Query 032385
Match_columns 142
No_of_seqs 105 out of 137
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 13:24:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4744 Uncharacterized conser 98.3 2E-06 4.4E-11 74.6 6.7 55 52-106 225-279 (308)
2 KOG4744 Uncharacterized conser 97.4 0.00056 1.2E-08 59.6 6.7 82 18-99 150-250 (308)
3 PF02987 LEA_4: Late embryogen 94.7 0.043 9.3E-07 34.6 3.2 25 21-45 4-28 (44)
4 PF02987 LEA_4: Late embryogen 94.5 0.14 3.1E-06 32.2 5.3 41 30-80 2-42 (44)
5 PF05957 DUF883: Bacterial pro 63.0 48 0.001 23.2 6.6 9 78-86 61-69 (94)
6 PF03760 LEA_1: Late embryogen 21.5 1.5E+02 0.0033 21.1 3.5 33 29-64 1-33 (73)
7 PF05532 CsbD: CsbD-like; Int 13.8 2.3E+02 0.0049 18.5 2.7 12 24-35 6-17 (53)
8 PF12732 YtxH: YtxH-like prote 11.7 5E+02 0.011 17.3 6.1 52 23-74 22-74 (74)
9 COG0436 Aspartate/tyrosine/aro 8.9 1.5E+02 0.0033 25.9 0.8 10 124-133 170-179 (393)
10 PF11839 DUF3359: Protein of u 8.2 9.1E+02 0.02 18.0 7.0 54 25-82 40-93 (96)
No 1
>KOG4744 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=2e-06 Score=74.57 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHhhhhhhhHHHHHHHHhHHHHHHHhccCcCCCCCCCCCCCC
Q 032385 52 QATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTDTTLPIDHS 106 (142)
Q Consensus 52 ktg~~lqQtgEqVK~~A~~gKDkt~~~aQqAgEaVKntaggA~davk~TlGm~~d 106 (142)
.+....+-.-+.+.+.+..++|++..+...+++.+..++.++.+.+.+++|+..+
T Consensus 225 ~A~d~a~~~k~~a~~~~~~~~dk~~d~~esak~~a~~~~~~A~~~~~~s~~~a~s 279 (308)
T KOG4744|consen 225 KAKDKAQTVKEKAGEAAEKTKEKAKDAWESAKEGADQMAEGASDAVKESYGSATS 279 (308)
T ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 3333333333333446667889999999999999999999999999999999886
No 2
>KOG4744 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00056 Score=59.62 Aligned_cols=82 Identities=20% Similarity=0.203 Sum_probs=47.5
Q ss_pred hcCCCCchHHHHHHHHHhhHHHHHHHhh-hhhhhhh------------------hhhHHHHHHHHHHHhhhhhhhHHHHH
Q 032385 18 ACQPQPVPDAVIQEALDNLASISQSAQN-DNTYKTQ------------------ATNLLQQTGEQVKNMAQGAGEQVKNM 78 (142)
Q Consensus 18 agqAqeKa~etaqsAkdkas~aAQsAke-a~~~kdk------------------tg~~lqQtgEqVK~~A~~gKDkt~~~ 78 (142)
++.+++|+.+.++++++++.++++++++ +.+.++. +..++.++.|.+|+.++..+|+...+
T Consensus 150 A~~AkdktkdkA~sakeka~e~a~sA~dkA~dake~Ak~~A~d~~d~a~e~~~~A~dk~~et~e~~Kdka~d~~e~A~d~ 229 (308)
T KOG4744|consen 150 AGSAKDKAKDKAESAKEKAGEAADSARDKAADAKESAKNKAEDTKDSAPEAAGSAKDKAAETAEKAKDKAQDAKEKAKDK 229 (308)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455555555555555555555555555 2333333 66677777777777777777776666
Q ss_pred HHHhHHHHHHHhccCcCCCCC
Q 032385 79 AQGAAHAVKNTLGMNADNTDT 99 (142)
Q Consensus 79 aQqAgEaVKntaggA~davk~ 99 (142)
++...|.+.....-..|.++.
T Consensus 230 a~~~k~~a~~~~~~~~dk~~d 250 (308)
T KOG4744|consen 230 AQTVKEKAGEAAEKTKEKAKD 250 (308)
T ss_pred hhhHHHHHHHHHHhhhhhhhh
Confidence 666666555555555554443
No 3
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=94.72 E-value=0.043 Score=34.59 Aligned_cols=25 Identities=8% Similarity=0.096 Sum_probs=13.1
Q ss_pred CCCchHHHHHHHHHhhHHHHHHHhh
Q 032385 21 PQPVPDAVIQEALDNLASISQSAQN 45 (142)
Q Consensus 21 AqeKa~etaqsAkdkas~aAQsAke 45 (142)
+.+|+.++.+.+++++.++.+++.+
T Consensus 4 a~~Ka~e~~d~a~~ka~e~kd~a~e 28 (44)
T PF02987_consen 4 AKEKASEAKDAAKEKAGEAKDAAAE 28 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544444444
No 4
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].
Probab=94.51 E-value=0.14 Score=32.16 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=21.2
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHH
Q 032385 30 QEALDNLASISQSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQ 80 (142)
Q Consensus 30 qsAkdkas~aAQsAkea~~~kdktg~~lqQtgEqVK~~A~~gKDkt~~~aQ 80 (142)
+.+++|+.++...++++ ++++.+.+.+.+...||.++..+.
T Consensus 2 e~a~~Ka~e~~d~a~~k----------a~e~kd~a~eKa~eaKd~a~eka~ 42 (44)
T PF02987_consen 2 EAAKEKASEAKDAAKEK----------AGEAKDAAAEKAEEAKDSAKEKAG 42 (44)
T ss_pred hHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555655555555552 555555555555555555544443
No 5
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=63.04 E-value=48 Score=23.17 Aligned_cols=9 Identities=22% Similarity=0.172 Sum_probs=3.4
Q ss_pred HHHHhHHHH
Q 032385 78 MAQGAAHAV 86 (142)
Q Consensus 78 ~aQqAgEaV 86 (142)
.+-.+.+.|
T Consensus 61 ~~~~~~~~V 69 (94)
T PF05957_consen 61 AAEQTEDYV 69 (94)
T ss_pred HHHHHHHHH
Confidence 333333333
No 6
>PF03760 LEA_1: Late embryogenesis abundant (LEA) group 1 ; InterPro: IPR005513 LEA proteins are late embryonic proteins abundant in higher plant seed embryos. They may play an essential role in seed survival and control of water exchanges during seed desiccation and imbibition. Family members are conserved along the entire coding region, especially within the hydrophobic internal 20 amino acid motif. This motif may be repeated.; GO: 0009790 embryo development
Probab=21.45 E-value=1.5e+02 Score=21.15 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHhhHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q 032385 29 IQEALDNLASISQSAQNDNTYKTQATNLLQQTGEQV 64 (142)
Q Consensus 29 aqsAkdkas~aAQsAkea~~~kdktg~~lqQtgEqV 64 (142)
|+++|+++++++-++++ +.+++.-.+++-.|.+
T Consensus 1 Mqa~Kek~~n~~asAka---~~~k~kA~aqEKaeK~ 33 (73)
T PF03760_consen 1 MQAAKEKAANAAASAKA---KMEKTKAKAQEKAEKA 33 (73)
T ss_pred ChhHHHHHHHHHHHHHh---hhHHHHHhHHHHHHHH
Confidence 46777887777777775 3455555566655544
No 7
>PF05532 CsbD: CsbD-like; InterPro: IPR008462 CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor []. The role of CsbD in stress response is unclear.; PDB: 1YWW_A 1RYK_A.
Probab=13.79 E-value=2.3e+02 Score=18.50 Aligned_cols=12 Identities=8% Similarity=0.050 Sum_probs=5.4
Q ss_pred chHHHHHHHHHh
Q 032385 24 VPDAVIQEALDN 35 (142)
Q Consensus 24 Ka~etaqsAkdk 35 (142)
+..++..++++.
T Consensus 6 ~~~~~kGk~Ke~ 17 (53)
T PF05532_consen 6 KADQAKGKVKEA 17 (53)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHhhHHHHH
Confidence 344444444444
No 8
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=11.70 E-value=5e+02 Score=17.31 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHhhHHHHHHHhh-hhhhhhhhhhHHHHHHHHHHHhhhhhhhH
Q 032385 23 PVPDAVIQEALDNLASISQSAQN-DNTYKTQATNLLQQTGEQVKNMAQGAGEQ 74 (142)
Q Consensus 23 eKa~etaqsAkdkas~aAQsAke-a~~~kdktg~~lqQtgEqVK~~A~~gKDk 74 (142)
++-.++-+..++.+.++...+++ ....++.....++++.+.+++.+..-+|+
T Consensus 22 ~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~e~~d~ 74 (74)
T PF12732_consen 22 KSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAEETADEAKEKAKELKDK 74 (74)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
No 9
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=8.89 E-value=1.5e+02 Score=25.85 Aligned_cols=10 Identities=40% Similarity=0.876 Sum_probs=0.0
Q ss_pred CCCCCCCCCc
Q 032385 124 EHPSNPTNNI 133 (142)
Q Consensus 124 ~~~~~~~~~~ 133 (142)
++|+|||+.+
T Consensus 170 n~P~NPTGav 179 (393)
T COG0436 170 NSPNNPTGAV 179 (393)
T ss_pred eCCCCCcCcC
No 10
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=8.24 E-value=9.1e+02 Score=18.01 Aligned_cols=54 Identities=22% Similarity=0.193 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 032385 25 PDAVIQEALDNLASISQSAQNDNTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGA 82 (142)
Q Consensus 25 a~etaqsAkdkas~aAQsAkea~~~kdktg~~lqQtgEqVK~~A~~gKDkt~~~aQqA 82 (142)
+.....++++.+..+.+.+.++....+. ..++.+.....|...-+|+.-|+.-+
T Consensus 40 a~~~a~~a~~~A~~A~~~AdeA~~kA~~----A~aaA~~Aqq~A~eAnek~~RMfeka 93 (96)
T PF11839_consen 40 AQATAASAQSAAASAQQRADEAASKADA----ALAAAEAAQQTADEANEKADRMFEKA 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Done!