Query 032378
Match_columns 142
No_of_seqs 105 out of 396
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 13:18:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04387 PTPLA: Protein tyrosi 100.0 2.2E-55 4.7E-60 337.7 8.3 137 1-137 25-164 (164)
2 PLN02838 3-hydroxyacyl-CoA deh 100.0 1.7E-54 3.7E-59 346.2 9.1 136 1-136 79-218 (221)
3 KOG3187 Protein tyrosine phosp 100.0 1E-49 2.2E-54 317.6 8.3 141 1-141 80-223 (223)
4 COG5198 Ptpl Protein tyrosine 100.0 1.9E-38 4.2E-43 244.5 7.6 125 1-137 76-201 (209)
5 PF07297 DPM2: Dolichol phosph 70.8 3.8 8.3E-05 28.1 2.2 48 82-131 27-76 (78)
6 PF01151 ELO: GNS1/SUR4 family 65.1 42 0.0009 27.0 7.6 36 31-66 150-191 (250)
7 PF11044 TMEMspv1-c74-12: Plec 44.2 40 0.00087 20.9 3.2 14 102-115 8-21 (49)
8 PRK13454 F0F1 ATP synthase sub 40.2 42 0.00091 25.8 3.6 41 94-134 20-68 (181)
9 COG4512 AgrB Membrane protein 33.0 45 0.00098 26.5 2.8 34 55-88 65-100 (198)
10 PF12669 P12: Virus attachment 32.0 54 0.0012 20.9 2.6 17 115-131 10-26 (58)
11 PF03814 KdpA: Potassium-trans 27.4 63 0.0014 29.7 3.1 74 54-131 162-275 (552)
12 PRK13460 F0F1 ATP synthase sub 26.8 1.2E+02 0.0026 23.0 4.1 13 122-134 41-53 (173)
13 COG3114 CcmD Heme exporter pro 23.2 1.6E+02 0.0034 19.6 3.6 16 118-133 30-45 (67)
14 PF06305 DUF1049: Protein of u 22.2 1.5E+02 0.0033 18.4 3.4 26 108-133 26-51 (68)
15 CHL00019 atpF ATP synthase CF0 21.2 98 0.0021 23.6 2.8 12 122-133 49-60 (184)
16 PF14770 TMEM18: Transmembrane 21.0 2.7E+02 0.0059 20.4 4.9 53 78-136 67-120 (123)
17 TIGR00597 rad10 DNA repair pro 20.3 10 0.00022 27.7 -2.8 16 27-42 96-111 (112)
18 PF05915 DUF872: Eukaryotic pr 20.1 2.2E+02 0.0048 20.6 4.2 26 105-130 78-103 (115)
No 1
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=100.00 E-value=2.2e-55 Score=337.73 Aligned_cols=137 Identities=44% Similarity=0.823 Sum_probs=131.9
Q ss_pred CceehhhhhhheeeccccccCCchHHHHHHHHHHhhhhhhhhhHHHHhhCCCCchhhhhhhccccccccchhhHHHHHHH
Q 032378 1 MQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLN 80 (142)
Q Consensus 1 ~QV~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i~ 80 (142)
+||+||++++|++++..||++.++++++|++|||++|+|||+||+++++|.+|++|+|||||+|+||||+|++||+.+++
T Consensus 25 ~Qv~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsl~EviRY~yY~~~l~~~~p~~L~WLRYs~FivLYPlG~~~E~~~~~ 104 (164)
T PF04387_consen 25 MQVFSRLFVVWGVIYPFPEVQSSPAVPLLLIAWSLTEVIRYPYYALKLLGIVPYWLTWLRYSAFIVLYPLGILSELLLIY 104 (164)
T ss_pred HHHHHHHHeehhhhccccccccccchhhHHHHHHhhhcchhHHHHHHhcCCCchHHHHHHHhhHhhccchHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccchhhhcccccccC---CCcchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccccchh
Q 032378 81 QAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQ 137 (142)
Q Consensus 81 ~alp~~~~~~~~s~~mP---~~~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk~l~~~~ 137 (142)
+|+|++++++.++.+|| |+++++++++++++++|+||+|++|+||++||||+++|+|
T Consensus 105 ~al~~~~~~~~~~~~~pn~~n~~~~~~~~~~~~l~~y~pg~~~ly~hM~~qRrK~l~~~~ 164 (164)
T PF04387_consen 105 RALPYIKETKRYSVRMPNSWNFSFSYYYFLIFVLLLYIPGFPFLYSHMLKQRRKKLGKKK 164 (164)
T ss_pred HhCcccccCCeeeeecCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999 6667778889999999999999999999999999997653
No 2
>PLN02838 3-hydroxyacyl-CoA dehydratase subunit of elongase
Probab=100.00 E-value=1.7e-54 Score=346.21 Aligned_cols=136 Identities=30% Similarity=0.580 Sum_probs=127.4
Q ss_pred CceehhhhhhheeeccccccCCchHHHHHHHHHHhhhhhhhhhHHHH-hhCCCCchhhhhhhccccccccchhhHHHHHH
Q 032378 1 MQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALN-TIGACPHWLTYLRYTMFIPLYPIGVLGEMLLL 79 (142)
Q Consensus 1 ~QV~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~-~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i 79 (142)
+||+||++++|+|++..||+++++.++.|++|||++|+||||||+++ +.|.+|++|+|||||+|+||||+|+.||+.+|
T Consensus 79 ~QV~sR~~iv~~v~~~~p~~~~~~~~~~l~~aWs~tEvIRY~yY~~~~~~~~~p~~L~WLRYt~FivLYPlGi~~E~~~i 158 (221)
T PLN02838 79 PQIGSRLFLTWGILWSFPEVRSHILVTSLVISWSITEIIRYSFFGMKEAFGFAPSWLLWLRYSTFLLLYPTGITSEVGLI 158 (221)
T ss_pred HHHHHHHHHHHHHhhcCcchhcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHhccceecchHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999987 55999999999999999999999999999999
Q ss_pred HHhccchhhhcccccccC---CCcchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccccch
Q 032378 80 NQAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKR 136 (142)
Q Consensus 80 ~~alp~~~~~~~~s~~mP---~~~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk~l~~~ 136 (142)
|+|+|++++++.|+.+|| |++|++.+++++++++|+||+|+||+||++||||+++|+
T Consensus 159 ~~al~~~~~~~~~s~~~Pn~~n~sf~~~~~l~~~l~~YiPg~~~ly~hM~~QRkK~l~~k 218 (221)
T PLN02838 159 YIALPYMKASEKYCLRMPNKWNFSFDYFYASILVLAIYVPGSPHMYSYMLGQRKKALSKS 218 (221)
T ss_pred HHhchhhhcccccchhcCcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999 444555566889999999999999999999999999643
No 3
>KOG3187 consensus Protein tyrosine phosphatase-like protein PTPLA (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=1e-49 Score=317.59 Aligned_cols=141 Identities=38% Similarity=0.698 Sum_probs=132.9
Q ss_pred CceehhhhhhheeeccccccCCchHHHHHHHHHHhhhhhhhhhHHHHhhCCCCchhhhhhhccccccccchhhHHHHHHH
Q 032378 1 MQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLN 80 (142)
Q Consensus 1 ~QV~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i~ 80 (142)
+||.||++++|++++..++++.++++..++.+|+++|++||+||+++++|..|++++|||||+|++|||+|++||+.+++
T Consensus 80 ~Qv~sRl~il~~i~~~~~~~~~~~~~~~l~~~ws~tEIiRY~fY~f~~~~~~p~~l~wlRYt~Fi~LYP~Gi~~E~l~i~ 159 (223)
T KOG3187|consen 80 FQVSSRLFILWGIFHMCSIIQASAVVFFLLIAWSLTEIIRYSFYAFNLLGVLPKLLTWLRYTLFILLYPIGITSELLTLY 159 (223)
T ss_pred eeecccceehhhhhhccchhhccchHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhHhhhhhheeeecceehhhHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccchhhhcccccccC---CCcchHHHHHHHHHHHhhhhHHHHHHHHHHHHcccccchhhhhc
Q 032378 81 QAFPYMKEKNIFANFFA---GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQEKKK 141 (142)
Q Consensus 81 ~alp~~~~~~~~s~~mP---~~~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk~l~~~~~~~k 141 (142)
+|+|++++++.+|++|| |..||+.+|+++++++|+||+|++|+||.+||||.++++++|||
T Consensus 160 ~al~~~~~~~~~sv~~pn~~n~~f~~~~fL~i~ml~Yipgf~~l~~hm~~QRkk~l~~~r~~~~ 223 (223)
T KOG3187|consen 160 AALPAAGETERFSVVMPNKLNISFDFFSFLWIVMLLYIPGFYQLYSHMLKQRKKILKKKRKKKK 223 (223)
T ss_pred HHHHHhcccceeEEEcCccccchhHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhcccccccCC
Confidence 99999999999999999 55556666788889999999999999999999999987776653
No 4
>COG5198 Ptpl Protein tyrosine phosphatase-like protein (contains Pro instead of catalytic Arg) [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=244.45 Aligned_cols=125 Identities=30% Similarity=0.506 Sum_probs=107.3
Q ss_pred CceehhhhhhheeeccccccCCchHHHHHHHHHHhhhhhhhhhHHHHhhCCCCchhhhhhhccccccccchhhHHHHHHH
Q 032378 1 MQWCGRTLFFLVTACEIVQVQDHPSLFITFLAWCLIEVIRYPFYALNTIGACPHWLTYLRYTMFIPLYPIGVLGEMLLLN 80 (142)
Q Consensus 1 ~QV~sR~~vv~~v~~~~p~~~~~~~~~~l~~aWsi~EviRY~yY~~~~~~~~p~~L~WLRYt~FivLYPlGv~~E~~~i~ 80 (142)
+||.||++++|||+++.-.+-+++.++.+.+|||++|++||.||++++-| .|..|+|||||+|.+|||+|+++|+.|++
T Consensus 76 ~Qv~SRl~ivwgvf~p~~~~i~s~~y~s~~~aWsiteivRYafY~F~lng-~p~~l~~lRYNlFlilyPiG~~sE~~~~~ 154 (209)
T COG5198 76 MQVISRLFIVWGVFYPYCGIINSWTYPSITTAWSITEIVRYAFYTFRLNG-IPNTLRVLRYNLFLILYPIGFVSEMYCLR 154 (209)
T ss_pred HHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhhhhhhhhhhcchHHHHHHHHHH
Confidence 69999999999999665555559999999999999999999999999966 79999999999999999999999999999
Q ss_pred HhccchhhhcccccccCCCcchHH-HHHHHHHHHhhhhHHHHHHHHHHHHcccccchh
Q 032378 81 QAFPYMKEKNIFANFFAGLPFSYY-NVVQVVFVMYPFAWIKLYSHMLKQRGSKLGKRQ 137 (142)
Q Consensus 81 ~alp~~~~~~~~s~~mP~~~f~~~-~~l~~~l~~yipg~~~ly~hM~~QRkk~l~~~~ 137 (142)
.+..-.+.. | ++. -.+.+++++|+||||+||+||++||||..+.++
T Consensus 155 ~~~naa~~~--~---------Sllk~vl~~~ml~YiPGf~~lf~HMlaQRkk~~K~~r 201 (209)
T COG5198 155 ALYNAAGKI--F---------SLLKVVLPIVMLLYIPGFIFLFSHMLAQRKKSRKVKR 201 (209)
T ss_pred HHHHHHHHH--H---------HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 887544441 1 122 335678899999999999999999999985433
No 5
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=70.83 E-value=3.8 Score=28.09 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=26.7
Q ss_pred hccchhhhc-ccccccC-CCcchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Q 032378 82 AFPYMKEKN-IFANFFA-GLPFSYYNVVQVVFVMYPFAWIKLYSHMLKQRGS 131 (142)
Q Consensus 82 alp~~~~~~-~~s~~mP-~~~f~~~~~l~~~l~~yipg~~~ly~hM~~QRkk 131 (142)
-+|++++++ .+++.+| .++...+.++....+..+ |. ++-..|+|++||
T Consensus 27 llPFvd~d~~i~~~F~Pr~yAi~lP~~lll~~~~~v-g~-f~g~vmik~~~k 76 (78)
T PF07297_consen 27 LLPFVDEDHPIHSFFPPREYAIILPIFLLLLGLSGV-GT-FLGYVMIKSKKK 76 (78)
T ss_pred HhcccCCCchHHHcCCCHHHHHHHHHHHHHHHHHHH-HH-HHHHHHhhcccc
Confidence 456777654 3555666 666666655433333222 22 345578887774
No 6
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=65.11 E-value=42 Score=27.02 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=24.6
Q ss_pred HHHHhhhhhhhhhHHHHhhCCCCc------hhhhhhhccccc
Q 032378 31 LAWCLIEVIRYPFYALNTIGACPH------WLTYLRYTMFIP 66 (142)
Q Consensus 31 ~aWsi~EviRY~yY~~~~~~~~p~------~L~WLRYt~Fiv 66 (142)
+.=+..-++-|.||+++.+|.... .+|-+--..|++
T Consensus 150 ~~N~~VH~iMY~YY~l~a~g~~~~~~~~k~~IT~~Qi~QF~~ 191 (250)
T PF01151_consen 150 ALNSFVHVIMYSYYFLSALGIRKVPRWWKKYITSLQIVQFVI 191 (250)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHHHHHHhHHhhhhhHH
Confidence 444788999999999998886422 344444455543
No 7
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=44.25 E-value=40 Score=20.90 Aligned_cols=14 Identities=7% Similarity=0.102 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHhh
Q 032378 102 SYYNVVQVVFVMYP 115 (142)
Q Consensus 102 ~~~~~l~~~l~~yi 115 (142)
-|+-..++.++.|+
T Consensus 8 iFsvvIil~If~~i 21 (49)
T PF11044_consen 8 IFSVVIILGIFAWI 21 (49)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 8
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=40.18 E-value=42 Score=25.83 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=22.7
Q ss_pred cccCCCcch-H----HHHHHHHHHHhhhhHHH---HHHHHHHHHccccc
Q 032378 94 NFFAGLPFS-Y----YNVVQVVFVMYPFAWIK---LYSHMLKQRGSKLG 134 (142)
Q Consensus 94 ~~mP~~~f~-~----~~~l~~~l~~yipg~~~---ly~hM~~QRkk~l~ 134 (142)
-.||.++++ | -++++.++++|+....+ =...++.+|++...
T Consensus 20 ~gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~ 68 (181)
T PRK13454 20 PGMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTIT 68 (181)
T ss_pred CCCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358855553 2 23344444444443222 25688899998873
No 9
>COG4512 AgrB Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
Probab=32.99 E-value=45 Score=26.51 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=23.3
Q ss_pred hhhhhhhccccc--cccchhhHHHHHHHHhccchhh
Q 032378 55 WLTYLRYTMFIP--LYPIGVLGEMLLLNQAFPYMKE 88 (142)
Q Consensus 55 ~L~WLRYt~Fiv--LYPlGv~~E~~~i~~alp~~~~ 88 (142)
.-+|+|+++|=. -=-+|.+...++++-..||+-.
T Consensus 65 Sy~flR~na~GaHak~SI~Ctl~Sll~fv~~py~~~ 100 (198)
T COG4512 65 SYTFLRVNAFGAHAKHSIGCTLLSLLMFVLIPYVPF 100 (198)
T ss_pred HHHHHHHHcccccccccccchHHHHHHHHHHHHHHh
Confidence 357899998843 2345556667778888887766
No 10
>PF12669 P12: Virus attachment protein p12 family
Probab=32.05 E-value=54 Score=20.89 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHcc
Q 032378 115 PFAWIKLYSHMLKQRGS 131 (142)
Q Consensus 115 ipg~~~ly~hM~~QRkk 131 (142)
...++.+..+++|++|+
T Consensus 10 ~~~~~v~~r~~~k~~K~ 26 (58)
T PF12669_consen 10 AAVAYVAIRKFIKDKKK 26 (58)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33445567899999886
No 11
>PF03814 KdpA: Potassium-transporting ATPase A subunit; InterPro: IPR004623 Kdp is a high affinity ATP-driven K+ transport system in Escherichia coli. It is composed of three membrane-bound subunits, KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is the K+-transporting subunit of this complex. During assembly of the complex, KdpA and KdpC bind to each other. This interaction is thought to stabilise the complex. Data indicates that KdpC might connect the KdpA, the K+-transporting subunit, to KdpB, the ATP-hydrolysing (energy providing) subunit [].; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0005886 plasma membrane
Probab=27.40 E-value=63 Score=29.69 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=48.4
Q ss_pred chhhhhhhccccccccchhhHHHHHHHHhccc---------------------------------------hhhhccccc
Q 032378 54 HWLTYLRYTMFIPLYPIGVLGEMLLLNQAFPY---------------------------------------MKEKNIFAN 94 (142)
Q Consensus 54 ~~L~WLRYt~FivLYPlGv~~E~~~i~~alp~---------------------------------------~~~~~~~s~ 94 (142)
-|.+..| +...+|-|+.+..-++++.+..|- ++.+..+++
T Consensus 162 FwvDl~R-~~l~vLLPlS~v~AliLv~qGVpQtf~~~~~v~tleg~~Q~i~~GPvAs~eaIK~LGTNGGGff~aNSAhPf 240 (552)
T PF03814_consen 162 FWVDLVR-STLRVLLPLSFVFALILVSQGVPQTFSGYVTVTTLEGATQTIPLGPVASQEAIKQLGTNGGGFFGANSAHPF 240 (552)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHhcCccccccCCceeeeeccceeeeccCccHHHHHHHHhccCCCcccCCCCCCCC
Confidence 3778888 455678899999999999888771 111112222
Q ss_pred ccCCCcchHHHHHHHHHHHhhh-hHHHHHHHHHHHHcc
Q 032378 95 FFAGLPFSYYNVVQVVFVMYPF-AWIKLYSHMLKQRGS 131 (142)
Q Consensus 95 ~mP~~~f~~~~~l~~~l~~yip-g~~~ly~hM~~QRkk 131 (142)
+=|+ .++-++-.+.++-+| +.++.|.+|.+.||+
T Consensus 241 ENPt---~~sN~~e~~~illIP~al~~~fG~~~~~~rq 275 (552)
T PF03814_consen 241 ENPT---PLSNFLEMLSILLIPAALPFTFGRMVGDRRQ 275 (552)
T ss_pred CCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 2220 134456566666666 669999999998875
No 12
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.81 E-value=1.2e+02 Score=22.95 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=10.4
Q ss_pred HHHHHHHHccccc
Q 032378 122 YSHMLKQRGSKLG 134 (142)
Q Consensus 122 y~hM~~QRkk~l~ 134 (142)
...++.+|++...
T Consensus 41 i~~~l~~R~~~I~ 53 (173)
T PRK13460 41 ILKALDERASGVQ 53 (173)
T ss_pred HHHHHHHHHHHHH
Confidence 6788899998873
No 13
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=23.17 E-value=1.6e+02 Score=19.63 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHcccc
Q 032378 118 WIKLYSHMLKQRGSKL 133 (142)
Q Consensus 118 ~~~ly~hM~~QRkk~l 133 (142)
.-.+..|-++|||+.|
T Consensus 30 l~~l~v~sv~qrr~iL 45 (67)
T COG3114 30 LAVLVVHSVLQRRAIL 45 (67)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467789999999999
No 14
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.19 E-value=1.5e+02 Score=18.42 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=14.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHcccc
Q 032378 108 QVVFVMYPFAWIKLYSHMLKQRGSKL 133 (142)
Q Consensus 108 ~~~l~~yipg~~~ly~hM~~QRkk~l 133 (142)
..+++..+.|.-......+++|++.-
T Consensus 26 ~~f~~G~llg~l~~~~~~~~~r~~~~ 51 (68)
T PF06305_consen 26 IAFLLGALLGWLLSLPSRLRLRRRIR 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666555555566666543
No 15
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.20 E-value=98 Score=23.63 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=10.0
Q ss_pred HHHHHHHHcccc
Q 032378 122 YSHMLKQRGSKL 133 (142)
Q Consensus 122 y~hM~~QRkk~l 133 (142)
...++.+|++..
T Consensus 49 I~~~l~~R~~~I 60 (184)
T CHL00019 49 LSDLLDNRKQTI 60 (184)
T ss_pred HHHHHHHHHHHH
Confidence 468899999887
No 16
>PF14770 TMEM18: Transmembrane protein 18
Probab=21.00 E-value=2.7e+02 Score=20.41 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=23.4
Q ss_pred HHHHhccchhhhcccccccCCCcchHHHH-HHHHHHHhhhhHHHHHHHHHHHHcccccch
Q 032378 78 LLNQAFPYMKEKNIFANFFAGLPFSYYNV-VQVVFVMYPFAWIKLYSHMLKQRGSKLGKR 136 (142)
Q Consensus 78 ~i~~alp~~~~~~~~s~~mP~~~f~~~~~-l~~~l~~yipg~~~ly~hM~~QRkk~l~~~ 136 (142)
=.++.-.|++++|.| .+.-++.- +...+++-+--...+-.-|.+-+|+.+++|
T Consensus 67 ~~Fs~qnYFDs~G~F------isvv~s~PlLl~~~ii~~~~l~~~~~lmv~~Kr~qlr~~ 120 (123)
T PF14770_consen 67 RSFSKQNYFDSSGVF------ISVVFSAPLLLNCLIILVNWLYQLCSLMVQVKRAQLRRK 120 (123)
T ss_pred HHHhhccCcCCCCee------ehHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677776654 22222221 222222222233445555555566666433
No 17
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.30 E-value=10 Score=27.73 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhhhh
Q 032378 27 FITFLAWCLIEVIRYP 42 (142)
Q Consensus 27 ~~l~~aWsi~EviRY~ 42 (142)
.++++|||.-|.-||.
T Consensus 96 ~TLilaws~eEaa~Yl 111 (112)
T TIGR00597 96 CTLILAWSFEEAARYL 111 (112)
T ss_pred cEEEEECCHHHHHHhh
Confidence 5688999999999984
No 18
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=20.07 E-value=2.2e+02 Score=20.58 Aligned_cols=26 Identities=8% Similarity=0.089 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHc
Q 032378 105 NVVQVVFVMYPFAWIKLYSHMLKQRG 130 (142)
Q Consensus 105 ~~l~~~l~~yipg~~~ly~hM~~QRk 130 (142)
-++++.+++.+||+|.++--...=|.
T Consensus 78 ~llilG~L~fIPG~Y~~~i~y~a~rg 103 (115)
T PF05915_consen 78 ALLILGILCFIPGFYHTRIAYYAWRG 103 (115)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHcC
Confidence 35778888999999987765555444
Done!