Query 032376
Match_columns 142
No_of_seqs 61 out of 63
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 21:47:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1isu_A High potential iron sul 45.8 4.4 0.00015 27.0 0.0 39 61-106 19-59 (62)
2 1hlq_A Hipip, high-potential i 38.2 5.6 0.00019 27.4 -0.4 37 61-106 35-72 (75)
3 3h31_A High potential iron-sul 36.3 8.2 0.00028 26.5 0.2 38 63-107 34-71 (74)
4 1hpi_A High potential iron sul 34.5 6.6 0.00023 26.7 -0.5 37 62-106 32-69 (71)
5 1yu8_X Villin; alpha helix, 3- 31.0 21 0.00073 24.0 1.6 19 78-96 27-45 (67)
6 2hip_A High potential iron sul 30.7 8.8 0.0003 26.3 -0.4 13 95-107 57-69 (72)
7 1ru0_A DCOH-like protein dcohm 28.8 18 0.00063 25.2 1.0 23 83-105 9-31 (105)
8 2k6m_S Supervillin; SVHP, HP, 28.4 22 0.00075 23.8 1.3 19 78-96 27-45 (67)
9 3anw_B GINS23, putative unchar 26.9 17 0.00059 28.2 0.6 16 81-96 146-161 (171)
10 1ujs_A Actin-binding LIM prote 26.0 25 0.00086 24.8 1.3 19 78-96 42-60 (88)
11 1jmq_A YAP65, 65 kDa YES-assoc 25.7 18 0.00062 21.5 0.4 22 98-119 10-31 (46)
12 3a38_A Hipip, high-potential i 25.5 12 0.00042 26.1 -0.4 13 95-107 68-80 (83)
13 1qzp_A Dematin; villin headpie 25.1 17 0.00058 24.4 0.2 19 78-96 28-46 (68)
14 2b3g_B Cellular tumor antigen 24.8 37 0.0013 19.8 1.7 13 82-94 11-23 (28)
15 1noe_A Hipip, high potential i 24.4 12 0.00042 26.4 -0.6 13 95-107 71-83 (86)
16 2d9z_A Protein kinase C, NU ty 24.3 12 0.00041 28.2 -0.7 13 94-106 6-18 (129)
17 2coa_A Protein kinase C, D2 ty 23.4 13 0.00045 27.7 -0.6 12 95-106 7-18 (125)
18 3k67_A Putative dehydratase AF 22.2 37 0.0013 24.7 1.6 36 70-108 36-71 (159)
19 3ir3_A HTD2, 3-hydroxyacyl-thi 21.1 62 0.0021 22.5 2.5 37 70-109 16-52 (148)
No 1
>1isu_A High potential iron sulfur protein; electron transfer(iron-sulfur protein); 1.50A {Rhodocyclus tenuis} SCOP: g.35.1.1
Probab=45.78 E-value=4.4 Score=26.98 Aligned_cols=39 Identities=18% Similarity=0.515 Sum_probs=24.4
Q ss_pred cccCCcccccCCCCCCCCccccCCChhHHHHHHH--hhCCCcceeecc
Q 032376 61 VQGCGACCKLDKGPDFATPEEIFDDPSDVELYRS--LIGPDGWCINYE 106 (142)
Q Consensus 61 I~~CGACC~LdP~eR~~~~le~~Lspeel~LYlS--MVG~DGWCihyD 106 (142)
-+.|+.|-..-|++. .+. -.+ =.++-. .|.++|||.-|-
T Consensus 19 gq~C~nC~~f~pg~~--~~~---~g~--C~vf~G~k~V~~~GWC~a~~ 59 (62)
T 1isu_A 19 GKKCSGCAQFVPGAS--PTA---AGG--CKVIPGDNQIAPGGYCDAFI 59 (62)
T ss_dssp TBCGGGBTTEECCSS--TTS---CBE--ETTSTTCCCBCTTCBCTTCC
T ss_pred cCccccCcCcccCCC--CCC---CCC--CcCCCCCceeCCCceeeeee
Confidence 367888888877544 111 011 234455 799999998774
No 2
>1hlq_A Hipip, high-potential iron-sulfur protein; iron sulfur cluster, electron transport; HET: SO4; 1.45A {Rhodoferax fermentans} SCOP: g.35.1.1
Probab=38.24 E-value=5.6 Score=27.37 Aligned_cols=37 Identities=19% Similarity=0.486 Sum_probs=20.7
Q ss_pred cccCCcccccCCCCCCCCccccCCChhHHHHHHH-hhCCCcceeecc
Q 032376 61 VQGCGACCKLDKGPDFATPEEIFDDPSDVELYRS-LIGPDGWCINYE 106 (142)
Q Consensus 61 I~~CGACC~LdP~eR~~~~le~~Lspeel~LYlS-MVG~DGWCihyD 106 (142)
-+.|+.|-..-+.......= .++-. +|.++|||.-|-
T Consensus 35 gq~C~nC~~~~~~~~~~g~C---------~if~Gk~V~~~GWC~aw~ 72 (75)
T 1hlq_A 35 DQSCSTCALYQGKTAPQGAC---------PLFAGKEVVAKGWCSAWA 72 (75)
T ss_dssp TCCGGGCTTCCCTTSSEECC---------TTSTTSBEETTCBCTTCC
T ss_pred CCcCccCcCeecCCCCCCcC---------ccccCCeECCCcceeeec
Confidence 36788887776511100001 12222 589999998764
No 3
>3h31_A High potential iron-sulfur protein; electron transport, metal-binding transport; 1.00A {Rhodothermus marinus} SCOP: g.35.1.1
Probab=36.26 E-value=8.2 Score=26.45 Aligned_cols=38 Identities=18% Similarity=0.488 Sum_probs=21.8
Q ss_pred cCCcccccCCCCCCCCccccCCChhHHHHHHHhhCCCcceeeccC
Q 032376 63 GCGACCKLDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEK 107 (142)
Q Consensus 63 ~CGACC~LdP~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk 107 (142)
.|+-|-..-|... .+. .-+= .++-.-|.++|||.-|-+
T Consensus 34 ~C~nC~~f~~~~~--~~~---~G~C--~lf~G~V~~~GWC~aw~~ 71 (74)
T 3h31_A 34 TCANCQLYVPAES--PDQ---CGGC--QLIKGPIHPNGYCTSWVQ 71 (74)
T ss_dssp CGGGBTTEECCSS--TTS---CBEE--SSSCSCBCTTCBCTTCCB
T ss_pred cCccccCccCCCC--CCC---cCCC--ceeCceeCCCeehHHhhc
Confidence 7888888776432 110 0010 122334899999988754
No 4
>1hpi_A High potential iron sulfur protein; electron transfer(iron-sulfur protein); 1.80A {Ectothiorhodospira shaposhnikovii} SCOP: g.35.1.1
Probab=34.50 E-value=6.6 Score=26.73 Aligned_cols=37 Identities=22% Similarity=0.634 Sum_probs=20.3
Q ss_pred ccCCcccccCCCCCCCCccccCCChhHHHHHHH-hhCCCcceeecc
Q 032376 62 QGCGACCKLDKGPDFATPEEIFDDPSDVELYRS-LIGPDGWCINYE 106 (142)
Q Consensus 62 ~~CGACC~LdP~eR~~~~le~~Lspeel~LYlS-MVG~DGWCihyD 106 (142)
+.|+.|-..-+..- .+- .+ =.++-. +|.++|||.-|-
T Consensus 32 q~C~nC~~~~~~~~--~~~----g~--C~if~Gk~V~a~GWC~aw~ 69 (71)
T 1hpi_A 32 QTCLNCLLYTDASA--QDW----GP--CSVFPGKLVSANGWCTAWV 69 (71)
T ss_dssp CCGGGBTTBSCTTC--SSE----EE--BTTSTTEEEETTCBCTTCC
T ss_pred CcCccCcceecCCC--CCc----cc--cccccCCeECCCcceeeec
Confidence 57888877765311 000 00 012223 689999998663
No 5
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=30.98 E-value=21 Score=23.98 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=15.9
Q ss_pred CccccCCChhHHHHHHHhh
Q 032376 78 TPEEIFDDPSDVELYRSLI 96 (142)
Q Consensus 78 ~~le~~Lspeel~LYlSMV 96 (142)
.-+|.|||++|++.-..|.
T Consensus 27 ~~lE~yLsdedF~~vFgms 45 (67)
T 1yu8_X 27 SAKENHLSDEDFKAVFGMT 45 (67)
T ss_dssp TCGGGGSCHHHHHHHHSSC
T ss_pred HHHHhcCCHHHHHHHHCcC
Confidence 5688999999999887764
No 6
>2hip_A High potential iron sulfur protein; electron transfer (iron-sulfur protein); 2.50A {Halorhodospira halophila} SCOP: g.35.1.1 PDB: 1pih_A 1pij_A
Probab=30.67 E-value=8.8 Score=26.32 Aligned_cols=13 Identities=38% Similarity=1.140 Sum_probs=10.4
Q ss_pred hhCCCcceeeccC
Q 032376 95 LIGPDGWCINYEK 107 (142)
Q Consensus 95 MVG~DGWCihyDk 107 (142)
+|.++|||.-|-+
T Consensus 57 ~V~a~GWC~a~~~ 69 (72)
T 2hip_A 57 LVKAEGWCSVYAP 69 (72)
T ss_dssp BEETTCBCTTCCB
T ss_pred EECCCcceeeecc
Confidence 5899999987743
No 7
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=28.75 E-value=18 Score=25.24 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=19.6
Q ss_pred CCChhHHHHHHHhhCCCcceeec
Q 032376 83 FDDPSDVELYRSLIGPDGWCINY 105 (142)
Q Consensus 83 ~Lspeel~LYlSMVG~DGWCihy 105 (142)
.||++|++.+|.-+...||-..-
T Consensus 9 ~Ls~~ei~~~L~~l~~~gW~~~~ 31 (105)
T 1ru0_A 9 WLTAEERDQLIPGLKAAGWSELS 31 (105)
T ss_dssp BCCHHHHHHHHHHHHHTTCEECS
T ss_pred CCCHHHHHHHHHhCCCCCCeEEC
Confidence 58999999999988878997643
No 8
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=28.44 E-value=22 Score=23.84 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.7
Q ss_pred CccccCCChhHHHHHHHhh
Q 032376 78 TPEEIFDDPSDVELYRSLI 96 (142)
Q Consensus 78 ~~le~~Lspeel~LYlSMV 96 (142)
.-+|.|||++|++.-..|.
T Consensus 27 ~~lE~yLsdedF~~vFgms 45 (67)
T 2k6m_S 27 LKLEIYLTDEDFEFALDMT 45 (67)
T ss_dssp TBCGGGSCHHHHHHHTSSC
T ss_pred hHHHhhCCHHHHHHHHCcC
Confidence 5578999999999877764
No 9
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=26.87 E-value=17 Score=28.20 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=13.9
Q ss_pred ccCCChhHHHHHHHhh
Q 032376 81 EIFDDPSDVELYRSLI 96 (142)
Q Consensus 81 e~~Lspeel~LYlSMV 96 (142)
-+-|||||..+|++|.
T Consensus 146 l~rLTpEEk~iy~~l~ 161 (171)
T 3anw_B 146 LSRLAPEERRIYLQMS 161 (171)
T ss_dssp HTTSCHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHH
Confidence 4489999999999985
No 10
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=26.00 E-value=25 Score=24.83 Aligned_cols=19 Identities=11% Similarity=-0.116 Sum_probs=15.5
Q ss_pred CccccCCChhHHHHHHHhh
Q 032376 78 TPEEIFDDPSDVELYRSLI 96 (142)
Q Consensus 78 ~~le~~Lspeel~LYlSMV 96 (142)
.-+|.|||+||++.-..|.
T Consensus 42 tklE~YLSdedF~~vFgMs 60 (88)
T 1ujs_A 42 TRLERHLSQEEFYQVFGMT 60 (88)
T ss_dssp TTGGGGSCTTHHHHHHSSC
T ss_pred HHHHhcCCHHHHHHHHCcC
Confidence 4578999999999887774
No 11
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=25.68 E-value=18 Score=21.49 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=19.6
Q ss_pred CCcceeeccCCCccchHHhhhh
Q 032376 98 PDGWCINYEKSTRNCCSDTIKA 119 (142)
Q Consensus 98 ~DGWCihyDk~tR~CCrqqI~s 119 (142)
|.||=..+|.++|.-|.+||..
T Consensus 10 P~GWe~~~~~~gr~y~~n~~t~ 31 (46)
T 1jmq_A 10 PAGWEMAKTSSGQRYFKNHIDQ 31 (46)
T ss_dssp CTTBCCBCCSSCCCBEEETTTT
T ss_pred CcCcEEEEcCCCceEEEEecCC
Confidence 7899999999999999888865
No 12
>3a38_A Hipip, high-potential iron-sulfur protein; iron-sulfur cluster, electron transport, 4Fe-4S, metal-binding, transport; 0.70A {Thermochromatium tepidum} PDB: 1eyt_A 2ams_A 2fla_A* 1iua_A 3a39_A* 1cku_A 1hrq_A 1hrr_A 1neh_A 1js2_A 1hip_A 1b0y_A 3hip_A
Probab=25.49 E-value=12 Score=26.15 Aligned_cols=13 Identities=38% Similarity=1.104 Sum_probs=10.4
Q ss_pred hhCCCcceeeccC
Q 032376 95 LIGPDGWCINYEK 107 (142)
Q Consensus 95 MVG~DGWCihyDk 107 (142)
+|.++|||.-|-+
T Consensus 68 ~V~~~GWC~aw~~ 80 (83)
T 3a38_A 68 LINVNGWCASWTL 80 (83)
T ss_dssp BEETTCBCTTCCB
T ss_pred EECCCcchhhhcc
Confidence 6889999987743
No 13
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=25.09 E-value=17 Score=24.35 Aligned_cols=19 Identities=11% Similarity=-0.095 Sum_probs=15.1
Q ss_pred CccccCCChhHHHHHHHhh
Q 032376 78 TPEEIFDDPSDVELYRSLI 96 (142)
Q Consensus 78 ~~le~~Lspeel~LYlSMV 96 (142)
.-+|.|||++|++.-..|.
T Consensus 28 ~~lE~yLsdedF~~vFgms 46 (68)
T 1qzp_A 28 MRLERHLSAEDFSRVFAMS 46 (68)
T ss_dssp GGCGGGBCHHHHHHHSSSC
T ss_pred hHHHhhCCHHHHHHHHCcC
Confidence 4478899999998877663
No 14
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=24.82 E-value=37 Score=19.84 Aligned_cols=13 Identities=23% Similarity=0.544 Sum_probs=11.0
Q ss_pred cCCChhHHHHHHH
Q 032376 82 IFDDPSDVELYRS 94 (142)
Q Consensus 82 ~~Lspeel~LYlS 94 (142)
..|||++++++++
T Consensus 11 lmlspddi~qw~s 23 (28)
T 2b3g_B 11 LMLSPDDIEQWFT 23 (28)
T ss_dssp GGCCHHHHHHHHH
T ss_pred hhcChHHHHHHhh
Confidence 3679999999886
No 15
>1noe_A Hipip, high potential iron sulfur protein; electron transport, 4Fe-4S; NMR {Allochromatium vinosum} SCOP: g.35.1.1
Probab=24.45 E-value=12 Score=26.41 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=10.6
Q ss_pred hhCCCcceeeccC
Q 032376 95 LIGPDGWCINYEK 107 (142)
Q Consensus 95 MVG~DGWCihyDk 107 (142)
+|.++|||.-|-+
T Consensus 71 ~V~~~GWC~aw~~ 83 (86)
T 1noe_A 71 LINVNGWSASWTL 83 (86)
T ss_dssp EEETTCCCTTCCB
T ss_pred EECCCcchHhhcc
Confidence 7899999987743
No 16
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.30 E-value=12 Score=28.18 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=9.3
Q ss_pred HhhCCCcceeecc
Q 032376 94 SLIGPDGWCINYE 106 (142)
Q Consensus 94 SMVG~DGWCihyD 106 (142)
|.|=..||||||=
T Consensus 6 s~vlkeGWmVH~t 18 (129)
T 2d9z_A 6 SGMVKEGWMVHYT 18 (129)
T ss_dssp TTSEEEEEEEEEE
T ss_pred CceeecceEEEEc
Confidence 3444679999993
No 17
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.40 E-value=13 Score=27.74 Aligned_cols=12 Identities=25% Similarity=0.709 Sum_probs=8.8
Q ss_pred hhCCCcceeecc
Q 032376 95 LIGPDGWCINYE 106 (142)
Q Consensus 95 MVG~DGWCihyD 106 (142)
.|=..||||||=
T Consensus 7 ~vlkeGW~VH~t 18 (125)
T 2coa_A 7 GTLREGWVVHYS 18 (125)
T ss_dssp SCSEEEEEEECC
T ss_pred ceeecceEEEEc
Confidence 344579999994
No 18
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=22.17 E-value=37 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=28.1
Q ss_pred cCCCCCCCCccccCCChhHHHHHHHhhCCCcceeeccCC
Q 032376 70 LDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKS 108 (142)
Q Consensus 70 LdP~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk~ 108 (142)
|..++++ ..+--+|++|+.+|-.+.|+.-| ||+|..
T Consensus 36 l~vG~~~--~~~rtiT~~di~~FA~~sGD~nP-iH~D~e 71 (159)
T 3k67_A 36 LKEGYRF--EYEKKLCEIDVAMFGLISGDLNP-VHFDED 71 (159)
T ss_dssp CCTTCEE--EEEEECCHHHHHHHHHHHCCCCG-GGTCHH
T ss_pred cCCCCEE--EEEEEEcHHHHHHHHHHHCCCCc-cccCHH
Confidence 4455663 23446799999999999999999 999864
No 19
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural GENO structural genomics consortium, SGC, lyase; 1.99A {Homo sapiens}
Probab=21.08 E-value=62 Score=22.48 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=28.6
Q ss_pred cCCCCCCCCccccCCChhHHHHHHHhhCCCcceeeccCCC
Q 032376 70 LDKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKST 109 (142)
Q Consensus 70 LdP~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk~t 109 (142)
+..+++++ ...-++++++.+|-.+.|+.-| ||+|..-
T Consensus 16 ~~vG~~~~--~~~~vt~~~i~~fa~~sgD~np-iH~D~~~ 52 (148)
T 3ir3_A 16 IKVGDRAE--LRRAFTQTDVATFSELTGDVNP-LHLNEDF 52 (148)
T ss_dssp CCTTCEEE--EEEECCHHHHHHHHHHHCCSSC-GGGSSCC
T ss_pred cCCCCEEE--eeeEECHHHHHHHHHHhCCCCC-ceECHHH
Confidence 44556652 3456799999999999999988 8999763
Done!