Query 032384
Match_columns 142
No_of_seqs 101 out of 133
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 21:56:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032384.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032384hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ot9a1 c.52.1.33 (A:2-180) Hy 27.8 11 0.00081 27.6 1.6 25 29-53 16-43 (179)
2 d2g3wa1 c.52.1.33 (A:4-182) Hy 23.7 14 0.001 26.9 1.5 25 29-53 14-41 (179)
3 d1bkra_ a.40.1.1 (A:) beta-spe 19.6 59 0.0043 20.6 3.9 54 56-115 28-93 (108)
4 d1bhda_ a.40.1.1 (A:) Utrophin 15.3 60 0.0044 20.6 3.1 54 56-115 31-96 (108)
5 d1sh5a2 a.40.1.1 (A:128-237) A 14.2 1.1E+02 0.0077 19.5 4.2 54 56-115 32-97 (110)
6 d1lxna_ d.58.48.1 (A:) Hypothe 13.9 31 0.0022 22.5 1.2 17 27-43 67-83 (99)
7 d3buxb3 d.93.1.1 (B:264-351) C 13.9 23 0.0017 23.1 0.6 21 17-37 57-77 (88)
8 d1rz4a2 a.118.1.18 (A:2-131) E 13.2 27 0.0019 24.2 0.7 14 19-32 7-20 (130)
9 d1gy6a_ d.17.4.2 (A:) Nuclear 11.8 15 0.0011 24.3 -1.0 22 18-39 1-22 (125)
10 d2iboa1 d.58.48.1 (A:1-90) Hyp 10.6 64 0.0047 20.2 2.0 23 21-43 59-81 (90)
No 1
>d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=27.81 E-value=11 Score=27.57 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred cCCccc---eeeeeeeCCHHHHHHHhhc
Q 032384 29 LNRHYY---SIAINYRKNELEEKMLLNL 53 (142)
Q Consensus 29 Lnr~YY---Si~I~yrkn~lEq~MLlnL 53 (142)
++|||| ++.|.-..+|-+++|+..|
T Consensus 16 mDR~~Y~~~~LTlArHPSEt~eRmm~Rl 43 (179)
T d2ot9a1 16 LDRGVYESVKQTIARHPSETEERMTVRL 43 (179)
T ss_dssp TTTTEEEEEEEEEEECTTSCHHHHHHHH
T ss_pred ccccccccceEEEecCCCccHHHHHHHH
Confidence 689998 6889999999999998865
No 2
>d2g3wa1 c.52.1.33 (A:4-182) Hypothetical protein XAC2396 {Xanthomonas axonopodis pv. citri [TaxId: 92829]}
Probab=23.70 E-value=14 Score=26.88 Aligned_cols=25 Identities=28% Similarity=0.723 Sum_probs=21.8
Q ss_pred cCCccc---eeeeeeeCCHHHHHHHhhc
Q 032384 29 LNRHYY---SIAINYRKNELEEKMLLNL 53 (142)
Q Consensus 29 Lnr~YY---Si~I~yrkn~lEq~MLlnL 53 (142)
++|||| ++.|.-..+|-+++|+..|
T Consensus 14 mDR~~Y~~~~lTlArHPSEt~eRmm~Rl 41 (179)
T d2g3wa1 14 MDRGYYANHSLTLAQHPSETDERLMVRL 41 (179)
T ss_dssp TTTTEEEEEEEEEEECTTCCHHHHHHHH
T ss_pred ccccccccceEEEecCCCccHHHHHHHH
Confidence 689998 6889999999999999876
No 3
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.57 E-value=59 Score=20.57 Aligned_cols=54 Identities=33% Similarity=0.526 Sum_probs=30.4
Q ss_pred cCccccC-----------cccchhhhhhhh-HHHHHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHH
Q 032384 56 KKWTDGL-----------TLHRFDCHSKTN-EQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKK 115 (142)
Q Consensus 56 k~W~~gL-----------~l~~f~~~~~~N-~~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKk 115 (142)
.+|.||+ .+-+|+.....+ .+..+...++|+.- +-=..-++++++ ..|..|+|-
T Consensus 28 ~sw~DG~af~aLi~~~~P~~~~~~~l~~~~~~~~~~~a~~~ae~~---lgip~ll~~ed~---~~~~pD~~s 93 (108)
T d1bkra_ 28 TSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQH---LGLTKLLDPEDI---SVDHPDEKS 93 (108)
T ss_dssp GGGTTSHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHH---HCCCCCCCHHHH---SSSSCCHHH
T ss_pred CcccCcHHHHHHHHHHCcCcccHHhcccCCHHHHHHHHHHHHHHh---cCCCCcCCHHhc---cCCCCcHHH
Confidence 4688886 234455554443 45555556665321 111345677876 468888874
No 4
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.30 E-value=60 Score=20.57 Aligned_cols=54 Identities=31% Similarity=0.473 Sum_probs=29.1
Q ss_pred cCccccCcc-----------cchhhhhhh-hHHHHHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHH
Q 032384 56 KKWTDGLTL-----------HRFDCHSKT-NEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKK 115 (142)
Q Consensus 56 k~W~~gL~l-----------~~f~~~~~~-N~~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKk 115 (142)
++|.||+-+ -+|+..... +.+.++...+.|+.- +-=..-++++++. .|++|+|.
T Consensus 31 ~sw~DG~a~caLih~~~P~~i~~~~l~~~~~~~~~~~af~~a~~~---lgip~ll~~~D~~---~~~pD~~s 96 (108)
T d1bhda_ 31 TSWTDGLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTY---LGIEKLLDPEDVA---VRLPDKKS 96 (108)
T ss_dssp GGGTTSHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHH---HCCCCCSCHHHHH---TSCCCHHH
T ss_pred cccccchHHHHHHHHHCccccChhhcCcCCHHHHHHHHHHHHHHh---CCCCCCCCHHHhc---cCCCcHHH
Confidence 468888743 244444433 345555666665331 1113345677753 47888875
No 5
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.23 E-value=1.1e+02 Score=19.48 Aligned_cols=54 Identities=19% Similarity=0.346 Sum_probs=30.1
Q ss_pred cCccccCcc-----------cchhhhhhhh-HHHHHHHHHHHHHHHHHhHhhhCCChhhHhhhhcCccChHH
Q 032384 56 KKWTDGLTL-----------HRFDCHSKTN-EQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKK 115 (142)
Q Consensus 56 k~W~~gL~l-----------~~f~~~~~~N-~~~~~~m~~La~~Y~k~i~eE~~~t~eql~i~~VGK~DpKk 115 (142)
++|.||+-+ -+|+.....+ .+.++...++|+.. +-=..-++++++ ..|+.|.|.
T Consensus 32 ~sw~DG~afcaLih~~~P~~id~~~l~~~~~~~~~~~a~~~Ae~~---lgip~ll~~eD~---~~~~pD~~s 97 (110)
T d1sh5a2 32 TSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERD---LGVTRLLDPEDV---DVPQPDEKS 97 (110)
T ss_dssp GGGTTSHHHHHHHHTTCTTTCCHHHHHHSCHHHHHHHHHHHHHHH---HCCCCCCCHHHH---SSSSCCHHH
T ss_pred ccccCcHHHHHHHHHHCcccCChhhcCccCHHHHHHHHHHHHHHc---CCCCCCCCHHHH---ccCCCcHHH
Confidence 568888744 3555554433 45555555655221 111235677885 468888765
No 6
>d1lxna_ d.58.48.1 (A:) Hypothetical protein MTH1187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=13.92 E-value=31 Score=22.48 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=15.4
Q ss_pred HhcCCccceeeeeeeCC
Q 032384 27 HGLNRHYYSIAINYRKN 43 (142)
Q Consensus 27 HGLnr~YYSi~I~yrkn 43 (142)
-|..|.|.+|-|+||..
T Consensus 67 ~G~~RV~t~iKId~R~d 83 (99)
T d1lxna_ 67 AGSDRVYTTLKIDDRRD 83 (99)
T ss_dssp TTCSEEEEEEEEEEESS
T ss_pred CCCCeEEEEEEEeccCC
Confidence 38899999999999985
No 7
>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.90 E-value=23 Score=23.06 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=17.4
Q ss_pred ccchhHHHHHHhcCCccceee
Q 032384 17 LNKPSIQALIHGLNRHYYSIA 37 (142)
Q Consensus 17 L~KPsi~AliHGLnr~YYSi~ 37 (142)
.+||-.||||.|-..-||-.+
T Consensus 57 ~nk~L~qaLidG~reGfylyP 77 (88)
T d3buxb3 57 HNKPLFQALIDGFREGFYLFP 77 (88)
T ss_dssp SSCCHHHHHHHHHHHTSSCEE
T ss_pred CccHHHHHHHhcccceeEECC
Confidence 489999999999888777544
No 8
>d1rz4a2 a.118.1.18 (A:2-131) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.16 E-value=27 Score=24.17 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=11.3
Q ss_pred chhHHHHHHhcCCc
Q 032384 19 KPSIQALIHGLNRH 32 (142)
Q Consensus 19 KPsi~AliHGLnr~ 32 (142)
|.+|.++++|++|.
T Consensus 7 ~~~i~~lL~gidRY 20 (130)
T d1rz4a2 7 RANVGKLLKGIDRY 20 (130)
T ss_dssp HHHHHHHHHSGGGG
T ss_pred HHHHHHHHhCcccC
Confidence 56788999999974
No 9
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.81 E-value=15 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.4
Q ss_pred cchhHHHHHHhcCCccceeeee
Q 032384 18 NKPSIQALIHGLNRHYYSIAIN 39 (142)
Q Consensus 18 ~KPsi~AliHGLnr~YYSi~I~ 39 (142)
.||+.+.+-...=++||++--+
T Consensus 1 ~~p~~e~ig~~Fv~~YY~~l~~ 22 (125)
T d1gy6a_ 1 DKPIWEQIGSSFIQHYYQLFDN 22 (125)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhC
Confidence 3899999999999999998664
No 10
>d2iboa1 d.58.48.1 (A:1-90) Hypothetical protein SP2199 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=10.62 E-value=64 Score=20.23 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=19.1
Q ss_pred hHHHHHHhcCCccceeeeeeeCC
Q 032384 21 SIQALIHGLNRHYYSIAINYRKN 43 (142)
Q Consensus 21 si~AliHGLnr~YYSi~I~yrkn 43 (142)
..+++-.|.+|-++++-|.||..
T Consensus 59 ~~e~~~~g~~rv~~~iKId~r~~ 81 (90)
T d2iboa1 59 ALEVAGQEADNVFANVKINVGEI 81 (90)
T ss_dssp HHHHHHTSCSCEEEEEEEEEESC
T ss_pred HHHHHHcCCCeEEEEEEEEcCCC
Confidence 34566779999999999999964
Done!