BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032384
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT08|PSDE_ARATH 26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis
thaliana GN=RPN11 PE=2 SV=1
Length = 308
Score = 279 bits (713), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 134/142 (94%), Positives = 137/142 (96%)
Query: 1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
+MLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD
Sbjct: 167 IMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 226
Query: 61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
GLTL RFD HSKTNEQTVQEML+LA KYNKAVQEEDEL PEKLAI NVGRQDAKKHLEEH
Sbjct: 227 GLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAKKHLEEH 286
Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
VSNLMSSNIVQTLGTMLDTV+F
Sbjct: 287 VSNLMSSNIVQTLGTMLDTVVF 308
>sp|O35593|PSDE_MOUSE 26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus
GN=Psmd14 PE=1 SV=2
Length = 310
Score = 222 bits (566), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/142 (74%), Positives = 119/142 (83%)
Query: 1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYRKNELE+KMLLNLHKK W +
Sbjct: 168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227
Query: 61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
GLTL + H K NE V+EML LA YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct: 228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287
Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
V LM+SNIVQ L MLDTV+F
Sbjct: 288 VDVLMTSNIVQCLAAMLDTVVF 309
>sp|O00487|PSDE_HUMAN 26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens
GN=PSMD14 PE=1 SV=1
Length = 310
Score = 222 bits (566), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 106/142 (74%), Positives = 119/142 (83%)
Query: 1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYRKNELE+KMLLNLHKK W +
Sbjct: 168 MVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWME 227
Query: 61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
GLTL + H K NE V+EML LA YNKAV+EED++ PE+LAI NVG+QD K+HLEEH
Sbjct: 228 GLTLQDYSEHCKHNESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEH 287
Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
V LM+SNIVQ L MLDTV+F
Sbjct: 288 VDVLMTSNIVQCLAAMLDTVVF 309
>sp|Q9V3H2|PSDE_DROME 26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila
melanogaster GN=Rpn11 PE=1 SV=1
Length = 308
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 98/142 (69%), Positives = 120/142 (84%)
Query: 1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
++LGQEPRQTTSNLGHL KPS+QALIHGLNRHYYSI+INYRKNELE+KMLLNLHKK W D
Sbjct: 166 LVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRKNELEQKMLLNLHKKSWKD 225
Query: 61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
GLTL ++ H NE TV EML+LA YNK++++E+++ PE+LAI NVG+QD K+HLEE
Sbjct: 226 GLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLEDEEKMTPEQLAIKNVGKQDPKRHLEEK 285
Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
V +M +NIVQ LG MLDT++F
Sbjct: 286 VDKVMQNNIVQCLGAMLDTIVF 307
>sp|Q86IJ1|PSDE_DICDI 26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium
discoideum GN=psmD14 PE=3 SV=1
Length = 306
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/137 (61%), Positives = 108/137 (78%)
Query: 6 EPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLH 65
EPRQ TSNLGHL PSIQALIHGLNR+YYSIAINYRKNELE+KMLLNLHKKKWT+GL +
Sbjct: 170 EPRQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRKNELEQKMLLNLHKKKWTEGLIVD 229
Query: 66 RFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLM 125
+FD H ++NE+ + +L L +Y K++Q+ED++ PEK ++ VG+ D K+HL V LM
Sbjct: 230 KFDTHEQSNEKQINNLLELTKQYQKSIQDEDKIEPEKKEVSAVGKLDPKRHLISDVHTLM 289
Query: 126 SSNIVQTLGTMLDTVIF 142
++N+V+ L MLDTV F
Sbjct: 290 ANNVVRVLTVMLDTVTF 306
>sp|P41878|RPN11_SCHPO 26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpn11 PE=1 SV=2
Length = 308
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 102/142 (71%)
Query: 1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
+M+GQEPRQTTSNLGH+NKPSIQALIHGL RHYYS+ INY+K ELEE MLLNLHK+ W
Sbjct: 167 LMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAH 226
Query: 61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
GL L F+ ++ N ++ +M +L+ +Y + VQ E L PE+L I VG+QD KKHL+
Sbjct: 227 GLLLENFNSAAEKNHASIDKMKSLSEQYTERVQNEVTLSPEQLRIQYVGKQDPKKHLDAE 286
Query: 121 VSNLMSSNIVQTLGTMLDTVIF 142
V + +NI L MLD+V F
Sbjct: 287 VQKCIDNNISSMLACMLDSVAF 308
>sp|O76577|PSDE_CAEEL 26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis
elegans GN=rpn-11 PE=1 SV=1
Length = 312
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 102/139 (73%)
Query: 1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTD 60
M L QEPRQTTSNLGHL KPSIQALIHGLNRHYYSI I YR ++LE+KMLLNL+K W D
Sbjct: 170 MALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYRTHDLEQKMLLNLNKLSWMD 229
Query: 61 GLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEH 120
+++ + + N++ ++ ML LA Y KA+++E + ++LAI NVG+ D K+H+ +
Sbjct: 230 AVSVENYSKCGEQNKEHLKAMLKLAKNYKKALEDEKNMTDQELAIKNVGKMDPKRHIADE 289
Query: 121 VSNLMSSNIVQTLGTMLDT 139
VS +++ NIVQ+L M+ T
Sbjct: 290 VSKMLNDNIVQSLAGMMAT 308
>sp|Q750E9|RPN11_ASHGO 26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN11 PE=3 SV=1
Length = 311
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 91/136 (66%)
Query: 5 QEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTL 64
QEPRQTTSN+G LNKP+IQ+LIHGLNRHYYS+ I+Y K E ML+NLHK++W GL +
Sbjct: 173 QEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHKTSAELNMLMNLHKEQWQSGLKM 232
Query: 65 HRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNL 124
H + + N + ++ + +A +Y K ++EE EL ++L VG+QD KKHL E +
Sbjct: 233 HDYKEKERINLEATKKSVRIAEQYTKRIEEEKELTEDELKTRYVGKQDPKKHLSETAERV 292
Query: 125 MSSNIVQTLGTMLDTV 140
+ NIV L +++V
Sbjct: 293 LEENIVSVLTAGVNSV 308
>sp|P43588|RPN11_YEAST 26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN11 PE=1 SV=1
Length = 306
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 91/135 (67%)
Query: 6 EPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLH 65
EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y K E KML+NLHK++W GL ++
Sbjct: 169 EPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMY 228
Query: 66 RFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLM 125
++ ++N + M+ +A +Y+K ++EE EL E+L VGRQD KKHL E +
Sbjct: 229 DYEEKEESNLAATKSMVKIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETL 288
Query: 126 SSNIVQTLGTMLDTV 140
+NIV L +++V
Sbjct: 289 ENNIVSVLTAGVNSV 303
>sp|Q6FKS1|RPN11_CANGA 26S proteasome regulatory subunit RPN11 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN11 PE=3 SV=1
Length = 306
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 88/136 (64%)
Query: 5 QEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTL 64
QEPRQTTSN G +NK +IQALIHGLNRHYYS+ I+Y K E KMLLNLHK++W GL +
Sbjct: 168 QEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHKTPAETKMLLNLHKEQWQSGLKM 227
Query: 65 HRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNL 124
+ N + + M+ +A +Y+K ++EE EL E+L VG+QD KKHL + N
Sbjct: 228 QDYQEKETENLEATKRMVAVAQQYSKRIEEEKELSEEELKTRYVGKQDPKKHLAKTAENT 287
Query: 125 MSSNIVQTLGTMLDTV 140
+ N V L ++++
Sbjct: 288 LEENTVSVLTAGVNSI 303
>sp|Q8SQY3|RPN11_ENCCU 26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN11 PE=1 SV=1
Length = 294
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 82/141 (58%), Gaps = 7/141 (4%)
Query: 2 MLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDG 61
+LG EPRQ TSN+G+L P++ ++IHGLN+HYYS I RKN+ E+KMLLNLH+K W D
Sbjct: 159 VLGGEPRQVTSNIGYLKTPTLISIIHGLNKHYYSFNITCRKNDFEQKMLLNLHRKTWADN 218
Query: 62 LTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHV 121
L L D SK +E L L Y KA +EE L + +A VGR D ++ L E
Sbjct: 219 LKLG--DVRSKR-----EEALKLIESYGKAFEEEKNLAGKNPDMAKVGRIDYRRRLLEKC 271
Query: 122 SNLMSSNIVQTLGTMLDTVIF 142
+ N + +L + IF
Sbjct: 272 EESIMENTIYSLLYSIHRYIF 292
>sp|P41883|YPT5_CAEEL Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans
GN=F37A4.5 PE=3 SV=1
Length = 319
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 6 EPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLH 65
EPRQTTSNLGHL KPS+ +++HGL YYS+ + YR E+KML+ L+KK W D L +
Sbjct: 176 EPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYRMGSNEQKMLMCLNKKSWYDQLNMS 235
Query: 66 RFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELP------PEKLAIANVGRQDAKKHLEE 119
+ K E+ + + L +NK + E E P + + G+ +AK+ L+
Sbjct: 236 TYSELEKKQEEKFKSINKLIAVFNKDIDEVKEKPIADKKGKTQEEVKKFGKINAKQQLQM 295
Query: 120 HVSNLMSSNIVQTLGTMLD 138
S+L++ ++ L M++
Sbjct: 296 ITSSLLNDSLCHQLTAMIN 314
>sp|Q5BBF1|CSN5_EMENI COP9 signalosome complex subunit 5 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rri1 PE=1 SV=2
Length = 335
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 32 HYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKA 91
HYYS+ ++ K+ L+ ++L L K W L+ T + ++ML+L+ K +
Sbjct: 217 HYYSLEVSLFKSALDTEILSLLWNKYWVATLSQSPL---FTTRDYGSKQMLDLSQKTRRV 273
Query: 92 VQEEDELPPEKLAIANVGRQ-------DAKKHLEEHVSNLMSSNI 129
+ + PP A V Q D ++ + E V L+++ +
Sbjct: 274 ARGIESNPPRGGAPTQVRDQQLERVVKDGQRIVSEEVKGLLAAEV 318
>sp|A7N512|DDL_VIBHB D-alanine--D-alanine ligase OS=Vibrio harveyi (strain ATCC BAA-1116
/ BB120) GN=ddl PE=3 SV=1
Length = 329
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 69 CHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIA 106
C+S TN+Q+V + +N A Y++ V E + P +L +A
Sbjct: 170 CYSVTNKQSVSQAVNDAFGYSEQVLVEKSVKPRELEVA 207
>sp|B0CEZ1|CH602_ACAM1 60 kDa chaperonin 2 OS=Acaryochloris marina (strain MBIC 11017)
GN=groL2 PE=3 SV=1
Length = 543
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 2 MLGQEPR-----QTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKK 56
M+GQ R TT+ + N+ +QA + R +Y K +L+E++
Sbjct: 315 MMGQARRITITKDTTTLVAEGNEADVQARCEQIRRQMDETESSYDKEKLQERL------A 368
Query: 57 KWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDA 113
K G+ + + ++T + + L A+ KA EE +P +A++G Q A
Sbjct: 369 KLAGGVAVIKVGAATETEMKDRKLRLEDAINSTKAAVEEGIVPGGGTTLAHLGPQLA 425
>sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica GN=DCL-2 PE=3 SV=1
Length = 1451
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 90 KAVQEEDELP-PEKLAIANVGRQ----DAKKHLEEHVSNLMSSNIVQT 132
+A++ + L PE+L + + G + DAK HL+ VS L S VQT
Sbjct: 575 EAIENSEALDYPEELRVESTGARLTINDAKSHLQHFVSTLASRKFVQT 622
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum
GN=csn5 PE=1 SV=1
Length = 332
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 31 RHYYSIAINYRKNELEEKMLLNLHKKKWTDGLT 63
+ YYS+ I Y K+ L++++L L K W + L+
Sbjct: 218 KQYYSLEITYFKSSLDQQLLDKLWNKYWVNTLS 250
>sp|O70418|RN112_RAT RING finger protein 112 OS=Rattus norvegicus GN=Rnf112 PE=2 SV=1
Length = 631
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 58 WTDGLTLHRFDCHSKTNEQTVQEMLNLA---VKYNKAVQEEDELPPEKLAIANVGRQDAK 114
W++G + R D T +Q QE+ NL+ K + DE+ + + V + AK
Sbjct: 408 WSEGRAMARGDRRLLTGQQLAQEIKNLSGWMGKSGPSFSSPDEMAAQLHDLRKV--EAAK 465
Query: 115 KHLEEHV--SNLMSSNIVQTLGTMLDTV 140
K EE+V ++ + I L + DT+
Sbjct: 466 KEFEEYVRQQDIATKRIFSALRVLPDTM 493
>sp|Q7V1I2|SYL_PROMP Leucine--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=leuS PE=3 SV=1
Length = 858
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 26 IHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHR 66
I+G R ++ IN +E++EK L+ + KKW D T+ +
Sbjct: 805 INGKVRDKINVEINISDDEIKEKTLIRPNVKKWIDNKTIRK 845
>sp|P20806|7LESS_DROVI Protein sevenless OS=Drosophila virilis GN=sev PE=3 SV=1
Length = 2594
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 18/141 (12%)
Query: 5 QEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR--KNELEEKMLLNLHKKKWTDGL 62
Q+ R L ++PSI + + L +A R L + + L + W + L
Sbjct: 2166 QKRRHRAKKLLQQSRPSIWSNLSALQTQQQLLAARSRTFSMSLSDADIALLPQINW-NRL 2224
Query: 63 TLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANV--GRQDAKKHLEEH 120
TL RF E Y +Q EDE P+++AI ++ G + + L+E
Sbjct: 2225 TLLRFLGSGAFGEV-----------YEGQLQAEDEAQPQRVAIKSLRKGASEFAELLQEA 2273
Query: 121 --VSNLMSSNIVQTLGTMLDT 139
+SN NIV +G DT
Sbjct: 2274 QLMSNFKHENIVCLIGICCDT 2294
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 1 MMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKK 56
+ LG +P Q T + SI +L HG H Y I N R N + L++++ K
Sbjct: 303 IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSK 358
>sp|Q8Q0L5|COOS1_METMA Carbon monoxide dehydrogenase 1 OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=cooS1 PE=3 SV=1
Length = 628
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 6 EPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLH 65
EP+++T NLG L+ + +IHG + I E+ LL L K+K G+ +
Sbjct: 243 EPKKSTVNLGVLSHDKVNVIIHG----HEPILSEMIVQAAEDPELLELAKEKGAAGINVA 298
Query: 66 RFDC 69
C
Sbjct: 299 GICC 302
>sp|Q96DY5|RN112_MOUSE RING finger protein 112 OS=Mus musculus GN=Rnf112 PE=2 SV=1
Length = 654
Score = 29.3 bits (64), Expect = 8.2, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 58 WTDGLTLHRFDCHSKTNEQTVQEMLNLA---VKYNKAVQEEDELPPEKLAIANVGRQDAK 114
W++G + R D T +Q QE+ NL+ K + DE+ + + V + AK
Sbjct: 431 WSEGRAVARGDRRLLTGQQLAQEIKNLSGWMGKTGPSFNSPDEMAAQLHDLRKV--EAAK 488
Query: 115 KHLEEHV--SNLMSSNIVQTLGTMLDTV 140
K EE+V ++ + I L + DT+
Sbjct: 489 KEFEEYVRQQDIATKRIFSALRVLPDTM 516
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2
SV=1
Length = 332
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 31 RHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNK 90
+ YY++ + Y K+ L+ K+L L K W + L+ ++ E T ++ +L+ K +
Sbjct: 217 KQYYALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA---EYTTGQVFDLSEKLEQ 273
Query: 91 A------------VQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 138
+ ++ D +KLA A +D+ K E + LMS I L ++
Sbjct: 274 SEAQLGRGSFMLGLESHDRKSEDKLAKAT---RDSCKTTIEAIHGLMSQVIKDKLFNQIN 330
Query: 139 TV 140
T
Sbjct: 331 TF 332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,840,359
Number of Sequences: 539616
Number of extensions: 1843805
Number of successful extensions: 6378
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 6354
Number of HSP's gapped (non-prelim): 75
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)