Query 032376
Match_columns 142
No_of_seqs 61 out of 63
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 13:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0727 Predicted Fe-S-cluster 97.7 4.6E-06 1E-10 60.1 -1.8 57 56-112 8-74 (132)
2 PF03692 CxxCxxCC: Putative zi 97.4 0.00011 2.5E-09 48.7 2.4 43 60-112 2-56 (85)
3 PF14194 Cys_rich_VLP: Cystein 66.5 4.7 0.0001 27.9 1.9 41 85-135 1-52 (56)
4 PRK05170 hypothetical protein; 58.9 3.5 7.6E-05 33.0 0.3 36 62-112 25-60 (147)
5 cd03453 SAV4209_like SAV4209_l 48.9 20 0.00043 25.4 2.8 34 73-108 2-35 (127)
6 PF11682 DUF3279: Protein of u 45.6 14 0.00031 28.7 1.7 45 67-120 66-123 (128)
7 PF13783 DUF4177: Domain of un 44.0 17 0.00036 23.6 1.6 20 84-103 17-36 (61)
8 KOG1227 Putative methyltransfe 40.1 13 0.00027 33.6 0.8 18 95-112 152-169 (351)
9 TIGR00364 exsB protein. This p 35.0 18 0.0004 27.6 0.9 22 46-67 170-195 (201)
10 PF01355 HIPIP: High potential 33.6 11 0.00024 25.9 -0.5 12 94-105 52-63 (64)
11 PRK13693 (3R)-hydroxyacyl-ACP 33.3 51 0.0011 24.5 3.0 37 70-108 9-45 (142)
12 cd01995 ExsB ExsB is a transcr 31.7 22 0.00048 26.1 0.8 15 53-67 139-157 (169)
13 cd03449 R_hydratase (R)-hydrat 30.9 31 0.00067 23.4 1.4 34 72-108 3-36 (128)
14 cd03451 FkbR2 FkbR2 is a Strep 29.3 44 0.00094 23.6 2.0 38 70-108 7-44 (146)
15 cd00201 WW Two conserved trypt 28.5 39 0.00084 18.4 1.3 13 98-110 1-13 (31)
16 cd00126 PAH Pancreatic Hormone 27.7 69 0.0015 20.3 2.4 14 83-96 11-24 (36)
17 PF11123 DNA_Packaging_2: DNA 26.9 40 0.00087 25.0 1.4 15 87-101 63-77 (82)
18 PF13186 SPASM: Iron-sulfur cl 26.5 65 0.0014 19.4 2.2 22 115-138 34-55 (64)
19 PRK11106 queuosine biosynthesi 26.2 32 0.00069 28.3 0.9 13 55-67 183-200 (231)
20 COG1141 Fer Ferredoxin [Energy 25.2 26 0.00055 24.6 0.2 17 56-73 6-22 (68)
21 PF00159 Hormone_3: Pancreatic 24.6 77 0.0017 20.0 2.2 15 81-95 9-23 (36)
22 PF12157 DUF3591: Protein of u 24.5 47 0.001 30.5 1.7 28 69-96 297-326 (457)
23 PTZ00163 hypothetical protein; 23.3 41 0.00089 28.4 1.1 30 11-40 61-94 (230)
24 PHA00425 DNA packaging protein 22.9 50 0.0011 24.7 1.3 15 87-101 65-79 (88)
25 cd03446 MaoC_like MoaC_like 22.6 68 0.0015 22.5 1.9 37 70-108 5-41 (140)
26 cd03455 SAV4209 SAV4209 is a S 22.4 95 0.0021 21.7 2.6 30 78-108 5-34 (123)
27 smart00309 PAH Pancreatic horm 21.6 1.1E+02 0.0023 19.5 2.4 14 83-96 11-24 (36)
28 cd03447 FAS_MaoC FAS_MaoC, the 21.5 70 0.0015 23.2 1.9 26 83-109 9-34 (126)
29 TIGR03334 IOR_beta indolepyruv 21.2 94 0.002 23.9 2.6 28 78-106 65-92 (189)
30 PF02064 MAS20: MAS20 protein 20.1 34 0.00075 26.1 0.0 16 97-112 9-24 (121)
No 1
>COG0727 Predicted Fe-S-cluster oxidoreductase [General function prediction only]
Probab=97.65 E-value=4.6e-06 Score=60.07 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=42.8
Q ss_pred CceeecccCCcccccCCCCCCCCccccC-----C-----ChhHHHHHHHhhCCCcceeeccCCCccc
Q 032376 56 PLWRCVQGCGACCKLDKGPDFATPEEIF-----D-----DPSDVELYRSLIGPDGWCINYEKSTRNC 112 (142)
Q Consensus 56 ~~W~CI~~CGACC~LdP~eR~~~~le~~-----L-----speel~LYlSMVG~DGWCihyDk~tR~C 112 (142)
..|.|-..|||||.....+...++.+.. + .+.....++.+++-+|||++||+.++.|
T Consensus 8 ~~~~~c~~Cg~cC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~fl~~~~~~C 74 (132)
T COG0727 8 FIFFCCEGCGACCCAIEVSLPEPGFDRGELKGYPADTEALPKYLRCKLLDVDINGRCVFLDGETKLC 74 (132)
T ss_pred hhhhhHHHhhHHhcCCCCCcchhhhhHHHhcCCCccceeecccceeeeecccCCCCCEEecCCCCce
Confidence 4688899999999988776632222211 1 1445577889999999999999999999
No 2
>PF03692 CxxCxxCC: Putative zinc- or iron-chelating domain; InterPro: IPR005358 This family of proteins contain 8 conserved cysteines that may form a zinc binding site. The function of these proteins is unknown.
Probab=97.40 E-value=0.00011 Score=48.68 Aligned_cols=43 Identities=35% Similarity=0.827 Sum_probs=29.6
Q ss_pred ecccCCcccccCCCCCCCCccccCCChhHHHHHHHhhC------------CCcceeeccCCCccc
Q 032376 60 CVQGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIG------------PDGWCINYEKSTRNC 112 (142)
Q Consensus 60 CI~~CGACC~LdP~eR~~~~le~~Lspeel~LYlSMVG------------~DGWCihyDk~tR~C 112 (142)
|.. ||+||+ . ....|+++|++.+..-.+ .+|+|+.+|..++.|
T Consensus 2 C~~-Cg~CC~---~------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~C~fL~~~~~~C 56 (85)
T PF03692_consen 2 CRQ-CGACCR---G------YRVPLTPEEIERIAEHLGIEEEFFLERYAREDGPCPFLDEDNGRC 56 (85)
T ss_pred ccc-HhHHHc---C------CCcCCCHHHHHHHHHHhcCchhhhHHHhhccCCCCcCcCCCCCcc
Confidence 666 999999 1 223445555554333222 889999999999999
No 3
>PF14194 Cys_rich_VLP: Cysteine-rich VLP
Probab=66.54 E-value=4.7 Score=27.94 Aligned_cols=41 Identities=29% Similarity=0.646 Sum_probs=30.1
Q ss_pred ChhHHHHHHHhhCCCcceeeccCCCccc----------hHHhhh-hhhCCCcHHhHHHHHhh
Q 032376 85 DPSDVELYRSLIGPDGWCINYEKSTRNC----------CSDTIK-AIYGSRSKELDTFNCAI 135 (142)
Q Consensus 85 speel~LYlSMVG~DGWCihyDk~tR~C----------CrqqI~-svYG~rS~Em~rF~rai 135 (142)
+|+|....+.||- ++|-|||. -.| |.|-|. ++| =+=|+.||
T Consensus 1 T~~q~r~~~~LV~--~~C~Nyd~--gnCLlLDdge~~~c~q~isys~~------CryFr~AV 52 (56)
T PF14194_consen 1 TPRQRRRIRKLVR--RECCNYDD--GNCLLLDDGECCVCVQSISYSLL------CRYFRAAV 52 (56)
T ss_pred CHHHHHHHHHHHH--HHcccCCC--CCeEEccCCCCcCccceeeccHH------HHHHHHhh
Confidence 5788888888885 68888888 445 899998 444 45666655
No 4
>PRK05170 hypothetical protein; Provisional
Probab=58.92 E-value=3.5 Score=32.99 Aligned_cols=36 Identities=28% Similarity=0.650 Sum_probs=23.6
Q ss_pred ccCCcccccCCCCCCCCccccCCChhHHHHHHHhhCCCcceeeccCCCccc
Q 032376 62 QGCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKSTRNC 112 (142)
Q Consensus 62 ~~CGACC~LdP~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk~tR~C 112 (142)
.|||.||.--.++. ..-+ +|. -++=|.++|..|.+|
T Consensus 25 DgCG~CCl~KleDe--dtge---------i~~----T~vaC~lLD~~T~~C 60 (147)
T PRK05170 25 DGCGKCCLHKLEDE--DTGE---------IYY----TNVACRLLDIKTCQC 60 (147)
T ss_pred hhhhHHhceeeecc--CCCc---------EEE----cceecccccCCCCCC
Confidence 58999997433332 1122 222 256799999999999
No 5
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=48.86 E-value=20 Score=25.38 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=26.7
Q ss_pred CCCCCCccccCCChhHHHHHHHhhCCCcceeeccCC
Q 032376 73 GPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKS 108 (142)
Q Consensus 73 ~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk~ 108 (142)
++++ +....-++.+++..|-.++|+.-| ||+|..
T Consensus 2 G~~~-~~~~~~vt~~~i~~fa~~sgD~np-iH~D~~ 35 (127)
T cd03453 2 GDEL-PPLTPPVSRADLVRYAGASGDFNP-IHYDED 35 (127)
T ss_pred CccC-CceeeecCHHHHHHHHHhhcCCCc-cccCHH
Confidence 3444 233456799999999999999999 999954
No 6
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=45.62 E-value=14 Score=28.74 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=29.2
Q ss_pred ccccCCCCCCCCccccCCChhHHHHHHHhhCCC-----------cceeeccCCCccc--hHHhhhhh
Q 032376 67 CCKLDKGPDFATPEEIFDDPSDVELYRSLIGPD-----------GWCINYEKSTRNC--CSDTIKAI 120 (142)
Q Consensus 67 CC~LdP~eR~~~~le~~Lspeel~LYlSMVG~D-----------GWCihyDk~tR~C--CrqqI~sv 120 (142)
|.+|||+++ .++-+..-..||.++ =||-++=.+.+.| |+..|=|+
T Consensus 66 C~yl~pe~k---------~~~ri~~L~~~i~~~~pv~~~~~W~Cv~C~~~Y~GeK~C~~C~tGiYS~ 123 (128)
T PF11682_consen 66 CPYLDPEEK---------ERRRIKRLRRMIADLDPVPRKTDWHCVMCGNHYHGEKYCPKCGTGIYSI 123 (128)
T ss_pred CceECcccc---------hHHHHHHHHHhccccCCCCcCceEEEecCCCccCcCEecCCCCCcccce
Confidence 777777766 122333445666655 3788887888888 88877554
No 7
>PF13783 DUF4177: Domain of unknown function (DUF4177)
Probab=44.05 E-value=17 Score=23.59 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=17.3
Q ss_pred CChhHHHHHHHhhCCCccee
Q 032376 84 DDPSDVELYRSLIGPDGWCI 103 (142)
Q Consensus 84 Lspeel~LYlSMVG~DGWCi 103 (142)
.++++++..+.-.|.|||=.
T Consensus 17 ~~~~~~~~~Ln~~g~eGWeL 36 (61)
T PF13783_consen 17 IDPEDLEEILNEYGKEGWEL 36 (61)
T ss_pred CCHHHHHHHHHHHHhCCcEE
Confidence 46899999999999999953
No 8
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=40.13 E-value=13 Score=33.61 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=16.4
Q ss_pred hhCCCcceeeccCCCccc
Q 032376 95 LIGPDGWCINYEKSTRNC 112 (142)
Q Consensus 95 MVG~DGWCihyDk~tR~C 112 (142)
|+|++|||.|-|-+-+.|
T Consensus 152 L~Gd~gWV~~v~NGI~~~ 169 (351)
T KOG1227|consen 152 LYGDLGWVKHVQNGITQI 169 (351)
T ss_pred ccccccceeehhcCeEEE
Confidence 789999999999988877
No 9
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=34.98 E-value=18 Score=27.62 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=16.0
Q ss_pred ccccccccCCCceeecc----cCCcc
Q 032376 46 SVGFGIEKMEPLWRCVQ----GCGAC 67 (142)
Q Consensus 46 ~~gf~~~~~~~~W~CI~----~CGAC 67 (142)
.+||....-..+|.|.. +||.|
T Consensus 170 ~~g~~~~~~~~t~sC~~~~~~~CG~C 195 (201)
T TIGR00364 170 ELGVLDLVIKLTYSCYAGGGEGCGKC 195 (201)
T ss_pred HcCCccccHhhCCcCCCcCCCCCCCC
Confidence 34555445678999986 89988
No 10
>PF01355 HIPIP: High potential iron-sulfur protein; InterPro: IPR000170 High potential iron-sulphur proteins (HiPIP) [, ] are a specific class of high-redox potential 4Fe-4S ferredoxins that functions in anaerobic electron transport and which occurs commonly in purple photosynthetic bacteria and in other bacteria, such as Paracoccus denitrificans and Thiobacillus ferrooxidans []. HiPIPs seem to react by oxidation of [4Fe-4S]2+ to [4Fe-4S]3+ The HiPIPs are small proteins which show significant variation in their sequences, their sizes (from 63 to 85 amino acids), and in their oxidation- reduction potentials. As shown in the following schematic representation the iron-sulphur cluster is bound by four conserved cysteine residues. [4Fe-4S cluster] | | | | xxxxxxxxxxxxxxxxxxxCxCxxxxxxxCxxxxxCxxxx 'C': conserved cysteine involved in the binding of the iron-sulphur cluster. ; GO: 0009055 electron carrier activity, 0019646 aerobic electron transport chain; PDB: 1ISU_B 1B0Y_A 1CKU_B 1JS2_D 1HRR_A 1NOE_A 1HRQ_A 1NEH_A 1HIP_A 3A38_A ....
Probab=33.57 E-value=11 Score=25.94 Aligned_cols=12 Identities=33% Similarity=1.232 Sum_probs=7.0
Q ss_pred HhhCCCcceeec
Q 032376 94 SLIGPDGWCINY 105 (142)
Q Consensus 94 SMVG~DGWCihy 105 (142)
-+|.++|||--|
T Consensus 52 k~V~~~GWC~aw 63 (64)
T PF01355_consen 52 KLVNANGWCSAW 63 (64)
T ss_dssp SBEETT-B-TT-
T ss_pred ceECCCcccccc
Confidence 378999999654
No 11
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=33.32 E-value=51 Score=24.54 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=29.2
Q ss_pred cCCCCCCCCccccCCChhHHHHHHHhhCCCcceeeccCC
Q 032376 70 LDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKS 108 (142)
Q Consensus 70 LdP~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk~ 108 (142)
+.+++++ +.....++++|+.+|-.+.|+.-| ||+|..
T Consensus 9 ~~vG~~~-~~~~~tvt~~di~~FA~~sgD~nP-iH~D~~ 45 (142)
T PRK13693 9 VKVGDQL-PEKTYPLTRQDLVNYAGVSGDLNP-IHWDDE 45 (142)
T ss_pred cCCCCCc-CccceeeCHHHHHHHHHHhCCCCc-cccCHH
Confidence 4567776 344446899999999999998877 889865
No 12
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=31.67 E-value=22 Score=26.11 Aligned_cols=15 Identities=40% Similarity=1.232 Sum_probs=12.0
Q ss_pred cCCCceeecc----cCCcc
Q 032376 53 KMEPLWRCVQ----GCGAC 67 (142)
Q Consensus 53 ~~~~~W~CI~----~CGAC 67 (142)
+-..+|+|.. +||+|
T Consensus 139 ~~~~s~sC~~~~~~~CG~C 157 (169)
T cd01995 139 PLELTWSCYNGGEKHCGEC 157 (169)
T ss_pred ChhheeeccCCCCCCCCCC
Confidence 3346899987 99999
No 13
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=30.91 E-value=31 Score=23.42 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCCCCCCccccCCChhHHHHHHHhhCCCcceeeccCC
Q 032376 72 KGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKS 108 (142)
Q Consensus 72 P~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk~ 108 (142)
+++.+ .+.-.++++++.+|-.++|++-+ +|||..
T Consensus 3 ~G~~~--~~~~tv~~~~~~~fa~~~gd~np-iH~D~~ 36 (128)
T cd03449 3 VGDSA--SLTRTITEEDVELFAELSGDFNP-IHLDEE 36 (128)
T ss_pred CCCEE--EEEEEEcHHHHHHHHHHhCCCCC-ccCCHH
Confidence 44443 23335799999999999999888 888865
No 14
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=29.33 E-value=44 Score=23.62 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=27.3
Q ss_pred cCCCCCCCCccccCCChhHHHHHHHhhCCCcceeeccCC
Q 032376 70 LDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKS 108 (142)
Q Consensus 70 LdP~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk~ 108 (142)
|.++++++....-.++.+++..|-.++|+.-+ +|+|..
T Consensus 7 ~~vG~~~~~~~~~tvt~~~i~~fa~~~gd~~p-iH~D~~ 44 (146)
T cd03451 7 FTVGQVFEHAPGRTVTEADNVLFTLLTMNTAP-LHFDAA 44 (146)
T ss_pred CCCccEEecCCCeEEcHHHHHHHHHhhCCCCc-cccCHH
Confidence 34456653233345899999999999999877 788854
No 15
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=28.55 E-value=39 Score=18.39 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=10.6
Q ss_pred CCcceeeccCCCc
Q 032376 98 PDGWCINYEKSTR 110 (142)
Q Consensus 98 ~DGWCihyDk~tR 110 (142)
++||-+++|..+|
T Consensus 1 p~~W~~~~~~~g~ 13 (31)
T cd00201 1 PPGWEERWDPDGR 13 (31)
T ss_pred CCCCEEEECCCCC
Confidence 5799999998755
No 16
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=27.73 E-value=69 Score=20.28 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=10.6
Q ss_pred CCChhHHHHHHHhh
Q 032376 83 FDDPSDVELYRSLI 96 (142)
Q Consensus 83 ~Lspeel~LYlSMV 96 (142)
+.+|||++.|++-+
T Consensus 11 ~a~~eel~~Y~~~L 24 (36)
T cd00126 11 DASPEELRQYLAAL 24 (36)
T ss_pred CCCHHHHHHHHHHH
Confidence 45899999887643
No 17
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=26.95 E-value=40 Score=25.00 Aligned_cols=15 Identities=33% Similarity=0.831 Sum_probs=12.5
Q ss_pred hHHHHHHHhhCCCcc
Q 032376 87 SDVELYRSLIGPDGW 101 (142)
Q Consensus 87 eel~LYlSMVG~DGW 101 (142)
+-++.|.+|||+||-
T Consensus 63 ~aL~ey~~~~g~~~l 77 (82)
T PF11123_consen 63 AALEEYKKMVGADGL 77 (82)
T ss_pred HHHHHHHHHcCCCCC
Confidence 447889999999984
No 18
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=26.54 E-value=65 Score=19.39 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=16.0
Q ss_pred HhhhhhhCCCcHHhHHHHHhhccC
Q 032376 115 DTIKAIYGSRSKELDTFNCAICSS 138 (142)
Q Consensus 115 qqI~svYG~rS~Em~rF~rai~~~ 138 (142)
+.|+.|+ .|.++++|.+.+...
T Consensus 34 ~~l~eiw--~s~~~~~~r~~~~~~ 55 (64)
T PF13186_consen 34 DSLEEIW--NSPKFREFRKRHKKN 55 (64)
T ss_pred CCHHHHH--CCHHHHHHHHHHhCC
Confidence 4577777 778888887777665
No 19
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=26.19 E-value=32 Score=28.27 Aligned_cols=13 Identities=38% Similarity=1.132 Sum_probs=11.1
Q ss_pred CCceeecc-----cCCcc
Q 032376 55 EPLWRCVQ-----GCGAC 67 (142)
Q Consensus 55 ~~~W~CI~-----~CGAC 67 (142)
..||+|.. .||.|
T Consensus 183 ~~T~SCy~g~~g~~CG~C 200 (231)
T PRK11106 183 HETLTCYNGIKGDGCGHC 200 (231)
T ss_pred CceeeccCcCCCCCCCCC
Confidence 67999998 68888
No 20
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=25.19 E-value=26 Score=24.56 Aligned_cols=17 Identities=35% Similarity=0.862 Sum_probs=14.2
Q ss_pred CceeecccCCcccccCCC
Q 032376 56 PLWRCVQGCGACCKLDKG 73 (142)
Q Consensus 56 ~~W~CI~~CGACC~LdP~ 73 (142)
.+|.|| +||+|-..+|+
T Consensus 6 Drd~Ci-gcg~C~~~aPd 22 (68)
T COG1141 6 DRDTCI-GCGACLAVAPD 22 (68)
T ss_pred chhhcc-ccchhhhcCCc
Confidence 468887 89999998876
No 21
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=24.60 E-value=77 Score=19.98 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=11.1
Q ss_pred ccCCChhHHHHHHHh
Q 032376 81 EIFDDPSDVELYRSL 95 (142)
Q Consensus 81 e~~Lspeel~LYlSM 95 (142)
.++-+|||+..|++-
T Consensus 9 ~~~aspeel~~Y~~~ 23 (36)
T PF00159_consen 9 GDFASPEELAQYYAA 23 (36)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 345699999888764
No 22
>PF12157 DUF3591: Protein of unknown function (DUF3591); InterPro: IPR022591 This functionally uncharacterised domain is found centrally in the eukaryotic transcription initiation factor TFIID subunit 1.
Probab=24.45 E-value=47 Score=30.50 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=22.5
Q ss_pred ccCCCCCCCCccccC--CChhHHHHHHHhh
Q 032376 69 KLDKGPDFATPEEIF--DDPSDVELYRSLI 96 (142)
Q Consensus 69 ~LdP~eR~~~~le~~--Lspeel~LYlSMV 96 (142)
.|-|++|.|++.+.- .+||++-+|-||.
T Consensus 297 ~lk~~~~lp~eeelr~mvtPE~vC~~eSM~ 326 (457)
T PF12157_consen 297 VLKPGFRLPDEEELRKMVTPEDVCAYESMQ 326 (457)
T ss_pred EECCCCCCCCHHHHHhhCCHHHHHHHHHHH
Confidence 488899986665443 6999999999996
No 23
>PTZ00163 hypothetical protein; Provisional
Probab=23.32 E-value=41 Score=28.44 Aligned_cols=30 Identities=37% Similarity=0.591 Sum_probs=21.6
Q ss_pred hhHHHHhhcCchHHhhh----cCCCCccccCCCC
Q 032376 11 NTVVLAAQQRPQRRAKK----LKKPNTKQNNKNS 40 (142)
Q Consensus 11 ~~~~~~a~~~pq~~~~k----~~~~~~k~~~~~~ 40 (142)
-|-||...+.||+|.+| +.|.|||+.|.|.
T Consensus 61 ~tsifsgnknpq~r~~k~eee~qkdntk~dndnn 94 (230)
T PTZ00163 61 YTSIFSGNKNPQKRERKNEEENQKDNTKVDNDNN 94 (230)
T ss_pred HhhhhcCCCChhhccccchhhhccccccccCccc
Confidence 46678888999998776 4566777765543
No 24
>PHA00425 DNA packaging protein, small subunit
Probab=22.85 E-value=50 Score=24.75 Aligned_cols=15 Identities=33% Similarity=0.725 Sum_probs=12.5
Q ss_pred hHHHHHHHhhCCCcc
Q 032376 87 SDVELYRSLIGPDGW 101 (142)
Q Consensus 87 eel~LYlSMVG~DGW 101 (142)
+-++-|.++||+||-
T Consensus 65 ~~l~ey~~~~g~d~l 79 (88)
T PHA00425 65 AALEEYKEKVGADGL 79 (88)
T ss_pred HHHHHHHHhcCCCCC
Confidence 447889999999983
No 25
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=22.60 E-value=68 Score=22.48 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=27.9
Q ss_pred cCCCCCCCCccccCCChhHHHHHHHhhCCCcceeeccCC
Q 032376 70 LDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKS 108 (142)
Q Consensus 70 LdP~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk~ 108 (142)
|.++++++ .....++++++..|-.++|+.-+ +|+|..
T Consensus 5 ~~vG~~~~-~~~~tvt~~~i~~fa~~~gD~np-~H~D~~ 41 (140)
T cd03446 5 FEIGQVFE-SVGRTVTEADVVMFAGLSGDWNP-IHTDAE 41 (140)
T ss_pred ccCCCEec-cCCEEECHHHHHHHHHhhCCCcc-cccCHH
Confidence 45566652 23446799999999999999888 788854
No 26
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=22.40 E-value=95 Score=21.68 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=24.2
Q ss_pred CccccCCChhHHHHHHHhhCCCcceeeccCC
Q 032376 78 TPEEIFDDPSDVELYRSLIGPDGWCINYEKS 108 (142)
Q Consensus 78 ~~le~~Lspeel~LYlSMVG~DGWCihyDk~ 108 (142)
|....-++++++..|-.+.|+.-+ ||+|..
T Consensus 5 ~~~~~~vt~~~i~~fa~~s~D~~p-iH~D~~ 34 (123)
T cd03455 5 PRLSIPPDPTLLFRYSAATRDFHR-IHHDRD 34 (123)
T ss_pred CcEEecCCHHHHHHHHhhcCCCCc-ccCCHH
Confidence 334446799999999999999887 889864
No 27
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=21.63 E-value=1.1e+02 Score=19.47 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=10.3
Q ss_pred CCChhHHHHHHHhh
Q 032376 83 FDDPSDVELYRSLI 96 (142)
Q Consensus 83 ~Lspeel~LYlSMV 96 (142)
..+|||+..|++-+
T Consensus 11 ~a~~e~l~~Y~~~L 24 (36)
T smart00309 11 DASPEDLRQYLAAL 24 (36)
T ss_pred CCCHHHHHHHHHHH
Confidence 45899998887643
No 28
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=21.45 E-value=70 Score=23.23 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCChhHHHHHHHhhCCCcceeeccCCC
Q 032376 83 FDDPSDVELYRSLIGPDGWCINYEKST 109 (142)
Q Consensus 83 ~Lspeel~LYlSMVG~DGWCihyDk~t 109 (142)
-.+++|+.+|-.+.|+.-| ||+|..-
T Consensus 9 ~~t~~d~~~fa~lsGD~nP-iH~D~~~ 34 (126)
T cd03447 9 ITAPASNEPYARVSGDFNP-IHVSRVF 34 (126)
T ss_pred EEChHHHHHHHHHhCCCCc-cCCCHHH
Confidence 4699999999999999987 8999653
No 29
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=21.21 E-value=94 Score=23.93 Aligned_cols=28 Identities=14% Similarity=0.149 Sum_probs=25.6
Q ss_pred CccccCCChhHHHHHHHhhCCCcceeecc
Q 032376 78 TPEEIFDDPSDVELYRSLIGPDGWCINYE 106 (142)
Q Consensus 78 ~~le~~Lspeel~LYlSMVG~DGWCihyD 106 (142)
+++-..|+++++..|+..+.++|..+ +|
T Consensus 65 ~Dilvald~~~~~~~~~~l~~~g~ii-~n 92 (189)
T TIGR03334 65 ADLLLAFEPLEALRYLPYLSEGGEVI-LN 92 (189)
T ss_pred CCEEEEeCHHHHHHHHHhcCCCcEEE-Ee
Confidence 78888999999999999999999998 44
No 30
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=20.15 E-value=34 Score=26.06 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=0.0
Q ss_pred CCCcceeeccCCCccc
Q 032376 97 GPDGWCINYEKSTRNC 112 (142)
Q Consensus 97 G~DGWCihyDk~tR~C 112 (142)
+==|.||.||+-.|.=
T Consensus 9 ~~lgYciYFD~KRR~d 24 (121)
T PF02064_consen 9 AFLGYCIYFDYKRRSD 24 (121)
T ss_dssp ----------------
T ss_pred HHHHHHhhcccccccC
Confidence 3458999999987753
Done!