Query 032380
Match_columns 142
No_of_seqs 152 out of 441
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 21:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_Z 60S ribosomal protein L 100.0 1.1E-50 3.8E-55 317.3 -4.8 140 1-142 22-162 (162)
2 2zkr_u 60S ribosomal protein L 100.0 9.5E-48 3.3E-52 299.7 0.2 137 1-138 20-156 (157)
3 4a17_T RPL24, 60S ribosomal pr 100.0 6.5E-46 2.2E-50 289.5 2.5 113 1-114 22-134 (158)
4 3izc_Z 60S ribosomal protein R 100.0 1.5E-44 5E-49 281.2 -5.6 127 1-128 20-151 (155)
5 1vq8_U 50S ribosomal protein L 99.9 5.1E-25 1.8E-29 150.4 0.3 46 1-46 20-65 (66)
6 3j21_V 50S ribosomal protein L 99.8 1.9E-21 6.4E-26 132.8 2.7 41 1-41 21-61 (66)
7 3jyw_S 60S ribosomal protein L 99.8 5.6E-20 1.9E-24 117.2 0.3 33 1-33 13-45 (45)
8 1mty_D Methane monooxygenase h 67.5 2.2 7.5E-05 38.1 1.9 36 4-45 426-465 (512)
9 3ge3_A Toluene-4-monooxygenase 56.9 4.2 0.00014 36.2 1.7 23 6-30 422-444 (500)
10 3u52_A Phenol hydroxylase comp 52.5 6 0.00021 35.2 2.0 23 6-30 425-447 (511)
11 2inc_A Toluene, O-xylene monoo 51.1 5.4 0.00018 35.2 1.4 36 4-41 419-456 (491)
12 3tgv_A Heme-binding protein HU 48.5 4.4 0.00015 29.2 0.4 27 2-28 35-61 (148)
13 2q9k_A Uncharacterized protein 33.9 11 0.00038 27.4 0.6 28 1-28 42-71 (151)
14 3db0_A LIN2891 protein; putati 28.2 16 0.00055 24.6 0.6 28 2-29 37-64 (128)
15 3f7e_A Pyridoxamine 5'-phospha 28.2 18 0.00062 24.6 0.9 27 2-28 36-62 (131)
16 3mcb_B Transcription factor BT 25.2 19 0.00066 23.2 0.5 16 2-17 12-27 (58)
17 4f6r_C Stathmin-like domain R1 24.9 1.3E+02 0.0043 20.9 4.7 32 67-98 42-73 (87)
18 2hpu_A NOSL protein; alpha bet 24.7 33 0.0011 26.1 1.8 19 6-24 43-61 (175)
19 3lkx_A Transcription factor BT 22.7 23 0.00078 23.4 0.5 16 2-17 12-27 (66)
20 2qea_A Putative general stress 22.0 49 0.0017 23.6 2.2 29 5-33 39-68 (160)
21 3ec6_A General stress protein 21.8 25 0.00085 24.2 0.6 27 2-28 35-61 (139)
22 2iab_A Hypothetical protein; N 21.3 21 0.00073 25.4 0.2 27 2-28 46-72 (155)
23 2l8e_A Polyhomeotic-like prote 21.1 26 0.00091 21.7 0.5 11 11-21 38-48 (49)
24 1vl7_A Hypothetical protein AL 20.6 28 0.00096 24.6 0.7 26 3-28 52-78 (157)
No 1
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=100.00 E-value=1.1e-50 Score=317.30 Aligned_cols=140 Identities=82% Similarity=1.175 Sum_probs=53.4
Q ss_pred CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHHHhHhccCCCccccchhhhcHHHHHHHHhcCh
Q 032380 1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKP 80 (142)
Q Consensus 1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~~Raivg~SLe~I~~kR~qk~ 80 (142)
|||+|||+||+||||||++||++++|||+|.||.+||+.|+||+++|++++++|+++++|||+|||+||++|+++|||+|
T Consensus 22 ~fVr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~qRaivg~sL~~I~~kRnqkp 101 (162)
T 3iz5_Z 22 RFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKP 101 (162)
T ss_dssp EEECTTSCEEEECSHHHHHHHHHTCCGGGTSSSCSCCCCCCCCCCSSSSSSSCC--------------------------
T ss_pred EEEecCCCEEEEECHHHHHHHHcccCcccchhHHHHHHHhccchhhHHHHHHHhcCCccccHHHHHhhHHHHHHHHccCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccccCCCCC-CCCCCCCCCCCCCCCCCC
Q 032380 81 EVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSM-PKGAAPKGPKLGGGGGKR 142 (142)
Q Consensus 81 e~r~a~re~a~~e~Kek~k~~~a~kka~ka~~~~~~k~~~k~~~-~k~~~~~~~~~~g~~~~~ 142 (142)
|+|.|+||++|+|+||++++.++.+++++++.++.++++.++.+ +++. ..|..||+||.+
T Consensus 102 evR~A~Re~air~~Kekkka~~a~kka~~a~~~~~~k~~~~~~~~~~~~--~~~~~~~~~~~~ 162 (162)
T 3iz5_Z 102 EVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGA--KGPKIGGGGGKR 162 (162)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccCcccC--CCCCCCCCCCCC
Confidence 99999999999999999999999999999888888888888766 6655 889999999875
No 2
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9.5e-48 Score=299.66 Aligned_cols=137 Identities=35% Similarity=0.565 Sum_probs=36.8
Q ss_pred CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHHHhHhccCCCccccchhhhcHHHHHHHHhcCh
Q 032380 1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKP 80 (142)
Q Consensus 1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~~Raivg~SLe~I~~kR~qk~ 80 (142)
|||+|||+||+||||||++||++++|||+|.||.+||++|+||+++|..+++++ ++++|||+|||+||++|+++|||+|
T Consensus 20 ~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~KkR~r-~~vK~~R~ivg~sl~~I~~kR~qkp 98 (157)
T 2zkr_u 20 RYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTR-RAVKFQRAITGASLADIMAKRNQKP 98 (157)
T ss_dssp EEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC-------------------------------------------
T ss_pred EEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHHHHHHHHHhc-CccceeHHHHHhhHHHHHHHHccCH
Confidence 899999999999999999999999999999999999999999999876544443 5669999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCC
Q 032380 81 EVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAAPKGPKLGGG 138 (142)
Q Consensus 81 e~r~a~re~a~~e~Kek~k~~~a~kka~ka~~~~~~k~~~k~~~~k~~~~~~~~~~g~ 138 (142)
|+|.++||++|+|+||+++++++.++++.+...+..+++++++..++.+..+|+|||+
T Consensus 99 evr~a~r~~ai~~~Ke~kk~~~~~kk~~~~~~~~~~~~~~~~k~~k~~~k~a~~v~g~ 156 (157)
T 2zkr_u 99 EVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGK 156 (157)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhccccccccCCCCCCC
Confidence 9999999999999999999999988887654444335666777788888888999975
No 3
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=100.00 E-value=6.5e-46 Score=289.48 Aligned_cols=113 Identities=27% Similarity=0.370 Sum_probs=40.8
Q ss_pred CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHHHhHhccCCCccccchhhhcHHHHHHHHhcCh
Q 032380 1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKP 80 (142)
Q Consensus 1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~~Raivg~SLe~I~~kR~qk~ 80 (142)
|||+|||+||+||||||++||++++|||+|.||.+||++|+||+++|++ +++++++++|||+|||+||++|+++|||+|
T Consensus 22 ~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~-kkr~~r~vK~~R~ivg~sl~~I~~kR~qkp 100 (158)
T 4a17_T 22 RFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIA-QKKKKRNVTVARAIVGISLEEINRRKNLDA 100 (158)
T ss_dssp EEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC---------------------------------------
T ss_pred EEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcchHHHH-HHHhcCCcccchhhhhhhHHHHHHHHccCH
Confidence 8999999999999999999999999999999999999999999999988 556666779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032380 81 EVRDAAREAALREIKERIKKTKDEKRAKKAEVTS 114 (142)
Q Consensus 81 e~r~a~re~a~~e~Kek~k~~~a~kka~ka~~~~ 114 (142)
|+|.++||++|+|+||+++++++.++++++..++
T Consensus 101 e~r~a~re~ai~~~Kekkka~~~~kka~~a~~~~ 134 (158)
T 4a17_T 101 SHKKAEAEKAVRELKQKKANDIEKKRADRKLQGK 134 (158)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999988876553
No 4
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=100.00 E-value=1.5e-44 Score=281.18 Aligned_cols=127 Identities=40% Similarity=0.613 Sum_probs=51.8
Q ss_pred CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHHHhHhccCCCccccchhhhcHHHHHHHHhcCh
Q 032380 1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKP 80 (142)
Q Consensus 1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~~Raivg~SLe~I~~kR~qk~ 80 (142)
|||+|||+||+||||||++||++++|||+|.||.+||++|+||+++|++ +++++++++|||+|||+||++|+++|+++|
T Consensus 20 ~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~-kkR~~~~vK~~R~ivg~sl~~Ik~~r~~k~ 98 (155)
T 3izc_Z 20 LFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVA-KKRSRKTVKAQRPITGASLDLIKERRSLKP 98 (155)
T ss_dssp EEECTTCCEEEESSHHHHHHHHHTCCHHHHSSSCSCCCCCCCCCCCSCC-CCCCC-------------------------
T ss_pred EEEecCCCEEEEEcHHHHHHHHhccCcccchhHHHHHHHhCCchhhHHH-HHHhcCCccchHHHHHhhHHHHHHHHhhCH
Confidence 8999999999999999999999999999999999999999999999988 667777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhc-----cccCCCCCCCCC
Q 032380 81 EVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKS-----KTQSKGSMPKGA 128 (142)
Q Consensus 81 e~r~a~re~a~~e~Kek~k~~~a~kka~ka~~~~~~-----k~~~k~~~~k~~ 128 (142)
+++.++++++|+++||+++++++.++++++..+..+ +++.+|.++++.
T Consensus 99 e~r~a~r~~aik~~Kekkka~~~~kk~~~a~~~~~~~~~~~~~~~kg~~~k~~ 151 (155)
T 3izc_Z 99 EVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVA 151 (155)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhhhhhhccccccccc
Confidence 999999999999999999999999998876654332 444455444443
No 5
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=99.89 E-value=5.1e-25 Score=150.42 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=36.7
Q ss_pred CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHH
Q 032380 1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAA 46 (142)
Q Consensus 1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~ 46 (142)
|||+|||+||+||||||++||++++|||+|.||++||++|+||+++
T Consensus 20 ~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~~ 65 (66)
T 1vq8_U 20 MFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDE 65 (66)
T ss_dssp EEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC---------
T ss_pred EEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhcccccc
Confidence 8999999999999999999999999999999999999999998865
No 6
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.82 E-value=1.9e-21 Score=132.79 Aligned_cols=41 Identities=32% Similarity=0.619 Sum_probs=39.2
Q ss_pred CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhh
Q 032380 1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHK 41 (142)
Q Consensus 1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~k 41 (142)
|||+|||+||+||||||++||++++|||+|.||++||+..-
T Consensus 21 ~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~~ 61 (66)
T 3j21_V 21 MYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEARL 61 (66)
T ss_dssp EEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHHH
T ss_pred EEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHhh
Confidence 89999999999999999999999999999999999998754
No 7
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.76 E-value=5.6e-20 Score=117.21 Aligned_cols=33 Identities=33% Similarity=0.600 Sum_probs=32.6
Q ss_pred CcccccCceEeeechHHHHHhhccCCCcchhHH
Q 032380 1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWT 33 (142)
Q Consensus 1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT 33 (142)
|||+|||+||+||||||++||++++|||+|.||
T Consensus 13 ~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT 45 (45)
T 3jyw_S 13 LFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45 (45)
T ss_dssp EECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred EEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence 899999999999999999999999999999998
No 8
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=67.45 E-value=2.2 Score=38.07 Aligned_cols=36 Identities=8% Similarity=0.228 Sum_probs=28.0
Q ss_pred cccCceEeeechHHHHHhhccCCCcch----hHHHHHHHhhhhhHH
Q 032380 4 WLWVKVFLFANSKCKRYFHNRLKPSKL----TWTSMYRKQHKKDIA 45 (142)
Q Consensus 4 r~Dgkvf~FcssKC~~~f~~krnPRKl----~WT~~yRr~~kK~~~ 45 (142)
--+|+.|+|||.-|...|. .||-+. .|+ | .++-++.
T Consensus 426 ~y~G~~y~FCs~~Ck~~F~--~~PerY~~~~~~~---~-~~G~~l~ 465 (512)
T 1mty_D 426 EYNGEMHTFSDQWGERMWL--AEPERYECQNIFE---Q-YEGRELS 465 (512)
T ss_dssp EETTEEEEESSHHHHHHHH--HCGGGCCCCCHHH---H-STTCBHH
T ss_pred EECCEEEEecCHHHHHHHH--hChHHhhhcchHH---H-hcCCCHH
Confidence 3589999999999999997 688775 566 4 6775543
No 9
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=56.94 E-value=4.2 Score=36.24 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=20.2
Q ss_pred cCceEeeechHHHHHhhccCCCcch
Q 032380 6 WVKVFLFANSKCKRYFHNRLKPSKL 30 (142)
Q Consensus 6 Dgkvf~FcssKC~~~f~~krnPRKl 30 (142)
+|+.|+|||.-|+..|. .||-+.
T Consensus 422 ~G~~y~fCs~~C~~~f~--~~Pe~y 444 (500)
T 3ge3_A 422 NGRLYHFGSEVDRWVFQ--QDPVQY 444 (500)
T ss_dssp TTEEEEESSHHHHHHHH--HCHHHH
T ss_pred CCEEEEecCHHHHHHHH--hChHHH
Confidence 79999999999999997 677665
No 10
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=52.50 E-value=6 Score=35.18 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.9
Q ss_pred cCceEeeechHHHHHhhccCCCcch
Q 032380 6 WVKVFLFANSKCKRYFHNRLKPSKL 30 (142)
Q Consensus 6 Dgkvf~FcssKC~~~f~~krnPRKl 30 (142)
+|+.|+|||.-|...|. .||-+.
T Consensus 425 ~G~~y~fCs~~C~~~f~--~~Pe~y 447 (511)
T 3u52_A 425 EGERYHFCSDGCCDIFK--HEPEKY 447 (511)
T ss_dssp TTEEEEESSHHHHHHHH--HCHHHH
T ss_pred CCEEEEecChHHHHHHH--HCHHHH
Confidence 89999999999999997 577654
No 11
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=51.09 E-value=5.4 Score=35.24 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=27.0
Q ss_pred cccCceEeeechHHHHHhhccCCCcc--hhHHHHHHHhhh
Q 032380 4 WLWVKVFLFANSKCKRYFHNRLKPSK--LTWTSMYRKQHK 41 (142)
Q Consensus 4 r~Dgkvf~FcssKC~~~f~~krnPRK--l~WT~~yRr~~k 41 (142)
--+|+.|+|||.-|+..|. .||-+ -.|+..-|-.++
T Consensus 419 ~~~G~~y~fcs~~c~~~F~--~~Pery~~~~~~~~~~~~g 456 (491)
T 2inc_A 419 EYEGRLYHFGSEADRWCFQ--IDPERYKNHTNLVDRFLKG 456 (491)
T ss_dssp EETTEEECCSSHHHHHHHH--HSGGGTTTCCCHHHHHHTT
T ss_pred EECCEEEeecCHHHHHHHH--HCHHHHhcccchhhHHhcC
Confidence 3589999999999999997 56765 356655555555
No 12
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=48.48 E-value=4.4 Score=29.21 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=23.0
Q ss_pred cccccCceEeeechHHHHHhhccCCCc
Q 032380 2 LPWLWVKVFLFANSKCKRYFHNRLKPS 28 (142)
Q Consensus 2 ~vr~Dgkvf~FcssKC~~~f~~krnPR 28 (142)
||..||.+|.++|....+.-.+.+|||
T Consensus 35 ~~~~~~~~~~~~s~~~~~~~nl~~~pr 61 (148)
T 3tgv_A 35 FVQNQEGYFVLISHIARHARNLEVNPQ 61 (148)
T ss_dssp EEEETTEEEEEEETTSHHHHHHHHSCE
T ss_pred EEEECCEEEEEECCccHHHHHHHhCCC
Confidence 678889888888888888888999997
No 13
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum}
Probab=33.90 E-value=11 Score=27.39 Aligned_cols=28 Identities=4% Similarity=-0.187 Sum_probs=20.2
Q ss_pred Cccc--ccCceEeeechHHHHHhhccCCCc
Q 032380 1 MLPW--LWVKVFLFANSKCKRYFHNRLKPS 28 (142)
Q Consensus 1 m~vr--~Dgkvf~FcssKC~~~f~~krnPR 28 (142)
|||. .||.++++|+.--++.-.+.+||+
T Consensus 42 ~~~~~~d~~~l~f~~~~~~~k~~nl~~np~ 71 (151)
T 2q9k_A 42 SWVYAKDETTIRFAIEADSLLVKTLADHPV 71 (151)
T ss_dssp CCEEEEETTEEEEEEETTCTHHHHHHHSCC
T ss_pred EEEEEeCCCEEEEEECCCcHHHHHHHhCCc
Confidence 4563 577777777777677777889986
No 14
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua}
Probab=28.22 E-value=16 Score=24.59 Aligned_cols=28 Identities=7% Similarity=-0.005 Sum_probs=15.3
Q ss_pred cccccCceEeeechHHHHHhhccCCCcc
Q 032380 2 LPWLWVKVFLFANSKCKRYFHNRLKPSK 29 (142)
Q Consensus 2 ~vr~Dgkvf~FcssKC~~~f~~krnPRK 29 (142)
|+..||.+|++++....+.-.+..||+=
T Consensus 37 ~~~~~~~l~f~t~~~s~k~~~l~~np~v 64 (128)
T 3db0_A 37 FLHDGLTLYTPSGKELPKTEEVRRNPHV 64 (128)
T ss_dssp CEEETTEEEEEC----CTTCCCCCCCEE
T ss_pred EEecCCEEEEEECCCCHHHHHHHhCCce
Confidence 4454555555555555666668999974
No 15
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis}
Probab=28.21 E-value=18 Score=24.56 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=17.0
Q ss_pred cccccCceEeeechHHHHHhhccCCCc
Q 032380 2 LPWLWVKVFLFANSKCKRYFHNRLKPS 28 (142)
Q Consensus 2 ~vr~Dgkvf~FcssKC~~~f~~krnPR 28 (142)
|+..||.+|++++.-..+.-.+..||+
T Consensus 36 ~~~d~~~l~f~t~~~s~k~~~l~~np~ 62 (131)
T 3f7e_A 36 FAWDGEVLRFTHTTKRQKYRNIKANPA 62 (131)
T ss_dssp CEECSSCEEEEEETTSHHHHHHHHCCE
T ss_pred EEEECCEEEEEECCCCHHHHHHhhCCc
Confidence 555566665555544556666788886
No 16
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=25.15 E-value=19 Score=23.19 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=12.6
Q ss_pred cccccCceEeeechHH
Q 032380 2 LPWLWVKVFLFANSKC 17 (142)
Q Consensus 2 ~vr~Dgkvf~FcssKC 17 (142)
+.+.||+|++|-+-|.
T Consensus 12 mfk~dg~vihF~nPkV 27 (58)
T 3mcb_B 12 MFTNQGTVIHFNNPKV 27 (58)
T ss_dssp EEETTSEEEEEESCEE
T ss_pred EEecCCEEEEecCcce
Confidence 3578999999987654
No 17
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=24.86 E-value=1.3e+02 Score=20.95 Aligned_cols=32 Identities=34% Similarity=0.370 Sum_probs=22.3
Q ss_pred hcHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Q 032380 67 ATLEVIQKRRTEKPEVRDAAREAALREIKERI 98 (142)
Q Consensus 67 ~SLe~I~~kR~qk~e~r~a~re~a~~e~Kek~ 98 (142)
.||++|+.+-..-.|.|.++-.+-+..+.++.
T Consensus 42 ~SleeIqkKLeAAeERRks~EA~~L~~Laekr 73 (87)
T 4f6r_C 42 PSLEEIQKKLEAAEERRKAHFAAMLERLQEKD 73 (87)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999998877666667766665565555443
No 18
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=24.70 E-value=33 Score=26.14 Aligned_cols=19 Identities=5% Similarity=0.048 Sum_probs=15.6
Q ss_pred cCceEeeechHHHHHhhcc
Q 032380 6 WVKVFLFANSKCKRYFHNR 24 (142)
Q Consensus 6 Dgkvf~FcssKC~~~f~~k 24 (142)
.|.+++||+-.|--.|.+.
T Consensus 43 ~g~~~~F~s~~cm~~~~~~ 61 (175)
T 2hpu_A 43 SPAPLFFSQVRDAIAYARG 61 (175)
T ss_dssp CSSEEEESCHHHHHHHHTT
T ss_pred CCcEEEECCHHHHHHHHhc
Confidence 3899999999998776643
No 19
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=22.71 E-value=23 Score=23.40 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=12.5
Q ss_pred cccccCceEeeechHH
Q 032380 2 LPWLWVKVFLFANSKC 17 (142)
Q Consensus 2 ~vr~Dgkvf~FcssKC 17 (142)
+.+.||+|++|-+-|.
T Consensus 12 mfk~dg~vihF~nPkV 27 (66)
T 3lkx_A 12 MFTNQGTVIHFNNPKV 27 (66)
T ss_dssp EEETTSEEEEEESCEE
T ss_pred EEecCCEEEEecCcce
Confidence 3578999999987653
No 20
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP}
Probab=21.95 E-value=49 Score=23.58 Aligned_cols=29 Identities=3% Similarity=-0.067 Sum_probs=21.5
Q ss_pred ccCc-eEeeechHHHHHhhccCCCcchhHH
Q 032380 5 LWVK-VFLFANSKCKRYFHNRLKPSKLTWT 33 (142)
Q Consensus 5 ~Dgk-vf~FcssKC~~~f~~krnPRKl~WT 33 (142)
.||. +++|++....+.-.+..||+.+.++
T Consensus 39 ~~g~~l~f~t~~~s~K~~~l~~np~~v~l~ 68 (160)
T 2qea_A 39 DAPGAIWFITAKGTDLAKGVAAGPQPAQFV 68 (160)
T ss_dssp TSCSCEEEEEETTSHHHHHTSSSCEEEEEE
T ss_pred CCCCEEEEEECCCCHHHHHHHhCCceEEEE
Confidence 4787 7777777778777899999734443
No 21
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0
Probab=21.79 E-value=25 Score=24.17 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=17.6
Q ss_pred cccccCceEeeechHHHHHhhccCCCc
Q 032380 2 LPWLWVKVFLFANSKCKRYFHNRLKPS 28 (142)
Q Consensus 2 ~vr~Dgkvf~FcssKC~~~f~~krnPR 28 (142)
|+..|+.++++++....+.-.+..||+
T Consensus 35 ~~~~~~~l~f~t~~~s~k~~~l~~np~ 61 (139)
T 3ec6_A 35 FFHEDFVLYVATDRQSKKITDIENNPN 61 (139)
T ss_dssp CEEETTEEEEEEETTCHHHHHHHHCCE
T ss_pred EEEeCCEEEEEECCCCHHHHHHHhCCc
Confidence 444456666556655666667888996
No 22
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis}
Probab=21.35 E-value=21 Score=25.41 Aligned_cols=27 Identities=4% Similarity=-0.124 Sum_probs=19.1
Q ss_pred cccccCceEeeechHHHHHhhccCCCc
Q 032380 2 LPWLWVKVFLFANSKCKRYFHNRLKPS 28 (142)
Q Consensus 2 ~vr~Dgkvf~FcssKC~~~f~~krnPR 28 (142)
|+..||.+++|++....+.-.+..||+
T Consensus 46 ~~~d~~~l~f~t~~~s~K~~~l~~np~ 72 (155)
T 2iab_A 46 YLWDGETFLVATPAASPTGRNLSETGR 72 (155)
T ss_dssp CEECSSCEEEEEETTSHHHHHHHHHCE
T ss_pred EEEECCEEEEEECCCCHHHHHHhhCCc
Confidence 454567777777766666667888887
No 23
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=21.08 E-value=26 Score=21.74 Aligned_cols=11 Identities=18% Similarity=0.667 Sum_probs=9.7
Q ss_pred eeechHHHHHh
Q 032380 11 LFANSKCKRYF 21 (142)
Q Consensus 11 ~FcssKC~~~f 21 (142)
.|||..|...|
T Consensus 38 rFCS~sCR~~y 48 (49)
T 2l8e_A 38 RFCSMTCAKRY 48 (49)
T ss_dssp SSCSHHHHHHH
T ss_pred ccCCHHHHhhh
Confidence 69999998876
No 24
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1
Probab=20.60 E-value=28 Score=24.61 Aligned_cols=26 Identities=4% Similarity=0.000 Sum_probs=18.9
Q ss_pred cccc-CceEeeechHHHHHhhccCCCc
Q 032380 3 PWLW-VKVFLFANSKCKRYFHNRLKPS 28 (142)
Q Consensus 3 vr~D-gkvf~FcssKC~~~f~~krnPR 28 (142)
+..| |.+++|++....+.=.+..||+
T Consensus 52 ~~~~~g~~~f~t~~~s~k~~nl~~np~ 78 (157)
T 1vl7_A 52 VIDDAKNIYIYVSGLAVHTKNIEANPL 78 (157)
T ss_dssp EECTTCCEEEEECTTSHHHHHHHHCCE
T ss_pred EEcCCCCEEEEEeCccHHHHHHHhCCc
Confidence 3444 8888888877777777888985
Done!