Query 032378
Match_columns 142
No_of_seqs 105 out of 396
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 21:48:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kpa_A ARNO(375-400); hydrolas 15.5 23 0.00079 18.6 -0.6 14 123-136 7-20 (26)
2 2a1i_A DNA excision repair pro 11.3 17 0.00058 26.7 -2.6 17 27-43 113-129 (146)
3 1s99_A YKOF; thiamin-binding p 9.3 1E+02 0.0034 23.5 1.0 29 65-93 119-147 (200)
4 4b19_A PEPA1; toxin, toxin apo 9.0 1.8E+02 0.006 15.6 1.6 14 119-132 17-30 (30)
5 3im4_C Dual specificity A kina 8.9 1.2E+02 0.0042 17.7 1.0 9 31-39 17-25 (45)
6 3rfr_C PMOC; membrane, oxidore 8.7 5.1E+02 0.017 20.4 4.9 57 78-134 33-93 (256)
7 2db7_A Hairy/enhancer-OF-split 6.3 1.6E+02 0.0054 18.2 0.7 13 30-42 23-35 (64)
8 3si5_X Protein CASC5; BUBR1-bl 6.2 1.2E+02 0.0042 15.4 0.1 8 69-76 2-9 (24)
9 1e8o_B SRP14, signal recogniti 5.9 3.8E+02 0.013 18.0 2.6 18 119-136 79-96 (106)
10 1vf5_H Protein PET N; photosyn 4.7 5E+02 0.017 13.7 2.0 17 24-40 8-24 (29)
No 1
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=15.53 E-value=23 Score=18.61 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=10.9
Q ss_pred HHHHHHHcccccch
Q 032378 123 SHMLKQRGSKLGKR 136 (142)
Q Consensus 123 ~hM~~QRkk~l~~~ 136 (142)
-+|++.|||++..+
T Consensus 7 Ydml~~RKkKi~~~ 20 (26)
T 2kpa_A 7 YEMLAARKKRISVK 20 (26)
T ss_dssp HHHHTCTHHHHHCH
T ss_pred HHHHHHHHHHhccc
Confidence 38999999988543
No 2
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=11.33 E-value=17 Score=26.66 Aligned_cols=17 Identities=35% Similarity=0.383 Sum_probs=14.7
Q ss_pred HHHHHHHHhhhhhhhhh
Q 032378 27 FITFLAWCLIEVIRYPF 43 (142)
Q Consensus 27 ~~l~~aWsi~EviRY~y 43 (142)
.++++|||.-|.-||.=
T Consensus 113 ~TLiLawS~eEaa~Yle 129 (146)
T 2a1i_A 113 CTLILAWSPEEAGRYLE 129 (146)
T ss_dssp CEEEEESSHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHH
Confidence 56789999999999974
No 3
>1s99_A YKOF; thiamin-binding protein, ACT-domain family, ligand binding protein; 1.65A {Bacillus subtilis} SCOP: d.58.48.2 PDB: 1sbr_A* 1s7h_A
Probab=9.33 E-value=1e+02 Score=23.51 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=24.4
Q ss_pred cccccchhhHHHHHHHHhccchhhhcccc
Q 032378 65 IPLYPIGVLGEMLLLNQAFPYMKEKNIFA 93 (142)
Q Consensus 65 ivLYPlGv~~E~~~i~~alp~~~~~~~~s 93 (142)
+-|||+|.--=|-.|+..+...++.+.+.
T Consensus 119 fslYpmg~~~ym~~I~~~i~~a~~~g~~~ 147 (200)
T 1s99_A 119 FALYPMNEPDYMGLIMEAVDIAKAQGTFV 147 (200)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCCccHHHHHHHHHHHHHHcCccc
Confidence 45999999999999999999998876543
No 4
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=8.98 E-value=1.8e+02 Score=15.64 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHccc
Q 032378 119 IKLYSHMLKQRGSK 132 (142)
Q Consensus 119 ~~ly~hM~~QRkk~ 132 (142)
.-+|.|-++.|.|+
T Consensus 17 valF~hWL~~r~~k 30 (30)
T 4b19_A 17 IAFFSYWLSRRNTK 30 (30)
T ss_dssp HHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhccCC
Confidence 45789999998864
No 5
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=8.86 E-value=1.2e+02 Score=17.71 Aligned_cols=9 Identities=44% Similarity=0.984 Sum_probs=6.9
Q ss_pred HHHHhhhhh
Q 032378 31 LAWCLIEVI 39 (142)
Q Consensus 31 ~aWsi~Evi 39 (142)
+||-++|+|
T Consensus 17 MAWqIA~MI 25 (45)
T 3im4_C 17 LAWKIAKMI 25 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 578888876
No 6
>3rfr_C PMOC; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_C
Probab=8.71 E-value=5.1e+02 Score=20.42 Aligned_cols=57 Identities=5% Similarity=-0.005 Sum_probs=37.0
Q ss_pred HHHHhccchhhhcccccccCCCcchHHHH----HHHHHHHhhhhHHHHHHHHHHHHccccc
Q 032378 78 LLNQAFPYMKEKNIFANFFAGLPFSYYNV----VQVVFVMYPFAWIKLYSHMLKQRGSKLG 134 (142)
Q Consensus 78 ~i~~alp~~~~~~~~s~~mP~~~f~~~~~----l~~~l~~yipg~~~ly~hM~~QRkk~l~ 134 (142)
.++..+-.+++.-.++..|-..+..|+.+ +..=+++-+..+-.+++++.|-|.+.+.
T Consensus 33 ~~y~~~r~Yqq~faw~~GLDs~~PeF~~yWm~ll~~e~~l~~~~~~~~~g~lWkTRdr~~~ 93 (256)
T 3rfr_C 33 VFYLIVRIYEQVFGWRAGLDSFAPEFQTYWMSILWTEIPLELVSGLGLAGYLWKTRDRNVD 93 (256)
T ss_dssp HHHHHHHHHHHHHHTTTSSCTTSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCT
T ss_pred HHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHheeecCcchh
Confidence 34445555555555555555555566654 3444555566778899999999999883
No 7
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=6.32 E-value=1.6e+02 Score=18.24 Aligned_cols=13 Identities=46% Similarity=0.590 Sum_probs=10.2
Q ss_pred HHHHHhhhhhhhh
Q 032378 30 FLAWCLIEVIRYP 42 (142)
Q Consensus 30 ~~aWsi~EviRY~ 42 (142)
-+.=|+.||.||.
T Consensus 23 Gf~eC~~EV~rfL 35 (64)
T 2db7_A 23 GFRECLAEVARYL 35 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4556899999985
No 8
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=6.23 E-value=1.2e+02 Score=15.37 Aligned_cols=8 Identities=38% Similarity=0.655 Sum_probs=4.6
Q ss_pred cchhhHHH
Q 032378 69 PIGVLGEM 76 (142)
Q Consensus 69 PlGv~~E~ 76 (142)
|+|.++|-
T Consensus 2 ~~~~ssek 9 (24)
T 3si5_X 2 PLGSSSEN 9 (26)
T ss_pred CCccchhh
Confidence 55666653
No 9
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=5.94 E-value=3.8e+02 Score=18.01 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHcccccch
Q 032378 119 IKLYSHMLKQRGSKLGKR 136 (142)
Q Consensus 119 ~~ly~hM~~QRkk~l~~~ 136 (142)
..-|...++-----|++|
T Consensus 79 ~~~Y~~v~K~~M~gLKkr 96 (106)
T 1e8o_B 79 QMAYSNLLRANMDGLKKR 96 (106)
T ss_dssp HHHHHHHHHHHCCCCC--
T ss_pred HHHHHHHHHhcccccCcc
Confidence 344444444444445444
No 10
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=4.75 E-value=5e+02 Score=13.70 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhhh
Q 032378 24 PSLFITFLAWCLIEVIR 40 (142)
Q Consensus 24 ~~~~~l~~aWsi~EviR 40 (142)
++....++.+|++-|++
T Consensus 8 WaalmvvftfSlslVVW 24 (29)
T 1vf5_H 8 WVALLVVFTWSIAMVVW 24 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhheeeeEEEE
Done!