Query 032384
Match_columns 142
No_of_seqs 101 out of 133
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 13:23:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1555 26S proteasome regulat 100.0 1.9E-37 4.1E-42 264.3 9.2 139 1-141 177-316 (316)
2 cd08069 MPN_RPN11_CSN5 Mov34/M 99.9 4.9E-24 1.1E-28 177.1 5.6 111 6-119 153-268 (268)
3 PF13012 MitMem_reg: Maintenan 99.6 3.5E-16 7.7E-21 113.3 -0.0 109 5-128 1-115 (115)
4 cd08065 MPN_eIF3h Mpr1p, Pad1p 95.1 0.11 2.4E-06 43.3 7.7 47 13-59 143-189 (266)
5 PF05814 DUF843: Baculovirus p 61.5 6.7 0.00015 28.4 2.1 35 93-129 47-81 (83)
6 KOG1554 COP9 signalosome, subu 49.1 5.8 0.00013 35.0 0.1 33 31-63 219-251 (347)
7 PF15027 DUF4525: Domain of un 40.0 98 0.0021 24.4 5.6 57 74-135 40-97 (138)
8 KOG3869 Uncharacterized conser 37.0 41 0.00089 31.0 3.5 45 52-98 5-50 (450)
9 COG1460 Uncharacterized protei 36.1 66 0.0014 24.5 4.0 34 92-126 25-62 (114)
10 COG3590 PepO Predicted metallo 31.2 63 0.0014 31.1 3.8 45 71-115 350-404 (654)
11 KOG0005 Ubiquitin-like protein 30.7 54 0.0012 22.9 2.5 28 85-112 23-50 (70)
12 PF13210 DUF4018: Domain of un 30.4 18 0.00039 29.6 0.2 19 5-23 146-167 (192)
13 PF13887 MRF_C1: Myelin gene r 28.9 63 0.0014 20.1 2.3 22 73-94 11-32 (36)
14 PF06518 DUF1104: Protein of u 28.1 65 0.0014 23.4 2.7 22 97-119 5-26 (93)
15 PF11867 DUF3387: Domain of un 27.6 63 0.0014 27.6 3.0 42 64-105 207-250 (335)
16 PF07152 YaeQ: YaeQ protein; 25.6 55 0.0012 26.4 2.1 25 29-53 17-44 (174)
17 PF04837 MbeB_N: MbeB-like, N- 25.2 48 0.001 21.9 1.5 26 78-103 1-26 (52)
18 cd07661 BAR_ICA69 The Bin/Amph 23.6 3.5E+02 0.0075 22.6 6.5 60 73-135 13-78 (204)
19 PF08629 PDE8: PDE8 phosphodie 23.1 37 0.0008 22.5 0.6 9 5-13 24-32 (52)
20 PHA02609 uvsW.1 hypothetical p 21.7 1.1E+02 0.0023 21.9 2.7 32 76-107 24-55 (76)
21 COG4700 Uncharacterized protei 21.1 81 0.0018 26.8 2.4 24 109-132 68-91 (251)
22 PF14577 SEO_C: Sieve element 20.7 63 0.0014 27.4 1.7 55 72-133 41-95 (235)
23 PF07700 HNOB: Heme NO binding 20.7 47 0.001 25.5 0.8 22 20-41 143-164 (171)
24 COG2605 Predicted kinase relat 20.6 53 0.0012 29.2 1.2 80 34-113 49-152 (333)
25 PF11637 UvsW: ATP-dependant D 20.0 1.3E+02 0.0027 20.3 2.6 31 76-106 5-35 (54)
No 1
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-37 Score=264.25 Aligned_cols=139 Identities=40% Similarity=0.543 Sum_probs=135.4
Q ss_pred CCCCCCCcccccccccccc-hhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCccccCcccchhhhhhhhHHHHH
Q 032384 1 MMLGQEPRQTTSNLGHLNK-PSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQ 79 (142)
Q Consensus 1 ~m~gqEPRQTTSNiGhL~K-Psi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~~gL~l~~f~~~~~~N~~~~~ 79 (142)
++.|+||||||||+||+.+ ||+|+.+|||| ||||+.|.||+++.|+.|++|+|+++|.++ +..+|.++.+.|+..+.
T Consensus 177 ~~~~~eprqtts~~~~m~~~~s~q~~~~g~n-~y~~~ei~~~v~~~~~~~~~nv~~~s~~~~-~~~~y~e~~k~~~~~~~ 254 (316)
T KOG1555|consen 177 ISPGGEPRQTTSNGGHMDMQESLQEDIHGLN-RYYRIEIPLHVLPYEQLMLLNVPLKSWKSL-QDVLYEEKLKAYLQSVP 254 (316)
T ss_pred ccCCCCCccccccccccccchhHHhHhhccC-ceEEEEeeEEechhhhhchhccchhhhhhc-chhhHHHHHHHhhhhhh
Confidence 3678999999999999999 99999999999 999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q 032384 80 EMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVI 141 (142)
Q Consensus 80 ~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL~e~v~~lm~~Nivq~l~~ml~~~~ 141 (142)
.|.+|++.|++.+++|+.+++.+++|.++|++|||+||++.+.+.+.+||+|+|++|+++++
T Consensus 255 ~~~sL~~~~N~~~~~~k~~~~~~~~i~d~~~~~~kq~l~~~v~~~~~~nl~~~l~~~~~~~~ 316 (316)
T KOG1555|consen 255 SMKSLSKVYNKVCDVCKQMSDFLLMIEDVGEQNPKQHLKEAVTELLSENLVQELGSMERRVS 316 (316)
T ss_pred HHHhHHHHHHHHHHHHhhccHHHHHHHHhhhhhHHHHhHHHhhhhcccchhhcchhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999998763
No 2
>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5. This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations i
Probab=99.89 E-value=4.9e-24 Score=177.13 Aligned_cols=111 Identities=52% Similarity=0.788 Sum_probs=107.6
Q ss_pred CCcccccccccccchhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCccccCcccchhhhhhhhHHHHHHHHHHH
Q 032384 6 EPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEMLNLA 85 (142)
Q Consensus 6 EPRQTTSNiGhL~KPsi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~~gL~l~~f~~~~~~N~~~~~~m~~La 85 (142)
|||+||||.|++.+|+++ ..+|++++||+|+|.||++++|+.||.+|+++.|.++|.+.+|..++ |...++.|.+|+
T Consensus 153 ~~~~~~s~~~~~~~~~~~-~~~~~~~~y~~l~i~~~~s~l~~~~L~~l~~~~w~~~l~~~~~~~~~--~~~~~~~~~~l~ 229 (268)
T cd08069 153 EPRQTTSNIGHLPKPKIE-DFGGHNKQYYSLPIEYFKSSLDRKLLLNLWNKYWVNTLSLSPLLENS--NEYTIKQILDLA 229 (268)
T ss_pred CcccCccccCccCcHHHH-HhCchhcEEEEeeeEEecCHHHHHHHHHHHHHhHHHHhhCCchhhhh--hHHHHHHHHHHH
Confidence 799999999999999999 99999999999999999999999999999999999999999998887 899999999999
Q ss_pred HHHHHHhHhhhCCChhhHhhhhcCccC-----hHHHHHH
Q 032384 86 VKYNKAVQEEDELPPEKLAIANVGRQD-----AKKHLEE 119 (142)
Q Consensus 86 ~~Y~k~i~eE~~~t~eql~i~~VGK~D-----pKkhL~e 119 (142)
++|++.+.+|..++++++..+++||+| ||+|+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (268)
T cd08069 230 EKLEKAEQQEERLTGEELDIANVGKLDKARDSSKIHLEE 268 (268)
T ss_pred HHHHHHHhhhhccChhhhcccchhhhhhccccchhhhcC
Confidence 999999999999999999999999999 9999873
No 3
>PF13012 MitMem_reg: Maintenance of mitochondrial structure and function; PDB: 2O96_B 2O95_A.
Probab=99.56 E-value=3.5e-16 Score=113.25 Aligned_cols=109 Identities=25% Similarity=0.373 Sum_probs=13.5
Q ss_pred CCCcccccccccccchhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCccccCcccch----hhhhhhhHHHHHH
Q 032384 5 QEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRF----DCHSKTNEQTVQE 80 (142)
Q Consensus 5 qEPRQTTSNiGhL~KPsi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~~gL~l~~f----~~~~~~N~~~~~~ 80 (142)
+|||++ ++.+++||++++||| +|. +..+-+++||.+||++.|..+.-++++ ...+..+...+.+
T Consensus 1 eEaEri----------gv~~l~~~~~~~~~s-~~~-~~l~~~~~al~~L~~~l~~i~~Yl~~v~~g~~~~d~~i~r~l~~ 68 (115)
T PF13012_consen 1 EEAERI----------GVDHLARGLGDHYYS-SLS-SQLENEQNALKMLHKRLWQILDYLEDVISGEIPPDHEILRQLQD 68 (115)
T ss_dssp SHHHHH----------HHHHHHHH--S-----------------------------------------------------
T ss_pred CchHHH----------HHHHHHccCCCcccc-HHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcCCCchhHHHHHHH
Confidence 478888 899999999999999 999 999999999999999999999999999 8888889999999
Q ss_pred HHHHHHHH-HHHhHhhhCC-ChhhHhhhhcCccChHHHHHHHHHHHHHHh
Q 032384 81 MLNLAVKY-NKAVQEEDEL-PPEKLAIANVGRQDAKKHLEEHVSNLMSSN 128 (142)
Q Consensus 81 m~~La~~Y-~k~i~eE~~~-t~eql~i~~VGK~DpKkhL~e~v~~lm~~N 128 (142)
++.++..| .+.+++|... +.+.+.|.++|+++|+.| .+.++++.|
T Consensus 69 l~~~lp~~~~~~~~~~~~~~~~D~l~v~yL~~l~k~~~---~l~e~l~~~ 115 (115)
T PF13012_consen 69 LLSSLPKYDPEEFEEEFNSEINDVLMVSYLAKLTKKQH---ALNELLNNN 115 (115)
T ss_dssp --------------------------------------------------
T ss_pred HHHhcccccHHHHHHHHHhhchHHHHHHHHHHHhHHHH---HHHHHHhcC
Confidence 99999999 9999888887 778999999999999999 566666554
No 4
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=95.14 E-value=0.11 Score=43.34 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=42.4
Q ss_pred ccccccchhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCcc
Q 032384 13 NLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWT 59 (142)
Q Consensus 13 NiGhL~KPsi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~ 59 (142)
--|+++++++++.-.+.+..|+.|||..|.+.|++.||..|....=.
T Consensus 143 ~~~~~~~~~l~~~~~~~~~if~eiPv~i~n~~l~~~~L~~l~~~~~~ 189 (266)
T cd08065 143 KEGKFSTESLREANLTFSNIFEEIPVVIRNSHLVNALLSELEEDSPS 189 (266)
T ss_pred hcCCcCHHHHHHhcCchhcEEEEEEEEEEchHHHHHHHHhcccCCCc
Confidence 34899999999999999999999999999999999999999775443
No 5
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=61.45 E-value=6.7 Score=28.41 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=30.1
Q ss_pred HhhhCCChhhHhhhhcCccChHHHHHHHHHHHHHHhH
Q 032384 93 QEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNI 129 (142)
Q Consensus 93 ~eE~~~t~eql~i~~VGK~DpKkhL~e~v~~lm~~Ni 129 (142)
..|. ++++|...++-+++-||||++.-|.+++.|-
T Consensus 47 kteS--~~~dL~t~k~K~~KKK~~ln~afDAiLNKN~ 81 (83)
T PF05814_consen 47 KTES--TPQDLQTEKAKSIKKKRDLNDAFDAILNKNT 81 (83)
T ss_pred CCCC--cHHHHhhhhhhhHHHHHHHHHHHHHHHhccC
Confidence 4444 6899999999999999999999999998773
No 6
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.15 E-value=5.8 Score=35.04 Aligned_cols=33 Identities=39% Similarity=0.713 Sum_probs=29.9
Q ss_pred CccceeeeeeeCCHHHHHHHhhccccCccccCc
Q 032384 31 RHYYSIAINYRKNELEEKMLLNLHKKKWTDGLT 63 (142)
Q Consensus 31 r~YYSi~I~yrkn~lEq~MLlnLhKk~W~~gL~ 63 (142)
..|||+.|+|=|..++-+.|--|--+.|...|.
T Consensus 219 k~yysl~isyfks~ld~kll~~Lwnkywv~Tls 251 (347)
T KOG1554|consen 219 KQYYSLEISYFKSSLDMKLLELLWNKYWVRTLS 251 (347)
T ss_pred EEeeccchhhhhhhhhHHHHHHHHhhhhhcccc
Confidence 469999999999999999999999999986654
No 7
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=40.04 E-value=98 Score=24.35 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhCCChhh-HhhhhcCccChHHHHHHHHHHHHHHhHHHHHHH
Q 032384 74 NEQTVQEMLNLAVKYNKAVQEEDELPPEK-LAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGT 135 (142)
Q Consensus 74 N~~~~~~m~~La~~Y~k~i~eE~~~t~eq-l~i~~VGK~DpKkhL~e~v~~lm~~Nivq~l~~ 135 (142)
..+--+.+++|++.|-|++.||.+-..+- -.-.-.|--|=||-+. .+-++|.|.|..
T Consensus 40 s~~LR~QILdLSkrYVKaLAeEn~~~~dgp~~~smagYaDLKktiA-----VLLddiLqRl~k 97 (138)
T PF15027_consen 40 SAELREQILDLSKRYVKALAEENKNVVDGPYGASMAGYADLKKTIA-----VLLDDILQRLVK 97 (138)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhhHHHHHHhhhhh-----hhhhHHHHHHHH
Confidence 34555789999999999999998654322 1011112225555443 355666666653
No 8
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=41 Score=30.98 Aligned_cols=45 Identities=24% Similarity=0.359 Sum_probs=35.4
Q ss_pred hcc-ccCccccCcccchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhCC
Q 032384 52 NLH-KKKWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDEL 98 (142)
Q Consensus 52 nLh-Kk~W~~gL~l~~f~~~~~~N~~~~~~m~~La~~Y~k~i~eE~~~ 98 (142)
.|+ |++|.-++ |.+.+.+-+.-.....++.+| ..|.+.|.+|...
T Consensus 5 DLNlkKsWhp~~-mkN~ekVWkaEq~~k~E~Kkl-E~lr~eI~eER~r 50 (450)
T KOG3869|consen 5 DLNLKKSWHPEL-MKNQEKVWKAEQKHKAEQKKL-EELRKEINEERAR 50 (450)
T ss_pred ccccccccChhh-hcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 466 89999766 777777777777777777787 8899999998865
No 9
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.09 E-value=66 Score=24.53 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=24.0
Q ss_pred hHhhhCCChhhH-hh---hhcCccChHHHHHHHHHHHHH
Q 032384 92 VQEEDELPPEKL-AI---ANVGRQDAKKHLEEHVSNLMS 126 (142)
Q Consensus 92 i~eE~~~t~eql-~i---~~VGK~DpKkhL~e~v~~lm~ 126 (142)
+.++.++|-+|- ++ +.|+|+||.+ ..+.+++|++
T Consensus 25 ~~~~~eL~y~~~~al~y~~kFakldpe~-a~e~veEL~~ 62 (114)
T COG1460 25 VEREEELTYEQREALEYAEKFAKLDPEK-ARELVEELLS 62 (114)
T ss_pred hcccccchHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Confidence 356667877663 33 6789999876 6777888775
No 10
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=31.19 E-value=63 Score=31.12 Aligned_cols=45 Identities=22% Similarity=0.420 Sum_probs=32.8
Q ss_pred hhhhHHHHHHHH-HHHHHHHHHhHhhhCCChhh--Hhhh-------hcCccChHH
Q 032384 71 SKTNEQTVQEML-NLAVKYNKAVQEEDELPPEK--LAIA-------NVGRQDAKK 115 (142)
Q Consensus 71 ~~~N~~~~~~m~-~La~~Y~k~i~eE~~~t~eq--l~i~-------~VGK~DpKk 115 (142)
...-+..|++|+ .|.+.|+-+|++=+.|||+- -++. .||=.||-+
T Consensus 350 pp~aKa~m~~lVa~l~~ayk~Ri~~ldWmtpeTrekAl~KL~~ft~kIGYP~~wr 404 (654)
T COG3590 350 PPEAKADMEELVANLIKAYKARISKLDWMTPETREKALEKLNKFTAKIGYPDPWR 404 (654)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhccccCHHHHHHHHHHHhccccccCCCchhh
Confidence 444567788887 89999999999999999953 3444 455555544
No 11
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.68 E-value=54 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.502 Sum_probs=24.0
Q ss_pred HHHHHHHhHhhhCCChhhHhhhhcCccC
Q 032384 85 AVKYNKAVQEEDELPPEKLAIANVGRQD 112 (142)
Q Consensus 85 a~~Y~k~i~eE~~~t~eql~i~~VGK~D 112 (142)
.+.-+.+|+|++...|.|-.+-+.||+-
T Consensus 23 verIKErvEEkeGIPp~qqrli~~gkqm 50 (70)
T KOG0005|consen 23 VERIKERVEEKEGIPPQQQRLIYAGKQM 50 (70)
T ss_pred HHHHHHHhhhhcCCCchhhhhhhccccc
Confidence 4556678999999999999999999984
No 12
>PF13210 DUF4018: Domain of unknown function (DUF4018)
Probab=30.45 E-value=18 Score=29.63 Aligned_cols=19 Identities=47% Similarity=0.725 Sum_probs=16.5
Q ss_pred CCCcccc---cccccccchhHH
Q 032384 5 QEPRQTT---SNLGHLNKPSIQ 23 (142)
Q Consensus 5 qEPRQTT---SNiGhL~KPsi~ 23 (142)
.||..|| ||.|||.||.+.
T Consensus 146 a~~kdt~d~w~nkG~l~~~~i~ 167 (192)
T PF13210_consen 146 AELKDTDDFWENKGHLKKPQIP 167 (192)
T ss_pred cCccchhHHHHhcCCCCCCcCc
Confidence 4788888 999999999874
No 13
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=28.86 E-value=63 Score=20.07 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhHh
Q 032384 73 TNEQTVQEMLNLAVKYNKAVQE 94 (142)
Q Consensus 73 ~N~~~~~~m~~La~~Y~k~i~e 94 (142)
+|..++++++++++....+|++
T Consensus 11 EnV~AvqeLck~t~~Le~rI~e 32 (36)
T PF13887_consen 11 ENVGAVQELCKLTDNLETRIDE 32 (36)
T ss_pred HHHHHHHHHHHHhccHHHHHHH
Confidence 4888999999999999999976
No 14
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=28.12 E-value=65 Score=23.45 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=13.0
Q ss_pred CCChhhHhhhhcCccChHHHHHH
Q 032384 97 ELPPEKLAIANVGRQDAKKHLEE 119 (142)
Q Consensus 97 ~~t~eql~i~~VGK~DpKkhL~e 119 (142)
++|.+|| +.=+|++||+.-++-
T Consensus 5 k~sn~EL-~kmaG~v~~k~~~dy 26 (93)
T PF06518_consen 5 KKSNEEL-IKMAGKVDPKDVPDY 26 (93)
T ss_dssp TS-HHHH-HHTTTTS-GGGHHHH
T ss_pred hcChHHH-HHHHCCCCHHHHHHH
Confidence 4556665 677788888765543
No 15
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=27.61 E-value=63 Score=27.62 Aligned_cols=42 Identities=26% Similarity=0.480 Sum_probs=30.4
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHhH--hhhCCChhhHhh
Q 032384 64 LHRFDCHSKTNEQTVQEMLNLAVKYNKAVQ--EEDELPPEKLAI 105 (142)
Q Consensus 64 l~~f~~~~~~N~~~~~~m~~La~~Y~k~i~--eE~~~t~eql~i 105 (142)
+.+|....-++.+.+++|++||+.-.+.-+ ++..||++|+++
T Consensus 207 I~~Y~~~~i~~~e~~~eLi~la~el~~~~~r~~~~gLseeE~AF 250 (335)
T PF11867_consen 207 IEKYNNRSISSEEVIEELIKLAKELREEEERAEELGLSEEELAF 250 (335)
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHH
Confidence 345555555678889999999988775532 356799999865
No 16
>PF07152 YaeQ: YaeQ protein; InterPro: IPR009822 This family consists of several hypothetical bacterial proteins of around 180 residues in length, which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function [].; PDB: 3C0U_B 2OT9_A 2G3W_B.
Probab=25.56 E-value=55 Score=26.40 Aligned_cols=25 Identities=36% Similarity=0.838 Sum_probs=19.5
Q ss_pred cCCccc---eeeeeeeCCHHHHHHHhhc
Q 032384 29 LNRHYY---SIAINYRKNELEEKMLLNL 53 (142)
Q Consensus 29 Lnr~YY---Si~I~yrkn~lEq~MLlnL 53 (142)
++|||| ++.|.-..+|-+++|+..|
T Consensus 17 ~DR~~Y~~~~lTiA~HPSEt~eRmm~Rl 44 (174)
T PF07152_consen 17 MDRHYYEDHNLTIARHPSETDERMMVRL 44 (174)
T ss_dssp TTTTEEEEEEEEEEE-TTS-HHHHHHHH
T ss_pred CCccccccccEEeeCCCCccHHHHHHHH
Confidence 689998 6888889999999998765
No 17
>PF04837 MbeB_N: MbeB-like, N-term conserved region; InterPro: IPR006922 This family consists of Mbe/Mob proteins defined by an N-terminal conserved region. These proteins are essential for specific plasmid transfer.
Probab=25.19 E-value=48 Score=21.92 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhHhhhCCChhhH
Q 032384 78 VQEMLNLAVKYNKAVQEEDELPPEKL 103 (142)
Q Consensus 78 ~~~m~~La~~Y~k~i~eE~~~t~eql 103 (142)
|.++++||+.+.+.-.++.+-|++.+
T Consensus 1 MS~il~LA~~feqkskeqa~ste~~v 26 (52)
T PF04837_consen 1 MSEILNLAKDFEQKSKEQAESTEQMV 26 (52)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888777777666566554
No 18
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=23.63 E-value=3.5e+02 Score=22.63 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhCCChhh----HhhhhcCccChHHH--HHHHHHHHHHHhHHHHHHH
Q 032384 73 TNEQTVQEMLNLAVKYNKAVQEEDELPPEK----LAIANVGRQDAKKH--LEEHVSNLMSSNIVQTLGT 135 (142)
Q Consensus 73 ~N~~~~~~m~~La~~Y~k~i~eE~~~t~eq----l~i~~VGK~DpKkh--L~e~v~~lm~~Nivq~l~~ 135 (142)
+...+-..++++++.|..++-.- +.+| ..++-.|+.||-++ .-..+..++.-|--|-|++
T Consensus 13 svq~t~~~Llk~i~~yq~~l~~l---sq~e~~LG~fl~e~~~~d~t~ag~~m~~t~KaL~~sg~qrl~~ 78 (204)
T cd07661 13 SVQDTCLELLKIIDNYQERLCIL---SQEENVLGKFLKEQGKIDKTTAGKMMAATGKALSFSSQQRLAL 78 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccChhhhccHHHHHHHHHHHhHHHHHHH
Confidence 34566678999999999988663 3444 24588899999988 3334455555555555544
No 19
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=23.11 E-value=37 Score=22.53 Aligned_cols=9 Identities=56% Similarity=0.748 Sum_probs=6.9
Q ss_pred CCCcccccc
Q 032384 5 QEPRQTTSN 13 (142)
Q Consensus 5 qEPRQTTSN 13 (142)
-.||||||-
T Consensus 24 ~sP~qTtt~ 32 (52)
T PF08629_consen 24 NSPRQTTTV 32 (52)
T ss_pred CCCCcceee
Confidence 469999863
No 20
>PHA02609 uvsW.1 hypothetical protein; Provisional
Probab=21.70 E-value=1.1e+02 Score=21.91 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhCCChhhHhhhh
Q 032384 76 QTVQEMLNLAVKYNKAVQEEDELPPEKLAIAN 107 (142)
Q Consensus 76 ~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~~ 107 (142)
.+++.+.+|-+-|+|++.|=+-...+++.||.
T Consensus 24 ~T~eGl~ELEkyY~kR~KE~elk~sdDIsvRD 55 (76)
T PHA02609 24 QTLEGLEELEKYYKKRVKEVELKDSDDISVRD 55 (76)
T ss_pred chhhhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 45677888999999999886544446666653
No 21
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=21.07 E-value=81 Score=26.85 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.2
Q ss_pred CccChHHHHHHHHHHHHHHhHHHH
Q 032384 109 GRQDAKKHLEEHVSNLMSSNIVQT 132 (142)
Q Consensus 109 GK~DpKkhL~e~v~~lm~~Nivq~ 132 (142)
-|+||.||+.|..+++=..-.||.
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTvqn 91 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTVQN 91 (251)
T ss_pred HhcChhHHHHHHHHHHhhchhHHH
Confidence 489999999998888766666654
No 22
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=20.72 E-value=63 Score=27.35 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHHHHHHHHHHHHhHHHHH
Q 032384 72 KTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 133 (142)
Q Consensus 72 ~~N~~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL~e~v~~lm~~Nivq~l 133 (142)
..|.+-+++....|+.-.++ ..=+|+.-+|||-+|+.+........-.++..+++
T Consensus 41 G~D~eWIq~Ft~~a~~va~~-------a~i~LEm~yvGKsn~~e~v~~~~~~i~~e~ls~~~ 95 (235)
T PF14577_consen 41 GEDMEWIQEFTKAARKVAKA-------ADIQLEMVYVGKSNPREQVRKIIATITSEKLSHSW 95 (235)
T ss_pred CCCHHHHHHHHHHHHHHHHh-------cCCceEEEEecCCChHHHHHHHhhhhhhccccccc
Confidence 44566666666555444321 23457788999999999998888887777776654
No 23
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=20.70 E-value=47 Score=25.48 Aligned_cols=22 Identities=23% Similarity=0.703 Sum_probs=18.6
Q ss_pred hhHHHHHHhcCCccceeeeeee
Q 032384 20 PSIQALIHGLNRHYYSIAINYR 41 (142)
Q Consensus 20 Psi~AliHGLnr~YYSi~I~yr 41 (142)
|-...+|+|+.++||.+.|...
T Consensus 143 ~~~~Gli~g~A~~f~~~~v~i~ 164 (171)
T PF07700_consen 143 PYVIGLIRGAAKHFFELDVEIE 164 (171)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCeEEE
Confidence 4578999999999999888753
No 24
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=20.58 E-value=53 Score=29.20 Aligned_cols=80 Identities=24% Similarity=0.278 Sum_probs=48.3
Q ss_pred ceeeeeeeCCHHHHHHHhhccccCccccCc--ccchhhh----------------hhhhHHHHHHHHHHHHHHHHHhHhh
Q 032384 34 YSIAINYRKNELEEKMLLNLHKKKWTDGLT--LHRFDCH----------------SKTNEQTVQEMLNLAVKYNKAVQEE 95 (142)
Q Consensus 34 YSi~I~yrkn~lEq~MLlnLhKk~W~~gL~--l~~f~~~----------------~~~N~~~~~~m~~La~~Y~k~i~eE 95 (142)
++|.++|++++.=-.-+-|-||+.-.+.|+ +..|+.- =-+....+-.|+.+.-.|....-..
T Consensus 49 ~~I~~~~~~~~~v~~~~~~~h~~~~~~~l~r~~l~~~g~~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~ 128 (333)
T COG2605 49 DEIRVRYDRTEFVKSYLENEHKPLVVESLKRDFLEFNGGTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGP 128 (333)
T ss_pred ceEEEecchHHhhhhhHhhcCchHHHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCH
Confidence 688999999988788888888877766665 2333322 0123455666776666666544333
Q ss_pred hCCChhhHhhh------hcCccCh
Q 032384 96 DELPPEKLAIA------NVGRQDA 113 (142)
Q Consensus 96 ~~~t~eql~i~------~VGK~Dp 113 (142)
.++-.+-..|. -.|+|||
T Consensus 129 ~~LA~eAy~IER~~l~~~gG~QDq 152 (333)
T COG2605 129 YELAREAYEIEREDLKIVGGKQDQ 152 (333)
T ss_pred HHHHHHHHHHHHHHhccccccccH
Confidence 33333222232 3688987
No 25
>PF11637 UvsW: ATP-dependant DNA helicase UvsW; InterPro: IPR020975 This entry represents the DNA helicase UvsW from Enterobacteria phage T4. The protein is a member of the monomeric SF2 helicase superfamily and shows structural homology to the eukaryotic SF2 helicase Rad54. UvsW is thought to have a role in recombination and the rescue of stalled replication forks []. ; PDB: 2JPN_A.
Probab=20.04 E-value=1.3e+02 Score=20.30 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhCCChhhHhhh
Q 032384 76 QTVQEMLNLAVKYNKAVQEEDELPPEKLAIA 106 (142)
Q Consensus 76 ~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~ 106 (142)
.+++.+.+|-+-|+|++.|=+-...+++.||
T Consensus 5 ~T~~Gl~ELEkyY~kR~KEv~l~~sdDIsiR 35 (54)
T PF11637_consen 5 QTLDGLEELEKYYKKRKKEVELKDSDDISIR 35 (54)
T ss_dssp -SHHHHHHHHHHHHHHTTTS--TTHHHHHHH
T ss_pred cccccHHHHHHHHHHhhhhcccCCcccccHH
Confidence 3466788899999999987643334666665
Done!