Query 032378
Match_columns 142
No_of_seqs 105 out of 396
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 21:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032378.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032378hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74h1 f.23.27.1 (H:3-29) Pet 23.8 25 0.0018 17.0 2.0 16 24-39 6-21 (27)
2 d1s99a_ d.58.48.2 (A:) Putativ 19.8 16 0.0012 26.1 1.0 30 64-93 110-139 (189)
3 d2a1ia1 c.52.1.20 (A:99-227) D 11.3 7.8 0.00057 26.2 -2.6 16 27-42 96-111 (129)
4 d2db7a1 a.273.1.1 (A:3-57) Hai 9.4 42 0.0031 19.1 0.6 14 29-42 15-28 (55)
5 d1k1va_ a.37.1.1 (A:) Mafg {Mo 9.2 40 0.0029 18.1 0.4 10 126-135 29-38 (41)
6 d1l8na2 d.92.2.2 (A:4-142) alp 4.6 73 0.0053 20.4 -0.1 6 57-62 5-10 (139)
7 d1h41a2 d.92.2.2 (A:5-151) alp 3.4 1.1E+02 0.008 19.7 -0.1 6 57-62 6-11 (147)
8 d1dlca2 b.77.2.1 (A:290-499) d 3.3 63 0.0046 22.3 -1.5 9 67-75 1-9 (210)
9 d1kuqa_ a.16.1.2 (A:) Ribosoma 3.3 1.7E+02 0.012 17.4 0.8 12 122-133 53-64 (84)
10 d1a32a_ a.16.1.2 (A:) Ribosoma 3.2 1.8E+02 0.013 17.3 0.8 11 123-133 55-65 (85)
No 1
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.76 E-value=25 Score=16.99 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHhhhhh
Q 032378 24 PSLFITFLAWCLIEVI 39 (142)
Q Consensus 24 ~~~~~l~~aWsi~Evi 39 (142)
+...+.++.||++-++
T Consensus 6 wv~llvvftwsiamvv 21 (27)
T d2e74h1 6 WVALLVVFTWSIAMVV 21 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhheeeeEE
Confidence 3445678899998664
No 2
>d1s99a_ d.58.48.2 (A:) Putative thiamin/HMP-binding protein YkoF {Bacillus subtilis [TaxId: 1423]}
Probab=19.78 E-value=16 Score=26.08 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.2
Q ss_pred ccccccchhhHHHHHHHHhccchhhhcccc
Q 032378 64 FIPLYPIGVLGEMLLLNQAFPYMKEKNIFA 93 (142)
Q Consensus 64 FivLYPlGv~~E~~~i~~alp~~~~~~~~s 93 (142)
=+-|||+|..--|--||..+.+.++.+.|.
T Consensus 110 qfsLYpmg~~d~m~~Iy~~id~~k~~G~~~ 139 (189)
T d1s99a_ 110 QFALYPMNEPDYMGLIMEAVDIAKAQGTFV 139 (189)
T ss_dssp EEEEEETTCTTHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEecCCccHHHHHHHHHHHHHHcCCCc
Confidence 356999999888999999999999976543
No 3
>d2a1ia1 c.52.1.20 (A:99-227) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.30 E-value=7.8 Score=26.16 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhhhhh
Q 032378 27 FITFLAWCLIEVIRYP 42 (142)
Q Consensus 27 ~~l~~aWsi~EviRY~ 42 (142)
.++++|||.-|.-||.
T Consensus 96 ~TLilaws~eEaa~Yl 111 (129)
T d2a1ia1 96 CTLILAWSPEEAGRYL 111 (129)
T ss_dssp CEEEEESSHHHHHHHH
T ss_pred CEEEEEcCHHHHHHHH
Confidence 5678999999999995
No 4
>d2db7a1 a.273.1.1 (A:3-57) Hairy/enhancer-of-split related with YRPW motif protein 1; HESR-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.37 E-value=42 Score=19.09 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=10.9
Q ss_pred HHHHHHhhhhhhhh
Q 032378 29 TFLAWCLIEVIRYP 42 (142)
Q Consensus 29 l~~aWsi~EviRY~ 42 (142)
+-+.=|.+||-||.
T Consensus 15 ~GF~ECa~EV~RyL 28 (55)
T d2db7a1 15 LGFRECLAEVARYL 28 (55)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 45666899999985
No 5
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.22 E-value=40 Score=18.10 Aligned_cols=10 Identities=50% Similarity=0.574 Sum_probs=6.7
Q ss_pred HHHHcccccc
Q 032378 126 LKQRGSKLGK 135 (142)
Q Consensus 126 ~~QRkk~l~~ 135 (142)
+||||+.|+.
T Consensus 29 lKqrRRTLKN 38 (41)
T d1k1va_ 29 LKQRRRTLKN 38 (41)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhc
Confidence 5788777643
No 6
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.62 E-value=73 Score=20.39 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=4.1
Q ss_pred hhhhhc
Q 032378 57 TYLRYT 62 (142)
Q Consensus 57 ~WLRYt 62 (142)
-||||.
T Consensus 5 ~WLrY~ 10 (139)
T d1l8na2 5 CWLRYE 10 (139)
T ss_dssp TTCCCC
T ss_pred hhcCCC
Confidence 388875
No 7
>d1h41a2 d.92.2.2 (A:5-151) alpha-D-glucuronidase, N-terminal domain {Pseudomonas cellulosa [TaxId: 155077]}
Probab=3.37 E-value=1.1e+02 Score=19.72 Aligned_cols=6 Identities=50% Similarity=1.110 Sum_probs=4.2
Q ss_pred hhhhhc
Q 032378 57 TYLRYT 62 (142)
Q Consensus 57 ~WLRYt 62 (142)
.||||.
T Consensus 6 ~WLrY~ 11 (147)
T d1h41a2 6 MWLRYQ 11 (147)
T ss_dssp TTCCCC
T ss_pred HhhCCC
Confidence 478874
No 8
>d1dlca2 b.77.2.1 (A:290-499) delta-Endotoxin (insectocide), middle domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=3.33 E-value=63 Score=22.35 Aligned_cols=9 Identities=56% Similarity=0.752 Sum_probs=4.9
Q ss_pred cccchhhHH
Q 032378 67 LYPIGVLGE 75 (142)
Q Consensus 67 LYPlGv~~E 75 (142)
|||+++.+|
T Consensus 1 lYPi~T~~e 9 (210)
T d1dlca2 1 LYPKEVKTE 9 (210)
T ss_dssp TCCSBEECC
T ss_pred CCCCCccce
Confidence 455555555
No 9
>d1kuqa_ a.16.1.2 (A:) Ribosomal protein S15 {Thermus thermophilus [TaxId: 274]}
Probab=3.31 E-value=1.7e+02 Score=17.37 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=9.3
Q ss_pred HHHHHHHHcccc
Q 032378 122 YSHMLKQRGSKL 133 (142)
Q Consensus 122 y~hM~~QRkk~l 133 (142)
...|+.||+|.|
T Consensus 53 L~~lv~kRkklL 64 (84)
T d1kuqa_ 53 LLMMVGQRRRLL 64 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346888999888
No 10
>d1a32a_ a.16.1.2 (A:) Ribosomal protein S15 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.18 E-value=1.8e+02 Score=17.29 Aligned_cols=11 Identities=27% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHcccc
Q 032378 123 SHMLKQRGSKL 133 (142)
Q Consensus 123 ~hM~~QRkk~l 133 (142)
..|+.||+|.|
T Consensus 55 ~~lv~~RrklL 65 (85)
T d1a32a_ 55 LKMVGKRRRLL 65 (85)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Done!