Query 032384
Match_columns 142
No_of_seqs 101 out of 133
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 21:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_V 26S proteasome regulato 100.0 6.3E-40 2.2E-44 274.6 1.2 140 3-142 166-305 (306)
2 3m48_A General control protein 43.1 15 0.00051 21.6 2.1 15 115-129 3-17 (33)
3 2hy6_A General control protein 41.8 17 0.00059 21.4 2.2 14 115-128 4-17 (34)
4 3c3g_A Alpha/beta peptide with 41.0 18 0.00062 21.2 2.2 14 115-128 3-16 (33)
5 1uo4_A General control protein 40.8 18 0.00063 21.3 2.2 15 115-129 4-18 (34)
6 2bni_A General control protein 36.0 24 0.00083 20.8 2.2 14 115-128 4-17 (34)
7 2oxj_A Hybrid alpha/beta pepti 35.7 23 0.00078 20.9 2.1 15 115-129 4-18 (34)
8 3c3f_A Alpha/beta peptide with 34.2 27 0.00093 20.6 2.2 14 115-128 4-17 (34)
9 2wq1_A General control protein 32.6 30 0.001 20.3 2.2 14 115-128 3-16 (33)
10 3v2l_A AGAP005208-PA; odorant 32.1 59 0.002 21.5 4.1 36 78-113 3-38 (120)
11 1kd8_B GABH BLL, GCN4 acid bas 30.6 33 0.0011 20.4 2.2 14 115-128 4-17 (36)
12 1kd8_A GABH AIV, GCN4 acid bas 29.3 36 0.0012 20.3 2.2 14 115-128 4-17 (36)
13 1bhd_A Utrophin; calponin homo 29.1 60 0.0021 22.8 3.8 59 52-117 31-101 (118)
14 2r2v_A GCN4 leucine zipper; co 27.2 42 0.0014 19.7 2.2 14 115-128 4-17 (34)
15 3mv2_A Coatomer subunit alpha; 26.1 1E+02 0.0035 26.0 5.3 44 71-121 151-194 (325)
16 2kso_A Ephrin type-A receptor 23.9 57 0.002 21.5 2.7 55 58-126 22-77 (82)
17 3s0a_A OBP14; all helical prot 23.2 97 0.0033 21.0 3.9 35 78-112 3-37 (119)
18 2k4p_A Phosphatidylinositol-3, 22.1 32 0.0011 23.2 1.2 53 58-124 32-85 (86)
19 1bkr_A Spectrin beta chain; fi 21.4 78 0.0027 21.8 3.2 59 52-117 26-96 (109)
20 3jrt_A Integron cassette prote 21.3 6 0.0002 31.0 -3.0 33 16-48 57-91 (192)
No 1
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-40 Score=274.62 Aligned_cols=140 Identities=47% Similarity=0.752 Sum_probs=106.1
Q ss_pred CCCCCcccccccccccchhHHHHHHhcCCccceeeeeeeCCHHHHHHHhhccccCccccCcccchhhhhhhhHHHHHHHH
Q 032384 3 LGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLHRFDCHSKTNEQTVQEML 82 (142)
Q Consensus 3 ~gqEPRQTTSNiGhL~KPsi~AliHGLnr~YYSi~I~yrkn~lEq~MLlnLhKk~W~~gL~l~~f~~~~~~N~~~~~~m~ 82 (142)
.+++|||+|||.|++.+|+++++.||++++|||++|+|+|+++|++||.+|+++.|..+|.+.+|.++.+.|.+.++.|+
T Consensus 166 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i~~m~ 245 (306)
T 4b4t_V 166 NNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMV 245 (306)
T ss_dssp CCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHHHHHS
T ss_pred cccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHHHHHHHHHHHHhHHHHHHHhhhhccC
Q 032384 83 NLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLDTVIF 142 (142)
Q Consensus 83 ~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL~e~v~~lm~~Nivq~l~~ml~~~~f 142 (142)
+++++|.|.|++|+.++++++++++|||+||||||++.++++|++||+|+||+|||+++|
T Consensus 246 ~~~~~y~k~v~~e~~~~~~~l~~~~vgk~dp~~~l~~~~~~l~~~ni~~~l~~~~~~~~~ 305 (306)
T 4b4t_V 246 KIAEQYSKRIEEEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVLTAGVNSVAI 305 (306)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCSCSSCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccCCHHHHHhhccCccChHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999998
No 2
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=43.11 E-value=15 Score=21.56 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhH
Q 032384 115 KHLEEHVSNLMSSNI 129 (142)
Q Consensus 115 khL~e~v~~lm~~Ni 129 (142)
..|+++|++|+..|.
T Consensus 3 ~QLE~kVEeLl~~n~ 17 (33)
T 3m48_A 3 AQLEAKVEELLSKNW 17 (33)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhH
Confidence 369999999999885
No 3
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=41.76 E-value=17 Score=21.41 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHh
Q 032384 115 KHLEEHVSNLMSSN 128 (142)
Q Consensus 115 khL~e~v~~lm~~N 128 (142)
+.|++.|++|+..|
T Consensus 4 nQLEdkVEeLl~~~ 17 (34)
T 2hy6_A 4 KQLADAVEELASAN 17 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 45778888887765
No 4
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=41.04 E-value=18 Score=21.19 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHh
Q 032384 115 KHLEEHVSNLMSSN 128 (142)
Q Consensus 115 khL~e~v~~lm~~N 128 (142)
..|+++|++|+..|
T Consensus 3 nQLEdKvEeLl~~~ 16 (33)
T 3c3g_A 3 KXIEXKLXEIXSKX 16 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 46888888888876
No 5
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.75 E-value=18 Score=21.31 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhH
Q 032384 115 KHLEEHVSNLMSSNI 129 (142)
Q Consensus 115 khL~e~v~~lm~~Ni 129 (142)
..|+++|++|+..|.
T Consensus 4 ~QLEdKVEeLl~~n~ 18 (34)
T 1uo4_A 4 KQIEDKGEEILSKLY 18 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhH
Confidence 468889999988774
No 6
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=35.98 E-value=24 Score=20.78 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHh
Q 032384 115 KHLEEHVSNLMSSN 128 (142)
Q Consensus 115 khL~e~v~~lm~~N 128 (142)
..|+++|++|+..|
T Consensus 4 nQLEdKvEeLl~~~ 17 (34)
T 2bni_A 4 KQIEDKLEEILSKG 17 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcc
Confidence 46888888888876
No 7
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.73 E-value=23 Score=20.89 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhH
Q 032384 115 KHLEEHVSNLMSSNI 129 (142)
Q Consensus 115 khL~e~v~~lm~~Ni 129 (142)
..|+++|++||..|-
T Consensus 4 nQLE~kVEeLl~~n~ 18 (34)
T 2oxj_A 4 XQLEXKVXELLXKNX 18 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 469999999999873
No 8
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=34.16 E-value=27 Score=20.56 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHh
Q 032384 115 KHLEEHVSNLMSSN 128 (142)
Q Consensus 115 khL~e~v~~lm~~N 128 (142)
..|+++|++|+..|
T Consensus 4 nQLEdKVEeLl~~~ 17 (34)
T 3c3f_A 4 XQIEXKLEXILSXL 17 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 46788888888766
No 9
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=32.63 E-value=30 Score=20.26 Aligned_cols=14 Identities=29% Similarity=0.368 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHh
Q 032384 115 KHLEEHVSNLMSSN 128 (142)
Q Consensus 115 khL~e~v~~lm~~N 128 (142)
+.|+++|++++..|
T Consensus 3 nQLEdKVEell~~~ 16 (33)
T 2wq1_A 3 KQLEDKIEENTSKI 16 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 46888888888765
No 10
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=32.15 E-value=59 Score=21.55 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccCh
Q 032384 78 VQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDA 113 (142)
Q Consensus 78 ~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~Dp 113 (142)
+++|.+.++.+.+.-.+|...|+++++--.-|...+
T Consensus 3 ~eq~~~~~~~~~~~C~~e~gv~~e~i~~~~~~~~p~ 38 (120)
T 3v2l_A 3 VEQMMKSGEMIRSVCLGKTKVAEELVNGLRESKFAD 38 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHTTTTCCCC
T ss_pred HHHHHHHHHHHHHHhhhhhCcCHHHHHHHHcCCCCC
Confidence 567888899999999999999999987666676644
No 11
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.59 E-value=33 Score=20.42 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHh
Q 032384 115 KHLEEHVSNLMSSN 128 (142)
Q Consensus 115 khL~e~v~~lm~~N 128 (142)
..|++.|++|+..|
T Consensus 4 nQLE~KVEeLl~~~ 17 (36)
T 1kd8_B 4 KQLKAKVEELKSKL 17 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 45777777777655
No 12
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=29.29 E-value=36 Score=20.26 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHh
Q 032384 115 KHLEEHVSNLMSSN 128 (142)
Q Consensus 115 khL~e~v~~lm~~N 128 (142)
+.|+++|++|+..|
T Consensus 4 nQLE~kVEeLl~~~ 17 (36)
T 1kd8_A 4 KQLEAEVEEIESEV 17 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 35777777777655
No 13
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=29.06 E-value=60 Score=22.80 Aligned_cols=59 Identities=31% Similarity=0.478 Sum_probs=34.6
Q ss_pred hccccCccccCcc-----------cchhhhhhhh-HHHHHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHH
Q 032384 52 NLHKKKWTDGLTL-----------HRFDCHSKTN-EQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHL 117 (142)
Q Consensus 52 nLhKk~W~~gL~l-----------~~f~~~~~~N-~~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL 117 (142)
|+. .+|.||+-+ -+|+.....+ .+..+...+.|+.. +-=..-+++|++. +|+.|+|-=+
T Consensus 31 nFs-~sw~DG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~---lgi~~ll~~eDv~---~~~pD~ksvm 101 (118)
T 1bhd_A 31 NFT-TSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTY---LGIEKLLDPEDVA---VRLPDKKSII 101 (118)
T ss_dssp SSS-GGGTTSHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHH---HCCCCCSCHHHHH---TSCCCHHHHH
T ss_pred CCc-ccccCcHHHHHHHHHHCcCcCCHHHhCcCCHHHHHHHHHHHHHHH---cCCCcccCHHHhh---cCCCcHHHHH
Confidence 444 678888753 3566655443 45666666666421 1112346788863 6888987544
No 14
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=27.18 E-value=42 Score=19.75 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHh
Q 032384 115 KHLEEHVSNLMSSN 128 (142)
Q Consensus 115 khL~e~v~~lm~~N 128 (142)
+.|+++|+++++.|
T Consensus 4 nQledKvEel~~~~ 17 (34)
T 2r2v_A 4 KQVADKLEEVASKL 17 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 45777777777654
No 15
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.06 E-value=1e+02 Score=25.95 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=32.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHHHHHH
Q 032384 71 SKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHV 121 (142)
Q Consensus 71 ~~~N~~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL~e~v 121 (142)
+++.++.+++++.++..|--.+.=|. +=+.+++-||||.||-.+
T Consensus 151 ~~~e~~e~~eli~icrEYilal~iEl-------~Rr~l~~~~~kR~lELAA 194 (325)
T 3mv2_A 151 DAEDEKLAHKILETAREYILGLSIEL-------ERRSLKEGNTVRMLELAA 194 (325)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcCcccHHHHHHHHH
Confidence 34556778999999999998776543 235667779999998644
No 16
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=23.87 E-value=57 Score=21.50 Aligned_cols=55 Identities=11% Similarity=0.289 Sum_probs=38.6
Q ss_pred ccccCcccchhhhhhhhHHH-HHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHHHHHHHHHHH
Q 032384 58 WTDGLTLHRFDCHSKTNEQT-VQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMS 126 (142)
Q Consensus 58 W~~gL~l~~f~~~~~~N~~~-~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL~e~v~~lm~ 126 (142)
|-+++.|..|...-..|.=. ++.+ ..||+++|+--+|-++.+.+.|-..+..+-.
T Consensus 22 WL~~lgL~qY~~~F~~~gid~~~~L--------------~~lt~~DL~~lGI~~~GhRkkIl~ai~~Lr~ 77 (82)
T 2kso_A 22 WLESIKMQQYTEHFMAAGYTAIEKV--------------VQMTNDDIKRIGVRLPGHQKRIAYSLLGLKD 77 (82)
T ss_dssp HHHHTTCTTHHHHHHHTTCCSHHHH--------------TTCCHHHHHHHHCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHcCCChHHHH--------------HhCCHHHHHHCCCCChhHHHHHHHHHHHHHH
Confidence 88888898887544444311 2222 2578888888889899999999887777543
No 17
>3s0a_A OBP14; all helical protein, unknown odorant molecules, antennae, TR protein; 1.15A {Apis mellifera} PDB: 3rzs_A 3s0b_A* 3s0d_A* 3s0e_A* 3s0f_A 3s0g_A
Probab=23.17 E-value=97 Score=20.98 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccC
Q 032384 78 VQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQD 112 (142)
Q Consensus 78 ~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~D 112 (142)
++++.+.++.|.+.-.+|...|++.++--.-|...
T Consensus 3 ~ee~~~~~~~~~~~C~~e~gvs~e~i~~~~~g~~~ 37 (119)
T 3s0a_A 3 IEELKTRLHTEQSVCKTETGIDQQKANDVIEGNID 37 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 46888889999999999999999988665667764
No 18
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=22.09 E-value=32 Score=23.24 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=37.0
Q ss_pred ccccCcccchhhhhhhhH-HHHHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHHHHHHHHH
Q 032384 58 WTDGLTLHRFDCHSKTNE-QTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNL 124 (142)
Q Consensus 58 W~~gL~l~~f~~~~~~N~-~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL~e~v~~l 124 (142)
|-+++.|..|...-..|. ..++.+. .+|.++|+--+|.++.+.+.|...++.|
T Consensus 32 WL~~lgL~qY~~~F~~~g~~~le~l~--------------~lt~~DL~~lGIt~~GHRkkIL~aI~~L 85 (86)
T 2k4p_A 32 WLRAIGLERYEEGLVHNGWDDLEFLS--------------DITEEDLEEAGVQDPAHKRLLLDTLQLS 85 (86)
T ss_dssp HHHTTTCGGGHHHHHTTTCCCHHHHT--------------TCCHHHHHHTTCCCHHHHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHHcCCChHHHHH--------------hCCHHHHHHCCCCCHHHHHHHHHHHHHc
Confidence 888999999877555554 2222222 4788888888888888888887766653
No 19
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=21.40 E-value=78 Score=21.83 Aligned_cols=59 Identities=31% Similarity=0.481 Sum_probs=35.1
Q ss_pred hccccCccccCcc-----------cchhhhhhhh-HHHHHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHHHH
Q 032384 52 NLHKKKWTDGLTL-----------HRFDCHSKTN-EQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHL 117 (142)
Q Consensus 52 nLhKk~W~~gL~l-----------~~f~~~~~~N-~~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKkhL 117 (142)
|+. .+|.||+-+ -+|+.....+ .+..+...+.|+..- -=..-++||++ -+|++|+|-=+
T Consensus 26 nFs-~sw~dG~af~aLih~~~P~lid~~~l~~~~~~~n~~~af~~Ae~~l---gi~~ll~~eDv---~~~~pD~ksi~ 96 (109)
T 1bkr_A 26 NFT-TSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHL---GLTKLLDPEDI---SVDHPDEKSII 96 (109)
T ss_dssp SSS-GGGTTSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHHH---CCCCCCCHHHH---SSSSCCHHHHH
T ss_pred CCc-ccccccHHHHHHHHHHCcCCCCHHHcCcCCHHHHHHHHHHHHHHHc---CCCccCCHHHc---cCCCCcHHHHH
Confidence 444 678888753 3566654444 566777777774211 11234678885 36888987543
No 20
>3jrt_A Integron cassette protein VPC_CASS2; mobIle metagenome, structural genomics, PSI-2 protein structure initiative; 2.30A {Vibrio paracholerae}
Probab=21.28 E-value=6 Score=31.03 Aligned_cols=33 Identities=42% Similarity=0.524 Sum_probs=22.7
Q ss_pred cccchhHHHHHHhcCC-ccceeeeeeeCC-HHHHH
Q 032384 16 HLNKPSIQALIHGLNR-HYYSIAINYRKN-ELEEK 48 (142)
Q Consensus 16 hL~KPsi~AliHGLnr-~YYSi~I~yrkn-~lEq~ 48 (142)
.+.+|+.++.-...=| -||||+|++||- |+-++
T Consensus 57 ~~h~p~~kt~RQciwRLCf~SIViNCrKYVEln~K 91 (192)
T 3jrt_A 57 FLREPQHQTKRQCIWRLCVYSIVINCRKYVELNQK 91 (192)
T ss_dssp GGGSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3556776666555544 489999999996 55444
Done!