RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 032383
         (142 letters)



>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
           thermophilus [TaxId: 274]}
          Length = 118

 Score = 75.9 bits (187), Expect = 2e-19
 Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 11/104 (10%)

Query: 39  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 98
              G+   +G+      +  K+PNSA+RK A+V+ + +G ++ A++P +G  + ++E+  
Sbjct: 22  ALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVR-LTSGYEVTAYIPGEG--HNLQEHSV 78

Query: 99  VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
           VLI     +G  V D+PGVR+ +V+  GV   A  K++K+  RS
Sbjct: 79  VLI-----RGGRVKDLPGVRYHIVR--GVYDAAGVKDRKKS-RS 114


>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit
          TTHA0048 {Thermus thermophilus [TaxId: 274]}
          Length = 116

 Score = 26.7 bits (59), Expect = 0.64
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 50 VLEKIGIEAKQPNSAIRKCARVQLIKNG 77
           LE  G+EA+ P +AIR   +V L+   
Sbjct: 44 FLELQGLEARSPRAAIRGAFQVGLLPED 71


>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 25.2 bits (55), Expect = 3.4
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD 113
           QP+ ++R   +          AA +  +G       NDEV+I     +G  + D
Sbjct: 372 QPSLSVRIWNK--TPDEFLLRAAELTREGLGLPAYYNDEVIIPALVSRGLTLED 423


>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 135

 Score = 23.7 bits (51), Expect = 8.3
 Identities = 6/23 (26%), Positives = 9/23 (39%)

Query: 55 GIEAKQPNSAIRKCARVQLIKNG 77
           I A      +R+  R  LI + 
Sbjct: 68 DIGAYGFKDILREALRFGLIGDM 90


>d1m6ka_ e.3.1.1 (A:) Class D beta-lactamase {Escherichia coli,
           OXA-1 [TaxId: 562]}
          Length = 251

 Score = 24.0 bits (51), Expect = 9.3
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 82  AFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122
            F   +GC    + +    IA F +   A    P   FK+ 
Sbjct: 11  LFEGTEGCFLLYDASTNAEIAQFNKAKCATQMAPDSTFKIA 51


>d1iq8a4 d.17.6.1 (A:361-505) Archaeosine tRNA-guanine
           transglycosylase, C2 domain {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 145

 Score = 23.6 bits (51), Expect = 9.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 72  QLIKNGKKIAAFVPNDGCL 90
           Q+  NGK++A    +DG L
Sbjct: 111 QVKVNGKRLATVRADDGLL 129


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0679    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,644
Number of extensions: 23637
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 8
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.4 bits)