Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>032376
MANAIALLSCNTVVLAAQQRPQRRAKKLKKPNTKQNNKNSTSTSSSVGFGIEKMEPLWRC
VQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRNCCSDTIKAI
YGSRSKELDTFNCAICSSDSSC

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032376
        (142 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2151321 - symbol:AT5G02710 "AT5G02710" species...   253  1.1e-21   1


>TAIR|locus:2151321 [details] [associations]
            symbol:AT5G02710 "AT5G02710" species:3702 "Arabidopsis
            thaliana" [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0016556 "mRNA modification" evidence=RCA]
            EMBL:CP002688 EMBL:AL162973 KO:K06940 InterPro:IPR005358
            Pfam:PF03692 UniGene:At.33376 EMBL:AY054553 EMBL:BT006564
            EMBL:AK220584 IPI:IPI00529618 PIR:T48292 RefSeq:NP_195891.1
            STRING:Q9LZ14 PRIDE:Q9LZ14 EnsemblPlants:AT5G02710.1 GeneID:831827
            KEGG:ath:AT5G02710 TAIR:At5g02710 HOGENOM:HOG000232855
            InParanoid:Q9LZ14 OMA:CGACCRL PhylomeDB:Q9LZ14
            ProtClustDB:CLSN2687355 Genevestigator:Q9LZ14 Uniprot:Q9LZ14
        Length = 176

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 50/103 (48%), Positives = 65/103 (63%)

Query:    48 GF-GIEKMEPLWRCVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYE 106
             GF G    E  W+CV+GCGACCK+ K   FATP+EIFD+P DVELYRS+IG DGWC+NY+
Sbjct:    46 GFSGGTTKELTWKCVEGCGACCKIAKDFSFATPDEIFDNPDDVELYRSMIGDDGWCLNYD 105

Query:   107 KSTRNC---------CS---DTIKAIYGSRSKEL--DTFNCAI 135
             K+TR C         C    +  K++YG   K+   +  +C I
Sbjct:   106 KATRKCSIYADRPYFCRVEPEVFKSLYGIEEKKFNKEAVSCCI 148

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 27/52 (51%), Positives = 34/52 (65%)

Query:    90 ELYRSLIGPDGWCINYEKSTRNCCSDTIKAIYGSRSKELDTFNCAICSSDSS 141
             E+++SL G +    N  K   +CC DTIK IYG  SKELD+FN AI S+ SS
Sbjct:   126 EVFKSLYGIEEKKFN--KEAVSCCIDTIKTIYGPDSKELDSFNRAIRSNPSS 175


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.446    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       121   0.00091  102 3  11 22  0.49    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  141 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.58u 0.19s 11.77t   Elapsed:  00:00:01
  Total cpu time:  11.58u 0.19s 11.77t   Elapsed:  00:00:01
  Start:  Sat May 11 03:09:47 2013   End:  Sat May 11 03:09:48 2013

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