Query 032376
Match_columns 142
No_of_seqs 61 out of 63
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 21:47:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032376.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032376hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cmwa1 a.60.7.1 (A:174-289) 5 63.7 1.7 0.00012 28.3 2.0 15 84-98 1-15 (116)
2 d1u5sb2 g.39.1.3 (B:103-137) P 39.8 4.3 0.00031 23.5 0.8 21 103-123 14-34 (35)
3 d2pg3a1 c.26.2.1 (A:1-230) Que 37.8 4.4 0.00032 27.7 0.7 13 55-67 183-200 (230)
4 d1ru0a_ d.74.1.1 (A:) DcoH-lik 36.6 6.1 0.00045 25.6 1.3 26 82-107 3-28 (100)
5 d1rxwa1 a.60.7.1 (A:220-324) F 30.0 12 0.00089 24.0 1.9 16 84-99 1-16 (105)
6 d1q6wa_ d.38.1.4 (A:) Monoamin 29.9 8.7 0.00063 24.8 1.2 36 71-108 11-46 (151)
7 d1iq6a_ d.38.1.4 (A:) (R)-spec 25.4 11 0.00079 24.0 1.0 28 80-108 12-39 (132)
8 d1ls9a_ a.3.1.1 (A:) Cytochrom 25.4 21 0.0015 20.9 2.3 24 78-101 64-91 (91)
9 d1isua_ g.35.1.1 (A:) HIPIP (h 25.0 7.9 0.00057 24.8 0.2 10 96-105 49-58 (62)
10 d1yu5x1 a.14.1.1 (X:10-76) Vil 24.6 15 0.0011 23.2 1.6 19 78-96 27-45 (67)
11 d1c6sa_ a.3.1.1 (A:) Cytochrom 21.3 33 0.0024 19.9 2.6 23 79-101 60-85 (87)
12 d1w4ta1 d.3.1.5 (A:1-277) Aryl 20.6 24 0.0018 25.7 2.3 20 83-102 3-22 (277)
13 d1ijwc_ a.4.1.2 (C:) HIN recom 20.4 21 0.0016 20.6 1.5 18 83-101 5-22 (47)
No 1
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=63.74 E-value=1.7 Score=28.25 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=13.5
Q ss_pred CChhHHHHHHHhhCC
Q 032376 84 DDPSDVELYRSLIGP 98 (142)
Q Consensus 84 Lspeel~LYlSMVG~ 98 (142)
+.|+++..|++|+|+
T Consensus 1 ~~P~~~~~~~~l~GD 15 (116)
T d1cmwa1 1 LRPDQWADYRALTGD 15 (116)
T ss_dssp CCGGGHHHHHHTTCC
T ss_pred CCHHHHHHHHHHhCc
Confidence 579999999999993
No 2
>d1u5sb2 g.39.1.3 (B:103-137) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.83 E-value=4.3 Score=23.54 Aligned_cols=21 Identities=19% Similarity=0.559 Sum_probs=19.4
Q ss_pred eeccCCCccchHHhhhhhhCC
Q 032376 103 INYEKSTRNCCSDTIKAIYGS 123 (142)
Q Consensus 103 ihyDk~tR~CCrqqI~svYG~ 123 (142)
.||++.+..+|.+|....||+
T Consensus 14 rhyE~~g~ayCe~Hy~qLfg~ 34 (35)
T d1u5sb2 14 RHYERKGLAYCETHYNQLFGD 34 (35)
T ss_dssp CCEEETTEEECHHHHHHHCSC
T ss_pred hhhhhcCchHHHHHHHHHhcc
Confidence 599999999999999999986
No 3
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=37.80 E-value=4.4 Score=27.66 Aligned_cols=13 Identities=38% Similarity=1.058 Sum_probs=10.1
Q ss_pred CCceeec-----ccCCcc
Q 032376 55 EPLWRCV-----QGCGAC 67 (142)
Q Consensus 55 ~~~W~CI-----~~CGAC 67 (142)
..||+|. ++||.|
T Consensus 183 ~~T~SCy~~~~~~~CG~C 200 (230)
T d2pg3a1 183 YHTLTCYNGIKGDGCGQC 200 (230)
T ss_dssp HHCCCCTTSCCTTTTSCS
T ss_pred hccCCCCCCCCCCCCCCC
Confidence 4589994 479999
No 4
>d1ru0a_ d.74.1.1 (A:) DcoH-like protein DCoH2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.60 E-value=6.1 Score=25.59 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=20.8
Q ss_pred cCCChhHHHHHHHhhCCCcceeeccC
Q 032376 82 IFDDPSDVELYRSLIGPDGWCINYEK 107 (142)
Q Consensus 82 ~~Lspeel~LYlSMVG~DGWCihyDk 107 (142)
..|+++|++.+|.-+-.+||=+.-|.
T Consensus 3 ~~Lt~~ei~~~L~~L~~~gW~~~~~~ 28 (100)
T d1ru0a_ 3 QWLTAEERDQLIPGLKAAGWSELSER 28 (100)
T ss_dssp SBCCHHHHHHHHHHHHHTTCEECSSS
T ss_pred ccCCHHHHHHHHhhCCCCCCEEECCC
Confidence 48999999999987767899875443
No 5
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.96 E-value=12 Score=24.05 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=14.0
Q ss_pred CChhHHHHHHHhhCCC
Q 032376 84 DDPSDVELYRSLIGPD 99 (142)
Q Consensus 84 Lspeel~LYlSMVG~D 99 (142)
||+||+--|..|+|.|
T Consensus 1 lt~eq~iD~~~L~GsD 16 (105)
T d1rxwa1 1 LTREQLIDIAILVGTD 16 (105)
T ss_dssp CCHHHHHHHHHHHCBT
T ss_pred CCHHHHHHHHHHhCCC
Confidence 6899999999999943
No 6
>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.87 E-value=8.7 Score=24.82 Aligned_cols=36 Identities=8% Similarity=-0.076 Sum_probs=26.8
Q ss_pred CCCCCCCCccccCCChhHHHHHHHhhCCCcceeeccCC
Q 032376 71 DKGPDFATPEEIFDDPSDVELYRSLIGPDGWCINYEKS 108 (142)
Q Consensus 71 dP~eR~~~~le~~Lspeel~LYlSMVG~DGWCihyDk~ 108 (142)
..++++ +....-++++++..|-..+|+..+ +|+|..
T Consensus 11 ~vG~~~-~~~~~tit~~~i~~fa~~~gd~~p-ih~d~~ 46 (151)
T d1q6wa_ 11 QIGEKI-EGLPRTVTETDIWTFAYLTADFFP-LHTDVE 46 (151)
T ss_dssp CTTCEE-ECCCEECCHHHHHHHHHHHTCCCH-HHHCHH
T ss_pred CCCCEE-eecCeEECHHHHHHHHHHhCCCCc-eEEChh
Confidence 345554 223335799999999999999999 588764
No 7
>d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}
Probab=25.42 E-value=11 Score=24.01 Aligned_cols=28 Identities=7% Similarity=-0.017 Sum_probs=23.7
Q ss_pred cccCCChhHHHHHHHhhCCCcceeeccCC
Q 032376 80 EEIFDDPSDVELYRSLIGPDGWCINYEKS 108 (142)
Q Consensus 80 le~~Lspeel~LYlSMVG~DGWCihyDk~ 108 (142)
+.-.+|++|+..|-.++|+.-+ +|+|..
T Consensus 12 ~~~~it~~di~~fa~~sgD~nP-iH~D~~ 39 (132)
T d1iq6a_ 12 LSKRFGAAEVAAFAALSEDFNP-LHLDPA 39 (132)
T ss_dssp EEEECCHHHHHHHHHHHTCCCH-HHHCHH
T ss_pred EEEEECHHHHHHHHHHHCCCCC-cEEcHH
Confidence 3445799999999999999999 899863
No 8
>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]}
Probab=25.38 E-value=21 Score=20.89 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=15.8
Q ss_pred CccccCCChhHHHH----HHHhhCCCcc
Q 032376 78 TPEEIFDDPSDVEL----YRSLIGPDGW 101 (142)
Q Consensus 78 ~~le~~Lspeel~L----YlSMVG~DGW 101 (142)
|.....||+||+.. .+|+-+.+||
T Consensus 64 P~~~~~Lsdeei~~l~aYi~~~a~~~~w 91 (91)
T d1ls9a_ 64 PAWADRLDEDDIEAVSNYVYDQAVNSKW 91 (91)
T ss_dssp CCCTTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccCCCHHHHHHHHHHHHHHcCCCCC
Confidence 33445789999754 3466677787
No 9
>d1isua_ g.35.1.1 (A:) HIPIP (high potential iron protein) {Rhodocyclus tenuis [TaxId: 1066]}
Probab=25.03 E-value=7.9 Score=24.77 Aligned_cols=10 Identities=40% Similarity=1.179 Sum_probs=8.2
Q ss_pred hCCCcceeec
Q 032376 96 IGPDGWCINY 105 (142)
Q Consensus 96 VG~DGWCihy 105 (142)
|.|.|||.-|
T Consensus 49 IsP~GwC~af 58 (62)
T d1isua_ 49 IAPGGYCDAF 58 (62)
T ss_dssp BCTTCBCTTC
T ss_pred cCCCceeEEE
Confidence 6789999866
No 10
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.59 E-value=15 Score=23.20 Aligned_cols=19 Identities=11% Similarity=0.031 Sum_probs=15.8
Q ss_pred CccccCCChhHHHHHHHhh
Q 032376 78 TPEEIFDDPSDVELYRSLI 96 (142)
Q Consensus 78 ~~le~~Lspeel~LYlSMV 96 (142)
.-+|.|||++|++.-..|.
T Consensus 27 ~~lE~yLsd~dF~~vFgms 45 (67)
T d1yu5x1 27 SRKENHLSDEDFKAVFGMT 45 (67)
T ss_dssp TCGGGGSCHHHHHHHHSSC
T ss_pred HHHHhhCCHHHHHHHHCcC
Confidence 6688999999998877764
No 11
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}
Probab=21.32 E-value=33 Score=19.91 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=15.1
Q ss_pred ccccCCChhHHHHHHHhh---CCCcc
Q 032376 79 PEEIFDDPSDVELYRSLI---GPDGW 101 (142)
Q Consensus 79 ~le~~Lspeel~LYlSMV---G~DGW 101 (142)
.....||++|+..-...| .+.||
T Consensus 60 ~~~~~Ls~~ei~~v~aYi~~~a~~gw 85 (87)
T d1c6sa_ 60 AFAGRLTDEQIQDVAAYVLDQAAKGW 85 (87)
T ss_dssp CCTTTSCSHHHHHHHHHHHHHTTSCT
T ss_pred cccCCCCHHHHHHHHHHHHHHHhcCC
Confidence 344468999877654444 67788
No 12
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.60 E-value=24 Score=25.71 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=17.5
Q ss_pred CCChhHHHHHHHhhCCCcce
Q 032376 83 FDDPSDVELYRSLIGPDGWC 102 (142)
Q Consensus 83 ~Lspeel~LYlSMVG~DGWC 102 (142)
.|||+|++.||.-||=+|..
T Consensus 3 ~lt~~ql~~YL~RIg~~~~~ 22 (277)
T d1w4ta1 3 PLTPEQTHAYLHHIGIDDPG 22 (277)
T ss_dssp CCCHHHHHHHHHHHTCSCCC
T ss_pred CCCHHHHHHHHHhcCCCCCC
Confidence 58999999999999977763
No 13
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=20.38 E-value=21 Score=20.60 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=15.6
Q ss_pred CCChhHHHHHHHhhCCCcc
Q 032376 83 FDDPSDVELYRSLIGPDGW 101 (142)
Q Consensus 83 ~Lspeel~LYlSMVG~DGW 101 (142)
.||+||++.-+.|+. +|.
T Consensus 5 ~lt~~q~~~a~~l~~-~G~ 22 (47)
T d1ijwc_ 5 AINKHEQEQISRLLE-KGH 22 (47)
T ss_dssp SSCHHHHHHHHHHHH-TTC
T ss_pred cCCHHHHHHHHHHHH-CCC
Confidence 689999999999994 575
Done!