
Q 032375 44 EVEVAIESLDKDGDGFLDLEDLVGLIEGA 72 (142)
Q Consensus 44 ~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 72 (142)
.++.-+.-+|+++||.|...|-..-+...
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraL 36 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRAL 36 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHh
Confidence 45566667788888888766655555543
No 120
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.06 Score=38.91 Aligned_cols=63 Identities=24% Similarity=0.260 Sum_probs=50.7
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
++-+...|+....|-+|.|+-.--++++.+. .++..++..|+...|.+.||-+++.||..++.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKS----klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKS----KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhc----cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 3445667888888888888887777766654 67788999999999999999999999998765
No 121
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.17 E-value=0.017 Score=39.33 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCCCCcccHHHH---HHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh
Q 032375 45 VEVAIESLDKDGDGFLDLEDL---VGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 45 ~~~l~~~~d~~~~g~v~~~ef---~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 108 (142)
+.--|..+|.++++.|.-.|+ ..++.... ....-.+.+|+..|.+++.+|+.+|++..|...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 344466778888888876664 44444322 223456778888899999999999999888765
No 122
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.14 E-value=0.058 Score=39.64 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=55.7
Q ss_pred HHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 80 DLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 80 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
..+.-|..+|.++.|+++.++...+|+..+...+...++.++...+.+..|.+.+.||.+.+
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~ 655 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLM 655 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHH
Confidence 34456899999999999999999999999888999999999999998889999999998765
No 123
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.86 E-value=0.069 Score=36.81 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=49.2
Q ss_pred HHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 79 KDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 79 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
..+.-+|..+|.+.+|.++..|++.+-.. -.+.=++.+|..+|.-.+|.|+-.||...+
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ld----knE~CikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELD----KNEACIKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhcc----CchhHHHHHHhhhcccccCccccchhhhhh
Confidence 45777899999999999999999876432 344557899999999999999999998765
No 124
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.57 E-value=0.12 Score=38.47 Aligned_cols=75 Identities=20% Similarity=0.250 Sum_probs=54.4
Q ss_pred ccHHHHHHHHhcCChH-HHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHH
Q 032375 60 LDLEDLVGLIEGASAE-EKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFE 135 (142)
Q Consensus 60 v~~~ef~~~~~~~~~~-~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 135 (142)
+.+..|...+...... .....+..+|..+|.+++|.|+..++...|..+...-..+.+..+++.++++.+ ..+.+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 3444455444443222 344567889999999999999999999999988666666778888999988776 54443
No 125
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.29 E-value=0.13 Score=35.06 Aligned_cols=59 Identities=25% Similarity=0.466 Sum_probs=44.3
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHh----CCCCC--------HHH----HHHHHHhcCCCCCccccHHHHHhh
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKL----GESKS--------IDE----CRMMIDRFDLNGDGVLSFEEFRIM 140 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~--------~~~----~~~~~~~~d~~~~g~i~~~ef~~~ 140 (142)
+..|..+|.+++|.++..|+..++..- -.+.+ .++ -..+++..|.|.+..|+++||++.
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 456889999999999999999887642 11111 111 256788999999999999999864
No 126
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=0.097 Score=40.82 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=51.9
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhh
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIM 140 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 140 (142)
.....++|...|.+.+|.|+-.+.+..+.. .++....+...+...+....|.+++.+|.-.
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~ 342 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALA 342 (847)
T ss_pred HHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchh
Confidence 344566899999999999999999999877 4577888999999999999999999987644
No 127
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.33 E-value=0.24 Score=36.60 Aligned_cols=64 Identities=11% Similarity=0.262 Sum_probs=55.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 6 EYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
..+..|..+|.++.|+++..++.+.++.. +...++..++.+.+..+.+-+|.+...+|...+..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~--~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSE--NVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 34466888999999999999999999998 77889999999999999888899999998887764
No 128
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=93.09 E-value=0.9 Score=25.62 Aligned_cols=83 Identities=14% Similarity=0.119 Sum_probs=54.1
Q ss_pred CCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCC-hHHHHHHHHHHhchhcCCCCCcc
Q 032375 18 GDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGAS-AEEKLKDLREAFGLYDFDNRGFI 96 (142)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~i 96 (142)
-||.++..|...+-..+-..+.++..+...+...+........++.+|...+.... ...+..-+..++.+- --||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCC
Confidence 37888988887665544212467788888888888766556688899988877543 344444455555554 234777
Q ss_pred CHHHHH
Q 032375 97 SPNDLK 102 (142)
Q Consensus 97 ~~~e~~ 102 (142)
+..|-.
T Consensus 90 ~~~E~~ 95 (104)
T cd07313 90 DEYEEH 95 (104)
T ss_pred CHHHHH
Confidence 776643
No 129
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=92.74 E-value=0.98 Score=25.11 Aligned_cols=65 Identities=6% Similarity=0.138 Sum_probs=40.4
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhC---------CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVG---------GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA 72 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---------~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 72 (142)
++++.+|+.+ .|++|.++...|...|+.+.. .++..+..++..|... .....|+.++|+..+...
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 5788899998 677899999999988876621 1122455666666655 234568899999888753
No 130
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.63 E-value=0.47 Score=37.04 Aligned_cols=66 Identities=24% Similarity=0.229 Sum_probs=53.0
Q ss_pred HHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCH-----HHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 76 EKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSI-----DECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 76 ~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
....+++..|..++....|.++.+++..+|..+|..... .+...++...+++..|+|++.+|...|
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 344578888999999999999999999999999987764 234556666677777899999998765
No 131
>PLN02952 phosphoinositide phospholipase C
Probab=92.30 E-value=1.6 Score=33.00 Aligned_cols=89 Identities=10% Similarity=0.024 Sum_probs=57.5
Q ss_pred CCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCCh--HHHHHHHHHHhchh-------
Q 032375 18 GDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASA--EEKLKDLREAFGLY------- 88 (142)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~--~~~~~~~~~~f~~~------- 88 (142)
+.|.++.++|..+.+.+......+..++..+|..+..++ +.++.++|..++...-. ....+....++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 468999999988777762122337889999999996543 67999999999874311 11122233332221
Q ss_pred cCCCCCccCHHHHHHHHHH
Q 032375 89 DFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 89 d~~~~g~i~~~e~~~~l~~ 107 (142)
...+.+.++.+.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 1123456899999988863
No 132
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.20 E-value=0.34 Score=37.96 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=95.7
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-----------
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA----------- 72 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~----------- 72 (142)
+..+...|+..|..++|.|+..+-..++... .+....+-.++...|..+.|.++..+|...+...
T Consensus 10 q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s----~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~ 85 (847)
T KOG0998|consen 10 QPLFDQYFKSADPQGDGRITGAEAVAFLSKS----GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSA 85 (847)
T ss_pred cchHHHhhhccCcccCCcccHHHhhhhhhcc----ccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCc
Confidence 4567788999999999999999988877654 5667777778888888888888888887655410
Q ss_pred -------------------------------------ChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHH
Q 032375 73 -------------------------------------SAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSID 115 (142)
Q Consensus 73 -------------------------------------~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~ 115 (142)
............|+...+. +|.++-+..+-+|..-+ +...
T Consensus 86 ~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s~--Lp~~ 162 (847)
T KOG0998|consen 86 KKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNSK--LPSD 162 (847)
T ss_pred cccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcCC--CChh
Confidence 0011122334456666544 78888887777776544 5556
Q ss_pred HHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 116 ECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 116 ~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
.+..++...|.+.+|.++..+|.-.|
T Consensus 163 ~l~~iw~l~d~d~~g~Ld~~ef~~am 188 (847)
T KOG0998|consen 163 VLGRIWELSDIDKDGNLDRDEFAVAM 188 (847)
T ss_pred hhccccccccccccCCCChhhhhhhh
Confidence 67788999999999999999997654
No 133
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=91.53 E-value=2.1 Score=29.85 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=60.7
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh-C----------CCCCH
Q 032375 46 EVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL-G----------ESKSI 114 (142)
Q Consensus 46 ~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-~----------~~~~~ 114 (142)
..++..+|..+.|+++-......+.........+.++.+|... .+.+|.+..-.+.+++... . .+.++
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evlslpT~v~e~psfg~te 191 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTE 191 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHH
Confidence 3455667888888887666666666556666678899999988 4778988888888888774 1 12233
Q ss_pred HHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 115 DECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 115 ~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
..++..|. ...+++++.|+..|
T Consensus 192 ~~a~~cf~-----qqrKv~Ln~fldtl 213 (434)
T KOG4301|consen 192 LSARLCFL-----QQRKVELNQFLDTL 213 (434)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHH
Confidence 33444442 34467888887765
No 134
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=91.35 E-value=1.3 Score=24.22 Aligned_cols=69 Identities=6% Similarity=-0.020 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhC
Q 032375 40 VLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLG 109 (142)
Q Consensus 40 ~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 109 (142)
++..++....+..-.+. ..|.+.+|...+..........+...+=..+|...+++|+.=||--+.+-++
T Consensus 4 ITK~eA~~FW~~~Fg~r-~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 4 ITKAEAAEFWKTSFGKR-TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp -SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred eccHHHHHHHHHHCCCC-eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 44555666666554333 4588888887777543322222333333456777778888777776665543
No 135
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=91.05 E-value=0.59 Score=38.69 Aligned_cols=58 Identities=21% Similarity=0.398 Sum_probs=48.4
Q ss_pred HHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 10 VFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 10 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
-|..+|+++.|.|+..+|.+++..- -..+..++..++.....+.+..++|.+|+.-+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~---k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGH---KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcc---ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 3677899999999999999987643 346788999999999888888999999987544
No 136
>PLN02222 phosphoinositide phospholipase C 2
Probab=90.31 E-value=1.7 Score=32.69 Aligned_cols=64 Identities=11% Similarity=0.167 Sum_probs=28.9
Q ss_pred cHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCCh--HHHHHHHHHHhchhcC-CCCCccCHHHHHHHHH
Q 032375 41 LLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASA--EEKLKDLREAFGLYDF-DNRGFISPNDLKRMLA 106 (142)
Q Consensus 41 ~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~--~~~~~~~~~~f~~~d~-~~~g~i~~~e~~~~l~ 106 (142)
...++..+|..+.. ++.++.++|..++...-. ....+....++..+.. ...+.++.+.|..+|.
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 34466666666532 245666666555553211 1122233334443321 1234455555555553
No 137
>PLN02228 Phosphoinositide phospholipase C
Probab=90.22 E-value=2.2 Score=32.03 Aligned_cols=65 Identities=14% Similarity=0.302 Sum_probs=32.5
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCC--hHHHHHHHHHHhchhcCC----CCCccCHHHHHHHH
Q 032375 39 DVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGAS--AEEKLKDLREAFGLYDFD----NRGFISPNDLKRML 105 (142)
Q Consensus 39 ~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~--~~~~~~~~~~~f~~~d~~----~~g~i~~~e~~~~l 105 (142)
..+..++..+|..+..+ +.++.++|..++...- .....+.+..++..+... ..|.++.+.|..+|
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 34566666677666432 3567676666665321 112223344555554322 22445555555554
No 138
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=89.51 E-value=1.4 Score=24.88 Aligned_cols=62 Identities=24% Similarity=0.264 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcC---CCCCccCHHHHHHHHHHh
Q 032375 42 LNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDF---DNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 42 ~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~---~~~g~i~~~e~~~~l~~~ 108 (142)
-..++.-|..+.. +|.++...|-.++..... .+-..++|..+.. -....|+.+|++.++.++
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dS---keFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGECIGMKDS---KEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S----HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHHhcCCccc---HHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 3445555555544 567777777777765422 2233344443321 124678888888777765
No 139
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.21 E-value=1.2 Score=30.65 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=40.4
Q ss_pred HHHHhcCCCCCcccHHHHHHHHhhhhC---CCCCcHHH-----------HHHHHHhhcCCCCCcccHHHHHHHHhcC
Q 032375 10 VFVYFDENGDGKVSPSEIKNRMGMIVG---GGDVLLNE-----------VEVAIESLDKDGDGFLDLEDLVGLIEGA 72 (142)
Q Consensus 10 ~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~-----------~~~l~~~~d~~~~g~v~~~ef~~~~~~~ 72 (142)
+|...|.+++|.++..++..++..-.. .-.-.+.+ -..++..+|.+.+..|+.+||+..-...
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 455567789999999888776644311 11111111 1345667788888899999998776644
No 140
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=89.04 E-value=2.3 Score=25.28 Aligned_cols=81 Identities=31% Similarity=0.365 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-ChHHHHHHHHHHhchhcCCCCCcc
Q 032375 18 GDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA-SAEEKLKDLREAFGLYDFDNRGFI 96 (142)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~i 96 (142)
-||.++.+|...+...+.....++......+...++......+++.++...+... ....+..-+..++...-.| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 4788999988766655422445566667777776655444467788888877753 4444555566667766555 455
Q ss_pred CHHH
Q 032375 97 SPND 100 (142)
Q Consensus 97 ~~~e 100 (142)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 5444
No 141
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=88.77 E-value=0.74 Score=24.20 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=36.4
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC-------CCCcccHHHHHH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD-------GDGFLDLEDLVG 67 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~-------~~g~v~~~ef~~ 67 (142)
+.+++.+.|+.+ .++.++||.+++++.|..- .+..+...+.+. ..|..+|..|+.
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe---------~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLTPE---------QAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS-CC---------CHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcCcH---------HHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 567899999999 6777999999999875322 224444444332 125677877764
No 142
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=88.57 E-value=3.2 Score=23.86 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=39.2
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
..+|.+.+..++...+..+++.+|...|.....+-++.++....
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 45677888888889999999999999999999999999998886
No 143
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=88.47 E-value=1.5 Score=26.48 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhcCC-------CCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC
Q 032375 4 GREYERVFVYFDEN-------GDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD 55 (142)
Q Consensus 4 ~~~~~~~f~~~d~~-------~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~ 55 (142)
.++++.+...|..+ ..+.|+.+-|+.+++..+ ...++++-++++|..|...
T Consensus 24 ~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yL-e~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 24 TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYL-EVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp ---HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHT-T-S--HHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHH-cCCCCHHHHHHHHHHHhCc
Confidence 34566666666332 335788888888888887 7778888888888888554
No 144
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=88.34 E-value=2.8 Score=22.99 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=46.4
Q ss_pred CcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh---cCChHHHHHHHHHHhchh
Q 032375 20 GKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE---GASAEEKLKDLREAFGLY 88 (142)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~---~~~~~~~~~~~~~~f~~~ 88 (142)
..||..||.+..+.. +.+++...+..++...-...-...+-++=..++. ....+.....+..+|..|
T Consensus 13 n~iT~~eLlkyskqy--~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQY--NISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHh--CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 468999999999999 9999999999999988555444455554444443 334445555566666544
No 145
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=87.72 E-value=2.7 Score=22.03 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 97 SPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 97 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
+.+++..++...|..++..++.++++.-+
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKED 43 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCC
Confidence 34567788877788888888888887754
No 146
>PLN02230 phosphoinositide phospholipase C 4
Probab=87.58 E-value=4 Score=30.96 Aligned_cols=62 Identities=23% Similarity=0.465 Sum_probs=32.8
Q ss_pred HHHHHHhchhcCCCCCccCHHHHHHHHHHhC-C--CCCHHHHHHHHHhcCC-------CCCccccHHHHHhhh
Q 032375 79 KDLREAFGLYDFDNRGFISPNDLKRMLAKLG-E--SKSIDECRMMIDRFDL-------NGDGVLSFEEFRIMM 141 (142)
Q Consensus 79 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~--~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~l 141 (142)
.++..+|..+..++ +.++.++|..+|.... . ..+.+.+..++..+-. -..+.++++.|..+|
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 45666666664333 6677777777776653 1 2234444444433211 122347777777665
No 147
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.68 E-value=1.6 Score=30.75 Aligned_cols=57 Identities=25% Similarity=0.402 Sum_probs=41.1
Q ss_pred HHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHh-cCCCCCccccH
Q 032375 78 LKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDR-FDLNGDGVLSF 134 (142)
Q Consensus 78 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~-~d~~~~g~i~~ 134 (142)
.++++++|+.+|+.++|+|+-.-++.++...+...++.+.-.+++. .++..-|.|-.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~ 365 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILL 365 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEe
Confidence 5678999999999999999999999999988866665554444433 34333333333
No 148
>PLN02228 Phosphoinositide phospholipase C
Probab=85.57 E-value=7.6 Score=29.34 Aligned_cols=64 Identities=19% Similarity=0.308 Sum_probs=49.7
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCC--CcHHHHHHHHHhhcCC----CCCcccHHHHHHHHhc
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGD--VLLNEVEVAIESLDKD----GDGFLDLEDLVGLIEG 71 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~--~~~~~~~~l~~~~d~~----~~g~v~~~ef~~~~~~ 71 (142)
..++..+|..+-. ++.|+.++|.++|... ... .+...+..++..+.+. ..+.++...|..++..
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~--Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEV--QGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHh--cCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 5688999999854 3589999999999887 432 4567788899988654 2367999999998864
No 149
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.43 E-value=4.9 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=11.9
Q ss_pred CCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhh
Q 032375 19 DGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESL 52 (142)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~ 52 (142)
+|.++.+.|..++ |..-+.+...+||..+
T Consensus 42 dG~L~rs~Fg~CI-----GM~dSkeFA~eLFdAL 70 (100)
T PF08414_consen 42 DGLLPRSDFGECI-----GMKDSKEFAGELFDAL 70 (100)
T ss_dssp TTBEEGGGHHHHH-----T--S-HHHHHHHHHHH
T ss_pred CCcccHHHHHHhc-----CCcccHHHHHHHHHHH
Confidence 4455555555443 3333344444444433
No 150
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.20 E-value=6 Score=23.54 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=19.8
Q ss_pred HHHHHhchhcCCCCCccCHHHHHHHHHHh
Q 032375 80 DLREAFGLYDFDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 80 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 108 (142)
.+..+...||+++.|.|+.-.++..|..+
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 35556788999999999999888877543
No 151
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=84.64 E-value=5.9 Score=23.04 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=37.4
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
..+|.+....++..+|.+++..+|...|......-+..+++.+.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34566666778888999999999999999999999999988885
No 152
>PLN02222 phosphoinositide phospholipase C 2
Probab=84.45 E-value=7.6 Score=29.43 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=49.7
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCC--CcHHHHHHHHHhhcC-CCCCcccHHHHHHHHhc
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGD--VLLNEVEVAIESLDK-DGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~--~~~~~~~~l~~~~d~-~~~g~v~~~ef~~~~~~ 71 (142)
..++..+|..+.. .+.|+.++|..+|... ... .+.+.+..++..+.. ...+.++++.|..++..
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~--Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDV--QKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHh--cCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3588999999854 4799999999999887 543 467788888887643 23567999999998874
No 153
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=84.42 E-value=10 Score=30.35 Aligned_cols=80 Identities=14% Similarity=0.268 Sum_probs=56.3
Q ss_pred cHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHH----------HHHHHHHHhchhcCC-
Q 032375 23 SPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEE----------KLKDLREAFGLYDFD- 91 (142)
Q Consensus 23 ~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~----------~~~~~~~~f~~~d~~- 91 (142)
+.+.|+.++..++ +..+++.||..+..+..-.++..++..+++..-... ....+..+.+.|.++
T Consensus 206 ~~e~f~~~l~klc-----pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~ 280 (1189)
T KOG1265|consen 206 TLEKFYRLLNKLC-----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNS 280 (1189)
T ss_pred cHHHHHHHHHhcC-----CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCch
Confidence 3445566665553 457899999999877767899999999998432222 234566677777665
Q ss_pred ---CCCccCHHHHHHHHHH
Q 032375 92 ---NRGFISPNDLKRMLAK 107 (142)
Q Consensus 92 ---~~g~i~~~e~~~~l~~ 107 (142)
.+|.|+.+-|...|..
T Consensus 281 ~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 281 DNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhhccccchhhhHHHhhC
Confidence 4689999988888765
No 154
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=84.07 E-value=2.2 Score=32.01 Aligned_cols=59 Identities=27% Similarity=0.410 Sum_probs=42.4
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCC----cHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDV----LLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~----~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
+-+..+|..+|.++||-++..|+..+.... +-.+ +..+. .-.+..|.+++..|+..+..
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~--P~~pW~~~~~~~~------t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTA--PGSPWTSSPYKDS------TVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhC--CCCCCCCCccccc------ceecccceeehhhHHHHHHH
Confidence 346788999999999999999999998877 3332 11111 11225688999999987763
No 155
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=83.71 E-value=3.3 Score=21.84 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=24.5
Q ss_pred ccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh
Q 032375 60 LDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 60 v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 108 (142)
++|..+...+...-.......+...|..+ ..+.|+.+||.+.++..
T Consensus 9 ~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~---k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 9 MPFPMLFSALSKHLPPSKMDLLQKHYEEF---KKKKISREEFVRKLRQI 54 (70)
T ss_pred ccHHHHHHHHHHHCCHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHH
Confidence 55555555555444444434444444333 45667777777766663
No 156
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.24 E-value=2.5 Score=32.32 Aligned_cols=72 Identities=14% Similarity=0.383 Sum_probs=38.4
Q ss_pred ccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh---C-----CCCCHHHHHHHHHhcCCCCCcc
Q 032375 60 LDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL---G-----ESKSIDECRMMIDRFDLNGDGV 131 (142)
Q Consensus 60 v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---~-----~~~~~~~~~~~~~~~d~~~~g~ 131 (142)
+++++|. ... ..-+..++..|.++|. ++|.++.+++..++... + .....+....++...+.++.|.
T Consensus 4 ~~~~~~~--~~~---~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 77 (646)
T KOG0039|consen 4 ISFQELK--ITD---CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGY 77 (646)
T ss_pred cchhhhc--ccC---CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccce
Confidence 6666666 111 1223345666666665 67777777777666543 1 1122333455566666666665
Q ss_pred ccHHHH
Q 032375 132 LSFEEF 137 (142)
Q Consensus 132 i~~~ef 137 (142)
+.+.++
T Consensus 78 ~~~~~~ 83 (646)
T KOG0039|consen 78 ITNEDL 83 (646)
T ss_pred eeecch
Confidence 554443
No 157
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=82.87 E-value=1.5 Score=25.54 Aligned_cols=32 Identities=6% Similarity=0.185 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 40 VLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 40 ~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
+++++.+.++..+-.+..|.|.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 57889999999999999999999999988873
No 158
>PLN02230 phosphoinositide phospholipase C 4
Probab=82.58 E-value=10 Score=28.88 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCC---CcHHHHHHHHHhhcCC-------CCCcccHHHHHHHHhc
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGD---VLLNEVEVAIESLDKD-------GDGFLDLEDLVGLIEG 71 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~l~~~~d~~-------~~g~v~~~ef~~~~~~ 71 (142)
..++..+|..+-.++ +.|+.++|.++|... ... .+...+..++..+-.. ..+.++...|..++..
T Consensus 28 ~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~--Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYADGD-AHMSPEQLQKLMAEE--GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHhCCC-CccCHHHHHHHHHHh--CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 468899999996444 799999999999987 532 3566677777654221 2345999999998764
No 159
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=81.91 E-value=8 Score=30.62 Aligned_cols=125 Identities=14% Similarity=0.198 Sum_probs=69.0
Q ss_pred hcCCCCCcccHHHHHHHHhhhhCCCCCcH-HHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHH---HHHHHh--ch
Q 032375 14 FDENGDGKVSPSEIKNRMGMIVGGGDVLL-NEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLK---DLREAF--GL 87 (142)
Q Consensus 14 ~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~---~~~~~f--~~ 87 (142)
.|......|+..+++..|... .+.++. ..+..-+..... +.+.++|.+|..+........... .....| ..
T Consensus 153 vd~~~~~~isard~k~~l~qv--n~k~~~~kfl~e~~ted~~-~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~ 229 (1267)
T KOG1264|consen 153 VDQTRENSISARDLKTILPQV--NFKVSSAKFLKEKFTEDGA-RKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGN 229 (1267)
T ss_pred ccchhhhheeHHhhhcccccc--eEEechHHHHHHHHhHhhh-ccccccHHHHHHHHHHHhhccchhhhhcccchhhhcC
Confidence 454445568888888888777 555543 333333333332 346799999988776432211111 111111 11
Q ss_pred hcCCCCCccCHHHHHHHHHHhCCCCC---HHHHHHHHHhcCCC-----CCccccHHHHHhhh
Q 032375 88 YDFDNRGFISPNDLKRMLAKLGESKS---IDECRMMIDRFDLN-----GDGVLSFEEFRIMM 141 (142)
Q Consensus 88 ~d~~~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~~~~d~~-----~~g~i~~~ef~~~l 141 (142)
-+...--.++..+|.++|........ ...++.+++.+-.| ....+.+.||+.+|
T Consensus 230 ~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fL 291 (1267)
T KOG1264|consen 230 TDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFL 291 (1267)
T ss_pred CCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHH
Confidence 12223358999999999986532111 12344555544322 24468999998875
No 160
>PLN02223 phosphoinositide phospholipase C
Probab=81.90 E-value=8 Score=28.97 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=35.1
Q ss_pred HHHHHHhchhcCCCCCccCHHHHHHHH---HHh-C-CCCCHHHHHHHHHhcCCC--------CCccccHHHHHhhh
Q 032375 79 KDLREAFGLYDFDNRGFISPNDLKRML---AKL-G-ESKSIDECRMMIDRFDLN--------GDGVLSFEEFRIMM 141 (142)
Q Consensus 79 ~~~~~~f~~~d~~~~g~i~~~e~~~~l---~~~-~-~~~~~~~~~~~~~~~d~~--------~~g~i~~~ef~~~l 141 (142)
+.++.+|..+. ++.|.++.+.+.++| ... | ...+.++.+.++..+-.. ..+.++++.|..+|
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 45666677663 566777777777777 332 2 234444555555443211 12457888887765
No 161
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=80.34 E-value=1.4 Score=23.27 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=27.6
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhhC
Q 032375 103 RMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMMQ 142 (142)
Q Consensus 103 ~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 142 (142)
..+..+...+.......+...|+.=..++|+-++|++.++
T Consensus 13 ~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR 52 (70)
T PF12174_consen 13 MLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLR 52 (70)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3344444456666677777777655678999999998764
No 162
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=80.11 E-value=8.4 Score=21.62 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=45.4
Q ss_pred CCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC---ChHHHHHHHHHHhchhcCCCCC
Q 032375 18 GDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA---SAEEKLKDLREAFGLYDFDNRG 94 (142)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~---~~~~~~~~~~~~f~~~d~~~~g 94 (142)
-||.++..|...+-..+. .+.........+...+........++.+|...+... ....+..-+..++..--. ||
T Consensus 12 aDG~v~~~E~~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG 88 (106)
T cd07316 12 ADGRVSEAEIQAARALMD-QMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DG 88 (106)
T ss_pred ccCCcCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cC
Confidence 478899888775544442 334444444455554443322236678887777642 334444455555555432 47
Q ss_pred ccCHHHHH
Q 032375 95 FISPNDLK 102 (142)
Q Consensus 95 ~i~~~e~~ 102 (142)
.++..|-.
T Consensus 89 ~~~~~E~~ 96 (106)
T cd07316 89 ELSEAERE 96 (106)
T ss_pred CCCHHHHH
Confidence 77777643
No 163
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=79.90 E-value=11 Score=29.56 Aligned_cols=132 Identities=14% Similarity=0.018 Sum_probs=81.4
Q ss_pred HHHHHHHhcCC-CCCcccHHHHHHHHhhhhC------CCCCc-----HHHHHHHHHhhcCCCCCcccHHHHHHHHhcCCh
Q 032375 7 YERVFVYFDEN-GDGKVSPSEIKNRMGMIVG------GGDVL-----LNEVEVAIESLDKDGDGFLDLEDLVGLIEGASA 74 (142)
Q Consensus 7 ~~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~------~~~~~-----~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~ 74 (142)
..++|...+.. ++..+...+...+|..... |.-.. +.-+.-+++.||+..+|.|..-+|...+...+.
T Consensus 422 ~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lck 501 (966)
T KOG4286|consen 422 ALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLCK 501 (966)
T ss_pred HHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHhc
Confidence 44566666653 3455666666666644321 22111 234467888999999999999998887776666
Q ss_pred HHHHHHHHHHhchhcCCCCCccCHHHHHHH-------HHHh------CCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 75 EEKLKDLREAFGLYDFDNRGFISPNDLKRM-------LAKL------GESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 75 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~-------l~~~------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
....+.++.+|.....+++-.+ ...|... .+.+ |..--+..++.+|... ++...|+...|+..+
T Consensus 502 ~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~~v--~~~pei~~~~f~dw~ 578 (966)
T KOG4286|consen 502 AHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQFV--NNKPEIEAALFLDWM 578 (966)
T ss_pred chhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHHhc--CCCCcchHHHHHHHh
Confidence 6667788899999876655443 3333333 3333 3223344567777744 344468888887654
No 164
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=79.79 E-value=6.9 Score=22.46 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=43.5
Q ss_pred hhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh---CC-CCCHHHHHHHHHhcCC
Q 032375 51 SLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL---GE-SKSIDECRMMIDRFDL 126 (142)
Q Consensus 51 ~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~-~~~~~~~~~~~~~~d~ 126 (142)
.+|+..+..|+.++....+... .-|.+.|.....-||..=+.+++... |. -++...+..+++.++.
T Consensus 11 LYDT~tS~YITLedi~~lV~~g----------~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~ 80 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREG----------REFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYGG 80 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCC----------CeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCh
Confidence 3566667788888887777632 12677776666667777666666553 22 3556667777777764
Q ss_pred CCC
Q 032375 127 NGD 129 (142)
Q Consensus 127 ~~~ 129 (142)
.-.
T Consensus 81 ~~q 83 (107)
T TIGR01848 81 SMQ 83 (107)
T ss_pred hHH
Confidence 433
No 165
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=79.55 E-value=9.7 Score=22.03 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=36.5
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
.+|.+....++..+|.+++..+|...|......-+..+++.+.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 4566666778889999999999999999999888888888875
No 166
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.86 E-value=1.8 Score=30.52 Aligned_cols=65 Identities=23% Similarity=0.258 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcH-HHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLL-NEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
..+++++|+.+|+.++|.|+.+-+..++... ....++ ..+..+-+.+++..-|.|-...|+..+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~--N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~ 373 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTAL--NRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFF 373 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHh--cccccCHHHHHHhcCccChhhcceEEecccccccc
Confidence 4678899999999999999999999888877 644443 4555555566777667666666665544
No 167
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.80 E-value=13 Score=22.59 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=61.5
Q ss_pred HHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc-CChHHHHHHHHHHhchh
Q 032375 10 VFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG-ASAEEKLKDLREAFGLY 88 (142)
Q Consensus 10 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~-~~~~~~~~~~~~~f~~~ 88 (142)
.|+.... ||.++..|...+...+...+..+..++..++.....-+...+++..|...+.. .....+.+-+.-++...
T Consensus 35 lf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweIa 112 (148)
T COG4103 35 LFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEIA 112 (148)
T ss_pred HHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4555544 46777777655444332246788888998888887666677888999988874 45555556666666664
Q ss_pred cCCCCCccCHHHHHHHHHH
Q 032375 89 DFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 89 d~~~~g~i~~~e~~~~l~~ 107 (142)
- .+|.++..|-.-+.+.
T Consensus 113 ~--ADg~l~e~Ed~vi~Rv 129 (148)
T COG4103 113 Y--ADGELDESEDHVIWRV 129 (148)
T ss_pred H--ccccccHHHHHHHHHH
Confidence 3 4566777665555544
No 168
>PHA02105 hypothetical protein
Probab=77.43 E-value=7.4 Score=19.53 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=27.2
Q ss_pred ccCHHHHHHHHHHh---CCCCCHHHHHHHHHhcCCCC--CccccHHHHHhhh
Q 032375 95 FISPNDLKRMLAKL---GESKSIDECRMMIDRFDLNG--DGVLSFEEFRIMM 141 (142)
Q Consensus 95 ~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~l 141 (142)
++|.+||..++..- ..++..+.++.+-..+.... --.++|+||.+.|
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 45677777776653 23455555555555554433 2257888887654
No 169
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=76.67 E-value=4 Score=16.01 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=7.8
Q ss_pred cCCCCCccCHHHHH
Q 032375 89 DFDNRGFISPNDLK 102 (142)
Q Consensus 89 d~~~~g~i~~~e~~ 102 (142)
|.+++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34566666666554
No 170
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=76.55 E-value=21 Score=24.24 Aligned_cols=102 Identities=11% Similarity=0.129 Sum_probs=58.2
Q ss_pred CCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHH----HHHHhchhcCCC
Q 032375 17 NGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKD----LREAFGLYDFDN 92 (142)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~----~~~~f~~~d~~~ 92 (142)
--||.++..|.. ..+.+...+.++.+........++.......++.+|...+..... .+... +...|.+- --
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~-~r~~l~~~lL~~l~~vA--~A 142 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG-GRFDLLRMFLEIQIQAA--FA 142 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHH--Hh
Confidence 358899999998 555543234566666444455554444455888888887764321 11112 23344443 24
Q ss_pred CCccCHHHHHHHHHHh--CCCCCHHHHHHHHHh
Q 032375 93 RGFISPNDLKRMLAKL--GESKSIDECRMMIDR 123 (142)
Q Consensus 93 ~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~ 123 (142)
||.++..|- .+|+.. ...++..++..+...
T Consensus 143 DG~l~~~E~-~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 143 DGSLHPNER-QVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred cCCCCHHHH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 588888883 444443 245677666665544
No 171
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=75.88 E-value=9.2 Score=19.80 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=28.2
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 93 RGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 93 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
+-.|+.+-++..+.++|-.+|+..++.+++.+.
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 457899999999999999999999988887653
No 172
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=75.16 E-value=5.3 Score=22.42 Aligned_cols=77 Identities=12% Similarity=0.045 Sum_probs=35.3
Q ss_pred CCcccHHHHHHHHh---cCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCCCCCccc
Q 032375 57 DGFLDLEDLVGLIE---GASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLG-ESKSIDECRMMIDRFDLNGDGVL 132 (142)
Q Consensus 57 ~g~v~~~ef~~~~~---~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i 132 (142)
||.|+-.|-..+-. .... ........+...+........+..++...+.... .......+..++...- -||.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~--ADG~~ 89 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFG-LDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY--ADGEL 89 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--hcCCC
Confidence 67888777654432 2111 1122333444444434445566666666665432 1112222344455443 33555
Q ss_pred cHHH
Q 032375 133 SFEE 136 (142)
Q Consensus 133 ~~~e 136 (142)
+-.|
T Consensus 90 ~~~E 93 (104)
T cd07313 90 DEYE 93 (104)
T ss_pred CHHH
Confidence 5443
No 173
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=74.98 E-value=2.1 Score=27.14 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=33.5
Q ss_pred HHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHH
Q 032375 77 KLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDEC 117 (142)
Q Consensus 77 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~ 117 (142)
+.+..+++|..||+..--..+.+++.+++...|+.-...-+
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI 93 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKI 93 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHH
Confidence 46779999999999999999999999999888764443333
No 174
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=74.96 E-value=1.9 Score=27.72 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=36.1
Q ss_pred chhcC-CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 86 GLYDF-DNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 86 ~~~d~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
-.+|. ..+|+++..|+.-+-.. .-+-+.=+..++..+|.|++|.|+++||...+
T Consensus 194 ~qld~~p~d~~~sh~el~pl~ap--~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 194 GQLDQHPIDGYLSHTELAPLRAP--LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred ccccCCCccccccccccccccCC--cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 33443 45889998876533211 11223335788999999999999999997764
No 175
>PLN02223 phosphoinositide phospholipase C
Probab=72.50 E-value=31 Score=26.05 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=46.8
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHH---hhhhCCCCCcHHHHHHHHHhhcCCC--------CCcccHHHHHHHHhc
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRM---GMIVGGGDVLLNEVEVAIESLDKDG--------DGFLDLEDLVGLIEG 71 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l---~~~~~~~~~~~~~~~~l~~~~d~~~--------~g~v~~~ef~~~~~~ 71 (142)
...++.+|..+- .+.|.++.+.+.++| ...=+....+.++++.++..+-... .+.++.+.|..++..
T Consensus 15 p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 457888999984 567899999999988 4431113456677777777653322 256999999998875
No 176
>PRK00523 hypothetical protein; Provisional
Probab=72.45 E-value=12 Score=19.78 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=28.5
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 032375 92 NRGFISPNDLKRMLAKLGESKSIDECRMMIDRF 124 (142)
Q Consensus 92 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (142)
.+=.|+.+-++..+.++|-.+|+..++.+++.+
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345789999999999999999999999988876
No 177
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=71.02 E-value=9.9 Score=22.99 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=38.8
Q ss_pred CCCCccCHHHHHHHHHHhC---------CCCCHHHHHHHHHhcCCCCCc-cccHHHHHhh
Q 032375 91 DNRGFISPNDLKRMLAKLG---------ESKSIDECRMMIDRFDLNGDG-VLSFEEFRIM 140 (142)
Q Consensus 91 ~~~g~i~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 140 (142)
=|+-.||.+||.+.+..-. ..+++++++.+...+.....+ .+++.|-++.
T Consensus 79 lGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 79 LGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred ECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 3668999999999988752 257899999999998876655 4999887654
No 178
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=70.78 E-value=11 Score=19.41 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=16.1
Q ss_pred chhcCCCCCccCHHHHHHHHHH
Q 032375 86 GLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 86 ~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
+.||...+.+||.+++.++.+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4567777778888877777765
No 179
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=70.65 E-value=13 Score=19.41 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=21.4
Q ss_pred cHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCC
Q 032375 23 SPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDG 56 (142)
Q Consensus 23 ~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~ 56 (142)
+.+++..++... |..++..++..++++-+..+
T Consensus 15 ~d~~m~~if~l~--~~~vs~~el~a~lrke~~~~ 46 (68)
T PF07308_consen 15 KDDDMIEIFALA--GFEVSKAELSAWLRKEDEKG 46 (68)
T ss_pred ChHHHHHHHHHc--CCccCHHHHHHHHCCCCCcc
Confidence 335666677766 77777777777777755443
No 180
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=70.54 E-value=21 Score=21.63 Aligned_cols=68 Identities=10% Similarity=0.058 Sum_probs=32.5
Q ss_pred CcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC-------CCCcccHHHHHHHHhcCC-hHHHHHHHHHHhchhcCC
Q 032375 20 GKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD-------GDGFLDLEDLVGLIEGAS-AEEKLKDLREAFGLYDFD 91 (142)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~-------~~g~v~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~ 91 (142)
+.++++||.++-+-. .. +...++.++..|..+ ..+.|+|+.|..++..+. .....+-...+|..|-..
T Consensus 6 ~~lsp~eF~qLq~y~--ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYS--EY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp S-S-HHHHHHHHHHH--HH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eccCHHHHHHHHHHH--HH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 578888888654333 22 333455555555322 345788888888887652 223344556667776433
No 181
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=70.07 E-value=2 Score=27.58 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=32.6
Q ss_pred CCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHH
Q 032375 57 DGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLA 106 (142)
Q Consensus 57 ~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~ 106 (142)
+|.|+-.|+..+-.. ..+...-+...|...|.+++|+|+.+|+...+.
T Consensus 202 d~~~sh~el~pl~ap--~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAP--LIPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred cccccccccccccCC--cccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 455555554433222 233445677889999999999999999987763
No 182
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=69.18 E-value=14 Score=18.86 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=25.6
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 032375 93 RGFISPNDLKRMLAKLGESKSIDECRMMIDRF 124 (142)
Q Consensus 93 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (142)
+-.+|.+|+...+..++..++..++..++...
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 35688899999999988888888887777655
No 183
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=68.50 E-value=19 Score=25.36 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=29.9
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 92 NRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 92 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
..|.||++|-...+.........+.++.+++.++ ||-+||.+.+
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 3577888877777777544455566777777775 6667777654
No 184
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=67.81 E-value=9.8 Score=19.69 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=29.1
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 032375 92 NRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLN 127 (142)
Q Consensus 92 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~ 127 (142)
.++.++..++.+.|...|..++++.++..++.++.+
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~ 45 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERD 45 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHC
Confidence 456788888888888888888888888888887654
No 185
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=66.92 E-value=8.7 Score=28.34 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=43.4
Q ss_pred HhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhc---CC-----CCCccccHHHHHhhh
Q 032375 84 AFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRF---DL-----NGDGVLSFEEFRIMM 141 (142)
Q Consensus 84 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~l 141 (142)
+|..+-..+++.++...|..+|++.|...++.-+..++..+ +. ...+.++.+-|.+++
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 47888666789999999999999999988877777776554 21 123468888887654
No 186
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=66.79 E-value=20 Score=19.78 Aligned_cols=62 Identities=10% Similarity=-0.033 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 6 EYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
+-.+.+...=.+ .-.++-.+|+..|... .......+...+-..+|-..++.|+.-||-.+.+
T Consensus 8 eA~~FW~~~Fg~-r~IVPW~~F~~~L~~~--h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 8 EAAEFWKTSFGK-RTIVPWSEFRQALQKV--HPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp HHHHHHHHHHTT--SEEEHHHHHHHHHHH--S--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CeEeeHHHHHHHHHHh--cCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 344555553232 2469999999999998 5555557778888899999999999888876654
No 187
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=66.78 E-value=23 Score=20.65 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=35.5
Q ss_pred HHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 83 EAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 83 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
.+|.+.-..++..+|.+++..+|...|......-+..+++.+.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 3455555677788999999999999999988888888888875
No 188
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=66.57 E-value=20 Score=19.77 Aligned_cols=30 Identities=10% Similarity=0.140 Sum_probs=15.3
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 032375 95 FISPNDLKRMLAKLGESKSIDECRMMIDRF 124 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (142)
.||..||.......+.++++.....++..+
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~l 43 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANIL 43 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 345555555555555555555554444444
No 189
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=65.86 E-value=9.3 Score=20.36 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhcC-CCCCcccHHHHHHHHh
Q 032375 42 LNEVEVAIESLDK-DGDGFLDLEDLVGLIE 70 (142)
Q Consensus 42 ~~~~~~l~~~~d~-~~~g~v~~~ef~~~~~ 70 (142)
.+++......+.. -..|+|..+||...+.
T Consensus 12 ~e~~~~~~~ql~Q~~~~Gkv~~ee~n~~~e 41 (75)
T TIGR02675 12 AEEADGALIQLSQMLASGKLRGEEINSLLE 41 (75)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 3444444433322 2457777777777665
No 190
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=65.82 E-value=13 Score=17.50 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=20.8
Q ss_pred HHHHHHhchhcC--CCCCccCHHHHHHHHHH
Q 032375 79 KDLREAFGLYDF--DNRGFISPNDLKRMLAK 107 (142)
Q Consensus 79 ~~~~~~f~~~d~--~~~g~i~~~e~~~~l~~ 107 (142)
..+-.+|+.|.. ....+++..||+.++..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 346667877752 34678999999988876
No 191
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.76 E-value=18 Score=19.05 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=28.0
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 93 RGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 93 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
+=.|+.+-++..+.++|-.+|+..++.+++.+.
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 457899999999999999999999988887664
No 192
>PRK01844 hypothetical protein; Provisional
Probab=64.15 E-value=20 Score=19.01 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=27.9
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 032375 93 RGFISPNDLKRMLAKLGESKSIDECRMMIDRF 124 (142)
Q Consensus 93 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (142)
+=.|+.+-++..+.++|-.+|+..++.+++.+
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44789999999999999999999999888876
No 193
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=63.75 E-value=17 Score=23.18 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=21.3
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 89 DFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 89 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
..+.+|.+..+++.+.+..-+..++.+++..++..-+
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 3567788888888888777666677777877776644
No 194
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=63.58 E-value=16 Score=18.73 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=19.2
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 032375 95 FISPNDLKRMLAKLGESKSIDECRMMI 121 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~~~~~~~~~~ 121 (142)
.|+.++|..+|+.....++..++....
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 577888888888877777777775543
No 195
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=62.94 E-value=28 Score=20.29 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032375 7 YERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVG 67 (142)
Q Consensus 7 ~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~ 67 (142)
+-..|..+...++..++..++..+|... |..+...++..++..+. ..+..+++.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~Aa--GveVd~~~~~l~~~~L~-----GKdI~ELIa 58 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAV--NADVEDDVLDNFFKSLE-----GKTPHELIA 58 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHc--CCCccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 3445666666677779999999999999 99999999999988883 245566554
No 196
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=60.42 E-value=29 Score=21.69 Aligned_cols=47 Identities=9% Similarity=0.168 Sum_probs=26.7
Q ss_pred HHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 032375 77 KLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRF 124 (142)
Q Consensus 77 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (142)
...++..++..+-..+...++..+|...+ ..|..++++++...+..+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHH
Confidence 34556777777755555678888888776 347788888887666544
No 197
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=60.17 E-value=24 Score=19.08 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC-CccccHHHHHhhh
Q 032375 98 PNDLKRMLAKLGESKSIDECRMMIDRFDLNG-DGVLSFEEFRIMM 141 (142)
Q Consensus 98 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~-~g~i~~~ef~~~l 141 (142)
.+++...| .|.+.+.+.+...+...+.+. -+.++.++|++++
T Consensus 44 i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 45555555 466778888888888875543 4578888888764
No 198
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=58.90 E-value=24 Score=18.54 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=25.8
Q ss_pred HHHHHhchhcCCCCCccCHHHHHHHHHHh----CCCCCHHHHHHHHHhc
Q 032375 80 DLREAFGLYDFDNRGFISPNDLKRMLAKL----GESKSIDECRMMIDRF 124 (142)
Q Consensus 80 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 124 (142)
.+..+...++....--+-..+++.++..+ |...+++.++.+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 34444555544444455566777777665 6666777778888765
No 199
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=58.75 E-value=7.4 Score=33.15 Aligned_cols=66 Identities=8% Similarity=0.014 Sum_probs=47.0
Q ss_pred hhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhC--CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 4 GREYERVFVYFDENGDGKVSPSEIKNRMGMIVG--GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 4 ~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
-+++.++|..+|++..|.|...++...++.+.+ +++..... +.+........++.|++.+-+.++.
T Consensus 1416 ~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1416 FEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred HHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 467889999999999999999999999998832 11111111 3333344445778899988887766
No 200
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=58.03 E-value=35 Score=19.77 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=42.4
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 032375 8 ERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLI 69 (142)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 69 (142)
-..|..+...++..++.+++..+|... |..+...++..+++.+. ..+..+++..-
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~Aa--GveVe~~~~~lf~~~L~-----GKdi~eLIa~g 58 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSV--GVEVDDEKLNKVISELE-----GKDVEELIAAG 58 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHc--CCCccHHHHHHHHHHHc-----CCCHHHHHHHh
Confidence 345666666677789999999999999 99999999998888883 24566666543
No 201
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=57.67 E-value=27 Score=21.23 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=24.7
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 032375 95 FISPNDLKRMLAKLGESKSIDECRMMIDRFDL 126 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 126 (142)
..|+++++.+...+...++++++..++..++.
T Consensus 26 IWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 26 IWTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred EecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 56778888887767777888888888887765
No 202
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=57.42 E-value=12 Score=23.93 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=37.7
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHh
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIES 51 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~ 51 (142)
+++.++++|..||+..--.++.+++.+++..- |+.-....+..++..
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~--gIIR~r~KI~A~i~N 99 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADA--GIIRNRGKIKATINN 99 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCc--chhhhHHHHHHHHHH
Confidence 56789999999999998899999999999887 776666666555443
No 203
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=57.01 E-value=82 Score=23.69 Aligned_cols=59 Identities=14% Similarity=-0.008 Sum_probs=36.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 9 RVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 9 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
.+|..+-+.+...++..+++..+..+ |......+-...|...+.+.. .+.|..++..+.
T Consensus 489 ~~f~h~lkk~~~~lsdsd~~a~l~sl--gl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~ 547 (612)
T COG5069 489 ALFNHVLKKDGCGLSDSDLCAWLGSL--GLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIH 547 (612)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHh--ccccCCccceeeccCCccccc-cchHHHHHHHHh
Confidence 34555545556678888999888888 776665544444444332222 366666766555
No 204
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.99 E-value=7.8 Score=24.60 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=33.2
Q ss_pred HHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 032375 77 KLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMI 121 (142)
Q Consensus 77 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 121 (142)
+.+.++++|.-||+..--..+.+++.+++..-++--+..-+.+++
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi 95 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATI 95 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHH
Confidence 467788999999999888889999888887766544444444433
No 205
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=56.74 E-value=38 Score=21.57 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=22.9
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 90 FDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 90 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
.+.+|.+..+++...+..-+..++.+.+..++..-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 466677777777776655444566666666665443
No 206
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=56.68 E-value=82 Score=23.64 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=43.5
Q ss_pred HHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhh---cC-----CCCCcccHHHHHHHHh
Q 032375 10 VFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESL---DK-----DGDGFLDLEDLVGLIE 70 (142)
Q Consensus 10 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~---d~-----~~~g~v~~~ef~~~~~ 70 (142)
+|..+-..+++.++...|..+|+.. |+.-++..+..++..+ +. ...+.++-+.|...+.
T Consensus 91 LFyLiaegq~ekipihKFiTALkst--GLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKST--GLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHc--CCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 5666655567999999999999999 9998877776666554 32 2345688888887665
No 207
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=56.45 E-value=21 Score=22.01 Aligned_cols=84 Identities=14% Similarity=0.214 Sum_probs=48.0
Q ss_pred hHHHHHHHHhcCCC----CC-cccHHHHHHHHhhh--hCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC-----
Q 032375 5 REYERVFVYFDENG----DG-KVSPSEIKNRMGMI--VGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA----- 72 (142)
Q Consensus 5 ~~~~~~f~~~d~~~----~g-~i~~~e~~~~l~~~--~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~----- 72 (142)
..+++.|+.|-..+ +| .|+-..|-..++.. ..|-.++..+....|..+--..-+.++|++|..++..+
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R~ 91 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKRF 91 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhhh
Confidence 44666677764433 33 47777777777665 11233455566666666654455689999997776532
Q ss_pred ChHHHHHHHHHHhchh
Q 032375 73 SAEEKLKDLREAFGLY 88 (142)
Q Consensus 73 ~~~~~~~~~~~~f~~~ 88 (142)
......+.+..+.+.+
T Consensus 92 k~Ks~ee~l~~I~~ll 107 (180)
T KOG4070|consen 92 KGKSKEEALDAICQLL 107 (180)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 1223344455454444
No 208
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=56.40 E-value=37 Score=19.52 Aligned_cols=30 Identities=10% Similarity=0.430 Sum_probs=27.5
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 96 ISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 96 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
+|.+++..+|...|..+...-+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc
Confidence 999999999999999999999999988874
No 209
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=55.62 E-value=6.3 Score=25.19 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=32.4
Q ss_pred HHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHH
Q 032375 77 KLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMM 120 (142)
Q Consensus 77 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 120 (142)
+.+.++++|.-||+..--..+.+++.+++..-++--+..-++++
T Consensus 52 Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Av 95 (187)
T PRK10353 52 KRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAI 95 (187)
T ss_pred HHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHH
Confidence 46778999999999888888899998888776654343334333
No 210
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=53.05 E-value=40 Score=18.87 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=39.8
Q ss_pred CCCcccHHHHHHHHhhhhCCCC---CcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCC-hHHHHHHHHHHhchhcCCCC
Q 032375 18 GDGKVSPSEIKNRMGMIVGGGD---VLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGAS-AEEKLKDLREAFGLYDFDNR 93 (142)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~---~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~-~~~~~~~~~~~f~~~d~~~~ 93 (142)
-||.++.+|...+...+..... .....+..++...-..- -..+..++...+.... ...+..-+..++.... -+
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~--aD 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAA--AD 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--cc
Confidence 3788888888777666521112 23344455554443220 0233455666555433 3333334444455543 34
Q ss_pred CccCHHH
Q 032375 94 GFISPND 100 (142)
Q Consensus 94 g~i~~~e 100 (142)
|.++..|
T Consensus 92 G~~~~~E 98 (111)
T cd07176 92 GEVDPEE 98 (111)
T ss_pred CCCCHHH
Confidence 6666655
No 211
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=53.00 E-value=30 Score=22.14 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC
Q 032375 16 ENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD 55 (142)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~ 55 (142)
.+.+|++..+++.+.+..- +..++.+++..++...++.
T Consensus 27 ~d~~G~v~v~dLL~~~~~~--~~~~t~~~i~~vV~~~~K~ 64 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFK--GLWVTEEDIREVVETDDKQ 64 (186)
T ss_dssp --TT--EEHHHHHHHHHHT---TT--HHHHHHHHHH-SS-
T ss_pred cCCCCCEeHHHHHHHHHHc--CCCCCHHHHHHHHhhCCCC
Confidence 4678899999998888876 7778888888888776543
No 212
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=52.83 E-value=53 Score=20.26 Aligned_cols=73 Identities=12% Similarity=0.284 Sum_probs=39.1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh-----CCCCCHHHHH
Q 032375 44 EVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL-----GESKSIDECR 118 (142)
Q Consensus 44 ~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~ 118 (142)
.+..++..-+.+.++.|++..|...++..... .+..-|. .+...++.++++..+... ......++.+
T Consensus 84 ~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGd----WIT~~~L----kh~n~MSk~Qik~L~~~Ii~~akae~~dtE~Ye 155 (175)
T PF04876_consen 84 FLEHLLGGEDDSTNGLIDIGKFFDILQPKLGD----WITKNFL----KHPNRMSKDQIKTLCEQIIEMAKAESSDTEHYE 155 (175)
T ss_pred HHHHHhcCCcCCcccceeHHHHHHHHHHHhhh----HHHHHHH----hccchhhHHHHHHHHHHHHHHHhccCCchHHHH
Confidence 34444444344446778888888888743221 1222222 234567777777776553 2334455555
Q ss_pred HHHHhc
Q 032375 119 MMIDRF 124 (142)
Q Consensus 119 ~~~~~~ 124 (142)
.+++.+
T Consensus 156 ~vwkKm 161 (175)
T PF04876_consen 156 KVWKKM 161 (175)
T ss_pred HHHHHh
Confidence 555443
No 213
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=51.90 E-value=47 Score=19.41 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032375 8 ERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVG 67 (142)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~ 67 (142)
-..|..+-..++..++.+++..+|... |......++..++..+. ..+..+.+.
T Consensus 4 vaAyll~~l~g~~~pta~dI~~IL~Aa--Gvevd~~~~~~f~~~L~-----gK~i~eLIa 56 (113)
T PLN00138 4 VAAYLLAVLGGNTCPSAEDLKDILGSV--GADADDDRIELLLSEVK-----GKDITELIA 56 (113)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHc--CCcccHHHHHHHHHHHc-----CCCHHHHHH
Confidence 345555555666789999999999999 99999999988888883 145566653
No 214
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.23 E-value=79 Score=21.53 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=51.9
Q ss_pred chhHHHHHHHHh-cCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 3 KGREYERVFVYF-DENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 3 ~~~~~~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
+...+.+.|..+ |+.-+..|-++-+.+++..+ |+.+..-.+-.+.-.+....-+..+..+|+.-+..
T Consensus 62 s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dl--g~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 62 SEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDL--GVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred cHHHHHHHHHHhcCcccccccChHHHHHHHHHh--CCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 456677777775 55555688888899999999 98888777777777777777788999999886553
No 215
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=49.88 E-value=43 Score=21.30 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=28.7
Q ss_pred CCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcC
Q 032375 16 ENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDK 54 (142)
Q Consensus 16 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~ 54 (142)
-+.+|+++.+++.+.++.- +...+.+.+.++...-++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~--~~~~t~~~l~~vV~~d~K 64 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKA--YKWVTRELLEAVVESDDK 64 (179)
T ss_pred cCCCCCEEHHHHHHHHHHc--cCCCCHHHHHHHHHcCCC
Confidence 3678999999999888765 666788888888776654
No 216
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=49.57 E-value=38 Score=23.92 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=40.7
Q ss_pred chhHHHHHHHHh--cCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHH
Q 032375 3 KGREYERVFVYF--DENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKD 80 (142)
Q Consensus 3 ~~~~~~~~f~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~ 80 (142)
.++++..+...+ |.|...-+-.++|.+....+ .-......++-+.+.+-..=+|.|-|.|...-+... -..
T Consensus 43 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l--~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-----nP~ 115 (355)
T PRK13654 43 NREELDAILEEMRADYNRHHFVRDEEFDQDWDHL--DPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR-----NPL 115 (355)
T ss_pred hHHHHHHHHHHHHhCcccccccCChhhhhchhhC--CHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc-----CcH
Confidence 345566666554 34444455555665544333 222223344455555544445666666665554421 134
Q ss_pred HHHHhchhcCC
Q 032375 81 LREAFGLYDFD 91 (142)
Q Consensus 81 ~~~~f~~~d~~ 91 (142)
+.++|.....|
T Consensus 116 lae~F~lMaRD 126 (355)
T PRK13654 116 LAELFQLMARD 126 (355)
T ss_pred HHHHHHHHhhh
Confidence 55666666544
No 217
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=49.33 E-value=52 Score=19.11 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHH
Q 032375 8 ERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVG 67 (142)
Q Consensus 8 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~ 67 (142)
-..|..+...++-.-+..+++.+|... |.....+.+..++..+. |+ +.+|.+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sV--G~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESV--GAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHh--CcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 355666777777778889999999999 99999999999998883 33 5666654
No 218
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=49.22 E-value=37 Score=23.87 Aligned_cols=82 Identities=22% Similarity=0.165 Sum_probs=38.6
Q ss_pred chhHHHHHHHHh--cCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHH
Q 032375 3 KGREYERVFVYF--DENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKD 80 (142)
Q Consensus 3 ~~~~~~~~f~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~ 80 (142)
.++++..+...+ |.|...-+-.++|.+....+ .-......++-+.+.+-..=+|.|-|.|...-+... ...
T Consensus 39 ~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l--~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~-----nP~ 111 (351)
T CHL00185 39 NIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNL--DEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK-----NPL 111 (351)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhhhchhhC--CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC-----CcH
Confidence 345555555554 33444445555565533333 111222334444444444445556666655544321 123
Q ss_pred HHHHhchhcCC
Q 032375 81 LREAFGLYDFD 91 (142)
Q Consensus 81 ~~~~f~~~d~~ 91 (142)
+.++|.....|
T Consensus 112 lae~F~lMaRD 122 (351)
T CHL00185 112 LAEGFLLMSRD 122 (351)
T ss_pred HHHHHHHHhhh
Confidence 55566666544
No 219
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=48.64 E-value=52 Score=18.99 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=28.0
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 95 FISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
.||.+.+..+|...|..+...-+..+++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 8999999999999999999888888888774
No 220
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=48.57 E-value=33 Score=16.69 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=20.0
Q ss_pred CCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC
Q 032375 19 DGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD 55 (142)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~ 55 (142)
.|.++..+|+..+.. +...+..++..+|..
T Consensus 8 ~~~itv~~~rd~lg~-------sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLGL-------SRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHTS--------HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHCc-------cHHHHHHHHHHHhcc
Confidence 677888888876643 366666677777654
No 221
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=48.34 E-value=52 Score=23.24 Aligned_cols=82 Identities=24% Similarity=0.214 Sum_probs=40.2
Q ss_pred hhHHHHHHHHh--cCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHH
Q 032375 4 GREYERVFVYF--DENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDL 81 (142)
Q Consensus 4 ~~~~~~~f~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~ 81 (142)
++++..+...+ |.|...-+-.++|......+ .-......++-+.+.+-..=+|.|-|.|...-+... ...+
T Consensus 40 ~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l--~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-----nP~l 112 (357)
T PLN02508 40 MAEFEALLQEFKTDYNQTHFVRNEEFKAAADKI--QGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKT-----NPVV 112 (357)
T ss_pred HHHHHHHHHHHHhCccccccccChhhccchhhC--CHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccC-----ChHH
Confidence 44555555554 33444445555555433333 222223344455555544556666666666555421 2345
Q ss_pred HHHhchhcCCC
Q 032375 82 REAFGLYDFDN 92 (142)
Q Consensus 82 ~~~f~~~d~~~ 92 (142)
.++|....+|.
T Consensus 113 ae~F~lMaRDE 123 (357)
T PLN02508 113 AEIFTLMSRDE 123 (357)
T ss_pred HHHHHHhCchh
Confidence 66677665553
No 222
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=48.30 E-value=26 Score=15.35 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=12.7
Q ss_pred ccCHHHHHHHHHHhCCCC
Q 032375 95 FISPNDLKRMLAKLGESK 112 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~ 112 (142)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 466778888888776543
No 223
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=47.42 E-value=67 Score=20.47 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=10.7
Q ss_pred cCCCCCcccHHHHHHHHhc
Q 032375 53 DKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 53 d~~~~g~v~~~ef~~~~~~ 71 (142)
.++...+++.++|+..+..
T Consensus 145 n~~~k~kmt~~~Fi~~~~~ 163 (187)
T smart00222 145 NPNVKKKMTLEDFIKNVRG 163 (187)
T ss_pred CCccCCCCCHHHHHHHHhc
Confidence 3333445666777666654
No 224
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=47.22 E-value=33 Score=16.26 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHh
Q 032375 99 NDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRI 139 (142)
Q Consensus 99 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 139 (142)
+|...+|..+| .+..++..++..... ...++.++.++
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 45666777776 567777777777753 23355666554
No 225
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.71 E-value=90 Score=24.35 Aligned_cols=68 Identities=24% Similarity=0.323 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC--------ChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHH
Q 032375 39 DVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA--------SAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 39 ~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~--------~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
...+..++.++..+|. .+|.++.+++...+... ......+....++...|.++.|++...++...+..
T Consensus 14 ~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 14 CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 3445556666666665 55666666665554421 01111222334566666677777777666666654
No 226
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=46.06 E-value=27 Score=24.73 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=41.9
Q ss_pred HhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhhh
Q 032375 84 AFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 84 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 141 (142)
....+|..+.|.++.--.+-+|..+..+--.+.++.++.... +..|-+.+..|.+++
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 345689999999999888888887754445567788888887 566766666665544
No 227
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=45.43 E-value=25 Score=15.17 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=4.8
Q ss_pred cCHHHHHHHHH
Q 032375 96 ISPNDLKRMLA 106 (142)
Q Consensus 96 i~~~e~~~~l~ 106 (142)
||.+|++++|.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555555553
No 228
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=44.69 E-value=51 Score=17.76 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=14.7
Q ss_pred CCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC
Q 032375 19 DGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD 55 (142)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~ 55 (142)
.|+||..++..+|... .++...+..++..+...
T Consensus 19 ~G~lT~~eI~~~L~~~----~~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 19 KGYLTYDEINDALPED----DLDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HSS-BHHHHHHH-S-S-------HHHHHHHHHHHHTT
T ss_pred cCcCCHHHHHHHcCcc----CCCHHHHHHHHHHHHHC
Confidence 4556666666655533 24445555555555433
No 229
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=43.72 E-value=60 Score=22.65 Aligned_cols=81 Identities=22% Similarity=0.212 Sum_probs=39.1
Q ss_pred hhHHHHHHHHh--cCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHH
Q 032375 4 GREYERVFVYF--DENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDL 81 (142)
Q Consensus 4 ~~~~~~~f~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~ 81 (142)
++++..+...+ |.|...-+-.++|......+ .-......++-+.+.+-..=+|-|-|.|...-+... ...+
T Consensus 24 ~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~--~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-----nP~l 96 (323)
T cd01047 24 REEFEAMLAEFKADYNRHHFVRNDEFDQAADKI--DPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT-----NPVV 96 (323)
T ss_pred HHHHHHHHHHHHhCcccccccCCchhhhhhhhC--CHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC-----CcHH
Confidence 45555555554 33444445555555443333 222233344445555544445666666655544421 1235
Q ss_pred HHHhchhcCC
Q 032375 82 REAFGLYDFD 91 (142)
Q Consensus 82 ~~~f~~~d~~ 91 (142)
.++|.....|
T Consensus 97 ae~F~lMaRD 106 (323)
T cd01047 97 AELFRLMARD 106 (323)
T ss_pred HHHHHHHhhh
Confidence 5666666544
No 230
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=43.60 E-value=65 Score=18.66 Aligned_cols=39 Identities=15% Similarity=0.288 Sum_probs=32.1
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHH
Q 032375 95 FISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFR 138 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 138 (142)
.||.+.+..++...|..+.+.-++.++..+. .++++|.+
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe-----g~~idE~i 54 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE-----GVDIDEVI 54 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc-----CCCHHHHH
Confidence 8999999999999999999888888888775 24556554
No 231
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=43.19 E-value=58 Score=17.96 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=15.8
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 032375 96 ISPNDLKRMLAKLGESKSIDECRMMID 122 (142)
Q Consensus 96 i~~~e~~~~l~~~~~~~~~~~~~~~~~ 122 (142)
|+.+++..+..-....++++++..+..
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~ 27 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAG 27 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 455666666666666666666544433
No 232
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=42.77 E-value=33 Score=15.12 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=11.6
Q ss_pred ccCHHHHHHHHHHhCCCC
Q 032375 95 FISPNDLKRMLAKLGESK 112 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~ 112 (142)
.++..|++..++..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 456677777777776543
No 233
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=42.47 E-value=49 Score=16.91 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=19.0
Q ss_pred HHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 28 KNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
+.+|+.+..|..++.+++..++..+-.+.-..+....|+..+.
T Consensus 3 ~~~l~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al~ 45 (66)
T PF02885_consen 3 KEILKKLRDGEDLSREEAKAAFDAILDGEVSDAQIAAFLMALR 45 (66)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4445555446666677777776666433322333334444443
No 234
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=42.28 E-value=50 Score=16.98 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=22.1
Q ss_pred CCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHH
Q 032375 19 DGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGL 68 (142)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~ 68 (142)
+|.++.+++...++.. +..+++..=|.-++.+|+..
T Consensus 21 ~g~v~ls~l~~~~~~~--------------~~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKKK--------------YPDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp TSSEEHHHHHHHHHHH--------------HTT--TCCTTSSSHHHHHHT
T ss_pred CceEEHHHHHHHHHHH--------------CCCCCccccCCCcHHHHHHh
Confidence 5567777777666554 34556666677777777754
No 235
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.66 E-value=26 Score=22.28 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=43.0
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhc----CCCCCcccHHHHHHHH
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLD----KDGDGFLDLEDLVGLI 69 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d----~~~~g~v~~~ef~~~~ 69 (142)
+++.++++|..||...--.++.+++.+++..- ++.-....+..++.... ... . ++..|+..+
T Consensus 51 Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~--~IIRnr~KI~Avi~NA~~~l~i~~-e--sf~~ylW~f 116 (179)
T TIGR00624 51 KRENYRRAFSGFDIVKVARMTDADVERLLQDD--GIIRNRGKIEATIANARAALQLEQ-N--DLVEFLWSF 116 (179)
T ss_pred hHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCc--cchhhHHHHHHHHHHHHHHHHHHH-c--cHHHHHHhc
Confidence 56788999999999888888999999888776 66666665655544221 111 1 677777554
No 236
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.49 E-value=51 Score=19.29 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=23.1
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 032375 96 ISPNDLKRMLAKLGESKSIDECRMMIDRF 124 (142)
Q Consensus 96 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (142)
-|..|++.++...+..++.++++.++...
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv 108 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIV 108 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 36778999998888888888888877654
No 237
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=41.20 E-value=84 Score=19.22 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=23.2
Q ss_pred HHHhCCCCCHHHHHHHH----------HhcCCCCCccccHHHHHhhh
Q 032375 105 LAKLGESKSIDECRMMI----------DRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 105 l~~~~~~~~~~~~~~~~----------~~~d~~~~g~i~~~ef~~~l 141 (142)
+..+|..++++++..++ ..+-.+.+|..+-..+.+++
T Consensus 99 ~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 99 FEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 34457777777776666 11223568888888777654
No 238
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=41.07 E-value=35 Score=14.83 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=10.6
Q ss_pred CCccCHHHHHHHHHH
Q 032375 93 RGFISPNDLKRMLAK 107 (142)
Q Consensus 93 ~g~i~~~e~~~~l~~ 107 (142)
.|.|+.+++..+...
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 567777777777654
No 239
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.60 E-value=45 Score=15.91 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=21.0
Q ss_pred CCCccC-HHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 032375 92 NRGFIS-PNDLKRMLAKLGESKSIDECRMMIDRF 124 (142)
Q Consensus 92 ~~g~i~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (142)
..|.|+ ..++.+.|...|..+++..++.+++.+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 346665 444444555558888888888777654
No 240
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=40.46 E-value=75 Score=18.44 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 032375 97 SPNDLKRMLAKLGESKSIDECRMMIDRF 124 (142)
Q Consensus 97 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 124 (142)
+.+|++.++......+++++++.++...
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4566666666666666666666665543
No 241
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=40.39 E-value=72 Score=21.73 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=5.6
Q ss_pred CCcccHHHHH
Q 032375 57 DGFLDLEDLV 66 (142)
Q Consensus 57 ~g~v~~~ef~ 66 (142)
||.|+-.|..
T Consensus 69 DG~Vse~Ei~ 78 (267)
T PRK09430 69 KGRVTEADIR 78 (267)
T ss_pred CCCcCHHHHH
Confidence 4556655554
No 242
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.53 E-value=51 Score=24.22 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=51.1
Q ss_pred CCCCcccHHHHHHHHhhhhC-C-CCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHH-HHHHHHHHhchhcCCCC
Q 032375 17 NGDGKVSPSEIKNRMGMIVG-G-GDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEE-KLKDLREAFGLYDFDNR 93 (142)
Q Consensus 17 ~~~g~i~~~e~~~~l~~~~~-~-~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~-~~~~~~~~f~~~d~~~~ 93 (142)
.|+...+..||+.+....+. + -.+.-+-++.+-+.+|-+.+|.|+.+|=-.++....... ....-.+.|+. .+
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Cc
Confidence 34445666666655443321 1 234456677788888888999999887655555321111 11111224544 45
Q ss_pred CccCHHHHHHHHHHh
Q 032375 94 GFISPNDLKRMLAKL 108 (142)
Q Consensus 94 g~i~~~e~~~~l~~~ 108 (142)
..||.+++-.++...
T Consensus 116 ~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 116 KHITVEDLWEAWKES 130 (575)
T ss_pred cceeHHHHHHHHHhh
Confidence 688999888887764
No 243
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=38.48 E-value=1.1e+02 Score=19.90 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=22.8
Q ss_pred CCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 032375 18 GDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLI 69 (142)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~ 69 (142)
=+|+|+.++....+...+ . ..+...+.... -++.+++.+...-+
T Consensus 10 FDGTITl~Ds~~~itdtf---~--~~e~k~l~~~v---ls~tiS~rd~~g~m 53 (220)
T COG4359 10 FDGTITLNDSNDYITDTF---G--PGEWKALKDGV---LSKTISFRDGFGRM 53 (220)
T ss_pred CCCceEecchhHHHHhcc---C--chHHHHHHHHH---hhCceeHHHHHHHH
Confidence 467777777777765542 1 22222444333 34566666654433
No 244
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=38.23 E-value=58 Score=22.85 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=36.0
Q ss_pred hhHHHHHHHHh--cCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHH
Q 032375 4 GREYERVFVYF--DENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDL 81 (142)
Q Consensus 4 ~~~~~~~f~~~--d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~ 81 (142)
++++..+...+ |.|...-+-.++|.+....+ .-......++-+.+.+-..=+|.|-|.|...-+.. ....+
T Consensus 34 ~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l--~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~-----~~P~l 106 (337)
T TIGR02029 34 ENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHI--DGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN-----RDPVV 106 (337)
T ss_pred HHHHHHHHHHHHhCccccccccChhhhcchhhC--CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC-----CChHH
Confidence 44555555554 33333444445554433222 11112223444444444444555555555544432 11235
Q ss_pred HHHhchhcCC
Q 032375 82 REAFGLYDFD 91 (142)
Q Consensus 82 ~~~f~~~d~~ 91 (142)
.++|.....|
T Consensus 107 ae~F~~MaRD 116 (337)
T TIGR02029 107 AELFQLMARD 116 (337)
T ss_pred HHHHHHHhhh
Confidence 5666666544
No 245
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=38.20 E-value=89 Score=23.08 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=39.2
Q ss_pred CCCCcccHHHHHHHHhcC----ChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHH
Q 032375 55 DGDGFLDLEDLVGLIEGA----SAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 55 ~~~g~v~~~ef~~~~~~~----~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
.++...+..||....... ...-..+.++.+-+..|.|.+|.|..+|=-.+++.
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 455667777786654422 12334567888889999999999999999889886
No 246
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=37.57 E-value=81 Score=18.04 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=28.3
Q ss_pred CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 91 DNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 91 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
+..-.+|.+++..+|...|......-+..+.+.+.
T Consensus 13 d~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~ 47 (103)
T cd05831 13 DDGIEITADNINALLKAAGVNVEPYWPGLFAKALE 47 (103)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 34558999999999999998888877777777764
No 247
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=37.49 E-value=73 Score=17.43 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=9.2
Q ss_pred hhcCCCCCccCHHHHHHH
Q 032375 87 LYDFDNRGFISPNDLKRM 104 (142)
Q Consensus 87 ~~d~~~~g~i~~~e~~~~ 104 (142)
..+.+.+|.|+.+-+..+
T Consensus 31 ~~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 31 QIEKSRDGYIDISLLVSF 48 (82)
T ss_pred HhcCCCCCCEeHHHHhcc
Confidence 344455666666544433
No 248
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=37.32 E-value=38 Score=17.22 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=8.1
Q ss_pred HHHhcCCCCCccccHHHH
Q 032375 120 MIDRFDLNGDGVLSFEEF 137 (142)
Q Consensus 120 ~~~~~d~~~~g~i~~~ef 137 (142)
+...++.+++|.|++..+
T Consensus 20 L~~~~~~~~~g~Vpi~~i 37 (61)
T PF05383_consen 20 LRSQMDSNPDGWVPISTI 37 (61)
T ss_dssp HHHHHCTTTTTBEEHHHH
T ss_pred HHHHHHhcCCCcEeHHHH
Confidence 333444444555554443
No 249
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=36.71 E-value=31 Score=18.52 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=14.1
Q ss_pred cCCCCCccccHHHHHhhh
Q 032375 124 FDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 124 ~d~~~~g~i~~~ef~~~l 141 (142)
...|..|.|+++.|++.+
T Consensus 11 ~~~n~~G~iTl~gfLa~W 28 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQW 28 (76)
T ss_pred eEEcCCCcCcHHHHHHHH
Confidence 455788999999998754
No 250
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=36.58 E-value=20 Score=30.83 Aligned_cols=64 Identities=14% Similarity=0.214 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCC----HHHHHHHHHhcCCCCCccccHHHHHh
Q 032375 75 EEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKS----IDECRMMIDRFDLNGDGVLSFEEFRI 139 (142)
Q Consensus 75 ~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~ 139 (142)
..+.+...+++..+|++..|.|...++..+++.+..++. ... +.+--.+..+.++.|++.+-+.
T Consensus 1413 ~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~ 1480 (1592)
T KOG2301|consen 1413 EDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILF 1480 (1592)
T ss_pred cccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHH
Confidence 345567788899999999999999999999999843321 111 2222233334556666665443
No 251
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=36.54 E-value=31 Score=21.96 Aligned_cols=65 Identities=17% Similarity=0.191 Sum_probs=40.9
Q ss_pred chhHHHHHHHHhcCCCCCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcC----CCCCcccHHHHHHHHh
Q 032375 3 KGREYERVFVYFDENGDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDK----DGDGFLDLEDLVGLIE 70 (142)
Q Consensus 3 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~----~~~g~v~~~ef~~~~~ 70 (142)
+...++++|..||...--.++.+++.+++..- ++.-+...+..++..... ... .-++.+|+..+.
T Consensus 47 Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~--~iIRnr~KI~Avi~NA~~~l~i~~e-~gsF~~ylw~f~ 115 (179)
T PF03352_consen 47 KREAFREAFAGFDPEKVAKMDEEDIERLMQDP--GIIRNRRKIRAVINNARAILKIQEE-FGSFSDYLWSFV 115 (179)
T ss_dssp THHHHHHHTGGGHHHHHHT--HHHHHHHTTST--TSS--HHHHHHHHHHHHHHHHHHHT-TS-HHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCc--chhhhHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHhcC
Confidence 46788999999999888888999999988877 776676666655544311 111 135677766554
No 252
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=36.39 E-value=42 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=12.3
Q ss_pred HHHhcCCCCCcccHHHHHHHHhh
Q 032375 11 FVYFDENGDGKVSPSEIKNRMGM 33 (142)
Q Consensus 11 f~~~d~~~~g~i~~~e~~~~l~~ 33 (142)
....|..+.++||.++++.++-.
T Consensus 75 L~~le~~rg~Y~TiSeLKT~vy~ 97 (148)
T PF12486_consen 75 LNQLEEQRGKYMTISELKTAVYQ 97 (148)
T ss_pred HHHHHHhcCCceeHHHHHHHHHH
Confidence 33445555555666666655533
No 253
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.98 E-value=81 Score=23.05 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHh
Q 032375 93 RGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRI 139 (142)
Q Consensus 93 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 139 (142)
+|+|+-.--+.-+. +-.+....+-.+++..|.+.+|.++-+||.-
T Consensus 457 ~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 45555433333222 2345666788999999999999999999863
No 254
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=34.68 E-value=71 Score=25.00 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=43.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHhcCCh---------HHHHHHHHHHhchhcCCCC---------------------
Q 032375 44 EVEVAIESLDKDGDGFLDLEDLVGLIEGASA---------EEKLKDLREAFGLYDFDNR--------------------- 93 (142)
Q Consensus 44 ~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~---------~~~~~~~~~~f~~~d~~~~--------------------- 93 (142)
-...++..+|...++++++.+|-........ .........+|..+|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~ 517 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKK 517 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccc
Confidence 3345666667788889998888765442111 1112235567888888887
Q ss_pred --CccCHHHHHHHHHH
Q 032375 94 --GFISPNDLKRMLAK 107 (142)
Q Consensus 94 --g~i~~~e~~~~l~~ 107 (142)
|.++.+|...+++.
T Consensus 518 s~~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 518 SFGVVTVDELVALLAL 533 (975)
T ss_pred ccCeeEHHHHHHHHHH
Confidence 99999999888773
No 255
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=34.31 E-value=91 Score=17.63 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q 032375 98 PNDLKRMLAKLGESKSIDECRMMID 122 (142)
Q Consensus 98 ~~e~~~~l~~~~~~~~~~~~~~~~~ 122 (142)
...+..+|+.++.....+.+..++.
T Consensus 69 ~~~Li~aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 69 YRTLIKTLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHH
Confidence 4667778887777666666655543
No 256
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=33.68 E-value=46 Score=19.35 Aligned_cols=11 Identities=18% Similarity=0.051 Sum_probs=4.1
Q ss_pred CccCHHHHHHH
Q 032375 94 GFISPNDLKRM 104 (142)
Q Consensus 94 g~i~~~e~~~~ 104 (142)
|.|+......+
T Consensus 84 g~i~l~~~l~~ 94 (117)
T PF08349_consen 84 GKIPLSVPLTL 94 (117)
T ss_pred CCccHHHHHHH
Confidence 33333333333
No 257
>COG5562 Phage envelope protein [General function prediction only]
Probab=33.63 E-value=27 Score=21.04 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=13.8
Q ss_pred HhcCCCCCccccHHHHHhhh
Q 032375 122 DRFDLNGDGVLSFEEFRIMM 141 (142)
Q Consensus 122 ~~~d~~~~g~i~~~ef~~~l 141 (142)
.....+..|..+|+||++.+
T Consensus 79 ~al~~~qsGqttF~ef~~~l 98 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSAL 98 (137)
T ss_pred HHHHHHhcCCccHHHHHHHH
Confidence 33444567888999988754
No 258
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=33.19 E-value=61 Score=15.33 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHhCCCCCHHHH
Q 032375 97 SPNDLKRMLAKLGESKSIDEC 117 (142)
Q Consensus 97 ~~~e~~~~l~~~~~~~~~~~~ 117 (142)
+.+++..+.+..|..++..++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 566777777777887776654
No 259
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=32.67 E-value=78 Score=17.17 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=12.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHH
Q 032375 100 DLKRMLAKLGESKSIDECRMM 120 (142)
Q Consensus 100 e~~~~l~~~~~~~~~~~~~~~ 120 (142)
|+..+|+.+|..+++++..-+
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL 41 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFL 41 (78)
T ss_dssp HHHHHHHHTT----HHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 566778888988888885444
No 260
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=32.01 E-value=1.2e+02 Score=18.13 Aligned_cols=25 Identities=4% Similarity=0.191 Sum_probs=9.9
Q ss_pred HHHHHhhhhCCCCCcHHHHHHHHHhh
Q 032375 27 IKNRMGMIVGGGDVLLNEVEVAIESL 52 (142)
Q Consensus 27 ~~~~l~~~~~~~~~~~~~~~~l~~~~ 52 (142)
|..+++.+. ...++.+.+..++...
T Consensus 39 l~~Il~mFl-~~eid~e~~y~l~~~~ 63 (122)
T PF06648_consen 39 LIKILKMFL-NDEIDVEDMYNLFGAV 63 (122)
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHhcc
Confidence 344444433 3334444444443333
No 261
>PF13592 HTH_33: Winged helix-turn helix
Probab=30.47 E-value=79 Score=15.76 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=22.2
Q ss_pred CccCHHHHHHHHHH-hCCCCCHHHHHHHHHhcC
Q 032375 94 GFISPNDLKRMLAK-LGESKSIDECRMMIDRFD 125 (142)
Q Consensus 94 g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d 125 (142)
+..|..++...+.. +|...+..-+..+++.++
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 45666777777765 577777777777777664
No 262
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=30.42 E-value=2e+02 Score=20.42 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=31.5
Q ss_pred HHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHH
Q 032375 27 IKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRM 104 (142)
Q Consensus 27 ~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~ 104 (142)
|...+.....|.......+..+++ .|.++-+|=+..+.........+.++..++.++ ||.+||..+
T Consensus 276 ~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 276 FHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred HHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 444444332255544433333332 355666666666655433333345555555553 455555544
No 263
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.28 E-value=1e+02 Score=17.01 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=22.7
Q ss_pred CCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHH
Q 032375 57 DGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 57 ~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
.|.++..+...+-.... ..+.....+..+ ...|.-.+..|..+|+.
T Consensus 32 ~gvlt~~~~~~I~~~~t---~~~k~~~Lld~L--~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 32 KDILTDSMAESIMAKPT---SFSQNVALLNLL--PKRGPRAFSAFCEALRE 77 (90)
T ss_pred cCCCCHHHHHHHHcCCC---cHHHHHHHHHHH--HHhChhHHHHHHHHHHh
Confidence 45666666555444322 223344444444 23455555556666654
No 264
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=29.67 E-value=22 Score=19.13 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=19.4
Q ss_pred CCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 92 NRGFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 92 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
.+|.=+..+|-.+|..+|..+-+..++-+++.+.
T Consensus 37 dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMt 70 (88)
T PF15144_consen 37 DSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMT 70 (88)
T ss_pred ccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 3444444456666666665555556666666654
No 265
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=29.65 E-value=1.7e+02 Score=19.24 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=9.1
Q ss_pred CCCccCHHHHHHHHHHh
Q 032375 92 NRGFISPNDLKRMLAKL 108 (142)
Q Consensus 92 ~~g~i~~~e~~~~l~~~ 108 (142)
+...|+++++.+++..+
T Consensus 129 g~~lISp~Di~~A~~~l 145 (223)
T PF04157_consen 129 GSELISPEDILRACKLL 145 (223)
T ss_dssp TSST--HHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHH
Confidence 34466666666666655
No 266
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=28.66 E-value=1.1e+02 Score=16.85 Aligned_cols=28 Identities=14% Similarity=0.096 Sum_probs=18.5
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHH
Q 032375 95 FISPNDLKRMLAKLGESKSIDECRMMID 122 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 122 (142)
.|+.++++.+..-....++++++..+..
T Consensus 2 ~i~~e~i~~la~La~l~l~~ee~~~~~~ 29 (95)
T PRK00034 2 AITREEVKHLAKLARLELSEEELEKFAG 29 (95)
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3667777777777777777766555543
No 267
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=28.63 E-value=24 Score=24.11 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=39.2
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhC
Q 032375 39 DVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLG 109 (142)
Q Consensus 39 ~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 109 (142)
.+++..+..||..+.+-...+|-++|..-.............+...|+.+--+=+--|+.+.++.++..+|
T Consensus 17 ~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFG 87 (321)
T KOG0148|consen 17 TVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFG 87 (321)
T ss_pred hhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhcccc
Confidence 34566677777777666666676776554433221222222344456555555555666666666665554
No 268
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=27.72 E-value=1.7e+02 Score=18.68 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=28.2
Q ss_pred cccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhc
Q 032375 21 KVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEG 71 (142)
Q Consensus 21 ~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~ 71 (142)
.|+..+++.-++.. .+..-++.+-.++-.. ..|.++..+|..-+..
T Consensus 3 IIdFnelKNKvkdk--DiDKFE~YiY~ly~~~---a~Gklsm~dFsk~I~~ 48 (186)
T PF12983_consen 3 IIDFNELKNKVKDK--DIDKFEEYIYSLYYDV---AEGKLSMADFSKKIME 48 (186)
T ss_pred eecHHHHhhhcccc--cHHHHHHHHHHHHHHH---hcCcccHHHHHHHHHH
Confidence 45666666655544 4444455555554444 4688999999877663
No 269
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=27.45 E-value=96 Score=15.75 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHhCCCCCHHHHHHH
Q 032375 96 ISPNDLKRMLAKLGESKSIDECRMM 120 (142)
Q Consensus 96 i~~~e~~~~l~~~~~~~~~~~~~~~ 120 (142)
.+.+++..+.+..|..++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4478888888889999999888764
No 270
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=27.31 E-value=2.6e+02 Score=20.65 Aligned_cols=69 Identities=6% Similarity=-0.035 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHh
Q 032375 39 DVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 39 ~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 108 (142)
.++..+....++..--. ...|.|..|...+.........-+...+=..+|...+++|+.=||--+-+-+
T Consensus 171 riTKadA~~FWr~~fg~-k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLF 239 (563)
T KOG1785|consen 171 RITKADAAEFWRKHFGK-KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLF 239 (563)
T ss_pred eeccccHHHHHHHhcCC-cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhh
Confidence 35566666677666433 3579999999998866444333344444556788899999988876554443
No 271
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=27.26 E-value=93 Score=23.05 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=17.4
Q ss_pred hHHHHHHHHhcCCCCCcccHHHHHHHHhhh
Q 032375 5 REYERVFVYFDENGDGKVSPSEIKNRMGMI 34 (142)
Q Consensus 5 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 34 (142)
..+..+| .+.....+.-+.+||.+.++..
T Consensus 289 ~~i~~ly-~~~~~~~~~pt~eEF~e~v~~~ 317 (445)
T PF13608_consen 289 DEIEHLY-MLCKKHGKLPTEEEFLEYVEEV 317 (445)
T ss_pred HHHHHHH-HHHHHhCCCCCHHHHHHHHHhc
Confidence 3444555 5544455667777777777655
No 272
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=27.11 E-value=64 Score=19.03 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=15.6
Q ss_pred CCCCCccCHHHHHHHHHHh
Q 032375 90 FDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 90 ~~~~g~i~~~e~~~~l~~~ 108 (142)
.|-+|.|+.+++.+++..+
T Consensus 5 iDtSGSis~~~l~~fl~ev 23 (126)
T PF09967_consen 5 IDTSGSISDEELRRFLSEV 23 (126)
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4678999999999988764
No 273
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=27.00 E-value=66 Score=13.72 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=6.9
Q ss_pred CCccCHHHHHHH
Q 032375 93 RGFISPNDLKRM 104 (142)
Q Consensus 93 ~g~i~~~e~~~~ 104 (142)
+|.||.+||...
T Consensus 14 ~G~IseeEy~~~ 25 (31)
T PF09851_consen 14 KGEISEEEYEQK 25 (31)
T ss_pred cCCCCHHHHHHH
Confidence 356666666544
No 274
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=26.92 E-value=92 Score=25.89 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=34.5
Q ss_pred cCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Q 032375 89 DFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNG 128 (142)
Q Consensus 89 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 128 (142)
|.--.|.||......++..+|...+...+..+|..++.+.
T Consensus 1131 DvVMRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~~ 1170 (1301)
T PF05788_consen 1131 DVVMRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLES 1170 (1301)
T ss_pred hhhhhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhcccH
Confidence 3445699999999999999999999999999999887663
No 275
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=26.57 E-value=1.1e+02 Score=16.48 Aligned_cols=34 Identities=3% Similarity=0.050 Sum_probs=15.5
Q ss_pred hcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Q 032375 88 YDFDNRGFISPNDLKRMLAKLGESKSIDECRMMI 121 (142)
Q Consensus 88 ~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 121 (142)
...+.+|.|+.+-+..+=+--....+.+.+...+
T Consensus 27 ~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al 60 (77)
T cd08033 27 VRRNKEGYVPIKLIASFKKVKALTRDWRVVAAAL 60 (77)
T ss_pred hccCCCCcEehHHHhcchHHHHHcCCHHHHHHHH
Confidence 3345566666654444433333333433333333
No 276
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=26.42 E-value=2.3e+02 Score=22.70 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=39.8
Q ss_pred HHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCCCccccHHHHHhh
Q 032375 80 DLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNGDGVLSFEEFRIM 140 (142)
Q Consensus 80 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 140 (142)
....+|+.....+.-.+..+++..+ +.+++++..+..++...++.|+...|...
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~ 458 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEW 458 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHH
Confidence 3466788877777777777766655 46778888888888776666999888764
No 277
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=26.07 E-value=1.3e+02 Score=21.45 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=46.6
Q ss_pred cCCCCCcccHHHHHHHHhhhhCCCCCc----------HHHHHHHHHhhcCC-CCCcccHHHHH-HHHhcC-ChHHHHHHH
Q 032375 15 DENGDGKVSPSEIKNRMGMIVGGGDVL----------LNEVEVAIESLDKD-GDGFLDLEDLV-GLIEGA-SAEEKLKDL 81 (142)
Q Consensus 15 d~~~~g~i~~~e~~~~l~~~~~~~~~~----------~~~~~~l~~~~d~~-~~g~v~~~ef~-~~~~~~-~~~~~~~~~ 81 (142)
+.++.+.++..+..+.|..+ |+... ...+..++...... ..|.|--..=. .-...+ .......++
T Consensus 135 ~~~~~~~lp~~eR~~lLe~l--g~~~v~~~~~~~~~d~~~l~~~l~~~~~~G~EGVVlK~~~~~~~~~Ky~t~~~~~~di 212 (342)
T cd07894 135 KKNTGRPLPVEERRELLEKY--GLPTVRLFGEFTADEIEELKEIIRELDKEGREGVVLKDPDMRVPPLKYTTSYSNCSDI 212 (342)
T ss_pred EcCCCCCCCHHHHHHHHHhc--CCCCcceEEEEecCCHHHHHHHHHHHHHCCCceEEEeccccccCcceeecCCCCcHHH
Confidence 33445678888888888887 65422 24566666665443 33332211000 000000 122223456
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHhCCCCC
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKLGESKS 113 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~ 113 (142)
..+|..+-.-+.++....=++..+...-.+.+
T Consensus 213 ~~~~~~~~d~~~~~~~~Ri~R~~~~~~E~~~~ 244 (342)
T cd07894 213 RYAFRYPFDLGRDFFFSRIVREGFQSVELGES 244 (342)
T ss_pred HHHhhhccccCchHHHHHHHHHHHHHHHhCCc
Confidence 66666554455555555555555544433333
No 278
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=25.84 E-value=1.2e+02 Score=16.14 Aligned_cols=39 Identities=10% Similarity=0.234 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhchhcCCCCC-ccCHHHHHHHHHH
Q 032375 62 LEDLVGLIEGASAEEKLKDLREAFGLYDFDNRG-FISPNDLKRMLAK 107 (142)
Q Consensus 62 ~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g-~i~~~e~~~~l~~ 107 (142)
..+|+..+. .+.+.++...-..++++ .|+.+++..++.+
T Consensus 28 ~~eyl~iFV-------~EAv~Ra~~~a~~e~~~~~le~e~LEki~pq 67 (72)
T PF09415_consen 28 SAEYLRIFV-------REAVARAAEQAEAEGDEGFLEVEHLEKILPQ 67 (72)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHTT-SSEE-HHHHHHHCHC
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 445665555 23344443322234444 4888888877654
No 279
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=25.76 E-value=1.3e+02 Score=16.82 Aligned_cols=80 Identities=18% Similarity=0.148 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHH
Q 032375 25 SEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRM 104 (142)
Q Consensus 25 ~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~ 104 (142)
.+.....+.. ...++..-++.+.+......-..--.+++...+... -......+-......+.-+|+.+++..+
T Consensus 7 ~~~r~~~~~~--~~~Lp~apv~Ri~r~~~~~Rvs~~A~~~l~~~~e~~----~~~i~~~A~~~A~ha~RKTV~~~DI~la 80 (91)
T COG2036 7 KEIRRYQRST--DLLLPKAPVRRILRKAGAERVSSSAIEELQEALEEY----LEEIAEDAVELAEHAKRKTVKAEDIKLA 80 (91)
T ss_pred HHHHhhhhhh--hhhcCchHHHHHHHHHhHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCeecHHHHHHH
Confidence 4445555554 555555556666665544321111233444444321 1223344455556678889999999999
Q ss_pred HHHhCC
Q 032375 105 LAKLGE 110 (142)
Q Consensus 105 l~~~~~ 110 (142)
+...|.
T Consensus 81 ~~~~~~ 86 (91)
T COG2036 81 LKRLGR 86 (91)
T ss_pred HHHhcc
Confidence 887764
No 280
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.74 E-value=98 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHH
Q 032375 6 EYERVFVYFDENGDGKVSPSEIKNR 30 (142)
Q Consensus 6 ~~~~~f~~~d~~~~g~i~~~e~~~~ 30 (142)
-+-++|...|.+.+|.++.+||.-+
T Consensus 478 vlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 478 VLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred HHHhhhhhhcCCcccCcCHHHHHHH
Confidence 3456677777777777777777543
No 281
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=25.54 E-value=1.5e+02 Score=17.21 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=28.0
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 95 FISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
.||.+.+..+|...|.......+..+...+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~ 46 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999999988888888888885
No 282
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=25.46 E-value=1.5e+02 Score=19.74 Aligned_cols=47 Identities=15% Similarity=0.165 Sum_probs=28.2
Q ss_pred CCCCccCHHHHHHHHHHh-----------CCCCCHHHHHHHHHhcCCCCCccccHHHH
Q 032375 91 DNRGFISPNDLKRMLAKL-----------GESKSIDECRMMIDRFDLNGDGVLSFEEF 137 (142)
Q Consensus 91 ~~~g~i~~~e~~~~l~~~-----------~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 137 (142)
..+++++.+|.+.+..-. +...+..++......+-..++++++|-|.
T Consensus 191 SRN~yL~~Eerkia~nlyr~Lk~a~~~i~~G~~~~~elid~~~q~v~~~~f~~Dyvei 248 (283)
T KOG3042|consen 191 SRNKYLCPEERKIAENLYRGLKAAENAIRGGRLSRSELIDTVTQYVDSHDFKIDYVEI 248 (283)
T ss_pred ccCcccChHHHHhhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhccCccceEEE
Confidence 466788888766543221 44666666655555554466777766543
No 283
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=25.37 E-value=14 Score=15.89 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=7.4
Q ss_pred HHHhcCCCCCcccHH
Q 032375 11 FVYFDENGDGKVSPS 25 (142)
Q Consensus 11 f~~~d~~~~g~i~~~ 25 (142)
...-|.+++..|+.+
T Consensus 5 L~qEDTDgn~qITIe 19 (30)
T PF07492_consen 5 LEQEDTDGNFQITIE 19 (30)
T ss_pred hhccccCCCcEEEEe
Confidence 334455555555543
No 284
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=25.35 E-value=1.5e+02 Score=21.28 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=50.8
Q ss_pred HhcCCCCCcccHHHHHHHHhhhhCCCCC-------c----HHHHHHHHHhhcCCCCCcccHHHHHHHHh--cC-ChHHHH
Q 032375 13 YFDENGDGKVSPSEIKNRMGMIVGGGDV-------L----LNEVEVAIESLDKDGDGFLDLEDLVGLIE--GA-SAEEKL 78 (142)
Q Consensus 13 ~~d~~~~g~i~~~e~~~~l~~~~~~~~~-------~----~~~~~~l~~~~d~~~~g~v~~~ef~~~~~--~~-~~~~~~ 78 (142)
..+.+..+.++.++=.+++... |+.. + .+++..++..+++.+--.|-+.+=-..+. .+ ......
T Consensus 173 ire~~tgr~Lp~eer~~l~ekY--gl~~V~~fg~~~~~e~~eei~eIve~L~keGREGVV~Kdpdm~~~plKYtTsyan~ 250 (382)
T COG1423 173 IREKNTGRPLPVEERLELAEKY--GLPHVEIFGEFPADEAGEEIYEIVERLNKEGREGVVMKDPDMRVPPLKYTTSYANI 250 (382)
T ss_pred EEecCCCCCCCHHHHHHHHHHc--CCCceEEeeeechhHhHHHHHHHHHHHhhcCCcceEecCcccccCcceeecccccH
Confidence 3345667789999888888877 6541 1 25678888888776422222221111110 01 223334
Q ss_pred HHHHHHhchhcCCCCCccCHHHHHHHHHHh
Q 032375 79 KDLREAFGLYDFDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 79 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~ 108 (142)
.+++.+|+.+-.-+.+++...=++..+...
T Consensus 251 ~Dik~afr~~~elgr~f~~sRiiRe~F~~~ 280 (382)
T COG1423 251 EDIKYAFRFFFELGRDFFFSRIIREGFQSY 280 (382)
T ss_pred HHHHHHHhhhhhcCchHHHHHHHHHHHHHH
Confidence 556666666555555555555555555444
No 285
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=25.32 E-value=1.2e+02 Score=16.09 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=9.7
Q ss_pred cccHHHHHHHHhcC
Q 032375 59 FLDLEDLVGLIEGA 72 (142)
Q Consensus 59 ~v~~~ef~~~~~~~ 72 (142)
..+|++|...+...
T Consensus 26 ~~~W~~~~~~~~~~ 39 (96)
T PF03732_consen 26 FITWEEFKDAFRKR 39 (96)
T ss_pred CCCHHHHHHHHHHH
Confidence 46788888777643
No 286
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=25.28 E-value=1.4e+02 Score=17.32 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=9.2
Q ss_pred CCcccHHHHHHHHhhh
Q 032375 19 DGKVSPSEIKNRMGMI 34 (142)
Q Consensus 19 ~g~i~~~e~~~~l~~~ 34 (142)
+..|+..|+...+..+
T Consensus 10 ~eiIt~sel~~~~~~~ 25 (118)
T PF09312_consen 10 DEIITQSELEQRLAQL 25 (118)
T ss_dssp SSEEEHHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHHH
Confidence 4456666666655443
No 287
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=25.22 E-value=1e+02 Score=15.21 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=20.0
Q ss_pred CCCcccHHHHHHHHhhhhCCCCCcHHHHHHHH
Q 032375 18 GDGKVSPSEIKNRMGMIVGGGDVLLNEVEVAI 49 (142)
Q Consensus 18 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~ 49 (142)
..|.|+..||..-+... -..-+..++..++
T Consensus 20 a~GrL~~~Ef~~R~~~a--~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 20 AEGRLSLDEFDERLDAA--YAARTRGELDALF 49 (53)
T ss_pred HCCCCCHHHHHHHHHHH--HhcCcHHHHHHHH
Confidence 57899999998777666 4444555555544
No 288
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=25.12 E-value=1.7e+02 Score=17.86 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=28.0
Q ss_pred CCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 032375 91 DNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDL 126 (142)
Q Consensus 91 ~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 126 (142)
..+...|.+|+.+.|+..|..++..-+...++.++.
T Consensus 12 ~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 12 TEEKISTQEELVALLKAEGIEVTQATVSRDLRELGA 47 (146)
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 345677889999999888988888888777776643
No 289
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=24.94 E-value=1.5e+02 Score=17.09 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=27.8
Q ss_pred ccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 95 FISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
.||.+.+..+|...|..+....+..+...+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999999888888888888875
No 290
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.92 E-value=1.7e+02 Score=17.63 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=25.1
Q ss_pred HHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Q 032375 79 KDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNG 128 (142)
Q Consensus 79 ~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 128 (142)
+.+..+-+.+...+-..-+.++=..+|+.-| ++++||+.++.......
T Consensus 4 ~li~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 4 DLIEQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred HHHHHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 3445554555444444445555566666654 67788888777765433
No 291
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=24.85 E-value=2e+02 Score=18.96 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=30.9
Q ss_pred CCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 032375 90 FDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDL 126 (142)
Q Consensus 90 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 126 (142)
.|.+|....+++...++..+..++.+.+..++..-++
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 6788999999999999998888998888888766543
No 292
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=24.78 E-value=1.9e+02 Score=18.39 Aligned_cols=60 Identities=10% Similarity=0.044 Sum_probs=29.1
Q ss_pred CCcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcC--ChHHHHHHHHHHhchh
Q 032375 19 DGKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGA--SAEEKLKDLREAFGLY 88 (142)
Q Consensus 19 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~--~~~~~~~~~~~~f~~~ 88 (142)
....+.+....+.-.+ +..=...+.++-..+++.++|+..+... ...-..+.+..+|...
T Consensus 124 ~~~~~~d~v~~l~~sl----------imLnTdlHn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I 185 (190)
T PF01369_consen 124 TPFKSPDTVYILAYSL----------IMLNTDLHNPNIKKKMTKEDFIKNTRGIDDGKDIPEEFLESIYDSI 185 (190)
T ss_dssp CSSSSHHHHHHHHHHH----------HHHHHHHH-TTSSSS--HHHHHHHTTTTBTTBS--HHHHHHHHHHH
T ss_pred cccccHhHHHHHHHHH----------HHHhHHHHhhccccCCcHHHHHHHhhcccCCCCCCHHHHHHHHHHH
Confidence 4566666555444333 1111223344444568888888888753 2223445566666544
No 293
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=24.46 E-value=3e+02 Score=20.37 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=56.4
Q ss_pred CcccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCC---cc
Q 032375 20 GKVSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRG---FI 96 (142)
Q Consensus 20 g~i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g---~i 96 (142)
..+....|+++|... .-..+.-+...+-..+|...++.|+.-||=.+-.- ......+.+-++.+...+-| .+
T Consensus 189 ~ivPW~~F~q~L~~~--Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRL---FqPw~tllkNWq~LavtHPGYmAFL 263 (563)
T KOG1785|consen 189 TIVPWKTFRQALHKV--HPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRL---FQPWKTLLKNWQTLAVTHPGYMAFL 263 (563)
T ss_pred ccccHHHHHHHHHhc--CCCcchhHHHHhhceeccccccceeeehhhhHHHh---hccHHHHHHhhhhhhccCCceeEEe
Confidence 467888999998887 54455567777777888888888886665443321 11234455556666666666 56
Q ss_pred CHHHHHHHHHHh
Q 032375 97 SPNDLKRMLAKL 108 (142)
Q Consensus 97 ~~~e~~~~l~~~ 108 (142)
|.+|++.-|..+
T Consensus 264 TYDEVk~RLqk~ 275 (563)
T KOG1785|consen 264 TYDEVKARLQKY 275 (563)
T ss_pred eHHHHHHHHHHH
Confidence 888888887765
No 294
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=24.07 E-value=1.9e+02 Score=19.30 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=28.4
Q ss_pred cHHHHHHHHhhhhC--CCCCcHHHHHHHHHhhcCCCCCcccHHHHHHHHh
Q 032375 23 SPSEIKNRMGMIVG--GGDVLLNEVEVAIESLDKDGDGFLDLEDLVGLIE 70 (142)
Q Consensus 23 ~~~e~~~~l~~~~~--~~~~~~~~~~~l~~~~d~~~~g~v~~~ef~~~~~ 70 (142)
+.++++.++..... ++.+++.+++.+...+..-.+-.+++.+|...+.
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~ 222 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLN 222 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55566555543311 5667777777777666655555566666666554
No 295
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=24.07 E-value=1.4e+02 Score=16.81 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=4.5
Q ss_pred cccHHHHHHHH
Q 032375 21 KVSPSEIKNRM 31 (142)
Q Consensus 21 ~i~~~e~~~~l 31 (142)
.|+.+||...|
T Consensus 39 ~i~~EeF~~~L 49 (92)
T smart00549 39 TITAEEFTSRL 49 (92)
T ss_pred CCCHHHHHHHH
Confidence 34444443333
No 296
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.00 E-value=1.3e+02 Score=18.98 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=29.1
Q ss_pred ccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCC----CCCcccHHHHHHHHh
Q 032375 22 VSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKD----GDGFLDLEDLVGLIE 70 (142)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~----~~g~v~~~ef~~~~~ 70 (142)
|+.+||.+.|+... ..+++++.++++..++.. .....+-+|-...+.
T Consensus 1 M~k~efL~~L~~~L--~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG 51 (181)
T PF08006_consen 1 MNKNEFLNELEKYL--KKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELG 51 (181)
T ss_pred CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcC
Confidence 46778888887773 357777777777766432 112245566665554
No 297
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=23.79 E-value=67 Score=14.36 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=10.6
Q ss_pred ccCHHHHHHHHHHhCCCC
Q 032375 95 FISPNDLKRMLAKLGESK 112 (142)
Q Consensus 95 ~i~~~e~~~~l~~~~~~~ 112 (142)
.++..+++.+|...|+..
T Consensus 3 sltV~~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEF 20 (35)
T ss_dssp T--SHHHHHHHHHHT---
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467788888888876543
No 298
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=23.73 E-value=1.2e+02 Score=15.59 Aligned_cols=9 Identities=0% Similarity=-0.016 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 032375 114 IDECRMMID 122 (142)
Q Consensus 114 ~~~~~~~~~ 122 (142)
.+.+..++.
T Consensus 32 ~evI~~ai~ 40 (73)
T TIGR01446 32 PELIKEALK 40 (73)
T ss_pred HHHHHHHHH
Confidence 333333333
No 299
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=23.19 E-value=1e+02 Score=14.97 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=15.7
Q ss_pred hcCCCCCcccHHHHHHHHhhh
Q 032375 14 FDENGDGKVSPSEIKNRMGMI 34 (142)
Q Consensus 14 ~d~~~~g~i~~~e~~~~l~~~ 34 (142)
+..+++..++.+++++.|..+
T Consensus 24 YnShNT~rL~ve~~k~lLl~L 44 (48)
T PF08485_consen 24 YNSHNTERLDVEEMKELLLKL 44 (48)
T ss_pred cCCCCccccCHHHHHHHHHhC
Confidence 445667788888888888765
No 300
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=23.12 E-value=1.5e+02 Score=16.61 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHH
Q 032375 57 DGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAK 107 (142)
Q Consensus 57 ~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~ 107 (142)
.|.++..+.-.+-.... +.+....+...+ ...|.-.+.-|.++|..
T Consensus 33 ~gIlT~~~~e~I~a~~T---~~~k~~~LLdiL--p~RG~~AF~~F~~aL~e 78 (94)
T cd08327 33 EGILTESHVEEIESQTT---SRRKTMKLLDIL--PSRGPKAFHAFLDSLEE 78 (94)
T ss_pred CCCCCHHHHHHHHccCC---hHHHHHHHHHHH--HhhChhHHHHHHHHHHH
Confidence 45666666655554322 233344444443 34455566666666654
No 301
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=23.03 E-value=1.4e+02 Score=16.05 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Q 032375 98 PNDLKRMLAKLGESKSIDECRMMIDRFDLNG 128 (142)
Q Consensus 98 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 128 (142)
...+...+.++|.+-++..+..++.......
T Consensus 5 ~h~l~~LF~QLGL~~~~~~I~~FI~~H~L~~ 35 (74)
T PF10982_consen 5 QHTLSNLFAQLGLDSSDEAIEAFIETHQLPA 35 (74)
T ss_dssp -THHHHHHHHHTS---HHHHHHHHHHS---T
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHhCCCCC
Confidence 4467788888898888888988888766443
No 302
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=23.01 E-value=84 Score=17.12 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=16.5
Q ss_pred CCCCCHHHHHHHHHhcCCCCCccccHHHHHhh
Q 032375 109 GESKSIDECRMMIDRFDLNGDGVLSFEEFRIM 140 (142)
Q Consensus 109 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 140 (142)
|..+.+...+.+-+.+.......|+++|++.+
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~Y 74 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVY 74 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 33444444455544444444445777776543
No 303
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=22.79 E-value=1.4e+02 Score=16.11 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHHhcCChHHHHHHHHHHhchhcCCCCCccCHHHHHHHHHHhC
Q 032375 56 GDGFLDLEDLVGLIEGASAEEKLKDLREAFGLYDFDNRGFISPNDLKRMLAKLG 109 (142)
Q Consensus 56 ~~g~v~~~ef~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 109 (142)
+.|.|+-+++-.+.... ...+..+.++.... ..|.....-|.++|+...
T Consensus 26 ~~~Vit~e~~~~I~a~~---T~~~kar~Lld~l~--~kG~~A~~~F~~~L~e~~ 74 (82)
T cd08330 26 GKKVITQEQYSEVRAEK---TNQEKMRKLFSFVR--SWGASCKDIFYQILREEE 74 (82)
T ss_pred HCCCCCHHHHHHHHcCC---CcHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhC
Confidence 34667777776666543 23444566666653 356666777777776543
No 304
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=22.73 E-value=1.6e+02 Score=16.70 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=30.9
Q ss_pred ccHHHHHHHHhhhhCCCCCcHHHHHHHHHhhcCCCC---CcccHHHHHHHHhc
Q 032375 22 VSPSEIKNRMGMIVGGGDVLLNEVEVAIESLDKDGD---GFLDLEDLVGLIEG 71 (142)
Q Consensus 22 i~~~e~~~~l~~~~~~~~~~~~~~~~l~~~~d~~~~---g~v~~~ef~~~~~~ 71 (142)
+...+..-+|..+ ...++++++..+...+-..+. ..++...++..+..
T Consensus 20 vP~~Dy~PLlALL--~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~ 70 (96)
T PF11829_consen 20 VPPTDYVPLLALL--RRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTD 70 (96)
T ss_dssp B-HHHHHHHHHHH--TTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCS
T ss_pred CCCCccHHHHHHh--cccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHc
Confidence 6666777677777 777899999888887744333 35566666655543
No 305
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=22.64 E-value=94 Score=13.97 Aligned_cols=16 Identities=25% Similarity=0.601 Sum_probs=7.4
Q ss_pred HHHHHHhchhcCCCCC
Q 032375 79 KDLREAFGLYDFDNRG 94 (142)
Q Consensus 79 ~~~~~~f~~~d~~~~g 94 (142)
+.+...+..+..+.+|
T Consensus 16 edL~~L~~~Lt~dkdG 31 (35)
T PF13099_consen 16 EDLKDLVDILTHDKDG 31 (35)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 3444455544444444
No 306
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=22.58 E-value=1.1e+02 Score=14.89 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=11.7
Q ss_pred HHHhcCCCCCcccHHHHHHHHh
Q 032375 11 FVYFDENGDGKVSPSEIKNRMG 32 (142)
Q Consensus 11 f~~~d~~~~g~i~~~e~~~~l~ 32 (142)
|......+++.++.+|+...+.
T Consensus 12 ~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 12 PDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHTTS-BEHHHHHHTST
T ss_pred HHHHHHcCCCCCCHHHHHHHcC
Confidence 4444444456777777766554
No 307
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=22.33 E-value=2e+02 Score=20.88 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=52.5
Q ss_pred HHHhcCCCCCcccHHHHHHHHhhhhCCCCC-------cHH----HHHHHHHhhcCCC-CCcccHHH-HHHHHhcC-ChHH
Q 032375 11 FVYFDENGDGKVSPSEIKNRMGMIVGGGDV-------LLN----EVEVAIESLDKDG-DGFLDLED-LVGLIEGA-SAEE 76 (142)
Q Consensus 11 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~-------~~~----~~~~l~~~~d~~~-~g~v~~~e-f~~~~~~~-~~~~ 76 (142)
|..+|.+....++.++....+..+ |+.. +.. .+..++..++..+ .|.|=-+. -..-..++ ....
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~y--glp~Vpvlg~~~~~~~~~~~~eii~~L~~~gREGVVlK~~~~~~~~~KYtT~~~ 240 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKY--GLPHVEILGVYTADEAVEEIYEIIERLNKEGREGVVMKDPEMRVKPLKYTTSYA 240 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHC--CCCccceeeEEcHHHHHHHHHHHHHHhhhcCcceEEEcCccccCCcceeecCcc
Confidence 333455667889999999999888 7653 222 4456666666542 34332111 11000011 2223
Q ss_pred HHHHHHHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHH
Q 032375 77 KLKDLREAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDE 116 (142)
Q Consensus 77 ~~~~~~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~ 116 (142)
...++..+|..+-.-+.++....=++..+...-.+.+.++
T Consensus 241 n~~Di~~~~~~~~d~g~df~~sRi~Re~f~~~E~~~~~~e 280 (374)
T TIGR01209 241 NINDIKYAARYFFELGRDFFFSRILREAFQSYEFGEKGEE 280 (374)
T ss_pred ChHHHHHHHhhccccCchHHHHHHHHHHHHHHHhCCchHH
Confidence 3445666666554445555555555555544433344333
No 308
>PHA02771 hypothetical protein; Provisional
Probab=21.93 E-value=1.6e+02 Score=16.44 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=5.7
Q ss_pred CCHHHHHHHHHhc
Q 032375 112 KSIDECRMMIDRF 124 (142)
Q Consensus 112 ~~~~~~~~~~~~~ 124 (142)
++..+.+.+++..
T Consensus 32 ite~ey~ELi~n~ 44 (90)
T PHA02771 32 VSYNQFEEIIKDG 44 (90)
T ss_pred ecHHHHHHHHcCC
Confidence 3444444444443
No 309
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=21.92 E-value=1.4e+02 Score=15.72 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=21.7
Q ss_pred CccCHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 032375 94 GFISPNDLKRMLAKLGESKSIDECRMMIDRFD 125 (142)
Q Consensus 94 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 125 (142)
..-+.+|+...|...|+..+..-+..-++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 35688999999999999999888877776653
No 310
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=21.66 E-value=3.4e+02 Score=20.88 Aligned_cols=47 Identities=15% Similarity=0.331 Sum_probs=36.2
Q ss_pred HHHhchhcCCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCC
Q 032375 82 REAFGLYDFDNRGFISPNDLKRMLAKLGESKSIDECRMMIDRFDLNG 128 (142)
Q Consensus 82 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 128 (142)
..+....+..+.|.++.+|..++|..+...-..-.+..++++...|.
T Consensus 458 ~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~nd 504 (548)
T PF02459_consen 458 RDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALND 504 (548)
T ss_pred HHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcch
Confidence 33445567788889999999999999977766667788888776654
No 311
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=21.63 E-value=1.3e+02 Score=21.11 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=34.5
Q ss_pred HHHHHhchhcCCCCCccCHHHHHHHHHH-hCCCCCHHHHHHHHHhcC
Q 032375 80 DLREAFGLYDFDNRGFISPNDLKRMLAK-LGESKSIDECRMMIDRFD 125 (142)
Q Consensus 80 ~~~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d 125 (142)
.+..-..+||++++-.++-+.++.++.. ++...++..++..|..+.
T Consensus 80 ~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG 126 (335)
T KOG0113|consen 80 KLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYG 126 (335)
T ss_pred HHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcC
Confidence 3666678888888877777878777654 677778888888777764
No 312
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=21.49 E-value=2.3e+02 Score=18.04 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=26.6
Q ss_pred hhcCCCCCccCHHHHHHHHHHh--CCCCCHHHHHHHHHhcC
Q 032375 87 LYDFDNRGFISPNDLKRMLAKL--GESKSIDECRMMIDRFD 125 (142)
Q Consensus 87 ~~d~~~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~d 125 (142)
.+.++....+|.++|.+.++.. |..++.+.+..++....
T Consensus 141 lHn~~~~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~ 181 (185)
T cd00171 141 LHNPNVKKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIK 181 (185)
T ss_pred hcCcccCCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Confidence 3445556678888888887765 34677777777776554
No 313
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=21.27 E-value=1.1e+02 Score=20.04 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=19.2
Q ss_pred hchhcCCCCCccCHHHHHHHHHHh
Q 032375 85 FGLYDFDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 85 f~~~d~~~~g~i~~~e~~~~l~~~ 108 (142)
..-+|.+++|.++.+|+..+....
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHHH
Confidence 336789999999999998887654
No 314
>PF14164 YqzH: YqzH-like protein
Probab=21.12 E-value=1.4e+02 Score=15.49 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=23.1
Q ss_pred HHHHHHHhchhcCC-CCCccCHHHHHHHHHHh
Q 032375 78 LKDLREAFGLYDFD-NRGFISPNDLKRMLAKL 108 (142)
Q Consensus 78 ~~~~~~~f~~~d~~-~~g~i~~~e~~~~l~~~ 108 (142)
...+..+|+.|..+ ..-.++..|++.+...+
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 34567788888777 67788888888777664
No 315
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=20.87 E-value=1.4e+02 Score=15.20 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=15.7
Q ss_pred ccHHHHHHHHh-hhhCCCCCcHHHHHHHHHhhcCC
Q 032375 22 VSPSEIKNRMG-MIVGGGDVLLNEVEVAIESLDKD 55 (142)
Q Consensus 22 i~~~e~~~~l~-~~~~~~~~~~~~~~~l~~~~d~~ 55 (142)
++.+++.+.+. .. ..+++..++......+.+|
T Consensus 4 ~~~~~v~~~l~t~~--~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 4 LSVEEVLKRLNTSS--SQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp SSHHHHHHHHTTBT--SSBBTHHHHHHHHHHHSSS
T ss_pred CCHHHHHHHHCcCC--CCCCCHHHHHHHHHhcccc
Confidence 34445555554 22 4445555555555555444
No 316
>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.
Probab=20.80 E-value=68 Score=19.69 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=7.6
Q ss_pred CCccCHHHHHHH
Q 032375 93 RGFISPNDLKRM 104 (142)
Q Consensus 93 ~g~i~~~e~~~~ 104 (142)
.|.||++||..+
T Consensus 25 tG~iTPeEFV~A 36 (145)
T PF03986_consen 25 TGVITPEEFVAA 36 (145)
T ss_dssp HS---HHHHHHH
T ss_pred cceeCHHHHHHh
Confidence 499999999877
No 317
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=20.69 E-value=58 Score=16.86 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=7.3
Q ss_pred CccccHHHHHhhh
Q 032375 129 DGVLSFEEFRIMM 141 (142)
Q Consensus 129 ~g~i~~~ef~~~l 141 (142)
.|.|+++.|++..
T Consensus 37 ~g~I~~d~~lK~v 49 (65)
T PF09454_consen 37 RGSIDLDTFLKQV 49 (65)
T ss_dssp TTSS-HHHHHHHH
T ss_pred cCCCCHHHHHHHH
Confidence 4567777776643
No 318
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.61 E-value=2.4e+02 Score=20.45 Aligned_cols=11 Identities=36% Similarity=0.510 Sum_probs=5.6
Q ss_pred ccHHHHHHHHh
Q 032375 60 LDLEDLVGLIE 70 (142)
Q Consensus 60 v~~~ef~~~~~ 70 (142)
|+++++...+.
T Consensus 8 ~~LeeLe~kLa 18 (379)
T PF11593_consen 8 LKLEELEEKLA 18 (379)
T ss_pred CcHHHHHHHHh
Confidence 45555555444
No 319
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.60 E-value=2.1e+02 Score=17.17 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=6.2
Q ss_pred CccCHHHHHHHH
Q 032375 94 GFISPNDLKRML 105 (142)
Q Consensus 94 g~i~~~e~~~~l 105 (142)
|.||.+|-.++|
T Consensus 54 ~~iTlqEa~qIL 65 (132)
T KOG3442|consen 54 GKITLQEAQQIL 65 (132)
T ss_pred ccccHHHHhhHh
Confidence 445555555554
No 320
>PF14178 YppF: YppF-like protein
Probab=20.56 E-value=1.2e+02 Score=15.51 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=10.6
Q ss_pred CccCHHHHHHHHHHh
Q 032375 94 GFISPNDLKRMLAKL 108 (142)
Q Consensus 94 g~i~~~e~~~~l~~~ 108 (142)
|.|+..|++.+++.+
T Consensus 35 gei~i~eYR~lvreL 49 (60)
T PF14178_consen 35 GEISINEYRNLVREL 49 (60)
T ss_pred CcccHHHHHHHHHHH
Confidence 677777777776664
No 321
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.28 E-value=2.6e+02 Score=18.16 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=9.9
Q ss_pred hhcCCCCCccCHHHHHHHH
Q 032375 87 LYDFDNRGFISPNDLKRML 105 (142)
Q Consensus 87 ~~d~~~~g~i~~~e~~~~l 105 (142)
.|..|..|.|+...+..+.
T Consensus 127 af~~dk~G~l~~~rIl~Lr 145 (195)
T PF11363_consen 127 AFQVDKEGNLNTSRILGLR 145 (195)
T ss_pred HHhcCCCCCcCHHHHHHHH
Confidence 3444556666665554443
No 322
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=20.06 E-value=56 Score=19.84 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=11.3
Q ss_pred CCCCCccCHHHHHHHHHHh
Q 032375 90 FDNRGFISPNDLKRMLAKL 108 (142)
Q Consensus 90 ~~~~g~i~~~e~~~~l~~~ 108 (142)
.+.+..|+.+.+...|...
T Consensus 36 v~~d~~iD~~~L~~yL~g~ 54 (140)
T PF13075_consen 36 VNDDQSIDFERLAPYLGGI 54 (140)
T ss_pred EcCCceecHHHHhhhcCCC
Confidence 3556666666666665544
No 323
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=20.05 E-value=1.4e+02 Score=17.14 Aligned_cols=9 Identities=0% Similarity=0.302 Sum_probs=3.3
Q ss_pred cCHHHHHHH
Q 032375 96 ISPNDLKRM 104 (142)
Q Consensus 96 i~~~e~~~~ 104 (142)
++..|...+
T Consensus 71 L~~~E~~qi 79 (117)
T PF03874_consen 71 LTEFEILQI 79 (117)
T ss_dssp S-HHHHHHH
T ss_pred CCHHHHHHH
Confidence 444444333
No 324
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=20.01 E-value=1.6e+02 Score=15.75 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=10.6
Q ss_pred hcCCCCCccCHHHHHHHHH
Q 032375 88 YDFDNRGFISPNDLKRMLA 106 (142)
Q Consensus 88 ~d~~~~g~i~~~e~~~~l~ 106 (142)
...+.+|.|+.+-+..+=+
T Consensus 27 ~~~~~~G~Vpl~~i~~F~r 45 (76)
T cd08029 27 TGGSNNGWVPIKTIASFKR 45 (76)
T ss_pred hccCCCCcEehHHHhCchH
Confidence 3446667777665554433
Done!