Query 032386
Match_columns 142
No_of_seqs 141 out of 1866
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 13:25:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2164 Predicted E3 ubiquitin 99.8 1.3E-19 2.7E-24 145.0 6.6 132 7-141 186-321 (513)
2 PF15227 zf-C3HC4_4: zinc fing 99.6 1.8E-16 3.9E-21 88.3 3.1 42 10-52 1-42 (42)
3 PLN03208 E3 ubiquitin-protein 99.5 4.1E-14 8.8E-19 102.0 4.6 53 5-57 16-79 (193)
4 PF13923 zf-C3HC4_2: Zinc fing 99.4 1.8E-13 3.9E-18 75.0 2.9 38 10-52 1-39 (39)
5 KOG0823 Predicted E3 ubiquitin 99.4 2E-13 4.2E-18 100.3 3.5 57 5-63 45-103 (230)
6 PF13920 zf-C3HC4_3: Zinc fing 99.4 4.3E-13 9.4E-18 77.3 3.2 48 6-58 1-49 (50)
7 smart00504 Ubox Modified RING 99.3 1.3E-12 2.8E-17 78.5 4.3 46 7-57 1-46 (63)
8 PF13639 zf-RING_2: Ring finge 99.3 7.2E-13 1.6E-17 74.4 2.7 40 9-53 2-44 (44)
9 PHA02929 N1R/p28-like protein; 99.3 8.9E-13 1.9E-17 98.5 3.7 55 5-64 172-234 (238)
10 KOG0317 Predicted E3 ubiquitin 99.3 8.7E-13 1.9E-17 99.5 2.8 49 4-57 236-284 (293)
11 KOG0320 Predicted E3 ubiquitin 99.3 1.3E-12 2.9E-17 92.3 2.9 48 5-57 129-178 (187)
12 PHA02926 zinc finger-like prot 99.3 3.4E-12 7.4E-17 93.4 4.0 60 5-64 168-237 (242)
13 PF00097 zf-C3HC4: Zinc finger 99.3 3.9E-12 8.5E-17 70.2 3.4 40 10-52 1-41 (41)
14 TIGR00599 rad18 DNA repair pro 99.2 1.3E-11 2.7E-16 98.3 5.8 51 2-57 21-71 (397)
15 KOG0287 Postreplication repair 99.2 4.3E-12 9.4E-17 97.7 2.1 49 4-57 20-68 (442)
16 PF04564 U-box: U-box domain; 99.2 1.7E-11 3.7E-16 76.1 3.0 49 5-57 2-50 (73)
17 PF13445 zf-RING_UBOX: RING-ty 99.2 1.9E-11 4.2E-16 68.1 2.8 39 10-50 1-43 (43)
18 cd00162 RING RING-finger (Real 99.1 9E-11 1.9E-15 65.1 3.5 43 9-55 1-44 (45)
19 PF14835 zf-RING_6: zf-RING of 99.0 4.7E-11 1E-15 71.2 0.0 43 6-55 6-49 (65)
20 PF14634 zf-RING_5: zinc-RING 99.0 2E-10 4.2E-15 64.4 2.4 41 9-54 1-44 (44)
21 smart00184 RING Ring finger. E 99.0 4.8E-10 1E-14 60.0 3.6 39 10-52 1-39 (39)
22 COG5574 PEX10 RING-finger-cont 99.0 2.7E-10 5.9E-15 85.2 2.8 51 3-56 211-261 (271)
23 TIGR00570 cdk7 CDK-activating 98.9 1.5E-09 3.2E-14 83.6 5.6 49 6-58 2-55 (309)
24 COG5432 RAD18 RING-finger-cont 98.9 4.1E-10 8.8E-15 85.5 1.7 48 5-57 23-70 (391)
25 PF12678 zf-rbx1: RING-H2 zinc 98.9 1.6E-09 3.5E-14 67.2 3.1 41 8-53 20-73 (73)
26 KOG2177 Predicted E3 ubiquitin 98.9 6.9E-10 1.5E-14 83.9 1.3 46 4-54 10-55 (386)
27 KOG0311 Predicted E3 ubiquitin 98.7 2.5E-09 5.4E-14 83.0 0.4 48 6-57 42-90 (381)
28 PF12861 zf-Apc11: Anaphase-pr 98.6 6.1E-08 1.3E-12 61.3 3.3 50 6-57 20-82 (85)
29 KOG4628 Predicted E3 ubiquitin 98.6 5.3E-08 1.1E-12 76.3 3.5 47 8-58 230-279 (348)
30 KOG0978 E3 ubiquitin ligase in 98.5 2.2E-08 4.7E-13 84.2 1.0 46 8-57 644-689 (698)
31 KOG0802 E3 ubiquitin ligase [P 98.5 3.6E-08 7.9E-13 82.0 2.3 46 6-56 290-340 (543)
32 COG5243 HRD1 HRD ubiquitin lig 98.5 8.3E-08 1.8E-12 75.2 3.1 48 5-57 285-345 (491)
33 KOG1039 Predicted E3 ubiquitin 98.5 1.5E-07 3.3E-12 73.8 4.5 61 5-65 159-229 (344)
34 KOG0824 Predicted E3 ubiquitin 98.5 6.4E-08 1.4E-12 73.8 2.3 53 1-57 1-53 (324)
35 KOG2660 Locus-specific chromos 98.4 1.2E-07 2.6E-12 73.2 2.5 51 6-61 14-65 (331)
36 KOG4159 Predicted E3 ubiquitin 98.4 1.1E-07 2.3E-12 76.1 2.1 49 5-58 82-130 (398)
37 COG5152 Uncharacterized conser 98.4 7.6E-08 1.6E-12 69.6 0.8 45 8-57 197-241 (259)
38 COG5540 RING-finger-containing 98.4 2.9E-07 6.3E-12 70.5 3.2 46 6-56 322-371 (374)
39 KOG1002 Nucleotide excision re 98.4 1.6E-07 3.4E-12 76.7 1.7 52 6-57 535-586 (791)
40 COG5222 Uncharacterized conser 98.3 5.5E-07 1.2E-11 69.0 4.0 49 2-54 269-318 (427)
41 PF11789 zf-Nse: Zinc-finger o 98.3 3.7E-07 7.9E-12 53.9 2.3 47 2-51 6-53 (57)
42 KOG4172 Predicted E3 ubiquitin 98.3 1.8E-07 3.8E-12 53.9 0.2 49 7-59 7-56 (62)
43 KOG4265 Predicted E3 ubiquitin 98.2 1.7E-06 3.7E-11 67.5 3.5 52 5-61 288-340 (349)
44 KOG0297 TNF receptor-associate 98.1 1.2E-06 2.5E-11 70.4 1.9 49 4-57 18-67 (391)
45 KOG1813 Predicted E3 ubiquitin 98.1 6.8E-07 1.5E-11 68.1 0.5 46 8-58 242-287 (313)
46 KOG0804 Cytoplasmic Zn-finger 98.1 1.4E-06 3E-11 69.8 1.3 44 6-56 174-221 (493)
47 KOG2879 Predicted E3 ubiquitin 98.0 4.5E-06 9.8E-11 63.1 3.0 51 5-58 237-288 (298)
48 PF11793 FANCL_C: FANCL C-term 97.9 2.9E-06 6.2E-11 52.1 0.6 51 7-57 2-66 (70)
49 KOG4692 Predicted E3 ubiquitin 97.9 7.5E-06 1.6E-10 64.1 2.9 49 5-58 420-468 (489)
50 KOG1734 Predicted RING-contain 97.7 1.4E-05 3E-10 60.5 0.8 50 5-57 222-281 (328)
51 smart00744 RINGv The RING-vari 97.5 0.00017 3.7E-09 41.1 3.3 42 9-53 1-49 (49)
52 COG5219 Uncharacterized conser 97.5 5.2E-05 1.1E-09 65.9 1.6 48 7-57 1469-1523(1525)
53 KOG0828 Predicted E3 ubiquitin 97.5 6.5E-05 1.4E-09 61.2 2.1 49 5-57 569-634 (636)
54 KOG1645 RING-finger-containing 97.4 0.00014 2.9E-09 58.0 2.8 50 5-57 2-56 (463)
55 KOG1785 Tyrosine kinase negati 97.3 0.00012 2.7E-09 58.2 1.6 47 9-58 371-417 (563)
56 KOG4367 Predicted Zn-finger pr 97.2 0.00019 4.2E-09 57.8 2.3 38 5-42 2-39 (699)
57 KOG0825 PHD Zn-finger protein 97.2 7.9E-05 1.7E-09 63.6 -0.1 52 7-63 123-177 (1134)
58 KOG0827 Predicted E3 ubiquitin 97.2 0.00022 4.7E-09 56.6 2.2 49 7-57 4-56 (465)
59 KOG1493 Anaphase-promoting com 97.2 0.00012 2.5E-09 45.2 0.5 47 9-57 22-81 (84)
60 COG5194 APC11 Component of SCF 97.1 0.00052 1.1E-08 42.7 3.0 29 24-57 53-81 (88)
61 KOG1571 Predicted E3 ubiquitin 97.1 0.00025 5.5E-09 55.7 1.9 46 6-59 304-349 (355)
62 KOG4275 Predicted E3 ubiquitin 97.1 0.0001 2.2E-09 56.4 -0.4 42 7-57 300-342 (350)
63 PHA03096 p28-like protein; Pro 97.0 0.00074 1.6E-08 52.1 3.3 47 8-56 179-233 (284)
64 KOG1001 Helicase-like transcri 97.0 0.00031 6.8E-09 60.0 1.3 46 8-57 455-500 (674)
65 PF05290 Baculo_IE-1: Baculovi 96.9 0.00074 1.6E-08 46.1 2.6 50 7-58 80-133 (140)
66 KOG0826 Predicted E3 ubiquitin 96.9 0.00078 1.7E-08 52.4 2.9 47 4-55 297-344 (357)
67 COG5220 TFB3 Cdk activating ki 96.8 0.0013 2.9E-08 49.2 3.6 100 7-112 10-121 (314)
68 KOG1814 Predicted E3 ubiquitin 96.8 0.0023 5E-08 51.3 4.7 49 7-55 184-238 (445)
69 KOG3800 Predicted E3 ubiquitin 96.7 0.0018 3.9E-08 49.6 3.8 45 9-57 2-51 (300)
70 PF07800 DUF1644: Protein of u 96.7 0.0026 5.7E-08 44.7 4.1 58 6-63 1-97 (162)
71 PF14447 Prok-RING_4: Prokaryo 96.5 0.0013 2.9E-08 38.1 1.2 45 7-58 7-51 (55)
72 PF02891 zf-MIZ: MIZ/SP-RING z 96.4 0.001 2.2E-08 38.1 0.5 47 8-55 3-50 (50)
73 KOG4185 Predicted E3 ubiquitin 96.3 0.0023 4.9E-08 49.4 2.2 45 8-56 4-54 (296)
74 PF14570 zf-RING_4: RING/Ubox 96.3 0.003 6.5E-08 35.7 1.9 42 10-55 1-46 (48)
75 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.014 3E-07 44.5 5.4 53 5-63 111-169 (260)
76 KOG3039 Uncharacterized conser 96.0 0.0053 1.1E-07 46.2 2.5 48 5-57 219-270 (303)
77 KOG4739 Uncharacterized protei 96.0 0.0016 3.4E-08 48.7 -0.4 45 8-59 4-50 (233)
78 KOG2930 SCF ubiquitin ligase, 95.9 0.0059 1.3E-07 39.9 2.0 27 24-55 80-106 (114)
79 PF10272 Tmpp129: Putative tra 95.8 0.011 2.4E-07 47.1 3.5 34 25-58 311-352 (358)
80 COG5236 Uncharacterized conser 95.7 0.007 1.5E-07 47.7 2.1 50 5-57 59-108 (493)
81 PHA02825 LAP/PHD finger-like p 95.5 0.021 4.6E-07 40.2 3.8 53 1-57 1-59 (162)
82 KOG1941 Acetylcholine receptor 95.3 0.008 1.7E-07 48.1 1.3 48 7-57 365-416 (518)
83 KOG2817 Predicted E3 ubiquitin 95.2 0.016 3.5E-07 46.3 2.8 46 7-54 334-382 (394)
84 KOG3970 Predicted E3 ubiquitin 95.2 0.06 1.3E-06 40.2 5.5 51 6-56 49-104 (299)
85 KOG3579 Predicted E3 ubiquitin 95.0 0.015 3.3E-07 44.7 1.9 47 5-51 266-316 (352)
86 KOG0298 DEAD box-containing he 94.8 0.011 2.3E-07 53.5 0.7 47 6-57 1152-1199(1394)
87 KOG1428 Inhibitor of type V ad 94.6 0.032 6.9E-07 51.5 3.3 54 5-58 3484-3545(3738)
88 KOG4362 Transcriptional regula 94.6 0.0075 1.6E-07 51.4 -0.6 49 7-57 21-69 (684)
89 KOG3002 Zn finger protein [Gen 94.4 0.027 5.9E-07 43.9 2.1 43 7-57 48-91 (299)
90 KOG3161 Predicted E3 ubiquitin 94.2 0.018 3.9E-07 48.8 0.8 38 8-53 12-53 (861)
91 PF05883 Baculo_RING: Baculovi 93.8 0.03 6.5E-07 38.4 1.2 35 6-40 25-68 (134)
92 KOG2114 Vacuolar assembly/sort 93.8 0.031 6.6E-07 48.7 1.5 42 6-55 839-881 (933)
93 PF08746 zf-RING-like: RING-li 93.8 0.071 1.5E-06 29.4 2.4 40 10-52 1-43 (43)
94 KOG1815 Predicted E3 ubiquitin 93.4 0.06 1.3E-06 44.1 2.5 38 5-42 68-106 (444)
95 KOG2932 E3 ubiquitin ligase in 93.2 0.029 6.3E-07 43.7 0.3 42 9-57 92-134 (389)
96 KOG1812 Predicted E3 ubiquitin 93.0 0.074 1.6E-06 42.9 2.4 44 7-50 146-194 (384)
97 KOG3039 Uncharacterized conser 92.9 0.09 2E-06 39.8 2.6 34 8-41 44-77 (303)
98 KOG1952 Transcription factor N 92.8 0.071 1.5E-06 46.5 2.1 50 6-55 190-245 (950)
99 KOG3268 Predicted E3 ubiquitin 92.4 0.13 2.9E-06 37.0 2.7 53 6-58 164-229 (234)
100 PF07191 zinc-ribbons_6: zinc- 92.3 0.0048 1E-07 37.6 -4.0 46 7-62 1-46 (70)
101 KOG4445 Uncharacterized conser 91.1 0.3 6.6E-06 38.0 3.6 53 5-57 113-186 (368)
102 KOG3899 Uncharacterized conser 91.0 0.16 3.4E-06 39.4 2.0 34 25-58 325-366 (381)
103 COG5175 MOT2 Transcriptional r 90.9 0.16 3.6E-06 40.1 2.1 47 7-57 14-64 (480)
104 KOG1100 Predicted E3 ubiquitin 90.9 0.093 2E-06 38.8 0.7 39 10-57 161-200 (207)
105 PHA02862 5L protein; Provision 90.3 0.31 6.8E-06 33.9 2.8 47 7-57 2-53 (156)
106 KOG1940 Zn-finger protein [Gen 90.3 0.17 3.7E-06 38.9 1.7 42 8-54 159-204 (276)
107 PF03854 zf-P11: P-11 zinc fin 90.2 0.12 2.6E-06 29.1 0.6 32 21-57 14-46 (50)
108 KOG3053 Uncharacterized conser 89.7 0.2 4.3E-06 38.1 1.6 61 4-64 17-89 (293)
109 PF12906 RINGv: RING-variant d 86.8 0.57 1.2E-05 26.2 1.9 40 10-52 1-47 (47)
110 COG5109 Uncharacterized conser 85.7 0.61 1.3E-05 36.6 2.2 45 8-54 337-384 (396)
111 COG5183 SSM4 Protein involved 82.8 2 4.2E-05 38.0 4.1 51 4-57 9-66 (1175)
112 KOG0825 PHD Zn-finger protein 80.2 1.2 2.6E-05 39.1 2.0 60 4-63 93-160 (1134)
113 PF10571 UPF0547: Uncharacteri 78.3 1.1 2.5E-05 21.8 0.8 9 9-17 2-10 (26)
114 PF06906 DUF1272: Protein of u 76.7 1.9 4.1E-05 25.1 1.5 41 9-56 7-51 (57)
115 PF05605 zf-Di19: Drought indu 76.3 4 8.7E-05 23.2 2.9 13 6-18 1-13 (54)
116 KOG2034 Vacuolar sorting prote 76.0 1.9 4.1E-05 38.2 2.0 36 5-40 815-852 (911)
117 COG0068 HypF Hydrogenase matur 75.9 1.6 3.4E-05 37.9 1.5 55 4-58 98-185 (750)
118 PF01363 FYVE: FYVE zinc finge 75.3 0.94 2E-05 27.0 0.0 31 6-36 8-42 (69)
119 KOG3113 Uncharacterized conser 73.2 4.2 9E-05 31.1 3.0 43 8-57 112-158 (293)
120 COG3813 Uncharacterized protei 72.9 2.4 5.1E-05 26.1 1.4 26 25-57 27-52 (84)
121 KOG0309 Conserved WD40 repeat- 71.4 2.9 6.4E-05 36.7 2.1 39 8-51 1029-1069(1081)
122 KOG3842 Adaptor protein Pellin 68.9 6.4 0.00014 31.1 3.3 51 6-57 340-414 (429)
123 smart00064 FYVE Protein presen 68.7 4.7 0.0001 23.8 2.1 33 7-39 10-46 (68)
124 KOG0827 Predicted E3 ubiquitin 68.2 0.56 1.2E-05 37.8 -2.6 45 8-57 197-245 (465)
125 PF06844 DUF1244: Protein of u 68.0 3.7 8.1E-05 24.7 1.5 14 28-41 11-24 (68)
126 PF10235 Cript: Microtubule-as 67.9 3 6.5E-05 26.7 1.1 36 8-57 45-80 (90)
127 KOG2979 Protein involved in DN 67.1 3.1 6.7E-05 31.7 1.2 46 7-55 176-222 (262)
128 PF10146 zf-C4H2: Zinc finger- 65.5 5.1 0.00011 30.1 2.2 25 29-58 196-220 (230)
129 KOG3799 Rab3 effector RIM1 and 63.5 0.83 1.8E-05 31.5 -2.2 21 3-27 61-82 (169)
130 PF14569 zf-UDP: Zinc-binding 62.9 12 0.00026 23.3 3.1 48 6-57 8-62 (80)
131 TIGR00143 hypF [NiFe] hydrogen 62.2 4.6 0.0001 35.3 1.6 55 4-58 65-152 (711)
132 PLN02189 cellulose synthase 62.0 11 0.00025 34.2 3.9 46 8-57 35-87 (1040)
133 PLN02436 cellulose synthase A 61.7 10 0.00022 34.7 3.6 46 8-57 37-89 (1094)
134 cd00065 FYVE FYVE domain; Zinc 60.8 6.3 0.00014 22.3 1.5 31 8-38 3-37 (57)
135 KOG1812 Predicted E3 ubiquitin 60.6 4.8 0.0001 32.5 1.3 35 7-41 306-345 (384)
136 PF14446 Prok-RING_1: Prokaryo 59.9 14 0.0003 21.4 2.8 31 6-36 4-38 (54)
137 KOG2068 MOT2 transcription fac 59.7 6.2 0.00013 31.2 1.7 45 8-57 250-298 (327)
138 smart00249 PHD PHD zinc finger 58.8 4 8.8E-05 21.5 0.4 44 9-52 1-47 (47)
139 KOG4185 Predicted E3 ubiquitin 57.5 2.7 5.9E-05 32.3 -0.5 44 8-55 208-265 (296)
140 PF10497 zf-4CXXC_R1: Zinc-fin 57.3 16 0.00035 24.0 3.2 30 26-55 37-70 (105)
141 KOG4718 Non-SMC (structural ma 54.6 7.4 0.00016 29.0 1.3 42 8-54 182-224 (235)
142 COG4647 AcxC Acetone carboxyla 53.9 7 0.00015 26.8 1.0 20 12-31 62-81 (165)
143 KOG0824 Predicted E3 ubiquitin 53.6 4.9 0.00011 31.4 0.3 46 8-58 106-152 (324)
144 KOG4451 Uncharacterized conser 53.3 11 0.00023 28.5 2.0 25 29-58 251-275 (286)
145 PF11809 DUF3330: Domain of un 52.5 6.9 0.00015 23.6 0.7 34 8-41 12-51 (70)
146 PF04710 Pellino: Pellino; In 51.8 4.8 0.0001 32.6 0.0 32 21-55 305-337 (416)
147 PF04423 Rad50_zn_hook: Rad50 51.7 6 0.00013 22.5 0.4 10 48-57 22-31 (54)
148 PF14353 CpXC: CpXC protein 50.8 15 0.00033 24.5 2.4 48 8-57 2-49 (128)
149 PLN02400 cellulose synthase 50.6 15 0.00032 33.7 2.8 48 8-59 37-91 (1085)
150 PF10083 DUF2321: Uncharacteri 50.5 9 0.00019 27.1 1.2 25 25-57 26-50 (158)
151 PLN02638 cellulose synthase A 50.2 27 0.00058 32.1 4.3 47 8-58 18-71 (1079)
152 PF09538 FYDLN_acid: Protein o 49.3 13 0.00029 24.6 1.8 12 46-57 26-37 (108)
153 KOG2231 Predicted E3 ubiquitin 49.0 16 0.00035 31.7 2.7 49 9-57 2-52 (669)
154 smart00647 IBR In Between Ring 48.5 3 6.5E-05 24.0 -1.3 14 24-37 45-58 (64)
155 PF14369 zf-RING_3: zinc-finge 48.3 3 6.4E-05 21.8 -1.2 28 28-55 3-30 (35)
156 KOG2169 Zn-finger transcriptio 48.2 13 0.00029 32.1 2.1 49 8-57 307-356 (636)
157 PF02318 FYVE_2: FYVE-type zin 47.7 10 0.00022 25.3 1.0 46 6-55 53-103 (118)
158 smart00834 CxxC_CXXC_SSSS Puta 46.3 9 0.0002 20.0 0.5 12 46-57 26-37 (41)
159 PF04216 FdhE: Protein involve 45.2 3.6 7.9E-05 31.7 -1.6 44 7-55 172-220 (290)
160 PF10186 Atg14: UV radiation r 44.1 15 0.00033 27.8 1.7 23 9-39 1-23 (302)
161 TIGR00622 ssl1 transcription f 43.8 27 0.00058 23.3 2.6 41 8-53 56-110 (112)
162 PRK04023 DNA polymerase II lar 43.7 19 0.00041 32.9 2.3 47 4-57 623-674 (1121)
163 PF06827 zf-FPG_IleRS: Zinc fi 42.8 7.3 0.00016 19.2 -0.2 26 8-33 2-27 (30)
164 COG3492 Uncharacterized protei 42.1 13 0.00028 23.9 0.9 15 28-42 42-56 (104)
165 PF08273 Prim_Zn_Ribbon: Zinc- 41.7 11 0.00025 20.3 0.5 26 8-33 4-32 (40)
166 PF10038 DUF2274: Protein of u 40.0 28 0.00061 21.1 2.1 40 77-122 25-64 (69)
167 KOG0314 Predicted E3 ubiquitin 39.9 6.9 0.00015 32.3 -0.8 44 5-54 217-263 (448)
168 PF09237 GAGA: GAGA factor; I 39.0 6.9 0.00015 22.4 -0.7 20 38-57 16-35 (54)
169 smart00132 LIM Zinc-binding do 38.8 22 0.00048 17.7 1.4 11 9-19 1-11 (39)
170 PRK03564 formate dehydrogenase 38.7 12 0.00026 29.4 0.4 44 6-54 186-234 (309)
171 smart00734 ZnF_Rad18 Rad18-lik 38.5 14 0.00031 17.8 0.5 8 49-56 4-11 (26)
172 KOG2113 Predicted RNA binding 37.9 26 0.00057 27.8 2.1 47 7-60 343-390 (394)
173 PTZ00303 phosphatidylinositol 37.7 19 0.00042 32.2 1.5 31 8-38 461-500 (1374)
174 TIGR01562 FdhE formate dehydro 37.1 11 0.00023 29.7 -0.2 44 7-55 184-233 (305)
175 PF08369 PCP_red: Proto-chloro 36.5 32 0.00069 18.9 1.8 18 98-115 6-23 (45)
176 KOG1609 Protein involved in mR 36.1 24 0.00052 27.0 1.7 51 4-57 75-134 (323)
177 PF09297 zf-NADH-PPase: NADH p 36.1 3.3 7.1E-05 20.9 -2.2 27 27-54 3-29 (32)
178 PLN02915 cellulose synthase A 36.0 59 0.0013 29.9 4.2 49 6-58 14-69 (1044)
179 PF13719 zinc_ribbon_5: zinc-r 34.3 15 0.00032 19.2 0.2 12 8-19 3-14 (37)
180 KOG2041 WD40 repeat protein [G 34.3 19 0.0004 32.0 0.8 53 4-57 1128-1185(1189)
181 cd00730 rubredoxin Rubredoxin; 33.6 18 0.0004 20.4 0.5 10 5-14 32-41 (50)
182 PF13240 zinc_ribbon_2: zinc-r 33.0 4.2 9.1E-05 19.1 -1.9 7 48-54 15-21 (23)
183 PF09723 Zn-ribbon_8: Zinc rib 32.1 18 0.00039 19.4 0.3 10 45-54 25-34 (42)
184 PF07975 C1_4: TFIIH C1-like d 31.8 24 0.00053 20.1 0.8 24 24-52 26-49 (51)
185 cd00350 rubredoxin_like Rubred 31.7 28 0.00061 17.6 1.0 9 47-55 18-26 (33)
186 smart00290 ZnF_UBP Ubiquitin C 31.7 32 0.00069 18.8 1.3 23 10-32 2-24 (50)
187 TIGR02300 FYDLN_acid conserved 30.4 35 0.00076 23.3 1.5 10 47-56 27-36 (129)
188 PF01485 IBR: IBR domain; Int 30.3 15 0.00033 20.9 -0.2 32 6-37 17-58 (64)
189 PF13913 zf-C2HC_2: zinc-finge 29.9 33 0.00072 16.2 1.0 11 47-57 3-13 (25)
190 KOG4604 Uncharacterized conser 29.1 30 0.00065 22.1 1.0 48 68-117 10-57 (91)
191 PRK00418 DNA gyrase inhibitor; 28.8 29 0.00064 20.6 0.8 11 47-57 7-17 (62)
192 TIGR02098 MJ0042_CXXC MJ0042 f 28.5 34 0.00075 17.6 1.0 11 46-56 25-35 (38)
193 PF07503 zf-HYPF: HypF finger; 28.4 41 0.00089 17.5 1.3 29 29-57 1-32 (35)
194 PRK11595 DNA utilization prote 28.3 40 0.00086 25.0 1.7 38 9-56 7-44 (227)
195 KOG2462 C2H2-type Zn-finger pr 28.2 59 0.0013 25.2 2.6 35 8-58 188-227 (279)
196 PF13451 zf-trcl: Probable zin 27.8 25 0.00054 19.9 0.4 31 25-55 10-42 (49)
197 TIGR02605 CxxC_CxxC_SSSS putat 27.6 26 0.00057 19.4 0.5 10 45-54 25-34 (52)
198 PF00301 Rubredoxin: Rubredoxi 27.5 23 0.0005 19.8 0.2 10 5-14 32-41 (47)
199 PF02701 zf-Dof: Dof domain, z 27.1 1.4E+02 0.0031 17.7 3.6 38 4-42 2-44 (63)
200 COG5639 Uncharacterized conser 27.1 83 0.0018 19.3 2.6 21 102-122 44-64 (77)
201 smart00154 ZnF_AN1 AN1-like Zi 27.1 45 0.00097 17.6 1.3 22 10-31 1-24 (39)
202 PF06676 DUF1178: Protein of u 26.7 17 0.00036 25.5 -0.5 26 25-55 10-41 (148)
203 PF13901 DUF4206: Domain of un 26.3 34 0.00073 25.0 1.0 38 7-54 152-197 (202)
204 PF07125 DUF1378: Protein of u 26.1 75 0.0016 18.4 2.1 18 124-141 3-20 (59)
205 COG2816 NPY1 NTP pyrophosphohy 25.8 16 0.00035 28.3 -0.8 31 25-56 109-139 (279)
206 PF03884 DUF329: Domain of unk 25.3 23 0.00051 20.6 -0.0 11 48-58 4-14 (57)
207 PHA03164 hypothetical protein; 25.2 1.3E+02 0.0028 18.7 3.2 45 95-140 32-76 (88)
208 PF14311 DUF4379: Domain of un 24.9 49 0.0011 18.6 1.3 6 47-52 50-55 (55)
209 COG4306 Uncharacterized protei 24.2 43 0.00093 22.9 1.1 23 27-57 28-50 (160)
210 COG3364 Zn-ribbon containing p 23.8 49 0.0011 21.8 1.2 32 22-62 5-36 (112)
211 KOG0269 WD40 repeat-containing 23.3 82 0.0018 28.0 2.8 34 9-42 781-816 (839)
212 COG5627 MMS21 DNA repair prote 23.1 36 0.00078 25.9 0.6 34 7-40 189-223 (275)
213 PF13465 zf-H2C2_2: Zinc-finge 23.1 36 0.00077 16.1 0.4 12 45-56 13-24 (26)
214 PRK11088 rrmA 23S rRNA methylt 22.9 53 0.0011 24.8 1.5 11 8-18 3-13 (272)
215 PF00412 LIM: LIM domain; Int 22.6 90 0.002 17.2 2.2 29 8-36 27-56 (58)
216 PF01428 zf-AN1: AN1-like Zinc 22.2 54 0.0012 17.6 1.1 20 13-32 6-26 (43)
217 PLN02248 cellulose synthase-li 22.0 62 0.0013 30.0 1.9 29 24-57 149-177 (1135)
218 PF00643 zf-B_box: B-box zinc 21.8 73 0.0016 16.5 1.6 30 7-36 3-32 (42)
219 KOG2857 Predicted MYND Zn-fing 21.5 2.7E+02 0.0059 19.5 4.6 30 7-36 5-35 (157)
220 PLN02195 cellulose synthase A 21.2 1.2E+02 0.0026 27.8 3.5 47 7-57 6-59 (977)
221 PF00096 zf-C2H2: Zinc finger, 21.0 32 0.0007 15.2 0.0 9 10-18 3-11 (23)
222 PF12132 DUF3587: Protein of u 20.9 77 0.0017 23.4 2.0 25 16-40 150-178 (199)
223 PF06937 EURL: EURL protein; 20.8 81 0.0018 24.4 2.1 35 9-50 32-74 (285)
224 KOG2807 RNA polymerase II tran 20.7 84 0.0018 25.1 2.2 39 10-53 333-374 (378)
225 KOG0289 mRNA splicing factor [ 20.2 1.5E+02 0.0033 24.7 3.6 44 9-57 2-46 (506)
226 PF08882 Acetone_carb_G: Aceto 20.1 56 0.0012 21.8 1.0 10 22-31 26-35 (112)
No 1
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.3e-19 Score=145.02 Aligned_cols=132 Identities=27% Similarity=0.534 Sum_probs=108.2
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc--cccCCcccccCCCchHhhHHHHH--H
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL--LIPNDDSLRQRHDPAVGDILQKV--E 82 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~--l~~~~~~~~~~~~~~~~~~~~~i--~ 82 (142)
+..||||++....|+.|+|||+||..||.+||..+...+...||+|+..+.. +.|..+... +...++....+.. .
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~-qkke~l~~~~~~ng~~ 264 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD-QKKEELKLHQDPNGIP 264 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc-cccHHHHHHhcccCCC
Confidence 7899999999999999999999999999999999877888899999999985 777765432 2222222222222 3
Q ss_pred HHHHhhCCCCCCcchhhhhhchhHHHHHHHHHHhCcCCCchhhHHHHHHHHHHHHHhhc
Q 032386 83 SYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAILTFFSYL 141 (142)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~l~d~p~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~y~ 141 (142)
.||+.|++++ ++.+.+.+.|++.+++.+++.++. +..+.++.+.++..+..+...|+
T Consensus 265 ~~~r~F~~d~-~r~~p~fl~dl~~~a~~~i~~~~~-~~~l~i~~~~~i~~v~i~~~~~~ 321 (513)
T KOG2164|consen 265 DYNRRFSGDP-ARFVPDFLMDLPTYARINIRNMFN-NHILTIVDQVCIAAVFICQYLSF 321 (513)
T ss_pred ccccceecCc-ccccHHHHHhHHHHHHHHHHHhhc-ccceeehhhHhHHHHHHHHHhcc
Confidence 8999999876 478899999999999999999999 68999999999987777776664
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.63 E-value=1.8e-16 Score=88.26 Aligned_cols=42 Identities=33% Similarity=0.946 Sum_probs=33.0
Q ss_pred cccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 10 CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
||||+++|++|++++|||+||.+||.++|+.... ....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~-~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG-SGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS-ST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCC-cCCCCcCC
Confidence 8999999999999999999999999999987652 23689987
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.47 E-value=4.1e-14 Score=102.00 Aligned_cols=53 Identities=23% Similarity=0.563 Sum_probs=44.7
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCC-----------CCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS-----------TLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-----------~~~~~~CP~Cr~~~~ 57 (142)
.++++|+||++.+++|+.++|||.||..||.+|+..+. ..+...||+||..++
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 45689999999999999999999999999999986431 123468999999987
No 4
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.40 E-value=1.8e-13 Score=74.96 Aligned_cols=38 Identities=32% Similarity=0.955 Sum_probs=32.5
Q ss_pred cccccccccCc-eeecCCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 10 CSVCHGNFNVP-CQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 10 CpIC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
|+||++.+.+| +.++|||+||.+|+.+|++.. .+||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~-----~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN-----PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT-----SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc-----CCCcCC
Confidence 89999999999 578999999999999998874 389987
No 5
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2e-13 Score=100.25 Aligned_cols=57 Identities=21% Similarity=0.525 Sum_probs=47.8
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc--ccccCC
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT--LLIPND 63 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~--~l~~~~ 63 (142)
...+.|-||+|..++||.|.|||.||+.||.+|+.... ....||+|+..++ .++|..
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~--~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRP--NSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcC--CCeeCCccccccccceEEeee
Confidence 44589999999999999999999999999999998764 2347899999887 455543
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.37 E-value=4.3e-13 Score=77.33 Aligned_cols=48 Identities=27% Similarity=0.709 Sum_probs=40.7
Q ss_pred CccccccccccccCceeecCCCc-ccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
++..|+||++...+++.++|||. ||..|+.+|++... .||+||++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-----~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKK-----KCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTS-----BBTTTTBB-SE
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCC-----CCCcCChhhcC
Confidence 46789999999999999999999 99999999998554 89999998653
No 7
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.34 E-value=1.3e-12 Score=78.53 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=41.6
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++.||||.+.+.+|+.++|||+||.+||.+|++... .||.|++.++
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~-----~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHG-----TDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCC-----CCCCCcCCCC
Confidence 468999999999999999999999999999998743 8999998764
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.34 E-value=7.2e-13 Score=74.39 Aligned_cols=40 Identities=30% Similarity=0.790 Sum_probs=34.5
Q ss_pred cccccccccc---CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCc
Q 032386 9 VCSVCHGNFN---VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53 (142)
Q Consensus 9 ~CpIC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr 53 (142)
+|+||++.+. ..+.++|||.||.+|+.+|++... +||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-----~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-----SCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-----B-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-----cCCccC
Confidence 7999999884 567789999999999999999864 999997
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.33 E-value=8.9e-13 Score=98.48 Aligned_cols=55 Identities=25% Similarity=0.574 Sum_probs=45.0
Q ss_pred CCccccccccccccC--------ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccccccCCc
Q 032386 5 PCGDVCSVCHGNFNV--------PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPNDD 64 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~--------pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~~~~ 64 (142)
.++.+|+||++.+.+ ++.++|+|.||..||.+|++..+ +||+||..+..+.+++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~-----tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN-----TCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC-----CCCCCCCEeeEEeeeee
Confidence 456899999998664 35578999999999999987654 89999999887766653
No 10
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.7e-13 Score=99.53 Aligned_cols=49 Identities=35% Similarity=0.839 Sum_probs=44.0
Q ss_pred CCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++.+..|.+|++...+|..|+|||.||++||..|...++ .||.||+.+.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-----eCPlCR~~~~ 284 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-----ECPLCREKFQ 284 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-----CCCcccccCC
Confidence 456689999999999999999999999999999988775 7999998754
No 11
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.3e-12 Score=92.35 Aligned_cols=48 Identities=31% Similarity=0.835 Sum_probs=41.5
Q ss_pred CCccccccccccccC--ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNV--PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~--pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+..+.||||++.+.+ |+.|+|||.||..||...++.+. .||+|++.++
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-----~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-----KCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-----CCCCcccccc
Confidence 344799999998864 67799999999999999998876 8999998765
No 12
>PHA02926 zinc finger-like protein; Provisional
Probab=99.27 E-value=3.4e-12 Score=93.37 Aligned_cols=60 Identities=22% Similarity=0.468 Sum_probs=46.7
Q ss_pred CCcccccccccccc---------CceeecCCCcccHhHHHHHHHhCCC-CCCCCCCCCcccccccccCCc
Q 032386 5 PCGDVCSVCHGNFN---------VPCQANCSHWFCGNCIMLVWDHGST-LQACRCPLCRRRITLLIPNDD 64 (142)
Q Consensus 5 ~~~~~CpIC~~~~~---------~pv~~~CgH~fC~~Ci~~~~~~~~~-~~~~~CP~Cr~~~~~l~~~~~ 64 (142)
.++.+|+||++... .++..+|+|.||..||.+|.+.... +...+||+||..+..+.|++.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf 237 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKF 237 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccccc
Confidence 46789999999753 2466789999999999998775321 234579999999998887763
No 13
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.27 E-value=3.9e-12 Score=70.20 Aligned_cols=40 Identities=33% Similarity=0.958 Sum_probs=35.5
Q ss_pred cccccccccCce-eecCCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 10 CSVCHGNFNVPC-QANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 10 CpIC~~~~~~pv-~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
|+||++.+.+|+ .++|||.||..|+.+|++.. +...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~---~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS---GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT---SSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhc---CCccCCcC
Confidence 899999999999 78999999999999999962 34589988
No 14
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=1.3e-11 Score=98.30 Aligned_cols=51 Identities=33% Similarity=0.734 Sum_probs=45.2
Q ss_pred CCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+..++.+.|+||.+.+.+|+.++|||.||..||..|+.... .||+|+..+.
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~-----~CP~Cr~~~~ 71 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQP-----KCPLCRAEDQ 71 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCC-----CCCCCCCccc
Confidence 44567799999999999999999999999999999997643 7999999865
No 15
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.21 E-value=4.3e-12 Score=97.73 Aligned_cols=49 Identities=33% Similarity=0.672 Sum_probs=44.1
Q ss_pred CCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.++-+.|.||.++|..|+.|+|+|+||.-||+.++...+ .||.|+..+.
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p-----~CP~C~~~~~ 68 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKP-----QCPTCCVTVT 68 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCC-----CCCceecccc
Confidence 345589999999999999999999999999999999876 8999998744
No 16
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.17 E-value=1.7e-11 Score=76.11 Aligned_cols=49 Identities=14% Similarity=0.225 Sum_probs=40.0
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
|+++.|||+.+++.+||.+++||+|+.++|.+|++... ..||.++++++
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~----~~~P~t~~~l~ 50 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNG----GTDPFTRQPLS 50 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTS----SB-TTT-SB-S
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCC----CCCCCCCCcCC
Confidence 68899999999999999999999999999999998832 48999998866
No 17
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.17 E-value=1.9e-11 Score=68.08 Aligned_cols=39 Identities=28% Similarity=0.878 Sum_probs=24.0
Q ss_pred cccccccccC----ceeecCCCcccHhHHHHHHHhCCCCCCCCCC
Q 032386 10 CSVCHGNFNV----PCQANCSHWFCGNCIMLVWDHGSTLQACRCP 50 (142)
Q Consensus 10 CpIC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP 50 (142)
||||.+ +.+ |+.++|||+||.+|+.+++..+. .+..+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~-~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSD-RNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S--S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCC-CCeeeCc
Confidence 899999 877 99999999999999999988753 3456787
No 18
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.10 E-value=9e-11 Score=65.06 Aligned_cols=43 Identities=37% Similarity=0.884 Sum_probs=36.6
Q ss_pred ccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 9 VCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.|+||++.+.+++.+. |||.||..|+..|++... ..||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~----~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGK----NTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCc----CCCCCCCCc
Confidence 5999999997777766 999999999999988732 489999875
No 19
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.02 E-value=4.7e-11 Score=71.18 Aligned_cols=43 Identities=30% Similarity=0.736 Sum_probs=24.2
Q ss_pred CccccccccccccCcee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 6 CGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
+-+.|++|.+++++||. ..|.|.||..||...+.. .||+|+.+
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~-------~CPvC~~P 49 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS-------ECPVCHTP 49 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT-------B-SSS--B
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC-------CCCCcCCh
Confidence 44789999999999987 569999999999774332 69999986
No 20
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.01 E-value=2e-10 Score=64.45 Aligned_cols=41 Identities=29% Similarity=0.991 Sum_probs=33.7
Q ss_pred ccccccccc---cCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 9 VCSVCHGNF---NVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 9 ~CpIC~~~~---~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
.|+||++.+ ..+..++|||+||.+|+.+.. . ....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~----~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-G----KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-C----CCCCCcCCCC
Confidence 599999988 357889999999999999976 2 2358999985
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=99.00 E-value=4.8e-10 Score=60.03 Aligned_cols=39 Identities=33% Similarity=0.931 Sum_probs=34.2
Q ss_pred cccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 10 CSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 10 CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
|+||++....++.++|||.||..|+..|++... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~----~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGN----NTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCc----CCCCCC
Confidence 899999999999999999999999999988332 479987
No 22
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-10 Score=85.21 Aligned_cols=51 Identities=31% Similarity=0.808 Sum_probs=42.1
Q ss_pred CCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
.|+.+..|+||++....|..++|||.||..||...|..+. .-.||.||+.+
T Consensus 211 ip~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k---~~~CplCRak~ 261 (271)
T COG5574 211 IPLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK---YEFCPLCRAKV 261 (271)
T ss_pred ccccccceeeeecccCCcccccccchhhHHHHHHHHHhhc---cccCchhhhhc
Confidence 3577899999999999999999999999999999444432 12699999863
No 23
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=1.5e-09 Score=83.64 Aligned_cols=49 Identities=27% Similarity=0.707 Sum_probs=37.3
Q ss_pred Ccccccccccc-ccCce---ee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 6 CGDVCSVCHGN-FNVPC---QA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 6 ~~~~CpIC~~~-~~~pv---~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
++..||+|... ...|- .+ +|||.||.+|+...|..++ ..||.|+..+..
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~----~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGS----GSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCC----CCCCCCCCccch
Confidence 46789999994 22332 23 5999999999999986643 489999988763
No 24
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.91 E-value=4.1e-10 Score=85.45 Aligned_cols=48 Identities=29% Similarity=0.769 Sum_probs=43.2
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.-+.|-||.+.+..|+.|+|||+||.-||..++...+ .||+||....
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp-----~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQP-----FCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcCCC-----CCccccccHH
Confidence 44478999999999999999999999999999998876 8999997754
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.87 E-value=1.6e-09 Score=67.17 Aligned_cols=41 Identities=34% Similarity=0.831 Sum_probs=32.3
Q ss_pred cccccccccccC------------c-eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCc
Q 032386 8 DVCSVCHGNFNV------------P-CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53 (142)
Q Consensus 8 ~~CpIC~~~~~~------------p-v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr 53 (142)
..|+||++.+.+ + +..+|||.|+..||.+|++... +||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-----~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-----TCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-----B-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-----cCCCCC
Confidence 359999998832 2 3347999999999999998765 999997
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.9e-10 Score=83.85 Aligned_cols=46 Identities=33% Similarity=0.881 Sum_probs=40.9
Q ss_pred CCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
..+...|+||++.+..|+.++|||+||..|+..+|. . ...||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~----~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-G----PLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-C----CcCCcccCC
Confidence 457789999999999998899999999999999998 2 368999993
No 27
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.5e-09 Score=82.99 Aligned_cols=48 Identities=27% Similarity=0.769 Sum_probs=42.5
Q ss_pred CccccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.++.||||+++++..++++ |+|.||.+||-.-++.+. -.||.||+.+.
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn----~ecptcRk~l~ 90 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN----NECPTCRKKLV 90 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC----CCCchHHhhcc
Confidence 4579999999999999987 999999999988887765 48999999876
No 28
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.57 E-value=6.1e-08 Score=61.28 Aligned_cols=50 Identities=34% Similarity=0.724 Sum_probs=37.9
Q ss_pred Ccccccccccccc-----------C-ceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFN-----------V-PCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~-----------~-pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+|..|+||...|. + |+.. .|+|.|...||.+|+++... ...||+||+...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~--~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS--KGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC--CCCCCCcCCeee
Confidence 4678888887774 1 3333 59999999999999987532 349999998754
No 29
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=5.3e-08 Score=76.27 Aligned_cols=47 Identities=32% Similarity=0.677 Sum_probs=39.7
Q ss_pred cccccccccccCc---eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 8 DVCSVCHGNFNVP---CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 8 ~~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
.+|.||+|.+.+. ..+||+|.|...||..|+.+.. ..||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r----~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR----TFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC----ccCCCCCCcCCC
Confidence 4999999998753 4489999999999999998864 269999998664
No 30
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.2e-08 Score=84.25 Aligned_cols=46 Identities=26% Similarity=0.743 Sum_probs=41.4
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.||.|.+...+.+.+.|||.||..|+.+...... .+||.|...|+
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRq----RKCP~Cn~aFg 689 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQ----RKCPKCNAAFG 689 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhc----CCCCCCCCCCC
Confidence 68999999999999999999999999999887654 58999999865
No 31
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=3.6e-08 Score=82.04 Aligned_cols=46 Identities=24% Similarity=0.759 Sum_probs=41.5
Q ss_pred CccccccccccccC-----ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 6 CGDVCSVCHGNFNV-----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 6 ~~~~CpIC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
.+..|+||.+.+.. |..++|||.|+..|+.+|+++.. +||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q-----tCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ-----TCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC-----cCCcchhhh
Confidence 37899999999987 78899999999999999999976 999999843
No 32
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=8.3e-08 Score=75.22 Aligned_cols=48 Identities=25% Similarity=0.721 Sum_probs=41.1
Q ss_pred CCcccccccccc-ccC------------ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGN-FNV------------PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~-~~~------------pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
-+|..|.||+|- +.. |..++|||.+...|++.|.+... +||.||.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ-----TCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ-----TCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc-----CCCcccCccc
Confidence 467899999996 433 48899999999999999999876 9999999854
No 33
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.5e-07 Score=73.84 Aligned_cols=61 Identities=26% Similarity=0.552 Sum_probs=45.4
Q ss_pred CCccccccccccccCce-----e---ecCCCcccHhHHHHHHHhCC--CCCCCCCCCCcccccccccCCcc
Q 032386 5 PCGDVCSVCHGNFNVPC-----Q---ANCSHWFCGNCIMLVWDHGS--TLQACRCPLCRRRITLLIPNDDS 65 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv-----~---~~CgH~fC~~Ci~~~~~~~~--~~~~~~CP~Cr~~~~~l~~~~~~ 65 (142)
.++..|.||++...+.. . .+|.|.||..||..|-.... ..-...||.||.....+.|...+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~W 229 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFW 229 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccccee
Confidence 45789999999876554 2 67999999999999763322 11124899999999888887533
No 34
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.4e-08 Score=73.83 Aligned_cols=53 Identities=28% Similarity=0.553 Sum_probs=45.3
Q ss_pred CCCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 1 MEGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 1 ~~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
|.+.--+.+|+||+....-|+.+.|+|.||.-||........ .+|++||.++.
T Consensus 1 ~ap~~~~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk----~~CavCR~pid 53 (324)
T KOG0824|consen 1 MAPRTKKKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDK----KTCAVCRFPID 53 (324)
T ss_pred CCCcccCCcceeeeccCCcCccccccchhhhhhhcchhhcCC----CCCceecCCCC
Confidence 456666789999999999999999999999999987655543 47999999987
No 35
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.43 E-value=1.2e-07 Score=73.18 Aligned_cols=51 Identities=27% Similarity=0.598 Sum_probs=43.8
Q ss_pred CccccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCccccccccc
Q 032386 6 CGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIP 61 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~ 61 (142)
...+|.+|.+++.++.++. |-|+||.+||.+++.... .||+|...+..-.|
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~-----~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESK-----YCPTCDIVIHKTHP 65 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhc-----cCCccceeccCccc
Confidence 3468999999999998866 999999999999999865 89999988765433
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.1e-07 Score=76.11 Aligned_cols=49 Identities=31% Similarity=0.714 Sum_probs=43.3
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
.+++.|.||+..+..|+.++|||+||..||.+.+.+.. .||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~-----~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQET-----ECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCC-----CCccccccccc
Confidence 46789999999999999999999999999999777654 89999987654
No 37
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.40 E-value=7.6e-08 Score=69.59 Aligned_cols=45 Identities=24% Similarity=0.835 Sum_probs=40.6
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|.||...+..||.+.|||.||..|..+-.+.++ .|-+|.+...
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~-----~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGD-----ECGVCGKATY 241 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhccCC-----cceecchhhc
Confidence 69999999999999999999999999998888775 8999987643
No 38
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.9e-07 Score=70.46 Aligned_cols=46 Identities=30% Similarity=0.631 Sum_probs=37.9
Q ss_pred CccccccccccccC---ceeecCCCcccHhHHHHHHH-hCCCCCCCCCCCCcccc
Q 032386 6 CGDVCSVCHGNFNV---PCQANCSHWFCGNCIMLVWD-HGSTLQACRCPLCRRRI 56 (142)
Q Consensus 6 ~~~~CpIC~~~~~~---pv~~~CgH~fC~~Ci~~~~~-~~~~~~~~~CP~Cr~~~ 56 (142)
-+.+|.||++.+.+ -+.+||.|.|...|+.+|+. .+. .||+||..+
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~-----~CPvCrt~i 371 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSN-----KCPVCRTAI 371 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcc-----cCCccCCCC
Confidence 34789999998753 35689999999999999988 443 899999874
No 39
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.36 E-value=1.6e-07 Score=76.66 Aligned_cols=52 Identities=23% Similarity=0.519 Sum_probs=46.6
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+..|.+|.+...+++.+.|.|.||.-|+.+|......+...+||+|...++
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 4479999999999999999999999999999998776666789999988766
No 40
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.33 E-value=5.5e-07 Score=68.96 Aligned_cols=49 Identities=31% Similarity=0.748 Sum_probs=41.8
Q ss_pred CCCCCccccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
-+|.-.+.||.|..++++|+.|+ |+|.||.+||..-+-.+. ..||.|.+
T Consensus 269 ~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsD----f~CpnC~r 318 (427)
T COG5222 269 QPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSD----FKCPNCSR 318 (427)
T ss_pred CCCCccccCcchhhhhhCcccCccccchHHHHHHhhhhhhcc----ccCCCccc
Confidence 34455589999999999999997 999999999998777654 58999987
No 41
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.32 E-value=3.7e-07 Score=53.87 Aligned_cols=47 Identities=26% Similarity=0.507 Sum_probs=31.7
Q ss_pred CCCCCccccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCC
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPL 51 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~ 51 (142)
++-..++.|||....+.+||.. .|||+|..+.|.+|++. .+...||+
T Consensus 6 ~~~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~---~~~~~CPv 53 (57)
T PF11789_consen 6 EGGTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR---NGSKRCPV 53 (57)
T ss_dssp -SSB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT---TS-EE-SC
T ss_pred eccEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh---cCCCCCCC
Confidence 3445568999999999999996 69999999999999943 23468998
No 42
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.8e-07 Score=53.94 Aligned_cols=49 Identities=24% Similarity=0.533 Sum_probs=41.3
Q ss_pred ccccccccccccCceeecCCC-cccHhHHHHHHHhCCCCCCCCCCCCccccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSH-WFCGNCIMLVWDHGSTLQACRCPLCRRRITLL 59 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH-~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l 59 (142)
+.+|.||++...+.|.-.||| -.|..|-.+.|+... -.||.||+++..+
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~----g~CPiCRapi~dv 56 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALH----GCCPICRAPIKDV 56 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccC----CcCcchhhHHHHH
Confidence 378999999999999999999 579999999888543 3899999987643
No 43
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.7e-06 Score=67.53 Aligned_cols=52 Identities=25% Similarity=0.660 Sum_probs=43.1
Q ss_pred CCccccccccccccCceeecCCC-cccHhHHHHHHHhCCCCCCCCCCCCccccccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSH-WFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIP 61 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH-~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~ 61 (142)
++..+|.||++..++-+.+||.| -.|..|.....-+++ .||+||+++..+..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n-----~CPICRqpi~~ll~ 340 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTN-----NCPICRQPIEELLE 340 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhc-----CCCccccchHhhhe
Confidence 44689999999999999999999 579999988654444 89999999885443
No 44
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.12 E-value=1.2e-06 Score=70.39 Aligned_cols=49 Identities=29% Similarity=0.831 Sum_probs=43.1
Q ss_pred CCCccccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++++..|++|...+.+|+.+ .|||.||..|+..|..... .||.|+....
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~-----~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQ-----KCPVCRQELT 67 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCc-----CCcccccccc
Confidence 36679999999999999995 8999999999999988743 8999987765
No 45
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=6.8e-07 Score=68.14 Aligned_cols=46 Identities=26% Similarity=0.780 Sum_probs=41.1
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+.|-||...+..||.++|+|.||..|..+-++.+. .|++|.+++..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-----~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-----KCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCC-----cceeccccccc
Confidence 57999999999999999999999999988887765 89999987543
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.06 E-value=1.4e-06 Score=69.82 Aligned_cols=44 Identities=32% Similarity=0.746 Sum_probs=36.4
Q ss_pred CccccccccccccCce----eecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 6 CGDVCSVCHGNFNVPC----QANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv----~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
+--+||+|++.+..-+ ++.|.|+|..+|+.+||.. +||+||...
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~-------scpvcR~~q 221 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS-------SCPVCRYCQ 221 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC-------cChhhhhhc
Confidence 3459999999997654 4569999999999999876 799999643
No 47
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=4.5e-06 Score=63.13 Aligned_cols=51 Identities=25% Similarity=0.628 Sum_probs=41.8
Q ss_pred CCccccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
.++.+||+|.+..+.|.+.. |||.||.-||.+-...+. -..||.|..+...
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a---sf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA---SFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh---hcccCccCCCCcc
Confidence 45689999999999999876 999999999988765432 2589999887553
No 48
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.93 E-value=2.9e-06 Score=52.14 Aligned_cols=51 Identities=20% Similarity=0.358 Sum_probs=24.8
Q ss_pred cccccccccccc-C---cee--e--cCCCcccHhHHHHHHHhCCCCC----C--CCCCCCccccc
Q 032386 7 GDVCSVCHGNFN-V---PCQ--A--NCSHWFCGNCIMLVWDHGSTLQ----A--CRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~-~---pv~--~--~CgH~fC~~Ci~~~~~~~~~~~----~--~~CP~Cr~~~~ 57 (142)
+..|+||+.... . |.. . .|++.|...|+.+|+.....++ . -.||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 578999999754 2 322 2 5999999999999998643211 1 16999998865
No 49
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=7.5e-06 Score=64.10 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=44.1
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
.+|..||||..-...+|.+||+|.-|..||.+.+-+.+ .|..|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k-----~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCK-----RCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCC-----eeeEecceeee
Confidence 56789999999999999999999999999999988875 89999988663
No 50
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.4e-05 Score=60.53 Aligned_cols=50 Identities=28% Similarity=0.639 Sum_probs=38.8
Q ss_pred CCccccccccccccC----------ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNV----------PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~----------pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.++..|.||-+.+.. -..++|+|+|...||+.|-.-++ ..+||.|++.++
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK---kqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK---KQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC---CCCCchHHHHhh
Confidence 456789999886643 34678999999999999966543 248999998755
No 51
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.46 E-value=0.00017 Score=41.14 Aligned_cols=42 Identities=19% Similarity=0.668 Sum_probs=33.3
Q ss_pred ccccccc--cccCceeecCC-----CcccHhHHHHHHHhCCCCCCCCCCCCc
Q 032386 9 VCSVCHG--NFNVPCQANCS-----HWFCGNCIMLVWDHGSTLQACRCPLCR 53 (142)
Q Consensus 9 ~CpIC~~--~~~~pv~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~CP~Cr 53 (142)
.|-||++ .-.++...||. |.+..+|+.+|+..+. ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~---~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG---NKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC---CCcCCCCC
Confidence 4889997 44567788885 7899999999998764 34899995
No 52
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.45 E-value=5.2e-05 Score=65.92 Aligned_cols=48 Identities=29% Similarity=0.796 Sum_probs=37.7
Q ss_pred cccccccccccc-----Ccee--ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFN-----VPCQ--ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..+|+||+.++. -|.. ..|.|.|...|+.+|++.++ .-+||.||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~---~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA---RSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC---CCCCCccccccc
Confidence 368999999775 2333 35999999999999999864 458999997654
No 53
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=6.5e-05 Score=61.15 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=37.5
Q ss_pred CCcccccccccccc-----------------CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFN-----------------VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~-----------------~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+...|+||+.... +=+.|||.|.|...|+.+|.+.-+ ..||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk----l~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK----LICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc----ccCCccCCCCC
Confidence 44578999997652 124469999999999999998432 47999998753
No 54
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00014 Score=58.04 Aligned_cols=50 Identities=28% Similarity=0.777 Sum_probs=39.3
Q ss_pred CCccccccccccccCc-----eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVP-----CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~p-----v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
....+||||+|....| +.+.|||.|-.+||++|+-+ .....||.|...-.
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k---~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK---KTKMQCPLCSGKAT 56 (463)
T ss_pred CccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh---hhhhhCcccCChhH
Confidence 4568999999987765 33569999999999999953 34568999986543
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.27 E-value=0.00012 Score=58.24 Aligned_cols=47 Identities=28% Similarity=0.661 Sum_probs=38.1
Q ss_pred ccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
-|-||-+-=++-..-+|||..|..|+..|.... +..+||.||..+..
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd---~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD---EGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccC---CCCCCCceeeEecc
Confidence 589999887776777899999999999975443 23589999998873
No 56
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.22 E-value=0.00019 Score=57.84 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=34.5
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCC
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS 42 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~ 42 (142)
++++.||||-..+++|+.++|+|..|..|......+++
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~tp 39 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTP 39 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcccCC
Confidence 57899999999999999999999999999988776654
No 57
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.20 E-value=7.9e-05 Score=63.65 Aligned_cols=52 Identities=19% Similarity=0.435 Sum_probs=40.4
Q ss_pred ccccccccccccCcee---ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccccccCC
Q 032386 7 GDVCSVCHGNFNVPCQ---ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPND 63 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~---~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~~~ 63 (142)
...||+|+..+.+... .+|+|.||..|+..|-+... +||+||..+..+.+..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq-----TCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ-----TCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc-----cCchhhhhhheeeeec
Confidence 3578888887765433 46999999999999988876 9999999988554443
No 58
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00022 Score=56.62 Aligned_cols=49 Identities=18% Similarity=0.539 Sum_probs=36.3
Q ss_pred ccccccccccccCce---ee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPC---QA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv---~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...|.||.+.+..-. .+ .|||+|...|+.+|+...++. ..||.|+-.+.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~--R~cpic~ik~~ 56 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSN--RGCPICQIKLQ 56 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCcc--CCCCceeeccc
Confidence 357999966554321 23 399999999999999988753 48999994443
No 59
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00012 Score=45.20 Aligned_cols=47 Identities=28% Similarity=0.726 Sum_probs=34.4
Q ss_pred ccccccccccC------------ceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 9 VCSVCHGNFNV------------PCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 9 ~CpIC~~~~~~------------pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.|.||.-.|.- |.... |.|.|..-||.+|+..... .-.||+||+...
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~ts--q~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTS--QGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccc--cccCCcchheeE
Confidence 77887766531 34443 9999999999999876542 248999998754
No 60
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.12 E-value=0.00052 Score=42.72 Aligned_cols=29 Identities=34% Similarity=0.635 Sum_probs=25.7
Q ss_pred cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 24 NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 24 ~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.|.|.|..-||.+|+.... .||++|+...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~-----~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKG-----VCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhCC-----CCCCCCceeE
Confidence 4999999999999998865 8999999754
No 61
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00025 Score=55.66 Aligned_cols=46 Identities=33% Similarity=0.749 Sum_probs=35.9
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLL 59 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l 59 (142)
...-|.||.+-..+.+.++|||.-| |..-.-.- ..||+||+.+...
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l------~~CPvCR~rI~~~ 349 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL------PQCPVCRQRIRLV 349 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhhC------CCCchhHHHHHHH
Confidence 3467999999999999999999877 66543222 3799999987653
No 62
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0001 Score=56.42 Aligned_cols=42 Identities=26% Similarity=0.694 Sum_probs=35.3
Q ss_pred ccccccccccccCceeecCCC-cccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSH-WFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH-~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.-|.||+|...+.+.++||| .-|.+|-.+. . .||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-~--------eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-N--------ECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-c--------cCchHHHHHH
Confidence 467999999999999999999 6788887653 1 6999998754
No 63
>PHA03096 p28-like protein; Provisional
Probab=96.97 E-value=0.00074 Score=52.10 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=32.0
Q ss_pred ccccccccccc--------CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 8 DVCSVCHGNFN--------VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 8 ~~CpIC~~~~~--------~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
..|.||++... ..+..+|.|.||..|+..|...+.. ...||.|+.-.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~--~e~~~~c~~~~ 233 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLY--KETEPENRRLN 233 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhh--cccCccccchh
Confidence 57999999543 2344579999999999998766532 23455555433
No 64
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.96 E-value=0.00031 Score=60.01 Aligned_cols=46 Identities=26% Similarity=0.720 Sum_probs=40.7
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|+||.+ ...++.+.|||.||.+|+...++... ...||.||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~---~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE---NAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccccc---CCCCcHHHHHHH
Confidence 78999999 88899999999999999999998764 238999998876
No 65
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=96.93 E-value=0.00074 Score=46.10 Aligned_cols=50 Identities=18% Similarity=0.492 Sum_probs=42.6
Q ss_pred ccccccccccccCceeec----CCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 7 GDVCSVCHGNFNVPCQAN----CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~----CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
-.+|-||.|...+...+. ||-..|..|....|+... -.+.||.|+.++..
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~--~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN--LYPVCPVCKTSFKS 133 (140)
T ss_pred ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc--cCCCCCcccccccc
Confidence 369999999998887764 999999999999999874 45699999988653
No 66
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00078 Score=52.42 Aligned_cols=47 Identities=28% Similarity=0.532 Sum_probs=39.6
Q ss_pred CCCccccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
|++...||+|...-.+|..+. -|-.||..|+.+|..+.+ .||+=..+
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~-----~CPVT~~p 344 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG-----HCPVTGYP 344 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC-----CCCccCCc
Confidence 466789999999888887765 699999999999999765 89987655
No 67
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0013 Score=49.20 Aligned_cols=100 Identities=19% Similarity=0.466 Sum_probs=57.4
Q ss_pred ccccccccccc-cCc-ee--e-c-CCCcccHhHHHHHHHhCCCCCCCCCC--CCcccccccccCCcccccCCCchHhhHH
Q 032386 7 GDVCSVCHGNF-NVP-CQ--A-N-CSHWFCGNCIMLVWDHGSTLQACRCP--LCRRRITLLIPNDDSLRQRHDPAVGDIL 78 (142)
Q Consensus 7 ~~~CpIC~~~~-~~p-v~--~-~-CgH~fC~~Ci~~~~~~~~~~~~~~CP--~Cr~~~~~l~~~~~~~~~~~~~~~~~~~ 78 (142)
+..||+|...- -+| +. + | |-|..|.+|+-+.+..++ ..|| -|.+.+....-..+.+++..-..-.++.
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp----AqCP~~gC~kILRK~kf~~qtFeD~~vEkEvdvR 85 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP----AQCPYKGCGKILRKIKFIKQTFEDITVEKEVDVR 85 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC----CCCCCccHHHHHHHhcccccccchhhhhhhhhHH
Confidence 45899999743 233 22 2 3 999999999999888765 5899 8887665322222212211111111122
Q ss_pred HHH-HHHH---HhhCCCCCCcchhhhhhchhHHHHHHH
Q 032386 79 QKV-ESYN---RIFGGPTTANGLFQRIQDLPFLLRRLV 112 (142)
Q Consensus 79 ~~i-~~~n---~~~~~~~~~~~~~~~l~d~p~l~~~~~ 112 (142)
..+ +-+| ..|+|.. ....++|..+-.++-.++
T Consensus 86 kr~~r~Fnk~~~eF~gdl--~~YNdYLEevE~l~f~l~ 121 (314)
T COG5220 86 KRLLRAFNKEEEEFGGDL--AKYNDYLEEVEELVFELL 121 (314)
T ss_pred HHHHHHhccchhhhCccH--HHHHHHHHHHHHHHHHHH
Confidence 222 2333 3466666 777777777666654443
No 68
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0023 Score=51.26 Aligned_cols=49 Identities=20% Similarity=0.364 Sum_probs=36.0
Q ss_pred cccccccccccc--C-ceeecCCCcccHhHHHHHHHhCC---CCCCCCCCCCccc
Q 032386 7 GDVCSVCHGNFN--V-PCQANCSHWFCGNCIMLVWDHGS---TLQACRCPLCRRR 55 (142)
Q Consensus 7 ~~~CpIC~~~~~--~-pv~~~CgH~fC~~Ci~~~~~~~~---~~~~~~CP~Cr~~ 55 (142)
.+.|.||++... . -+.++|+|.||.+|...|..... .....+||.+...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 368999999653 2 35589999999999999977432 2345678877654
No 69
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0018 Score=49.62 Aligned_cols=45 Identities=24% Similarity=0.798 Sum_probs=33.8
Q ss_pred cccccccc-ccCce-e---ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 9 VCSVCHGN-FNVPC-Q---ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 9 ~CpIC~~~-~~~pv-~---~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.||+|... ..+|- . -+|+|..|.+|+-..+..++ ..||.|...+.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~----~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP----AQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC----CCCCcccchhh
Confidence 59999874 33331 1 26999999999999888765 48999987654
No 70
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.71 E-value=0.0026 Score=44.72 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=39.9
Q ss_pred CccccccccccccCceeecCC------------Ccc-cHhHHHHHHHhCCC--------------------------CCC
Q 032386 6 CGDVCSVCHGNFNVPCQANCS------------HWF-CGNCIMLVWDHGST--------------------------LQA 46 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~Cg------------H~f-C~~Ci~~~~~~~~~--------------------------~~~ 46 (142)
++.+||||++...++|.+-|. .+| ...|+.++-+.... ...
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPE 80 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccc
Confidence 578999999999999998443 222 25788876553211 114
Q ss_pred CCCCCCcccccccccCC
Q 032386 47 CRCPLCRRRITLLIPND 63 (142)
Q Consensus 47 ~~CP~Cr~~~~~l~~~~ 63 (142)
..||+||..+..+....
T Consensus 81 L~CPLCRG~V~GWtvve 97 (162)
T PF07800_consen 81 LACPLCRGEVKGWTVVE 97 (162)
T ss_pred ccCccccCceeceEEch
Confidence 58999999988665544
No 71
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.48 E-value=0.0013 Score=38.11 Aligned_cols=45 Identities=22% Similarity=0.481 Sum_probs=34.4
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
...|-.|...-...+.++|||.-|..|... .+.+ .||.|.++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~-~rYn------gCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG-ERYN------GCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh-hhcc------CCCCCCCcccC
Confidence 345666777777888999999999999855 3332 79999998653
No 72
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=96.44 E-value=0.001 Score=38.05 Aligned_cols=47 Identities=17% Similarity=0.544 Sum_probs=23.1
Q ss_pred cccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 8 DVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
+.|||....+..|+... |.|.-|.+= ..|+......+...||.|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 68999999999999965 999877642 233332222334789999863
No 73
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0023 Score=49.41 Aligned_cols=45 Identities=27% Similarity=0.829 Sum_probs=37.3
Q ss_pred ccccccccccc------CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 8 DVCSVCHGNFN------VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 8 ~~CpIC~~~~~------~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
..|-||-+.+. .|..+.|||++|..|+.....+.. ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~----i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSR----ILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCce----eeccCCCCcc
Confidence 57999998764 477788999999999999887764 4789999874
No 74
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=96.29 E-value=0.003 Score=35.75 Aligned_cols=42 Identities=24% Similarity=0.646 Sum_probs=20.5
Q ss_pred ccccccccc--Cceee--cCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 10 CSVCHGNFN--VPCQA--NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 10 CpIC~~~~~--~pv~~--~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
||+|.+.+. +--.. +||+..|..|.....+... -.||-||++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~----g~CPgCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEG----GRCPGCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-----SB-TTT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccC----CCCCCCCCC
Confidence 788988763 22333 4999999999988765322 389999986
No 75
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.13 E-value=0.014 Score=44.51 Aligned_cols=53 Identities=23% Similarity=0.457 Sum_probs=38.9
Q ss_pred CCccccccccccccC---cee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc--ccccCC
Q 032386 5 PCGDVCSVCHGNFNV---PCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT--LLIPND 63 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~---pv~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~--~l~~~~ 63 (142)
...+.|||....|.. -+. -+|||+|+..++.+. ..+ ..||+|.+++. .+++.+
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~-----~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKS-----KKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-ccc-----ccccccCCccccCCEEEec
Confidence 455899999988853 233 479999999999996 322 27999999988 444443
No 76
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.0053 Score=46.23 Aligned_cols=48 Identities=10% Similarity=0.218 Sum_probs=39.5
Q ss_pred CCccccccccccccCc----eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVP----CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...+.||+|.+.+++. +.-+|||.+|.+|+++.++... .||+|..++.
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-----v~pv~d~plk 270 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-----VDPVTDKPLK 270 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-----cccCCCCcCc
Confidence 3557899999999863 3347999999999999887754 8999998876
No 77
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.98 E-value=0.0016 Score=48.73 Aligned_cols=45 Identities=29% Similarity=0.734 Sum_probs=30.1
Q ss_pred ccccccccccc-Cc-eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccccc
Q 032386 8 DVCSVCHGNFN-VP-CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLL 59 (142)
Q Consensus 8 ~~CpIC~~~~~-~p-v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l 59 (142)
..|-.|...-. +| ..|.|+|+||..|.... . +..||.|++++..+
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~-----~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--S-----PDVCPLCKKSIRII 50 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC--C-----ccccccccceeeee
Confidence 35666665332 33 33679999999998542 1 12899999997743
No 78
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0059 Score=39.89 Aligned_cols=27 Identities=30% Similarity=0.547 Sum_probs=24.3
Q ss_pred cCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 24 NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 24 ~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.|.|.|..-||.+|+++.. .||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~-----vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN-----VCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcC-----cCCCcCcc
Confidence 5999999999999999876 89999875
No 79
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.75 E-value=0.011 Score=47.08 Aligned_cols=34 Identities=24% Similarity=0.739 Sum_probs=26.1
Q ss_pred CCCcccHhHHHHHHHhCCC--------CCCCCCCCCcccccc
Q 032386 25 CSHWFCGNCIMLVWDHGST--------LQACRCPLCRRRITL 58 (142)
Q Consensus 25 CgH~fC~~Ci~~~~~~~~~--------~~~~~CP~Cr~~~~~ 58 (142)
|....|.+|+-+|+....+ ++...||+||+.+-.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 4556689999999987542 456799999998753
No 80
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.68 E-value=0.007 Score=47.74 Aligned_cols=50 Identities=24% Similarity=0.568 Sum_probs=39.5
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+++..|.||-+-++....+||+|..|.-|..+.-.-= -...||.||..-.
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY---~~K~C~~CrTE~e 108 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALY---MQKGCPLCRTETE 108 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHH---hccCCCccccccc
Confidence 5567899999999999999999999999986642210 1138999998765
No 81
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.49 E-value=0.021 Score=40.25 Aligned_cols=53 Identities=15% Similarity=0.466 Sum_probs=38.7
Q ss_pred CCCCC-CccccccccccccCceeecCC--C---cccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 1 MEGPP-CGDVCSVCHGNFNVPCQANCS--H---WFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 1 ~~~~~-~~~~CpIC~~~~~~pv~~~Cg--H---~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
||++. .+..|-||.+.-. +-.-||. . .-..+|+++|...+ +...|+.|+.+..
T Consensus 1 ~~~~s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s---~~~~CeiC~~~Y~ 59 (162)
T PHA02825 1 MEDVSLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTS---KNKSCKICNGPYN 59 (162)
T ss_pred CCCcCCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcC---CCCcccccCCeEE
Confidence 56654 4579999998754 3334644 4 33899999999875 4579999999877
No 82
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.32 E-value=0.008 Score=48.07 Aligned_cols=48 Identities=23% Similarity=0.518 Sum_probs=35.9
Q ss_pred cccccccccccc-Cc---eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFN-VP---CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~-~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++-|..|-+.+- .| -.+||.|+|...|+.+++.+ .+..+||.||+-.+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~---n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILEN---NGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHh---CCCCCCccHHHHHh
Confidence 467888888653 22 23789999999999999876 34579999995444
No 83
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.016 Score=46.31 Aligned_cols=46 Identities=24% Similarity=0.486 Sum_probs=36.4
Q ss_pred cccccccccccc---CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 7 GDVCSVCHGNFN---VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 7 ~~~CpIC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
-+.|||=.+.-. .|+.+.|||+-+.+-+.+.-+++. ...+||.|-.
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~--~sfKCPYCP~ 382 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS--QSFKCPYCPV 382 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC--eeeeCCCCCc
Confidence 368999877554 489999999999999999776653 2478999954
No 84
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.06 Score=40.20 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=38.7
Q ss_pred Ccccccccccccc--CceeecCCCcccHhHHHHHHHhCCC---CCCCCCCCCcccc
Q 032386 6 CGDVCSVCHGNFN--VPCQANCSHWFCGNCIMLVWDHGST---LQACRCPLCRRRI 56 (142)
Q Consensus 6 ~~~~CpIC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~~~---~~~~~CP~Cr~~~ 56 (142)
-+--|..|...+. +.+.+.|-|.|...|+.+|-.+-+. .....||.|.+.+
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 3457889988775 5677889999999999998776432 2345899998764
No 85
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.015 Score=44.67 Aligned_cols=47 Identities=23% Similarity=0.490 Sum_probs=37.5
Q ss_pred CCccccccccccccCceeecC----CCcccHhHHHHHHHhCCCCCCCCCCC
Q 032386 5 PCGDVCSVCHGNFNVPCQANC----SHWFCGNCIMLVWDHGSTLQACRCPL 51 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~C----gH~fC~~Ci~~~~~~~~~~~~~~CP~ 51 (142)
...+.|.+|.+.+.+-....| .|.||..|-++.+++...++..-||.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 445899999999998777666 59999999999998876666565663
No 86
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.78 E-value=0.011 Score=53.48 Aligned_cols=47 Identities=30% Similarity=0.535 Sum_probs=40.2
Q ss_pred Ccccccccccccc-CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFN-VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+...|+||.+.+. ....+.|||.+|..|...|..++. .||.|+....
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s-----~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASS-----RCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhc-----cCcchhhhhh
Confidence 3458999999998 677889999999999999998875 8999985544
No 87
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=94.64 E-value=0.032 Score=51.53 Aligned_cols=54 Identities=26% Similarity=0.617 Sum_probs=40.8
Q ss_pred CCcccccccccc-c--cCceeecCCCcccHhHHHHHHHhCCC-----CCCCCCCCCcccccc
Q 032386 5 PCGDVCSVCHGN-F--NVPCQANCSHWFCGNCIMLVWDHGST-----LQACRCPLCRRRITL 58 (142)
Q Consensus 5 ~~~~~CpIC~~~-~--~~pv~~~CgH~fC~~Ci~~~~~~~~~-----~~~~~CP~Cr~~~~~ 58 (142)
+.|.-|.||+.- + ...+.+.|+|.|...|..+.+++.-- .+-++||.|+.+++.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 446789999973 3 24577999999999999988776431 334589999998774
No 88
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=94.59 E-value=0.0075 Score=51.39 Aligned_cols=49 Identities=22% Similarity=0.579 Sum_probs=41.7
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..+||||......|+.+.|-|.||..|+...+...+ +...||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~--~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKK--GPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccC--ccccchhhhhhhh
Confidence 478999999999999999999999999988777654 2568999997655
No 89
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.40 E-value=0.027 Score=43.87 Aligned_cols=43 Identities=30% Similarity=0.630 Sum_probs=34.6
Q ss_pred ccccccccccccCcee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
-+.||||.+.+..|+. =+=||.-|.+|-.+.. + .||.||.++.
T Consensus 48 lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~-~-------~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS-N-------KCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCcccceecCCCcEehhhhhhhhc-c-------cCCccccccc
Confidence 3799999999998865 3468999999987532 2 7999998876
No 90
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.018 Score=48.77 Aligned_cols=38 Identities=32% Similarity=0.971 Sum_probs=30.8
Q ss_pred ccccccccccc----CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCc
Q 032386 8 DVCSVCHGNFN----VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53 (142)
Q Consensus 8 ~~CpIC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr 53 (142)
+.|+||...|. .|+.+-|||+.|+.|+...-+. +|| |+
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~-------scp-~~ 53 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA-------SCP-TK 53 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc-------cCC-CC
Confidence 57999987663 6899999999999999886544 788 44
No 91
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.83 E-value=0.03 Score=38.44 Aligned_cols=35 Identities=17% Similarity=0.465 Sum_probs=26.6
Q ss_pred CccccccccccccC--cee-ecCC------CcccHhHHHHHHHh
Q 032386 6 CGDVCSVCHGNFNV--PCQ-ANCS------HWFCGNCIMLVWDH 40 (142)
Q Consensus 6 ~~~~CpIC~~~~~~--pv~-~~Cg------H~fC~~Ci~~~~~~ 40 (142)
...+|.||++.+.+ .++ ++|| |.||.+|+.+|-+.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 36799999998766 544 4555 78999999998433
No 92
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=0.031 Score=48.69 Aligned_cols=42 Identities=29% Similarity=0.735 Sum_probs=34.3
Q ss_pred CccccccccccccCcee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 6 CGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
+.-.|..|-..+..|++ -.|||+|...|+. +.. ..||.|+..
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~-----~~CP~C~~e 881 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKE-----DKCPKCLPE 881 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---cCc-----ccCCccchh
Confidence 34589999999999866 6799999999998 222 389999873
No 93
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=93.75 E-value=0.071 Score=29.38 Aligned_cols=40 Identities=23% Similarity=0.646 Sum_probs=24.0
Q ss_pred cccccccccCceee---cCCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 10 CSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 10 CpIC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
|.+|.++....+.= .|+-.+...|+..||+..+. ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~---~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSN---PKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS----B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCC---CCCcCC
Confidence 67899988877663 39989999999999987642 269987
No 94
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.06 Score=44.11 Aligned_cols=38 Identities=18% Similarity=0.395 Sum_probs=32.0
Q ss_pred CCccccccccccccC-ceeecCCCcccHhHHHHHHHhCC
Q 032386 5 PCGDVCSVCHGNFNV-PCQANCSHWFCGNCIMLVWDHGS 42 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~ 42 (142)
....+|.||.+.... ...+.|||.||..|+..|+..+-
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI 106 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKI 106 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhhee
Confidence 345799999998875 66678999999999999988754
No 95
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.029 Score=43.66 Aligned_cols=42 Identities=29% Similarity=0.567 Sum_probs=28.6
Q ss_pred ccccccc-cccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 9 VCSVCHG-NFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 9 ~CpIC~~-~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.|.-|-- +......++|.|.||.+|...- . .+.||.|-..+.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~-----dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSD--S-----DKICPLCDDRVQ 134 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcC--c-----cccCcCcccHHH
Confidence 4555544 3334556799999999998542 1 138999987765
No 96
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.074 Score=42.88 Aligned_cols=44 Identities=23% Similarity=0.568 Sum_probs=30.5
Q ss_pred ccccccccc-cccC---ceeecCCCcccHhHHHHHHHhCCC-CCCCCCC
Q 032386 7 GDVCSVCHG-NFNV---PCQANCSHWFCGNCIMLVWDHGST-LQACRCP 50 (142)
Q Consensus 7 ~~~CpIC~~-~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~-~~~~~CP 50 (142)
..+|.||.+ .... .....|+|.||..|..+++..+.. ...+.||
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~ 194 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCP 194 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCC
Confidence 468999994 3322 124569999999999999885421 3345676
No 97
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=0.09 Score=39.76 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=31.1
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhC
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHG 41 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~ 41 (142)
..|..|+..+.+||.++=||.||.+||.+++-..
T Consensus 44 dcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 44 DCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred ceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 5789999999999999999999999999997654
No 98
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.76 E-value=0.071 Score=46.53 Aligned_cols=50 Identities=26% Similarity=0.517 Sum_probs=37.5
Q ss_pred CccccccccccccC--cee--ecCCCcccHhHHHHHHHhCCC--CCCCCCCCCccc
Q 032386 6 CGDVCSVCHGNFNV--PCQ--ANCSHWFCGNCIMLVWDHGST--LQACRCPLCRRR 55 (142)
Q Consensus 6 ~~~~CpIC~~~~~~--pv~--~~CgH~fC~~Ci~~~~~~~~~--~~~~~CP~Cr~~ 55 (142)
+..+|.||.+.+.. |+- .+|-|+|...||.+|-++..+ .+.+.||.|+..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 34799999998763 332 358899999999999876432 246799999843
No 99
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=0.13 Score=37.05 Aligned_cols=53 Identities=21% Similarity=0.312 Sum_probs=34.9
Q ss_pred Ccccccccccccc-----Ccee--ecCCCcccHhHHHHHHHhCCCCC----C--CCCCCCcccccc
Q 032386 6 CGDVCSVCHGNFN-----VPCQ--ANCSHWFCGNCIMLVWDHGSTLQ----A--CRCPLCRRRITL 58 (142)
Q Consensus 6 ~~~~CpIC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~~----~--~~CP~Cr~~~~~ 58 (142)
+..-|.||+.+-- +.+. ..||..|..-|+..|++.-..++ . -.||.|..++..
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 3357888876432 2222 35999999999999988522111 0 179999988764
No 100
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=92.33 E-value=0.0048 Score=37.62 Aligned_cols=46 Identities=20% Similarity=0.540 Sum_probs=27.4
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccccccC
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~~ 62 (142)
+..||.|...+.-- + +|.+|..|-..+...+ .||.|.+++..|..-
T Consensus 1 e~~CP~C~~~L~~~---~-~~~~C~~C~~~~~~~a------~CPdC~~~Le~LkAC 46 (70)
T PF07191_consen 1 ENTCPKCQQELEWQ---G-GHYHCEACQKDYKKEA------FCPDCGQPLEVLKAC 46 (70)
T ss_dssp --B-SSS-SBEEEE---T-TEEEETTT--EEEEEE------E-TTT-SB-EEEEET
T ss_pred CCcCCCCCCccEEe---C-CEEECccccccceecc------cCCCcccHHHHHHHh
Confidence 46899999876531 1 8999999998765554 799999998866544
No 101
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=91.10 E-value=0.3 Score=38.00 Aligned_cols=53 Identities=25% Similarity=0.574 Sum_probs=37.4
Q ss_pred CCcccccccccccc-Cc--eeecCCCcccHhHHHHHHHh------------------CCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFN-VP--CQANCSHWFCGNCIMLVWDH------------------GSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~-~p--v~~~CgH~fC~~Ci~~~~~~------------------~~~~~~~~CP~Cr~~~~ 57 (142)
.....|.||+--|. .| ..|.|-|-|...|+.+|+.. ....-...||+||..+.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 34578999998664 34 45789999999999888653 11111125999999886
No 102
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.16 Score=39.44 Aligned_cols=34 Identities=21% Similarity=0.759 Sum_probs=25.2
Q ss_pred CCCcccHhHHHHHHHhCCC--------CCCCCCCCCcccccc
Q 032386 25 CSHWFCGNCIMLVWDHGST--------LQACRCPLCRRRITL 58 (142)
Q Consensus 25 CgH~fC~~Ci~~~~~~~~~--------~~~~~CP~Cr~~~~~ 58 (142)
|....|.+|+.+|+....+ .+...||+||+.+..
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 6677889999998765432 234699999998763
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.92 E-value=0.16 Score=40.12 Aligned_cols=47 Identities=26% Similarity=0.578 Sum_probs=32.3
Q ss_pred cccccccccccc--Cceee--cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFN--VPCQA--NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~--~pv~~--~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.-||.|.+.+. +--.. +||-..|.-|....-+.-. -.||-||+.-+
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~ln----grcpacrr~y~ 64 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLN----GRCPACRRKYD 64 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhcc----CCChHhhhhcc
Confidence 345999999654 33333 5888889999877544332 28999998654
No 104
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.093 Score=38.79 Aligned_cols=39 Identities=31% Similarity=0.661 Sum_probs=30.9
Q ss_pred cccccccccCceeecCCC-cccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 10 CSVCHGNFNVPCQANCSH-WFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 10 CpIC~~~~~~pv~~~CgH-~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
|-.|.+.-..-+.+||.| .+|..|-.. . ..||.|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-~--------~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-L--------RICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-C--------ccCCCCcChhh
Confidence 888888777777789998 889999855 1 27999997644
No 105
>PHA02862 5L protein; Provisional
Probab=90.32 E-value=0.31 Score=33.92 Aligned_cols=47 Identities=19% Similarity=0.524 Sum_probs=34.4
Q ss_pred ccccccccccccCceeecCC-----CcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCS-----HWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+..|=||.+.-.+. .-||. .+-..+|+.+|+..+ +...|+.|+.+..
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S---~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYS---KKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcC---CCcCccCCCCeEE
Confidence 35789999976544 34554 245789999999764 4579999998765
No 106
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.31 E-value=0.17 Score=38.95 Aligned_cols=42 Identities=21% Similarity=0.636 Sum_probs=33.3
Q ss_pred ccccccccccc----CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 8 DVCSVCHGNFN----VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 8 ~~CpIC~~~~~----~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
.-||||.+.+. .|..++|||..-..|.+.....+ .+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-----y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-----YTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-----CCCCcccc
Confidence 34999998653 56678899999998888876543 69999988
No 107
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.17 E-value=0.12 Score=29.07 Aligned_cols=32 Identities=34% Similarity=0.994 Sum_probs=22.6
Q ss_pred eeecCC-CcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 21 CQANCS-HWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 21 v~~~Cg-H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
-.+.|. |-.|..|+...+..+. .||.|..++.
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~-----~C~iC~~~LP 46 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSD-----RCPICGKPLP 46 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSS-----EETTTTEE--
T ss_pred CeeeecchhHHHHHHHHHhcccc-----CCCcccCcCc
Confidence 455677 8899999999887765 8999998754
No 108
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.75 E-value=0.2 Score=38.12 Aligned_cols=61 Identities=21% Similarity=0.505 Sum_probs=43.5
Q ss_pred CCCccccccccccccCceee----cCC-----CcccHhHHHHHHHhCCC---CCCCCCCCCcccccccccCCc
Q 032386 4 PPCGDVCSVCHGNFNVPCQA----NCS-----HWFCGNCIMLVWDHGST---LQACRCPLCRRRITLLIPNDD 64 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~----~Cg-----H~fC~~Ci~~~~~~~~~---~~~~~CP~Cr~~~~~l~~~~~ 64 (142)
-+.+..|=||+..=++-... ||. ||-..+|+.+|++++.. .....||.|+..-....|.-.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l~ 89 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQLG 89 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeeccccC
Confidence 45667899999865543222 442 78899999999998754 445689999987666666543
No 109
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=86.82 E-value=0.57 Score=26.20 Aligned_cols=40 Identities=18% Similarity=0.567 Sum_probs=24.4
Q ss_pred ccccccccc--CceeecCCC-----cccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 10 CSVCHGNFN--VPCQANCSH-----WFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 10 CpIC~~~~~--~pv~~~CgH-----~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
|-||++.-. .|...||+- .-..+|+.+|+..+. ...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~---~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG---NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT----SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC---CCcCCCC
Confidence 668888644 256777653 347899999998742 3468877
No 110
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.72 E-value=0.61 Score=36.63 Aligned_cols=45 Identities=20% Similarity=0.527 Sum_probs=35.3
Q ss_pred ccccccccccc---CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 8 DVCSVCHGNFN---VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 8 ~~CpIC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
+.||+=.+..+ .|+.+.|||+.-.+-+.+.-+++. ...+||.|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~--~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV--LSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc--EEeeCCCCCc
Confidence 67888777654 489999999999999988666553 3578999954
No 111
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=82.76 E-value=2 Score=38.01 Aligned_cols=51 Identities=16% Similarity=0.385 Sum_probs=38.7
Q ss_pred CCCccccccccc--cccCceeecCCCc-----ccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHG--NFNVPCQANCSHW-----FCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~--~~~~pv~~~CgH~-----fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+|+.+|-||.. .-.+|..-||..+ ...+|+.+|+..++ ..+|-.|+.++.
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~---~~kCdiChy~~~ 66 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSG---TKKCDICHYEYK 66 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCC---Ccceeeecceee
Confidence 467799999986 3456777777642 47899999998754 468999998755
No 112
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.21 E-value=1.2 Score=39.14 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=40.4
Q ss_pred CCCccccccccccccCc-------eeecCCCcccHhHHHHHHHhCCC-CCCCCCCCCcccccccccCC
Q 032386 4 PPCGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGST-LQACRCPLCRRRITLLIPND 63 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~-~~~~~CP~Cr~~~~~l~~~~ 63 (142)
+.+..+|++|.--+.+| ..-+|+|.+|..||..|.++-.. ..+..|+.|..-+..+..+.
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a 160 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA 160 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc
Confidence 44556777777655542 22349999999999998776432 22457899988877554443
No 113
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=78.26 E-value=1.1 Score=21.83 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=5.1
Q ss_pred ccccccccc
Q 032386 9 VCSVCHGNF 17 (142)
Q Consensus 9 ~CpIC~~~~ 17 (142)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 466666544
No 114
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=76.65 E-value=1.9 Score=25.11 Aligned_cols=41 Identities=24% Similarity=0.667 Sum_probs=27.3
Q ss_pred ccccccccccCce--eecCC--CcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 9 VCSVCHGNFNVPC--QANCS--HWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 9 ~CpIC~~~~~~pv--~~~Cg--H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
.|-.|...+.... ..=|. .+||..|....+.. .||.|...+
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~-------~CPNCgGel 51 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG-------VCPNCGGEL 51 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC-------cCcCCCCcc
Confidence 4566666554322 22255 48999999997744 799998764
No 115
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=76.28 E-value=4 Score=23.20 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=9.8
Q ss_pred Ccccccccccccc
Q 032386 6 CGDVCSVCHGNFN 18 (142)
Q Consensus 6 ~~~~CpIC~~~~~ 18 (142)
+.+.||.|.+.+.
T Consensus 1 ~~f~CP~C~~~~~ 13 (54)
T PF05605_consen 1 DSFTCPYCGKGFS 13 (54)
T ss_pred CCcCCCCCCCccC
Confidence 4678999988554
No 116
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.00 E-value=1.9 Score=38.21 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=28.0
Q ss_pred CCccccccccccc-cCc-eeecCCCcccHhHHHHHHHh
Q 032386 5 PCGDVCSVCHGNF-NVP-CQANCSHWFCGNCIMLVWDH 40 (142)
Q Consensus 5 ~~~~~CpIC~~~~-~~p-v~~~CgH~fC~~Ci~~~~~~ 40 (142)
+.+.+|.+|...+ ..| +.-+|||.|..+|+.+....
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 4567899999854 344 55789999999999887654
No 117
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=75.86 E-value=1.6 Score=37.94 Aligned_cols=55 Identities=29% Similarity=0.529 Sum_probs=39.4
Q ss_pred CCCccccccccccccCc----------eeecCCCcc--------------------cHhHHHHHHHhCCC---CCCCCCC
Q 032386 4 PPCGDVCSVCHGNFNVP----------CQANCSHWF--------------------CGNCIMLVWDHGST---LQACRCP 50 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p----------v~~~CgH~f--------------------C~~Ci~~~~~~~~~---~~~~~CP 50 (142)
|+|-..|+-|+.-+.+| ..|+||..| |..|-.+|-+-... -++..||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 57778999999876554 447899888 99999988543210 2345899
Q ss_pred CCcccccc
Q 032386 51 LCRRRITL 58 (142)
Q Consensus 51 ~Cr~~~~~ 58 (142)
.|.-.+..
T Consensus 178 ~CGP~~~l 185 (750)
T COG0068 178 KCGPHLFL 185 (750)
T ss_pred ccCCCeEE
Confidence 99866554
No 118
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=75.26 E-value=0.94 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.610 Sum_probs=15.9
Q ss_pred CccccccccccccCcee----ecCCCcccHhHHHH
Q 032386 6 CGDVCSVCHGNFNVPCQ----ANCSHWFCGNCIML 36 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~----~~CgH~fC~~Ci~~ 36 (142)
+...|.+|...|..-.. -.||+.||.+|...
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 34789999998853211 35999999998854
No 119
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.17 E-value=4.2 Score=31.08 Aligned_cols=43 Identities=16% Similarity=0.420 Sum_probs=31.9
Q ss_pred ccccccc----ccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCH----GNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~----~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|||=- +..+....-.|||.|=..-+.+. ..+ .|++|.+...
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei-kas------~C~~C~a~y~ 158 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI-KAS------VCHVCGAAYQ 158 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh-hhc------cccccCCccc
Confidence 6788743 44556667789999999888774 322 8999998876
No 120
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.87 E-value=2.4 Score=26.07 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=20.1
Q ss_pred CCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 25 CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 25 CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
=-|+||..|.+..+.. .||.|...+.
T Consensus 27 fEcTFCadCae~~l~g-------~CPnCGGelv 52 (84)
T COG3813 27 FECTFCADCAENRLHG-------LCPNCGGELV 52 (84)
T ss_pred EeeehhHhHHHHhhcC-------cCCCCCchhh
Confidence 3489999999876543 7999987644
No 121
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.45 E-value=2.9 Score=36.67 Aligned_cols=39 Identities=26% Similarity=0.540 Sum_probs=27.7
Q ss_pred cccccccccccC--ceeecCCCcccHhHHHHHHHhCCCCCCCCCCC
Q 032386 8 DVCSVCHGNFNV--PCQANCSHWFCGNCIMLVWDHGSTLQACRCPL 51 (142)
Q Consensus 8 ~~CpIC~~~~~~--pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~ 51 (142)
+.|.||.=..+- -+...|+|....+|...||+.+. .||.
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-----~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-----VCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-----cCCC
Confidence 456666544332 23457999999999999999875 6773
No 122
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=68.89 E-value=6.4 Score=31.15 Aligned_cols=51 Identities=20% Similarity=0.514 Sum_probs=33.4
Q ss_pred Ccccccccccccc--------------C---c--eeecCCCcccHhHHHHHHHhCCC-----CCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFN--------------V---P--CQANCSHWFCGNCIMLVWDHGST-----LQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~--------------~---p--v~~~CgH~fC~~Ci~~~~~~~~~-----~~~~~CP~Cr~~~~ 57 (142)
.+.+||+|...-. + | ...|||| .|.+=-..||.+-+- .=...||.|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGH-v~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGH-VCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccc-ccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 3578999986421 1 1 2247999 677777788987542 11247999988755
No 123
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.20 E-value=0.56 Score=37.80 Aligned_cols=45 Identities=18% Similarity=0.380 Sum_probs=36.3
Q ss_pred cccccccccccC----ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNV----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+|.||...+.. -..+.|||.+-..|+++|+.... .||.|+..+.
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~-----kl~~~~rel~ 245 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKR-----KLPSCRRELP 245 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHH-----HhHHHHhhhh
Confidence 478898887653 34467999999999999998854 8999998765
No 125
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=67.99 E-value=3.7 Score=24.70 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=10.3
Q ss_pred cccHhHHHHHHHhC
Q 032386 28 WFCGNCIMLVWDHG 41 (142)
Q Consensus 28 ~fC~~Ci~~~~~~~ 41 (142)
.||+.|+.+|...+
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999998865
No 126
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=67.87 E-value=3 Score=26.75 Aligned_cols=36 Identities=25% Similarity=0.845 Sum_probs=26.8
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|-||...+..+ ||.||..|..+ .+ .|.+|.+.+.
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAYk---kG------iCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAYK---KG------ICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCccChhhhcc---cC------cccccCCeec
Confidence 4788887766553 88999999744 22 7999998763
No 127
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=67.11 E-value=3.1 Score=31.75 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=33.9
Q ss_pred ccccccccccccCcee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 7 GDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
+..|||=......|+. ..|||.|=..-|..+.... ....||+=...
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~---~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE---ITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC---ceeecccccCC
Confidence 4689987777777776 5699999999999977652 23578865443
No 128
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=65.48 E-value=5.1 Score=30.12 Aligned_cols=25 Identities=24% Similarity=0.705 Sum_probs=20.8
Q ss_pred ccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 29 FCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 29 fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
-|.+|-....++++ .||+|+.....
T Consensus 196 ~C~sC~qqIHRNAP-----iCPlCK~KsRS 220 (230)
T PF10146_consen 196 TCQSCHQQIHRNAP-----ICPLCKAKSRS 220 (230)
T ss_pred hhHhHHHHHhcCCC-----CCccccccccc
Confidence 49999999888886 89999986443
No 129
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.53 E-value=0.83 Score=31.51 Aligned_cols=21 Identities=33% Similarity=0.822 Sum_probs=15.6
Q ss_pred CCCCcccccccccc-ccCceeecCCC
Q 032386 3 GPPCGDVCSVCHGN-FNVPCQANCSH 27 (142)
Q Consensus 3 ~~~~~~~CpIC~~~-~~~pv~~~CgH 27 (142)
|-.++.+|.||... |.+. |||
T Consensus 61 Gv~ddatC~IC~KTKFADG----~GH 82 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFADG----CGH 82 (169)
T ss_pred ccCcCcchhhhhhcccccc----cCc
Confidence 45678999999984 5553 676
No 130
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=62.94 E-value=12 Score=23.31 Aligned_cols=48 Identities=23% Similarity=0.672 Sum_probs=20.2
Q ss_pred CccccccccccccC-----c--eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNV-----P--CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~-----p--v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
....|.||-+..-. + ..-.|+---|..|.+-=.+.+. ..||.|+.+..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~----q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGN----QVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-----SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCc----ccccccCCCcc
Confidence 34689999886531 1 1235888899999966555543 58999997755
No 131
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=62.21 E-value=4.6 Score=35.31 Aligned_cols=55 Identities=24% Similarity=0.481 Sum_probs=40.0
Q ss_pred CCCccccccccccccCc----------eeecCCCcc--------------------cHhHHHHHHHhCC---CCCCCCCC
Q 032386 4 PPCGDVCSVCHGNFNVP----------CQANCSHWF--------------------CGNCIMLVWDHGS---TLQACRCP 50 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p----------v~~~CgH~f--------------------C~~Ci~~~~~~~~---~~~~~~CP 50 (142)
|+|-..|+-|+..+.+| -.|+||..| |..|..+|-.... .-....||
T Consensus 65 ppD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~ 144 (711)
T TIGR00143 65 PADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACP 144 (711)
T ss_pred CCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCC
Confidence 56778999999877665 236788877 9999999854321 02345899
Q ss_pred CCcccccc
Q 032386 51 LCRRRITL 58 (142)
Q Consensus 51 ~Cr~~~~~ 58 (142)
.|.-.+..
T Consensus 145 ~Cgp~l~l 152 (711)
T TIGR00143 145 RCGPQLNF 152 (711)
T ss_pred CCCcEEEE
Confidence 99887754
No 132
>PLN02189 cellulose synthase
Probab=62.04 E-value=11 Score=34.25 Aligned_cols=46 Identities=22% Similarity=0.569 Sum_probs=31.9
Q ss_pred ccccccccccc-----Cc-ee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFN-----VP-CQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~-----~p-v~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|.||-|.+- ++ |. -.|+---|..|. +|=++. +...||.|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~e---g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERRE---GTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhc---CCccCcccCCchh
Confidence 48999999754 12 11 238888999999 443332 3458999998876
No 133
>PLN02436 cellulose synthase A
Probab=61.69 E-value=10 Score=34.65 Aligned_cols=46 Identities=22% Similarity=0.625 Sum_probs=31.8
Q ss_pred ccccccccccc-----Cc-eee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFN-----VP-CQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|.||-|..- ++ |.= .|+---|..|. ++-++. +...||.|++.-.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~e---g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERRE---GNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhc---CCccCcccCCchh
Confidence 48999999763 12 112 38888999999 443332 3458999998876
No 134
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=60.77 E-value=6.3 Score=22.27 Aligned_cols=31 Identities=26% Similarity=0.581 Sum_probs=21.8
Q ss_pred cccccccccccC----ceeecCCCcccHhHHHHHH
Q 032386 8 DVCSVCHGNFNV----PCQANCSHWFCGNCIMLVW 38 (142)
Q Consensus 8 ~~CpIC~~~~~~----pv~~~CgH~fC~~Ci~~~~ 38 (142)
..|.+|...|.. ..--.||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 468888776543 2224699999999996643
No 135
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.63 E-value=4.8 Score=32.54 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=25.4
Q ss_pred cccccccccccc-----CceeecCCCcccHhHHHHHHHhC
Q 032386 7 GDVCSVCHGNFN-----VPCQANCSHWFCGNCIMLVWDHG 41 (142)
Q Consensus 7 ~~~CpIC~~~~~-----~pv~~~CgH~fC~~Ci~~~~~~~ 41 (142)
-..||+|..... .-++=.|||-||..|...|....
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~ 345 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHN 345 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCC
Confidence 357999987654 23333499999999999876554
No 136
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=59.94 E-value=14 Score=21.37 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=23.7
Q ss_pred Cccccccccccc--cCcee--ecCCCcccHhHHHH
Q 032386 6 CGDVCSVCHGNF--NVPCQ--ANCSHWFCGNCIML 36 (142)
Q Consensus 6 ~~~~CpIC~~~~--~~pv~--~~CgH~fC~~Ci~~ 36 (142)
....|++|-+.| .+.++ ..||-.|.++|...
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 456899999998 44444 35999999999754
No 137
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=59.72 E-value=6.2 Score=31.19 Aligned_cols=45 Identities=24% Similarity=0.642 Sum_probs=32.6
Q ss_pred ccccccccccc--Cc--eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFN--VP--CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~--~p--v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
-+||||.+... +- +-.+||+..|..|......... .||.||++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~-----~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDG-----RCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCC-----CCCccCCccc
Confidence 58999999662 22 2246999889988877655543 8999996644
No 138
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.55 E-value=2.7 Score=32.30 Aligned_cols=44 Identities=23% Similarity=0.702 Sum_probs=33.7
Q ss_pred ccccccccccc------Cceeec--------CCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 8 DVCSVCHGNFN------VPCQAN--------CSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 8 ~~CpIC~~~~~------~pv~~~--------CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
..|.||..... .|.... |||..|..|+...+.+.. ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~----~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG----IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh----hcCCcccce
Confidence 45788876554 355556 999999999999877753 689999864
No 140
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=57.30 E-value=16 Score=23.95 Aligned_cols=30 Identities=27% Similarity=0.655 Sum_probs=21.1
Q ss_pred CCcccHhHHHHHHHhCC----CCCCCCCCCCccc
Q 032386 26 SHWFCGNCIMLVWDHGS----TLQACRCPLCRRR 55 (142)
Q Consensus 26 gH~fC~~Ci~~~~~~~~----~~~~~~CP~Cr~~ 55 (142)
.=.||..|+........ ..+...||.||..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 66799999977655421 2345789999874
No 141
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=54.62 E-value=7.4 Score=28.97 Aligned_cols=42 Identities=21% Similarity=0.549 Sum_probs=33.4
Q ss_pred cccccccccccCcee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 8 DVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
..|.+|..+.-..+. -+|+-.|...|+.++++..+ .||-|.-
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~-----~cphc~d 224 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRD-----ICPHCGD 224 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccC-----cCCchhc
Confidence 579999997665444 46888899999999998854 8999954
No 142
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=53.89 E-value=7 Score=26.83 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=13.0
Q ss_pred cccccccCceeecCCCcccH
Q 032386 12 VCHGNFNVPCQANCSHWFCG 31 (142)
Q Consensus 12 IC~~~~~~pv~~~CgH~fC~ 31 (142)
||++.-..-+.-.|||+||.
T Consensus 62 i~qs~~~rv~rcecghsf~d 81 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGD 81 (165)
T ss_pred EEecccccEEEEeccccccC
Confidence 45554444344579999996
No 143
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.57 E-value=4.9 Score=31.42 Aligned_cols=46 Identities=37% Similarity=0.898 Sum_probs=37.6
Q ss_pred cccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 8 DVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
..|-||.+.+..|-... |+|-||.-|-..|.+.+. .||.|+...+.
T Consensus 106 ~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~-----~~~d~~~~~~p 152 (324)
T KOG0824|consen 106 DICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGN-----DCPDCRGKISP 152 (324)
T ss_pred cceeeeeeeEEecccccCceeeeeecCCchhhhhhh-----ccchhhcCcCc
Confidence 57888999998887765 999999999988877765 78888876663
No 144
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=53.34 E-value=11 Score=28.50 Aligned_cols=25 Identities=24% Similarity=0.691 Sum_probs=20.2
Q ss_pred ccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 29 FCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 29 fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
-|.+|-.+..++++ .||+|+.....
T Consensus 251 ~ClsChqqIHRNAP-----iCPlCKaKsRS 275 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAP-----ICPLCKAKSRS 275 (286)
T ss_pred HHHHHHHHHhcCCC-----CCcchhhcccc
Confidence 48899999888876 89999987443
No 145
>PF11809 DUF3330: Domain of unknown function (DUF3330); InterPro: IPR021767 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=52.48 E-value=6.9 Score=23.64 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=23.6
Q ss_pred cccccccc-cccCceeecCC----CcccH-hHHHHHHHhC
Q 032386 8 DVCSVCHG-NFNVPCQANCS----HWFCG-NCIMLVWDHG 41 (142)
Q Consensus 8 ~~CpIC~~-~~~~pv~~~Cg----H~fC~-~Ci~~~~~~~ 41 (142)
.+|.+|.. +..+...++=| +.||+ +|..+|..++
T Consensus 12 ~sC~vC~KEIPl~~a~t~E~~eYV~hFCGLeCY~~w~a~~ 51 (70)
T PF11809_consen 12 TSCCVCCKEIPLDAAFTPEAAEYVEHFCGLECYQRWQARA 51 (70)
T ss_pred chHHHHhhhCChhhccCcchHHHHHHHhhHHHHHHHHHHH
Confidence 78888876 44455555533 56887 8999987665
No 146
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=51.79 E-value=4.8 Score=32.63 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=0.0
Q ss_pred eeecCCCcccHhHHHHHHHhCC-CCCCCCCCCCccc
Q 032386 21 CQANCSHWFCGNCIMLVWDHGS-TLQACRCPLCRRR 55 (142)
Q Consensus 21 v~~~CgH~fC~~Ci~~~~~~~~-~~~~~~CP~Cr~~ 55 (142)
|.++|||.+-.- .|-.... ......||+|++.
T Consensus 305 VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 305 VYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------
T ss_pred eeccccceeeec---ccccccccccccccCCCcccc
Confidence 447899977653 3322211 1124589999975
No 147
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=51.73 E-value=6 Score=22.48 Aligned_cols=10 Identities=50% Similarity=1.265 Sum_probs=5.1
Q ss_pred CCCCCccccc
Q 032386 48 RCPLCRRRIT 57 (142)
Q Consensus 48 ~CP~Cr~~~~ 57 (142)
.||+|.++++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 8999998854
No 148
>PF14353 CpXC: CpXC protein
Probab=50.81 E-value=15 Score=24.55 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=26.7
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+||-|...+...+-+.-.-..=.+=..+.+ .+. .-...||.|...+.
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il-~g~-l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKIL-DGS-LFSFTCPSCGHKFR 49 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHH-cCC-cCEEECCCCCCcee
Confidence 5788888777655444332222222233323 222 33458999998876
No 149
>PLN02400 cellulose synthase
Probab=50.62 E-value=15 Score=33.70 Aligned_cols=48 Identities=21% Similarity=0.508 Sum_probs=32.7
Q ss_pred cccccccccccC-----ce--eecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccccc
Q 032386 8 DVCSVCHGNFNV-----PC--QANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLL 59 (142)
Q Consensus 8 ~~CpIC~~~~~~-----pv--~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l 59 (142)
..|.||-|..-. +- .-.|+---|+.|. +|=++ -+...||.|+......
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERk---eGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERK---DGTQCCPQCKTRYRRH 91 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchh-heecc---cCCccCcccCCccccc
Confidence 489999997531 21 1248888999999 43222 2345999999887743
No 150
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.48 E-value=9 Score=27.07 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=21.2
Q ss_pred CCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 25 CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 25 CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
=.+.||.+|-.+-+. .||.|..++.
T Consensus 26 ~~~~fC~kCG~~tI~--------~Cp~C~~~Ir 50 (158)
T PF10083_consen 26 LREKFCSKCGAKTIT--------SCPNCSTPIR 50 (158)
T ss_pred HHHHHHHHhhHHHHH--------HCcCCCCCCC
Confidence 457899999999775 6999999887
No 151
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=50.22 E-value=27 Score=32.11 Aligned_cols=47 Identities=23% Similarity=0.598 Sum_probs=32.4
Q ss_pred ccccccccccc-----Cc-ee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 8 DVCSVCHGNFN-----VP-CQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 8 ~~CpIC~~~~~-----~p-v~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
..|-||-|..- ++ |. -.||---|..|. +|=++. |...||.|++....
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~e---G~q~CPqCktrYkr 71 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKD---GNQSCPQCKTKYKR 71 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhc---CCccCCccCCchhh
Confidence 58999999753 12 11 248888999999 443332 33599999988773
No 152
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=49.27 E-value=13 Score=24.58 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=8.5
Q ss_pred CCCCCCCccccc
Q 032386 46 ACRCPLCRRRIT 57 (142)
Q Consensus 46 ~~~CP~Cr~~~~ 57 (142)
+..||.|...+.
T Consensus 26 PivCP~CG~~~~ 37 (108)
T PF09538_consen 26 PIVCPKCGTEFP 37 (108)
T ss_pred CccCCCCCCccC
Confidence 457888887655
No 153
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=16 Score=31.74 Aligned_cols=49 Identities=22% Similarity=0.624 Sum_probs=37.4
Q ss_pred ccccccccccCceeecCCC-cccHhHHHHHHHhCC-CCCCCCCCCCccccc
Q 032386 9 VCSVCHGNFNVPCQANCSH-WFCGNCIMLVWDHGS-TLQACRCPLCRRRIT 57 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~~CgH-~fC~~Ci~~~~~~~~-~~~~~~CP~Cr~~~~ 57 (142)
.|+||-.-...+..-+||| .-|..|..+...... ......||+|+..+.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 6999999888888889999 999999988644322 112346899998766
No 154
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=48.51 E-value=3 Score=24.03 Aligned_cols=14 Identities=29% Similarity=0.690 Sum_probs=12.4
Q ss_pred cCCCcccHhHHHHH
Q 032386 24 NCSHWFCGNCIMLV 37 (142)
Q Consensus 24 ~CgH~fC~~Ci~~~ 37 (142)
.|+|.||..|-..|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 58999999998886
No 155
>PF14369 zf-RING_3: zinc-finger
Probab=48.29 E-value=3 Score=21.81 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=14.0
Q ss_pred cccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 28 WFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 28 ~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
-||..|-..........+...||.|...
T Consensus 3 ywCh~C~~~V~~~~~~~~~~~CP~C~~g 30 (35)
T PF14369_consen 3 YWCHQCNRFVRIAPSPDSDVACPRCHGG 30 (35)
T ss_pred EeCccCCCEeEeCcCCCCCcCCcCCCCc
Confidence 3666666443222111223359999754
No 156
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=48.15 E-value=13 Score=32.09 Aligned_cols=49 Identities=18% Similarity=0.547 Sum_probs=35.2
Q ss_pred cccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|||+.-.+..|+.. .|+|.-|..-.. +++...+...+.||+|.+...
T Consensus 307 L~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 307 LNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred ecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCcccc
Confidence 6899999988888774 599988887653 233333355679999987644
No 157
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=47.73 E-value=10 Score=25.30 Aligned_cols=46 Identities=20% Similarity=0.572 Sum_probs=29.2
Q ss_pred CccccccccccccC-----ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 6 CGDVCSVCHGNFNV-----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 6 ~~~~CpIC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.+..|.+|...|.. .+-..|+|..|..|-.. . +......|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---~-~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---S-KKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---T-SSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---C-CCCCCEEChhhHHH
Confidence 55799999875431 23357999999999855 1 11234578888765
No 158
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=46.27 E-value=9 Score=20.02 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=8.3
Q ss_pred CCCCCCCccccc
Q 032386 46 ACRCPLCRRRIT 57 (142)
Q Consensus 46 ~~~CP~Cr~~~~ 57 (142)
...||.|...+.
T Consensus 26 ~~~CP~Cg~~~~ 37 (41)
T smart00834 26 LATCPECGGDVR 37 (41)
T ss_pred CCCCCCCCCcce
Confidence 357999987543
No 159
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=45.25 E-value=3.6 Score=31.73 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=21.2
Q ss_pred ccccccccccccCceeec-----CCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 7 GDVCSVCHGNFNVPCQAN-----CSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~-----CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
...||+|-....-.+... =.|-+|.-|-.+|--.. ..||.|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R-----~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVR-----IKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--T-----TS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecC-----CCCcCCCCC
Confidence 369999998765444433 24678999998863332 489999764
No 160
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=44.09 E-value=15 Score=27.83 Aligned_cols=23 Identities=26% Similarity=0.826 Sum_probs=17.6
Q ss_pred ccccccccccCceeecCCCcccHhHHHHHHH
Q 032386 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWD 39 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~ 39 (142)
.|+||. .+-.+.||..|+..-+.
T Consensus 1 ~C~iC~--------~~~~~~~C~~C~~~~L~ 23 (302)
T PF10186_consen 1 QCPICH--------NSRRRFYCANCVNNRLL 23 (302)
T ss_pred CCCCCC--------CCCCCeECHHHHHHHHH
Confidence 599999 34667899999977544
No 161
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.78 E-value=27 Score=23.33 Aligned_cols=41 Identities=34% Similarity=0.733 Sum_probs=24.6
Q ss_pred cccccccccccCce--------------eecCCCcccHhHHHHHHHhCCCCCCCCCCCCc
Q 032386 8 DVCSVCHGNFNVPC--------------QANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53 (142)
Q Consensus 8 ~~CpIC~~~~~~pv--------------~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr 53 (142)
..|--|+..|..+. -..|++.||.+|=.=+.+.- -.||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~L-----h~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESL-----HCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhc-----cCCcCCC
Confidence 34777777665431 24588888888864433332 2677774
No 162
>PRK04023 DNA polymerase II large subunit; Validated
Probab=43.66 E-value=19 Score=32.89 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=30.9
Q ss_pred CCCccccccccccccCceeecCCC-----cccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQANCSH-----WFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~~CgH-----~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.....|+-|-.........+||. .||..|-.. .....||-|.....
T Consensus 623 EVg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~-------~~~y~CPKCG~El~ 674 (1121)
T PRK04023 623 EIGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE-------VEEDECEKCGREPT 674 (1121)
T ss_pred cccCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc-------CCCCcCCCCCCCCC
Confidence 344568998888765555567884 589999211 22347999987644
No 163
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=42.77 E-value=7.3 Score=19.22 Aligned_cols=26 Identities=19% Similarity=0.523 Sum_probs=9.6
Q ss_pred cccccccccccCceeecCCCcccHhH
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNC 33 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~C 33 (142)
..|+.|...+.+-..-.=...||..|
T Consensus 2 ~~C~rC~~~~~~~~~~~r~~~~C~rC 27 (30)
T PF06827_consen 2 EKCPRCWNYIEDIGINGRSTYLCPRC 27 (30)
T ss_dssp SB-TTT--BBEEEEETTEEEEE-TTT
T ss_pred CcCccCCCcceEeEecCCCCeECcCC
Confidence 35666666655433322333344433
No 164
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.12 E-value=13 Score=23.88 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=12.9
Q ss_pred cccHhHHHHHHHhCC
Q 032386 28 WFCGNCIMLVWDHGS 42 (142)
Q Consensus 28 ~fC~~Ci~~~~~~~~ 42 (142)
.||..|+..|.+.+.
T Consensus 42 gFCRNCLs~Wy~eaa 56 (104)
T COG3492 42 GFCRNCLSNWYREAA 56 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 599999999998764
No 165
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=41.75 E-value=11 Score=20.26 Aligned_cols=26 Identities=23% Similarity=0.744 Sum_probs=12.4
Q ss_pred cccccccccccCceee---cCCCcccHhH
Q 032386 8 DVCSVCHGNFNVPCQA---NCSHWFCGNC 33 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~---~CgH~fC~~C 33 (142)
.-||+|-..=...+.. .=||++|..|
T Consensus 4 ~pCP~CGG~DrFri~~d~~~~G~~~C~~C 32 (40)
T PF08273_consen 4 GPCPICGGKDRFRIFDDKDGRGTWICRQC 32 (40)
T ss_dssp E--TTTT-TTTEEEETT----S-EEETTT
T ss_pred CCCCCCcCccccccCcCcccCCCEECCCC
Confidence 3588987643322222 2489999888
No 166
>PF10038 DUF2274: Protein of unknown function (DUF2274); InterPro: IPR018733 Members of this family of hypothetical bacterial proteins have no known function.
Probab=40.01 E-value=28 Score=21.14 Aligned_cols=40 Identities=10% Similarity=0.254 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhCCCCCCcchhhhhhchhHHHHHHHHHHhCcCCCc
Q 032386 77 ILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVDPHRSL 122 (142)
Q Consensus 77 ~~~~i~~~n~~~~~~~~~~~~~~~l~d~p~l~~~~~~~~~~~~~~~ 122 (142)
+..++..|...++.+. ..-.+...|+..|+..|+..++++
T Consensus 25 l~rdL~~Ya~~~~~~~------g~~~~~~~Li~~MLerFmatDRgF 64 (69)
T PF10038_consen 25 LHRDLVAYAEALAREY------GQAADPAKLIPPMLERFMATDRGF 64 (69)
T ss_pred HHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHHHHHhcHHH
Confidence 4466777766665433 111477789999999999988765
No 167
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.90 E-value=6.9 Score=32.32 Aligned_cols=44 Identities=23% Similarity=0.461 Sum_probs=33.5
Q ss_pred CCccccccc-cccccCceeec--CCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 5 PCGDVCSVC-HGNFNVPCQAN--CSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 5 ~~~~~CpIC-~~~~~~pv~~~--CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
+++..|++| .+.+.+...+. |.-+||..||.+-+..+ .++.|.+
T Consensus 217 ~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~------~~~~c~~ 263 (448)
T KOG0314|consen 217 PEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK------SMCVCGA 263 (448)
T ss_pred CccccCceecchhhHHHHHhhhhhcccCCccccccccccc------cCCcchh
Confidence 677899999 77787777774 88999999998866554 4555544
No 168
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=38.97 E-value=6.9 Score=22.44 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=8.7
Q ss_pred HHhCCCCCCCCCCCCccccc
Q 032386 38 WDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 38 ~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.+..+..+.+||.|...+.
T Consensus 16 k~~~~S~~PatCP~C~a~~~ 35 (54)
T PF09237_consen 16 KSKSQSEQPATCPICGAVIR 35 (54)
T ss_dssp CCCCTTS--EE-TTT--EES
T ss_pred HHhhccCCCCCCCcchhhcc
Confidence 33333344568999988643
No 169
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=38.84 E-value=22 Score=17.69 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=6.8
Q ss_pred ccccccccccC
Q 032386 9 VCSVCHGNFNV 19 (142)
Q Consensus 9 ~CpIC~~~~~~ 19 (142)
.|..|...+..
T Consensus 1 ~C~~C~~~i~~ 11 (39)
T smart00132 1 KCAGCGKPIRG 11 (39)
T ss_pred CccccCCcccC
Confidence 36667776554
No 170
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=38.68 E-value=12 Score=29.45 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=29.9
Q ss_pred CccccccccccccCcee-e--c--CCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 6 CGDVCSVCHGNFNVPCQ-A--N--CSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~-~--~--CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
....||+|-....-.+. . . =.|-+|.-|-.+|--.. ..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R-----~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR-----VKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC-----ccCCCCCC
Confidence 45799999987654432 1 2 23567888988864332 48999985
No 171
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=38.54 E-value=14 Score=17.78 Aligned_cols=8 Identities=50% Similarity=1.555 Sum_probs=4.0
Q ss_pred CCCCcccc
Q 032386 49 CPLCRRRI 56 (142)
Q Consensus 49 CP~Cr~~~ 56 (142)
||+|.+.+
T Consensus 4 CPiC~~~v 11 (26)
T smart00734 4 CPVCFREV 11 (26)
T ss_pred CCCCcCcc
Confidence 55554444
No 172
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=37.93 E-value=26 Score=27.77 Aligned_cols=47 Identities=6% Similarity=-0.087 Sum_probs=32.2
Q ss_pred ccccccccccccCceeecCCC-cccHhHHHHHHHhCCCCCCCCCCCCcccccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSH-WFCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH-~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~ 60 (142)
.++|-.|-.-+-.-+-.+|+| .||.+|..- .. ...||+|....-.++
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~-----~~~~~~c~~~~~~~~ 390 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SA-----SPTSSTCDHNDHTLV 390 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhc--cc-----CCccccccccceeee
Confidence 357777777665556678998 789999872 22 248999976544433
No 173
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=37.65 E-value=19 Score=32.15 Aligned_cols=31 Identities=26% Similarity=0.496 Sum_probs=23.1
Q ss_pred cccccccccccC-c--------eeecCCCcccHhHHHHHH
Q 032386 8 DVCSVCHGNFNV-P--------CQANCSHWFCGNCIMLVW 38 (142)
Q Consensus 8 ~~CpIC~~~~~~-p--------v~~~CgH~fC~~Ci~~~~ 38 (142)
..|..|...|.. . ..-.||..||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 579999998852 1 123699999999996643
No 174
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=37.11 E-value=11 Score=29.70 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=29.4
Q ss_pred ccccccccccccCceee----c--CCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 7 GDVCSVCHGNFNVPCQA----N--CSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~----~--CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
...||+|-....-.+.. . =.+-+|.-|-.+|--.. ..||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R-----~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR-----VKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC-----ccCCCCCCC
Confidence 35999999876543322 1 23567888888864332 489999864
No 175
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=36.52 E-value=32 Score=18.89 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=13.1
Q ss_pred hhhhhchhHHHHHHHHHH
Q 032386 98 FQRIQDLPFLLRRLVREL 115 (142)
Q Consensus 98 ~~~l~d~p~l~~~~~~~~ 115 (142)
...|..+|+++|..++.-
T Consensus 6 ~~~L~~iP~fvR~~~r~~ 23 (45)
T PF08369_consen 6 EARLDRIPFFVRKKLRDA 23 (45)
T ss_dssp HHHHCTS-HHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHH
Confidence 356778899999988763
No 176
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=36.07 E-value=24 Score=27.02 Aligned_cols=51 Identities=20% Similarity=0.554 Sum_probs=35.4
Q ss_pred CCCccccccccccccC----ceeecCC-----CcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNV----PCQANCS-----HWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~----pv~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
|.++..|-||...... +..++|. +.....|+..|...+ +...|..|.....
T Consensus 75 ~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~---~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 75 PSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIK---GNITCEICKSFFI 134 (323)
T ss_pred CCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccc---cCeeeecccccce
Confidence 4445789999985532 5566654 234689999998753 3468999987655
No 177
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=36.06 E-value=3.3 Score=20.94 Aligned_cols=27 Identities=37% Similarity=0.661 Sum_probs=10.2
Q ss_pred CcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 27 HWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 27 H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
|.||..|=........ .-...||.|..
T Consensus 3 ~rfC~~CG~~t~~~~~-g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPG-GWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SS-SS-EEESSSS-
T ss_pred CcccCcCCccccCCCC-cCEeECCCCcC
Confidence 5666666644322211 22345666654
No 178
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=36.02 E-value=59 Score=29.91 Aligned_cols=49 Identities=22% Similarity=0.448 Sum_probs=33.2
Q ss_pred Ccccccccccccc-----Ccee--ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 6 CGDVCSVCHGNFN-----VPCQ--ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 6 ~~~~CpIC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
....|.||-|..- +|-+ -.|+---|..|. +|=++ .+...||.|++....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~---~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERS---EGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhh---cCCccCCccCCchhh
Confidence 3468999998753 2222 248888999999 44333 233589999988763
No 179
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=34.30 E-value=15 Score=19.24 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=7.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
.+||-|...+..
T Consensus 3 i~CP~C~~~f~v 14 (37)
T PF13719_consen 3 ITCPNCQTRFRV 14 (37)
T ss_pred EECCCCCceEEc
Confidence 367777776654
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=34.26 E-value=19 Score=31.96 Aligned_cols=53 Identities=26% Similarity=0.573 Sum_probs=29.1
Q ss_pred CCCccccccccccccCceee-----cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQA-----NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~-----~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++.+.+||-|...|...+.+ .=--|.|..|-.....+.- +....||.|.....
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EI-s~y~~CPLCHs~~~ 1185 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEI-SKYNCCPLCHSMES 1185 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEccccccccccccc-cccccCccccChhh
Confidence 46678999998877432211 1113445555444333322 33458999987644
No 181
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=33.64 E-value=18 Score=20.42 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=5.2
Q ss_pred CCcccccccc
Q 032386 5 PCGDVCSVCH 14 (142)
Q Consensus 5 ~~~~~CpIC~ 14 (142)
+++..||+|.
T Consensus 32 p~~w~CP~C~ 41 (50)
T cd00730 32 PDDWVCPVCG 41 (50)
T ss_pred CCCCCCCCCC
Confidence 4445555554
No 182
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=33.02 E-value=4.2 Score=19.11 Aligned_cols=7 Identities=43% Similarity=1.103 Sum_probs=3.3
Q ss_pred CCCCCcc
Q 032386 48 RCPLCRR 54 (142)
Q Consensus 48 ~CP~Cr~ 54 (142)
-||.|..
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 4555543
No 183
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=32.11 E-value=18 Score=19.42 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=7.8
Q ss_pred CCCCCCCCcc
Q 032386 45 QACRCPLCRR 54 (142)
Q Consensus 45 ~~~~CP~Cr~ 54 (142)
....||.|..
T Consensus 25 ~~~~CP~Cg~ 34 (42)
T PF09723_consen 25 DPVPCPECGS 34 (42)
T ss_pred CCCcCCCCCC
Confidence 3468999987
No 184
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=31.76 E-value=24 Score=20.08 Aligned_cols=24 Identities=33% Similarity=0.955 Sum_probs=13.0
Q ss_pred cCCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 24 NCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 24 ~CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
.|++.||.+|=. +.+.. .-.||-|
T Consensus 26 ~C~~~FC~dCD~--fiHE~---LH~CPGC 49 (51)
T PF07975_consen 26 KCKNHFCIDCDV--FIHET---LHNCPGC 49 (51)
T ss_dssp TTT--B-HHHHH--TTTTT---S-SSSTT
T ss_pred CCCCccccCcCh--hhhcc---ccCCcCC
Confidence 599999999963 33322 2378877
No 185
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=31.73 E-value=28 Score=17.59 Aligned_cols=9 Identities=33% Similarity=0.995 Sum_probs=5.3
Q ss_pred CCCCCCccc
Q 032386 47 CRCPLCRRR 55 (142)
Q Consensus 47 ~~CP~Cr~~ 55 (142)
..||.|...
T Consensus 18 ~~CP~Cg~~ 26 (33)
T cd00350 18 WVCPVCGAP 26 (33)
T ss_pred CcCcCCCCc
Confidence 366666653
No 186
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=31.71 E-value=32 Score=18.75 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=14.0
Q ss_pred cccccccccCceeecCCCcccHh
Q 032386 10 CSVCHGNFNVPCQANCSHWFCGN 32 (142)
Q Consensus 10 CpIC~~~~~~pv~~~CgH~fC~~ 32 (142)
|..|...-..=+-+.|+|.+|..
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~ 24 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGR 24 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCC
Confidence 55666444333456788888854
No 187
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=30.40 E-value=35 Score=23.33 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=5.9
Q ss_pred CCCCCCcccc
Q 032386 47 CRCPLCRRRI 56 (142)
Q Consensus 47 ~~CP~Cr~~~ 56 (142)
..||.|....
T Consensus 27 ~vcP~cg~~~ 36 (129)
T TIGR02300 27 AVSPYTGEQF 36 (129)
T ss_pred ccCCCcCCcc
Confidence 4666666554
No 188
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=30.27 E-value=15 Score=20.88 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=17.3
Q ss_pred Ccccccc--ccccccC-----c--ee-ecCCCcccHhHHHHH
Q 032386 6 CGDVCSV--CHGNFNV-----P--CQ-ANCSHWFCGNCIMLV 37 (142)
Q Consensus 6 ~~~~CpI--C~~~~~~-----p--v~-~~CgH~fC~~Ci~~~ 37 (142)
+-..||- |...+.. . +. ..|++.||..|-..|
T Consensus 17 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 17 NIRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp -CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 3357876 8776541 1 33 249999999998775
No 189
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=29.90 E-value=33 Score=16.19 Aligned_cols=11 Identities=36% Similarity=1.223 Sum_probs=8.4
Q ss_pred CCCCCCccccc
Q 032386 47 CRCPLCRRRIT 57 (142)
Q Consensus 47 ~~CP~Cr~~~~ 57 (142)
..||.|.+.+.
T Consensus 3 ~~C~~CgR~F~ 13 (25)
T PF13913_consen 3 VPCPICGRKFN 13 (25)
T ss_pred CcCCCCCCEEC
Confidence 47999988754
No 190
>KOG4604 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.08 E-value=30 Score=22.12 Aligned_cols=48 Identities=13% Similarity=-0.020 Sum_probs=36.2
Q ss_pred cCCCchHhhHHHHHHHHHHhhCCCCCCcchhhhhhchhHHHHHHHHHHhC
Q 032386 68 QRHDPAVGDILQKVESYNRIFGGPTTANGLFQRIQDLPFLLRRLVRELVD 117 (142)
Q Consensus 68 ~~~~~~~~~~~~~i~~~n~~~~~~~~~~~~~~~l~d~p~l~~~~~~~~~~ 117 (142)
++.+.+..+..-+...+|+.+.+.+ ...++.+..++|+.++.+-.+++
T Consensus 10 ~~~~e~~~~~~~d~clad~l~kg~s--g~~ig~v~s~~ffr~~~wpiw~g 57 (91)
T KOG4604|consen 10 SRNSESELGRKWDRCLADSLVKGGS--GLGIGIVVSLLFFRRREWPIWLG 57 (91)
T ss_pred cCCcHhhhhhhhhHHHHHHHhccCc--ceeeehhhhhhhhcceeeeeecC
Confidence 3444555555666788999998887 78888888899998888777666
No 191
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=28.76 E-value=29 Score=20.61 Aligned_cols=11 Identities=27% Similarity=1.011 Sum_probs=8.9
Q ss_pred CCCCCCccccc
Q 032386 47 CRCPLCRRRIT 57 (142)
Q Consensus 47 ~~CP~Cr~~~~ 57 (142)
..||.|++++.
T Consensus 7 v~CP~C~k~~~ 17 (62)
T PRK00418 7 VNCPTCGKPVE 17 (62)
T ss_pred ccCCCCCCccc
Confidence 58999999754
No 192
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=28.49 E-value=34 Score=17.55 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=6.7
Q ss_pred CCCCCCCcccc
Q 032386 46 ACRCPLCRRRI 56 (142)
Q Consensus 46 ~~~CP~Cr~~~ 56 (142)
...||.|...+
T Consensus 25 ~v~C~~C~~~~ 35 (38)
T TIGR02098 25 KVRCGKCGHVW 35 (38)
T ss_pred EEECCCCCCEE
Confidence 34677776653
No 193
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=28.43 E-value=41 Score=17.49 Aligned_cols=29 Identities=24% Similarity=0.643 Sum_probs=14.0
Q ss_pred ccHhHHHHHHHhCCC---CCCCCCCCCccccc
Q 032386 29 FCGNCIMLVWDHGST---LQACRCPLCRRRIT 57 (142)
Q Consensus 29 fC~~Ci~~~~~~~~~---~~~~~CP~Cr~~~~ 57 (142)
.|.+|..++.....- ....+|+.|.-.++
T Consensus 1 lC~~C~~Ey~~p~~RR~~~~~isC~~CGPr~~ 32 (35)
T PF07503_consen 1 LCDDCLKEYFDPSNRRFHYQFISCTNCGPRYS 32 (35)
T ss_dssp --HHHHHHHCSTTSTTTT-TT--BTTCC-SCC
T ss_pred CCHHHHHHHcCCCCCcccCcCccCCCCCCCEE
Confidence 377888887553321 22348988875543
No 194
>PRK11595 DNA utilization protein GntX; Provisional
Probab=28.28 E-value=40 Score=24.96 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=22.3
Q ss_pred ccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
.|.+|...+... .+..|..|...+-.-. ..||.|..+.
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~-----~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTLK-----TCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCccc-----CcCccCCCcC
Confidence 588888765322 1346888876642111 2677777653
No 195
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=28.21 E-value=59 Score=25.23 Aligned_cols=35 Identities=23% Similarity=0.541 Sum_probs=23.7
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCC-----CCCCCCCCCCcccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS-----TLQACRCPLCRRRITL 58 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~CP~Cr~~~~~ 58 (142)
.+|+||-..|..| |+-++. .-.++.||.|.+.|.+
T Consensus 188 c~C~iCGKaFSRP----------------WLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 188 CECGICGKAFSRP----------------WLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccccccccch----------------HHhhcccccccCCCCccCCcccchhcc
Confidence 5788888888876 555432 1235678888888774
No 196
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=27.79 E-value=25 Score=19.88 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=18.2
Q ss_pred CCCcccHhHH-HHHHHhCCC-CCCCCCCCCccc
Q 032386 25 CSHWFCGNCI-MLVWDHGST-LQACRCPLCRRR 55 (142)
Q Consensus 25 CgH~fC~~Ci-~~~~~~~~~-~~~~~CP~Cr~~ 55 (142)
||-.|-..-- .+||..... +.+..||.||+.
T Consensus 10 Cg~~FvfTa~EQ~fy~eKgf~n~p~RC~~CR~~ 42 (49)
T PF13451_consen 10 CGAEFVFTAGEQKFYAEKGFDNEPKRCPSCRQA 42 (49)
T ss_pred CCCeEEEehhHHHHHHhcCCcCCCccCHHHHHH
Confidence 5544443332 245555443 467899999975
No 197
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=27.61 E-value=26 Score=19.39 Aligned_cols=10 Identities=30% Similarity=0.823 Sum_probs=7.7
Q ss_pred CCCCCCCCcc
Q 032386 45 QACRCPLCRR 54 (142)
Q Consensus 45 ~~~~CP~Cr~ 54 (142)
+...||.|..
T Consensus 25 ~~~~CP~Cg~ 34 (52)
T TIGR02605 25 PLATCPECGG 34 (52)
T ss_pred CCCCCCCCCC
Confidence 3457999987
No 198
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=27.51 E-value=23 Score=19.76 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=3.5
Q ss_pred CCcccccccc
Q 032386 5 PCGDVCSVCH 14 (142)
Q Consensus 5 ~~~~~CpIC~ 14 (142)
+++..||+|.
T Consensus 32 p~~w~CP~C~ 41 (47)
T PF00301_consen 32 PDDWVCPVCG 41 (47)
T ss_dssp -TT-B-TTTS
T ss_pred CCCCcCcCCC
Confidence 4445555553
No 199
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=27.14 E-value=1.4e+02 Score=17.70 Aligned_cols=38 Identities=24% Similarity=0.617 Sum_probs=24.1
Q ss_pred CCCccccccccccccC-----ceeecCCCcccHhHHHHHHHhCC
Q 032386 4 PPCGDVCSVCHGNFNV-----PCQANCSHWFCGNCIMLVWDHGS 42 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~ 42 (142)
|++...||-|...-+. -..++=-..||..|-.- |.++.
T Consensus 2 ~~~~~~CPRC~S~nTKFcYyNNy~~~QPR~~Ck~C~ry-wT~GG 44 (63)
T PF02701_consen 2 PEQPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKSCRRY-WTHGG 44 (63)
T ss_pred CccCCCCCCcCCCCCEEEeecCCCCCCcchhhHHHHHH-HHhcc
Confidence 5677899999875432 12233345699999865 55543
No 200
>COG5639 Uncharacterized conserved small protein [Function unknown]
Probab=27.09 E-value=83 Score=19.33 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=16.8
Q ss_pred hchhHHHHHHHHHHhCcCCCc
Q 032386 102 QDLPFLLRRLVRELVDPHRSL 122 (142)
Q Consensus 102 ~d~p~l~~~~~~~~~~~~~~~ 122 (142)
.+...|+-.|+..|+..+|++
T Consensus 44 ~~~a~Lia~MLe~Fla~DR~F 64 (77)
T COG5639 44 ATPATLIAHMLEAFLAGDRGF 64 (77)
T ss_pred cCHHHHHHHHHHHHHhccHHH
Confidence 367789999999999877664
No 201
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=27.07 E-value=45 Score=17.64 Aligned_cols=22 Identities=27% Similarity=0.952 Sum_probs=11.9
Q ss_pred cccccccccC-ceeec-CCCcccH
Q 032386 10 CSVCHGNFNV-PCQAN-CSHWFCG 31 (142)
Q Consensus 10 CpIC~~~~~~-pv~~~-CgH~fC~ 31 (142)
|.+|...... |..=+ |+..||.
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~ 24 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCG 24 (39)
T ss_pred CcccCCcccccCeECCccCCcccc
Confidence 3445543333 55544 7777776
No 202
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=26.73 E-value=17 Score=25.54 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=17.0
Q ss_pred CCCcccHhHHHHHHHhCC------CCCCCCCCCCccc
Q 032386 25 CSHWFCGNCIMLVWDHGS------TLQACRCPLCRRR 55 (142)
Q Consensus 25 CgH~fC~~Ci~~~~~~~~------~~~~~~CP~Cr~~ 55 (142)
+||.|=+ |+.++. ..+..+||+|...
T Consensus 10 ~gH~FEg-----WF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 10 NGHEFEG-----WFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCccce-----ecCCHHHHHHHHHcCCccCCCCCCC
Confidence 6787743 665432 2567899999854
No 203
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=26.34 E-value=34 Score=25.04 Aligned_cols=38 Identities=29% Similarity=0.853 Sum_probs=25.6
Q ss_pred ccccccccc-cccCc----ee---ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 7 GDVCSVCHG-NFNVP----CQ---ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 7 ~~~CpIC~~-~~~~p----v~---~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
++.|-+|.+ .+-.| .+ -.|+..|...|..+ . .||-|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~-----~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----K-----SCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----C-----CCCCcHh
Confidence 578889985 22222 11 25899999999863 2 7999965
No 204
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=26.09 E-value=75 Score=18.42 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 032386 124 LVIRARVYIAILTFFSYL 141 (142)
Q Consensus 124 ~~~~~r~~~~~~~~~~y~ 141 (142)
++..+..+++.+.+++|+
T Consensus 3 f~~~~lLyFctvVcaLYL 20 (59)
T PF07125_consen 3 FVQTILLYFCTVVCALYL 20 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566778899999987
No 205
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=25.83 E-value=16 Score=28.32 Aligned_cols=31 Identities=32% Similarity=0.577 Sum_probs=20.9
Q ss_pred CCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 25 CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 25 CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
=.|.||..|-.+.-... ..-...||.|+...
T Consensus 109 ~~~RFCg~CG~~~~~~~-~g~~~~C~~cg~~~ 139 (279)
T COG2816 109 RSHRFCGRCGTKTYPRE-GGWARVCPKCGHEH 139 (279)
T ss_pred hhCcCCCCCCCcCcccc-CceeeeCCCCCCcc
Confidence 46889999987743332 24456899998654
No 206
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=25.34 E-value=23 Score=20.64 Aligned_cols=11 Identities=27% Similarity=1.186 Sum_probs=5.7
Q ss_pred CCCCCcccccc
Q 032386 48 RCPLCRRRITL 58 (142)
Q Consensus 48 ~CP~Cr~~~~~ 58 (142)
.||.|++.+..
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 79999998653
No 207
>PHA03164 hypothetical protein; Provisional
Probab=25.20 E-value=1.3e+02 Score=18.68 Aligned_cols=45 Identities=11% Similarity=0.280 Sum_probs=23.2
Q ss_pred cchhhhhhchhHHHHHHHHHHhCcCCCchhhHHHHHHHHHHHHHhh
Q 032386 95 NGLFQRIQDLPFLLRRLVRELVDPHRSLPLVIRARVYIAILTFFSY 140 (142)
Q Consensus 95 ~~~~~~l~d~p~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~y 140 (142)
.++++-+. -|..-+-.++.|=...+...++.=.-..|++++.+++
T Consensus 32 tsfveclp-PpqisrtawnlwnnrRktftFlvLtgLaIamILfiif 76 (88)
T PHA03164 32 TSFVECLP-PPQISRTAWNLWNNRRKTFTFLVLTGLAIAMILFIIF 76 (88)
T ss_pred cccceecC-CcccCchhHHHHHhhhheeehHHHHHHHHHHHHHHHH
Confidence 44444332 3444555666666655555555544555555555443
No 208
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=24.93 E-value=49 Score=18.64 Aligned_cols=6 Identities=50% Similarity=1.486 Sum_probs=4.5
Q ss_pred CCCCCC
Q 032386 47 CRCPLC 52 (142)
Q Consensus 47 ~~CP~C 52 (142)
..||.|
T Consensus 50 ~~CP~C 55 (55)
T PF14311_consen 50 KGCPYC 55 (55)
T ss_pred CCCCCC
Confidence 478887
No 209
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.18 E-value=43 Score=22.94 Aligned_cols=23 Identities=30% Similarity=0.814 Sum_probs=17.5
Q ss_pred CcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 27 HWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 27 H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..||..|-..-+. .||.|..++.
T Consensus 28 eafcskcgeati~--------qcp~csasir 50 (160)
T COG4306 28 EAFCSKCGEATIT--------QCPICSASIR 50 (160)
T ss_pred HHHHhhhchHHHh--------cCCccCCccc
Confidence 3588888876553 6999998876
No 210
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=23.85 E-value=49 Score=21.80 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=20.0
Q ss_pred eecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccccccC
Q 032386 22 QANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (142)
Q Consensus 22 ~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~~ 62 (142)
.|+|||.|=.- .+-+.+ .||-|....-...|.
T Consensus 5 CtrCG~vf~~g--~~~il~-------GCp~CG~nkF~yv~~ 36 (112)
T COG3364 5 CTRCGEVFDDG--SEEILS-------GCPKCGCNKFLYVPE 36 (112)
T ss_pred ecccccccccc--cHHHHc-------cCccccchheEeccc
Confidence 47899988764 222333 699998664444444
No 211
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=23.29 E-value=82 Score=28.03 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=24.6
Q ss_pred ccccccccccCcee--ecCCCcccHhHHHHHHHhCC
Q 032386 9 VCSVCHGNFNVPCQ--ANCSHWFCGNCIMLVWDHGS 42 (142)
Q Consensus 9 ~CpIC~~~~~~pv~--~~CgH~fC~~Ci~~~~~~~~ 42 (142)
.|.+|-..+.---. --|||.-..+|+.+|+..+.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s 816 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKAS 816 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCC
Confidence 57777766553212 23999999999999988765
No 212
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=23.14 E-value=36 Score=25.88 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=25.9
Q ss_pred ccccccccccccCcee-ecCCCcccHhHHHHHHHh
Q 032386 7 GDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDH 40 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~ 40 (142)
+.+|||=+.....|+. +.|.|.|=..=|..+++-
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~ 223 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQV 223 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcC
Confidence 4689996655555544 669999999999998874
No 213
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=23.10 E-value=36 Score=16.07 Aligned_cols=12 Identities=25% Similarity=1.029 Sum_probs=8.3
Q ss_pred CCCCCCCCcccc
Q 032386 45 QACRCPLCRRRI 56 (142)
Q Consensus 45 ~~~~CP~Cr~~~ 56 (142)
.+..||.|.+.+
T Consensus 13 k~~~C~~C~k~F 24 (26)
T PF13465_consen 13 KPYKCPYCGKSF 24 (26)
T ss_dssp SSEEESSSSEEE
T ss_pred CCCCCCCCcCee
Confidence 346788887764
No 214
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=22.91 E-value=53 Score=24.82 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=9.4
Q ss_pred ccccccccccc
Q 032386 8 DVCSVCHGNFN 18 (142)
Q Consensus 8 ~~CpIC~~~~~ 18 (142)
+.||+|...+.
T Consensus 3 ~~CP~C~~~l~ 13 (272)
T PRK11088 3 YQCPLCHQPLT 13 (272)
T ss_pred ccCCCCCcchh
Confidence 68999999775
No 215
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=22.57 E-value=90 Score=17.15 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=14.5
Q ss_pred cccccccccccCc-eeecCCCcccHhHHHH
Q 032386 8 DVCSVCHGNFNVP-CQANCSHWFCGNCIML 36 (142)
Q Consensus 8 ~~CpIC~~~~~~p-v~~~CgH~fC~~Ci~~ 36 (142)
+.|..|...+... ....=|..||..|..+
T Consensus 27 f~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 27 FKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp SBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred cccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 4556666555433 2233445566666543
No 216
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=22.18 E-value=54 Score=17.56 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=10.0
Q ss_pred ccccccCceeec-CCCcccHh
Q 032386 13 CHGNFNVPCQAN-CSHWFCGN 32 (142)
Q Consensus 13 C~~~~~~pv~~~-CgH~fC~~ 32 (142)
|......|..=+ |+..||.+
T Consensus 6 C~~~~~~~~~C~~C~~~FC~~ 26 (43)
T PF01428_consen 6 CKKKDFLPFKCKHCGKSFCLK 26 (43)
T ss_dssp T--BCTSHEE-TTTS-EE-TT
T ss_pred CcCccCCCeECCCCCcccCcc
Confidence 666555666644 88888875
No 217
>PLN02248 cellulose synthase-like protein
Probab=21.95 E-value=62 Score=30.04 Aligned_cols=29 Identities=24% Similarity=0.717 Sum_probs=24.1
Q ss_pred cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 24 NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 24 ~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.|++..|.+|....+..+. .||-|+.+-.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 177 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGG-----ICPGCKEPYK 177 (1135)
T ss_pred cccchhHHhHhhhhhhcCC-----CCCCCccccc
Confidence 4889999999998877754 8999998754
No 218
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=21.80 E-value=73 Score=16.50 Aligned_cols=30 Identities=13% Similarity=0.295 Sum_probs=18.9
Q ss_pred ccccccccccccCceeecCCCcccHhHHHH
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIML 36 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~ 36 (142)
...|+.+.+....-.-..|+-.+|..|...
T Consensus 3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SSB-SSTTTSBEEEEETTTTEEEEHHHHHT
T ss_pred CccCccCCccceEEEecCCCCccCccCCCC
Confidence 346666665433333457889999999865
No 219
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=21.51 E-value=2.7e+02 Score=19.49 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=18.9
Q ss_pred ccccccccccccCceeecCCCcccH-hHHHH
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCG-NCIML 36 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~-~Ci~~ 36 (142)
..+|.||.+.-..=....|.--||. .|+..
T Consensus 5 t~tC~ic~e~~~KYKCpkC~vPYCSl~CfKi 35 (157)
T KOG2857|consen 5 TTTCVICLESEIKYKCPKCSVPYCSLPCFKI 35 (157)
T ss_pred eeeehhhhcchhhccCCCCCCccccchhhhh
Confidence 4578899885533233468888887 55533
No 220
>PLN02195 cellulose synthase A
Probab=21.24 E-value=1.2e+02 Score=27.84 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=32.0
Q ss_pred cccccccccccc-----Ccee--ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFN-----VPCQ--ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...|.||-|... +|-+ -.|+---|..|. +|=++. |...||.|++.-.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~e---g~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKE---GRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhc---CCccCCccCCccc
Confidence 358999998653 2222 248889999999 443332 3458999997754
No 221
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=20.97 E-value=32 Score=15.22 Aligned_cols=9 Identities=33% Similarity=1.213 Sum_probs=4.0
Q ss_pred ccccccccc
Q 032386 10 CSVCHGNFN 18 (142)
Q Consensus 10 CpIC~~~~~ 18 (142)
|++|...|.
T Consensus 3 C~~C~~~f~ 11 (23)
T PF00096_consen 3 CPICGKSFS 11 (23)
T ss_dssp ETTTTEEES
T ss_pred CCCCCCccC
Confidence 444444443
No 222
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=20.88 E-value=77 Score=23.36 Aligned_cols=25 Identities=20% Similarity=0.573 Sum_probs=17.9
Q ss_pred cccCceeecCC----CcccHhHHHHHHHh
Q 032386 16 NFNVPCQANCS----HWFCGNCIMLVWDH 40 (142)
Q Consensus 16 ~~~~pv~~~Cg----H~fC~~Ci~~~~~~ 40 (142)
.+..|....|. |.||..++..|+..
T Consensus 150 ~f~~p~~~~C~~gHfHHyCs~HV~~WL~~ 178 (199)
T PF12132_consen 150 KFVKPSVDECEYGHFHHYCSQHVNSWLNN 178 (199)
T ss_pred cccCCCCCCCCCCCcChhhHHHHHHHHHH
Confidence 34455555555 78999999999875
No 223
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=20.83 E-value=81 Score=24.44 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=22.7
Q ss_pred ccccccccccCcee------e-c-CCCcccHhHHHHHHHhCCCCCCCCCC
Q 032386 9 VCSVCHGNFNVPCQ------A-N-CSHWFCGNCIMLVWDHGSTLQACRCP 50 (142)
Q Consensus 9 ~CpIC~~~~~~pv~------~-~-CgH~fC~~Ci~~~~~~~~~~~~~~CP 50 (142)
.|.||++.-...+- + + =|| .+|.++|..-++ ..||
T Consensus 32 fChiCfEl~iegvpks~llHtkSlRGH---rdCFEK~HlIan----Q~~p 74 (285)
T PF06937_consen 32 FCHICFELSIEGVPKSNLLHTKSLRGH---RDCFEKYHLIAN----QDCP 74 (285)
T ss_pred ecceeeccccccCccccccccccccch---HHHHHHHHHHHc----CCCC
Confidence 57788876543222 1 2 667 788999977665 2787
No 224
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=20.70 E-value=84 Score=25.14 Aligned_cols=39 Identities=26% Similarity=0.737 Sum_probs=19.6
Q ss_pred cccccccccC-cee--ecCCCcccHhHHHHHHHhCCCCCCCCCCCCc
Q 032386 10 CSVCHGNFNV-PCQ--ANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53 (142)
Q Consensus 10 CpIC~~~~~~-pv~--~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr 53 (142)
|=.|++-... +.. -.|.+.||..|=.=..+.- -.||-|.
T Consensus 333 Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesL-----h~CpgCe 374 (378)
T KOG2807|consen 333 CFACQGELLSSGRYRCESCKNVFCLDCDVFIHESL-----HNCPGCE 374 (378)
T ss_pred eeeeccccCCCCcEEchhccceeeccchHHHHhhh-----hcCCCcC
Confidence 6666543332 222 2477777777753322221 2577764
No 225
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=20.17 E-value=1.5e+02 Score=24.70 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=39.3
Q ss_pred ccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 9 VCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.|.|--+...+||.-+ -||.|=++=|++++.... ++|+=.++++
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G-----~DPIt~~pLs 46 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETG-----KDPITNEPLS 46 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHcC-----CCCCCCCcCC
Confidence 5889999999999976 999999999999999875 8999888877
No 226
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=20.07 E-value=56 Score=21.77 Aligned_cols=10 Identities=40% Similarity=1.212 Sum_probs=7.9
Q ss_pred eecCCCcccH
Q 032386 22 QANCSHWFCG 31 (142)
Q Consensus 22 ~~~CgH~fC~ 31 (142)
.-.|||.||.
T Consensus 26 kc~CGh~f~d 35 (112)
T PF08882_consen 26 KCDCGHEFCD 35 (112)
T ss_pred eccCCCeecC
Confidence 3469999996
Done!