Query 032385
Match_columns 142
No_of_seqs 105 out of 137
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 21:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x43_S Sherp; membrane protein 88.3 0.079 2.7E-06 36.4 -0.3 20 26-45 10-29 (67)
2 2x43_S Sherp; membrane protein 62.1 12 0.0004 25.6 4.3 10 86-95 49-58 (67)
3 2l9q_A 12 kDa heat shock prote 51.5 14 0.00046 27.4 3.4 34 61-98 75-108 (109)
4 2l9q_A 12 kDa heat shock prote 21.8 88 0.003 23.0 3.6 22 24-45 77-98 (109)
5 2o8l_A V8 protease, taphylococ 11.2 52 0.0018 25.5 0.0 14 123-136 251-264 (274)
6 2l7b_A Apolipoprotein E, APO-E 10.7 5.8E+02 0.02 20.9 6.2 84 19-102 209-296 (307)
7 2kfe_A Meucin-24; alpha-helix, 7.5 2.3E+02 0.0078 16.0 1.7 11 78-88 13-23 (26)
8 1yww_A Hypothetical protein PA 7.3 3E+02 0.01 18.8 2.6 21 21-41 26-46 (85)
9 1ryk_A Protein YJBJ; alpha pro 5.8 5E+02 0.017 16.5 3.0 17 23-39 8-24 (69)
10 3bwn_A AT1G70560, L-tryptophan 5.5 2E+02 0.0069 22.6 1.0 12 123-134 163-174 (391)
No 1
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=88.33 E-value=0.079 Score=36.43 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhHHHHHHHhh
Q 032385 26 DAVIQEALDNLASISQSAQN 45 (142)
Q Consensus 26 ~etaqsAkdkas~aAQsAke 45 (142)
.+.+...+|++.+-+|--||
T Consensus 10 ~~~A~E~kd~~~dK~qElKd 29 (67)
T 2x43_S 10 KNAAAEAKDNVHDKIQELKD 29 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444433444444
No 2
>2x43_S Sherp; membrane protein; NMR {Leishmania major}
Probab=62.07 E-value=12 Score=25.58 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=4.0
Q ss_pred HHHHhccCcC
Q 032385 86 VKNTLGMNAD 95 (142)
Q Consensus 86 VKntaggA~d 95 (142)
+|..+-++.|
T Consensus 49 iKDKisgGsd 58 (67)
T 2x43_S 49 IKDKLSGGSS 58 (67)
T ss_dssp HHHTTTSCCC
T ss_pred HHHHhccCcc
Confidence 3444444333
No 3
>2l9q_A 12 kDa heat shock protein; structural genomics, PSI-2, protein structure initiative, CE eukaryotic structural genomics, CESG; NMR {Saccharomyces cerevisiae} PDB: 2ljl_A
Probab=51.46 E-value=14 Score=27.36 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhHHHHHHHhccCcCCCC
Q 032385 61 GEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNADNTD 98 (142)
Q Consensus 61 gEqVK~~A~~gKDkt~~~aQqAgEaVKntaggA~davk 98 (142)
++.+|+....++| .|..|+|.|...++|+.+..+
T Consensus 75 ~dkak~a~g~~ke----~l~~AaeyVS~~~~G~~~g~k 108 (109)
T 2l9q_A 75 ADQARDYMGAAKS----KLNDAVEYVSGRVHGEEDPTK 108 (109)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHhhHH----HHHHHHHHHHhhccCCCCCCC
Confidence 4445554444555 455677888888898887654
No 4
>2l9q_A 12 kDa heat shock protein; structural genomics, PSI-2, protein structure initiative, CE eukaryotic structural genomics, CESG; NMR {Saccharomyces cerevisiae} PDB: 2ljl_A
Probab=21.83 E-value=88 Score=22.98 Aligned_cols=22 Identities=9% Similarity=0.049 Sum_probs=11.7
Q ss_pred chHHHHHHHHHhhHHHHHHHhh
Q 032385 24 VPDAVIQEALDNLASISQSAQN 45 (142)
Q Consensus 24 Ka~etaqsAkdkas~aAQsAke 45 (142)
|+.+.++.++++.+.+++|...
T Consensus 77 kak~a~g~~ke~l~~AaeyVS~ 98 (109)
T 2l9q_A 77 QARDYMGAAKSKLNDAVEYVSG 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHh
Confidence 5555555555555555555443
No 5
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A
Probab=11.23 E-value=52 Score=25.50 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcccc
Q 032385 123 AEHPSNPTNNINIT 136 (142)
Q Consensus 123 ~~~~~~~~~~~~~~ 136 (142)
.++|.||.|.-|-.
T Consensus 251 ~~~~~~~~~~~~~~ 264 (274)
T 2o8l_A 251 PDNPNNPDNPDNGD 264 (274)
T ss_dssp --------------
T ss_pred CCCCCCCCCCCCCC
Confidence 34444444444333
No 6
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=10.74 E-value=5.8e+02 Score=20.86 Aligned_cols=84 Identities=10% Similarity=0.098 Sum_probs=47.3
Q ss_pred cCCCCchHHHHHHHHHhhHHHHHHHhhh----hhhhhhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHhHHHHHHHhccCc
Q 032385 19 CQPQPVPDAVIQEALDNLASISQSAQND----NTYKTQATNLLQQTGEQVKNMAQGAGEQVKNMAQGAAHAVKNTLGMNA 94 (142)
Q Consensus 19 gqAqeKa~etaqsAkdkas~aAQsAkea----~~~kdktg~~lqQtgEqVK~~A~~gKDkt~~~aQqAgEaVKntaggA~ 94 (142)
..-++|+....+.-+.+..-.++.+++. ......-...+.+..+.++......-|....-+.-.+|.+|..+...-
T Consensus 209 ~~L~~ki~~~~e~Lr~~L~p~~~~~~~~l~~l~~q~ee~~~ql~~~aeel~~kl~~~~eeLr~~l~P~~e~lk~~l~~l~ 288 (307)
T 2l7b_A 209 QPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAAQARLKSRFEPLAEDMQRQWAGQV 288 (307)
T ss_dssp CCCSSCSCCHHHHHHHHHHHHHHTCSCSSCCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHTTSS
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345555566666666666666655541 011111112233444444554444444444466677778888888888
Q ss_pred CCCCCCCC
Q 032385 95 DNTDTTLP 102 (142)
Q Consensus 95 davk~TlG 102 (142)
+.+..+|+
T Consensus 289 E~l~~sl~ 296 (307)
T 2l7b_A 289 EKVQAAEG 296 (307)
T ss_dssp CCCSSSSC
T ss_pred HHHHHHhc
Confidence 88888886
No 7
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=7.53 E-value=2.3e+02 Score=16.02 Aligned_cols=11 Identities=27% Similarity=0.380 Sum_probs=7.5
Q ss_pred HHHHhHHHHHH
Q 032385 78 MAQGAAHAVKN 88 (142)
Q Consensus 78 ~aQqAgEaVKn 88 (142)
.|.++.|.+|+
T Consensus 13 kl~~akdK~k~ 23 (26)
T 2kfe_A 13 KLSGVKEKMKN 23 (26)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHc
Confidence 77777776664
No 8
>1yww_A Hypothetical protein PA4738; structural genomics, YJBJ, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa}
Probab=7.32 E-value=3e+02 Score=18.80 Aligned_cols=21 Identities=0% Similarity=-0.031 Sum_probs=11.9
Q ss_pred CCCchHHHHHHHHHhhHHHHH
Q 032385 21 PQPVPDAVIQEALDNLASISQ 41 (142)
Q Consensus 21 AqeKa~etaqsAkdkas~aAQ 41 (142)
.+-+..++...+|+..-.+..
T Consensus 26 ieG~~~q~kGk~KE~~GklTg 46 (85)
T 1yww_A 26 IKGKWKQLTGKIKERWGDLTD 46 (85)
T ss_dssp TTTSHHHHHHHHHHHCTTSCH
T ss_pred HHhHHHHHHHHHHHHHHHhcC
Confidence 445566666666666444433
No 9
>1ryk_A Protein YJBJ; alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.60.11.1
Probab=5.80 E-value=5e+02 Score=16.49 Aligned_cols=17 Identities=0% Similarity=-0.119 Sum_probs=8.6
Q ss_pred CchHHHHHHHHHhhHHH
Q 032385 23 PVPDAVIQEALDNLASI 39 (142)
Q Consensus 23 eKa~etaqsAkdkas~a 39 (142)
-+..++...+++..-.+
T Consensus 8 G~~~q~kGk~Ke~~G~l 24 (69)
T 1ryk_A 8 GNWKQFKGKVKEQWGKL 24 (69)
T ss_dssp SHHHHHHHHHHHHTCSS
T ss_pred hhHHHHHhHHHHHHHHh
Confidence 34455555555554433
No 10
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=5.45 E-value=2e+02 Score=22.56 Aligned_cols=12 Identities=33% Similarity=0.692 Sum_probs=9.3
Q ss_pred CCCCCCCCCCcc
Q 032385 123 AEHPSNPTNNIN 134 (142)
Q Consensus 123 ~~~~~~~~~~~~ 134 (142)
-.+|+|||+.+-
T Consensus 163 l~~p~NPtG~~~ 174 (391)
T 3bwn_A 163 VTSPNNPDGTIR 174 (391)
T ss_dssp EESSCTTTCCCC
T ss_pred ECCCCCCCchhH
Confidence 368999998763
Done!