Query 032386
Match_columns 142
No_of_seqs 141 out of 1866
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.7 9.4E-17 3.2E-21 99.7 5.6 53 1-57 2-54 (78)
2 2kr4_A Ubiquitin conjugation f 99.6 6.8E-16 2.3E-20 97.7 7.1 51 2-57 9-59 (85)
3 3ztg_A E3 ubiquitin-protein li 99.6 1.3E-15 4.5E-20 97.3 7.6 51 3-56 9-60 (92)
4 2yur_A Retinoblastoma-binding 99.6 5.4E-16 1.8E-20 95.5 5.2 52 2-56 10-62 (74)
5 2ecy_A TNF receptor-associated 99.6 3.5E-16 1.2E-20 94.2 4.2 52 2-57 10-61 (66)
6 2djb_A Polycomb group ring fin 99.6 9E-16 3.1E-20 94.0 6.0 52 2-58 10-62 (72)
7 2kre_A Ubiquitin conjugation f 99.6 6.7E-16 2.3E-20 100.6 3.9 50 3-57 25-74 (100)
8 3lrq_A E3 ubiquitin-protein li 99.6 1E-15 3.5E-20 99.6 4.6 49 5-57 20-69 (100)
9 2ysl_A Tripartite motif-contai 99.6 1.1E-15 3.9E-20 93.5 4.3 53 3-57 16-68 (73)
10 2ysj_A Tripartite motif-contai 99.6 2.9E-15 1E-19 89.3 5.7 48 3-52 16-63 (63)
11 2csy_A Zinc finger protein 183 99.6 1.7E-15 6E-20 94.6 4.9 48 5-57 13-60 (81)
12 4ayc_A E3 ubiquitin-protein li 99.6 5.6E-16 1.9E-20 106.3 2.7 48 6-58 52-99 (138)
13 1wgm_A Ubiquitin conjugation f 99.6 2.9E-15 9.8E-20 97.2 5.9 50 3-57 18-68 (98)
14 2d8t_A Dactylidin, ring finger 99.6 1E-15 3.6E-20 93.4 2.8 49 4-57 12-60 (71)
15 2egp_A Tripartite motif-contai 99.6 6.7E-16 2.3E-20 95.8 1.6 56 2-57 7-64 (79)
16 1jm7_A BRCA1, breast cancer ty 99.6 8.5E-15 2.9E-19 96.5 6.9 50 6-57 20-69 (112)
17 3ng2_A RNF4, snurf, ring finge 99.6 1.8E-15 6.2E-20 92.0 3.3 50 3-57 6-62 (71)
18 2ecv_A Tripartite motif-contai 99.5 5.3E-15 1.8E-19 92.7 5.4 56 2-57 14-70 (85)
19 2ecw_A Tripartite motif-contai 99.5 5.5E-15 1.9E-19 92.6 5.3 55 3-57 15-70 (85)
20 3fl2_A E3 ubiquitin-protein li 99.5 3E-15 1E-19 100.7 4.1 50 5-58 50-99 (124)
21 2ea6_A Ring finger protein 4; 99.5 3.8E-15 1.3E-19 90.0 3.7 50 3-57 11-67 (69)
22 1chc_A Equine herpes virus-1 r 99.5 8.9E-15 3.1E-19 88.3 5.1 53 5-62 3-56 (68)
23 2ct2_A Tripartite motif protei 99.5 1E-14 3.5E-19 92.1 5.3 53 3-57 11-67 (88)
24 2ecm_A Ring finger and CHY zin 99.5 1.1E-14 3.7E-19 84.3 4.5 50 3-57 1-54 (55)
25 2y43_A E3 ubiquitin-protein li 99.5 1.3E-14 4.4E-19 93.9 5.2 48 6-58 21-69 (99)
26 2kiz_A E3 ubiquitin-protein li 99.5 2E-14 6.7E-19 87.1 5.6 53 5-62 12-67 (69)
27 2yu4_A E3 SUMO-protein ligase 99.5 1.4E-14 4.8E-19 93.2 5.2 53 3-55 3-59 (94)
28 2ckl_A Polycomb group ring fin 99.5 7.3E-15 2.5E-19 96.6 3.7 49 5-58 13-62 (108)
29 2ecj_A Tripartite motif-contai 99.5 1.4E-14 4.6E-19 84.7 4.4 49 2-52 10-58 (58)
30 3l11_A E3 ubiquitin-protein li 99.5 1.2E-15 4.2E-20 101.3 -0.1 50 5-58 13-62 (115)
31 1g25_A CDK-activating kinase a 99.5 9.4E-15 3.2E-19 87.6 3.6 48 6-57 2-54 (65)
32 2xeu_A Ring finger protein 4; 99.5 7.3E-15 2.5E-19 87.4 3.0 47 6-57 2-55 (64)
33 1iym_A EL5; ring-H2 finger, ub 99.5 1.5E-14 5.1E-19 83.8 3.3 48 4-56 2-53 (55)
34 3hct_A TNF receptor-associated 99.5 2E-14 6.9E-19 95.9 4.3 52 3-58 14-65 (118)
35 2c2l_A CHIP, carboxy terminus 99.5 2.5E-14 8.5E-19 107.4 5.0 50 4-57 205-254 (281)
36 2ep4_A Ring finger protein 24; 99.5 5.4E-14 1.8E-18 86.2 5.4 52 4-60 12-66 (74)
37 1z6u_A NP95-like ring finger p 99.5 2.1E-14 7.1E-19 99.9 3.6 49 6-58 77-125 (150)
38 1x4j_A Ring finger protein 38; 99.4 4.6E-14 1.6E-18 86.9 3.9 48 5-57 21-71 (75)
39 2ect_A Ring finger protein 126 99.4 4.1E-14 1.4E-18 87.6 3.6 50 4-58 12-64 (78)
40 2f42_A STIP1 homology and U-bo 99.4 6.4E-14 2.2E-18 99.8 5.0 51 3-57 102-152 (179)
41 3knv_A TNF receptor-associated 99.4 1E-14 3.5E-19 100.4 0.7 51 3-57 27-77 (141)
42 1rmd_A RAG1; V(D)J recombinati 99.4 4.7E-14 1.6E-18 93.7 3.5 49 6-58 22-70 (116)
43 2ecn_A Ring finger protein 141 99.4 1.4E-14 4.6E-19 88.0 0.7 51 2-58 10-60 (70)
44 1v87_A Deltex protein 2; ring- 99.4 1.4E-13 4.9E-18 91.0 5.5 54 6-59 24-95 (114)
45 2l0b_A E3 ubiquitin-protein li 99.4 7.6E-14 2.6E-18 89.1 3.8 48 5-57 38-88 (91)
46 2ckl_B Ubiquitin ligase protei 99.4 7.1E-14 2.4E-18 98.3 3.0 48 6-57 53-101 (165)
47 4ap4_A E3 ubiquitin ligase RNF 99.4 7.3E-14 2.5E-18 94.2 2.8 49 4-57 4-59 (133)
48 1jm7_B BARD1, BRCA1-associated 99.4 1E-13 3.5E-18 92.4 3.3 46 5-57 20-66 (117)
49 1bor_A Transcription factor PM 99.4 4.8E-14 1.7E-18 82.3 1.2 46 4-57 3-48 (56)
50 1e4u_A Transcriptional repress 99.4 1.9E-13 6.5E-18 85.0 3.9 51 4-58 8-62 (78)
51 3hcs_A TNF receptor-associated 99.4 2E-13 6.8E-18 96.4 4.3 53 2-58 13-65 (170)
52 2vje_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 80.4 3.1 52 4-60 5-59 (64)
53 2vje_B MDM4 protein; proto-onc 99.3 6.6E-13 2.3E-17 79.3 2.8 52 4-60 4-58 (63)
54 2ecl_A Ring-box protein 2; RNF 99.3 1.1E-12 3.8E-17 82.0 3.6 48 5-57 13-75 (81)
55 4ic3_A E3 ubiquitin-protein li 99.3 3.5E-13 1.2E-17 82.9 1.2 46 6-60 23-69 (74)
56 3htk_C E3 SUMO-protein ligase 99.3 7.2E-13 2.5E-17 99.0 3.1 52 3-57 177-231 (267)
57 4ap4_A E3 ubiquitin ligase RNF 99.2 2.8E-12 9.7E-17 86.3 3.1 49 4-57 69-124 (133)
58 2ecg_A Baculoviral IAP repeat- 99.2 2.5E-12 8.6E-17 79.2 2.2 46 6-60 24-70 (75)
59 2y1n_A E3 ubiquitin-protein li 99.2 5.3E-12 1.8E-16 99.4 4.3 48 7-58 332-379 (389)
60 1wim_A KIAA0161 protein; ring 99.2 7.3E-12 2.5E-16 80.2 3.3 53 3-55 1-61 (94)
61 3dpl_R Ring-box protein 1; ubi 99.2 1.8E-11 6.1E-16 80.3 4.1 47 6-57 36-100 (106)
62 2yho_A E3 ubiquitin-protein li 99.1 8.5E-12 2.9E-16 77.7 1.0 48 6-62 17-65 (79)
63 2bay_A PRE-mRNA splicing facto 99.1 3.6E-11 1.2E-15 71.3 3.3 52 7-63 3-57 (61)
64 2ea5_A Cell growth regulator w 99.1 6.3E-11 2.2E-15 71.6 4.2 49 6-63 14-63 (68)
65 4a0k_B E3 ubiquitin-protein li 99.0 6.5E-11 2.2E-15 78.9 0.2 47 6-57 47-111 (117)
66 3t6p_A Baculoviral IAP repeat- 98.9 1.4E-10 4.8E-15 90.3 1.3 45 6-59 294-339 (345)
67 2d8s_A Cellular modulator of i 98.9 1.4E-09 4.7E-14 67.8 5.1 52 4-58 12-70 (80)
68 2ct0_A Non-SMC element 1 homol 98.7 2.4E-08 8.1E-13 61.2 4.8 51 5-58 13-64 (74)
69 3vk6_A E3 ubiquitin-protein li 98.4 1.5E-07 5.2E-12 60.2 3.5 46 9-58 3-49 (101)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.4 3.3E-07 1.1E-11 53.8 3.9 50 5-57 4-58 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 98.3 2.8E-07 9.5E-12 71.4 2.2 52 6-57 307-372 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 97.5 3.2E-05 1.1E-09 49.4 1.9 34 6-39 2-38 (101)
73 3nw0_A Non-structural maintena 97.0 0.00071 2.4E-08 49.9 4.7 49 7-58 180-229 (238)
74 3m62_A Ubiquitin conjugation f 97.0 0.00068 2.3E-08 58.7 4.5 51 2-57 886-937 (968)
75 2cs3_A Protein C14ORF4, MY039 95.9 0.0062 2.1E-07 37.2 2.9 47 6-52 14-64 (93)
76 2lri_C Autoimmune regulator; Z 92.3 0.082 2.8E-06 31.0 2.3 52 3-55 8-59 (66)
77 3i2d_A E3 SUMO-protein ligase 91.1 0.25 8.7E-06 38.5 4.5 47 8-57 250-299 (371)
78 4fo9_A E3 SUMO-protein ligase 90.6 0.3 1E-05 38.0 4.4 47 8-57 216-265 (360)
79 2ko5_A Ring finger protein Z; 90.4 0.063 2.1E-06 33.8 0.4 43 8-57 29-72 (99)
80 3mjh_B Early endosome antigen 88.1 0.11 3.7E-06 26.5 0.2 16 5-20 3-18 (34)
81 1wfk_A Zinc finger, FYVE domai 86.0 0.39 1.3E-05 29.6 2.0 34 3-36 5-42 (88)
82 2k16_A Transcription initiatio 85.8 0.27 9.1E-06 29.2 1.1 52 5-57 16-70 (75)
83 1wil_A KIAA1045 protein; ring 84.2 1.5 5.1E-05 26.9 3.9 57 2-60 10-80 (89)
84 3ql9_A Transcriptional regulat 83.6 1.9 6.4E-05 28.6 4.6 49 6-54 56-110 (129)
85 1vfy_A Phosphatidylinositol-3- 83.1 0.66 2.3E-05 27.4 2.0 29 7-35 11-43 (73)
86 2lbm_A Transcriptional regulat 82.9 3.2 0.00011 27.9 5.6 48 7-54 63-116 (142)
87 2l5u_A Chromodomain-helicase-D 82.1 0.59 2E-05 26.7 1.5 48 5-55 9-58 (61)
88 1z2q_A LM5-1; membrane protein 80.7 1 3.4E-05 27.4 2.3 31 6-36 20-54 (84)
89 2yw8_A RUN and FYVE domain-con 80.5 0.98 3.3E-05 27.3 2.2 29 8-36 20-52 (82)
90 1wen_A Inhibitor of growth fam 79.9 1.2 3.9E-05 26.3 2.3 47 5-55 14-65 (71)
91 2jne_A Hypothetical protein YF 79.5 0.041 1.4E-06 34.8 -4.4 45 8-62 33-77 (101)
92 1joc_A EEA1, early endosomal a 78.7 0.89 3E-05 29.9 1.7 29 8-36 70-102 (125)
93 1we9_A PHD finger family prote 78.6 0.14 4.9E-06 29.4 -2.0 52 4-55 3-58 (64)
94 1x4u_A Zinc finger, FYVE domai 77.2 1.3 4.4E-05 26.9 2.0 28 8-35 15-46 (84)
95 3ttc_A HYPF, transcriptional r 77.2 1.4 4.7E-05 37.0 2.7 53 4-56 14-99 (657)
96 4g9i_A Hydrogenase maturation 77.1 0.99 3.4E-05 38.5 1.9 56 4-59 103-191 (772)
97 1dvp_A HRS, hepatocyte growth 76.6 0.9 3.1E-05 32.5 1.3 31 6-36 160-194 (220)
98 1y02_A CARP2, FYVE-ring finger 76.6 1 3.4E-05 29.5 1.4 42 8-54 20-65 (120)
99 3o36_A Transcription intermedi 76.5 0.53 1.8E-05 32.8 0.0 51 5-56 2-52 (184)
100 1weu_A Inhibitor of growth fam 76.4 1.3 4.5E-05 27.5 1.9 46 6-55 35-85 (91)
101 3t7l_A Zinc finger FYVE domain 75.7 1.3 4.3E-05 27.3 1.7 29 8-36 21-53 (90)
102 1mm2_A MI2-beta; PHD, zinc fin 74.8 0.64 2.2E-05 26.5 0.1 49 6-55 8-56 (61)
103 3zyq_A Hepatocyte growth facto 73.3 1.5 5E-05 31.7 1.7 31 6-36 163-197 (226)
104 3u5n_A E3 ubiquitin-protein li 73.0 0.57 1.9E-05 33.3 -0.5 50 5-55 5-54 (207)
105 3vth_A Hydrogenase maturation 72.5 1.7 5.8E-05 37.0 2.2 54 4-57 108-194 (761)
106 1weo_A Cellulose synthase, cat 71.3 8.8 0.0003 23.7 4.6 47 7-57 16-69 (93)
107 3c6w_A P28ING5, inhibitor of g 69.9 0.71 2.4E-05 26.2 -0.5 47 4-54 6-57 (59)
108 2lv2_A Insulinoma-associated p 68.4 5.8 0.0002 23.8 3.4 42 5-57 26-67 (85)
109 2yql_A PHD finger protein 21A; 68.0 0.31 1.1E-05 27.3 -2.3 49 5-54 7-55 (56)
110 3a1b_A DNA (cytosine-5)-methyl 67.5 2.9 0.0001 28.6 2.1 47 8-54 80-133 (159)
111 2pv0_B DNA (cytosine-5)-methyl 67.3 2.7 9.4E-05 32.9 2.2 49 7-55 93-148 (386)
112 2vnf_A ING 4, P29ING4, inhibit 66.5 0.91 3.1E-05 25.8 -0.5 45 6-54 9-58 (60)
113 1xwh_A Autoimmune regulator; P 66.0 0.44 1.5E-05 27.6 -2.0 51 4-55 5-55 (66)
114 1f62_A Transcription factor WS 65.8 2.3 7.7E-05 23.0 1.1 45 9-54 2-49 (51)
115 3lqh_A Histone-lysine N-methyl 64.4 2.2 7.6E-05 29.9 1.0 49 7-55 2-63 (183)
116 2gmg_A Hypothetical protein PF 64.2 4 0.00014 26.0 2.1 27 19-55 67-93 (105)
117 1m3v_A FLIN4, fusion of the LI 64.1 4.2 0.00014 26.0 2.3 45 8-57 33-80 (122)
118 2d8v_A Zinc finger FYVE domain 63.8 4.4 0.00015 23.6 2.1 34 5-39 6-40 (67)
119 2ro1_A Transcription intermedi 63.2 1.5 5.2E-05 30.7 0.0 48 7-55 2-49 (189)
120 2g6q_A Inhibitor of growth pro 62.6 1.2 4.2E-05 25.5 -0.5 46 5-54 9-59 (62)
121 2puy_A PHD finger protein 21A; 61.8 0.63 2.2E-05 26.4 -1.8 49 6-55 4-52 (60)
122 2xqn_T Testin, TESS; metal-bin 61.1 4.6 0.00016 25.8 2.1 43 8-57 31-74 (126)
123 2ri7_A Nucleosome-remodeling f 60.7 1.2 4.1E-05 30.5 -0.9 51 5-56 6-60 (174)
124 2o35_A Hypothetical protein DU 59.6 4.2 0.00014 25.7 1.6 14 28-41 42-55 (105)
125 3fyb_A Protein of unknown func 59.4 4.3 0.00015 25.6 1.6 14 28-41 41-54 (104)
126 2jmo_A Parkin; IBR, E3 ligase, 58.9 0.68 2.3E-05 27.9 -2.1 16 24-39 55-70 (80)
127 1zbd_B Rabphilin-3A; G protein 58.5 3.4 0.00012 27.4 1.1 50 5-55 53-107 (134)
128 2lce_A B-cell lymphoma 6 prote 57.7 13 0.00044 20.7 3.5 42 5-57 15-56 (74)
129 1fp0_A KAP-1 corepressor; PHD 56.5 2.5 8.6E-05 26.0 0.2 50 5-55 23-72 (88)
130 2rgt_A Fusion of LIM/homeobox 56.1 13 0.00046 25.0 3.9 44 7-57 33-76 (169)
131 1z60_A TFIIH basal transcripti 56.1 7 0.00024 22.2 2.0 39 9-52 17-58 (59)
132 2jrp_A Putative cytoplasmic pr 55.3 0.25 8.6E-06 30.2 -4.5 42 8-59 3-44 (81)
133 2zet_C Melanophilin; complex, 53.3 5.8 0.0002 26.9 1.6 47 5-55 66-117 (153)
134 1wep_A PHF8; structural genomi 52.3 12 0.0004 22.1 2.7 48 8-56 13-64 (79)
135 3o70_A PHD finger protein 13; 51.9 2.8 9.5E-05 24.4 -0.2 47 5-54 17-66 (68)
136 3c5k_A HD6, histone deacetylas 51.5 7.1 0.00024 24.9 1.7 26 7-32 24-49 (109)
137 2vpb_A Hpygo1, pygopus homolog 51.4 9 0.00031 21.9 2.0 31 4-34 5-40 (65)
138 2lv9_A Histone-lysine N-methyl 51.3 8 0.00027 24.0 1.9 44 8-54 29-75 (98)
139 1bbo_A Human enhancer-binding 50.6 18 0.0006 18.7 3.1 39 8-57 2-40 (57)
140 1wd2_A Ariadne-1 protein homol 50.5 1.4 4.9E-05 25.0 -1.6 34 7-40 6-47 (60)
141 2xjy_A Rhombotin-2; oncoprotei 50.2 12 0.0004 23.9 2.7 47 6-57 28-77 (131)
142 2jmi_A Protein YNG1, ING1 homo 50.2 3.2 0.00011 25.7 -0.1 47 5-55 24-76 (90)
143 3mpx_A FYVE, rhogef and PH dom 50.1 3.4 0.00012 32.1 0.0 32 7-38 375-410 (434)
144 2dmd_A Zinc finger protein 64, 50.0 21 0.00073 20.6 3.7 17 3-19 4-20 (96)
145 2adr_A ADR1; transcription reg 49.7 18 0.00062 18.9 3.1 39 8-57 3-41 (60)
146 1rut_X Flinc4, fusion protein 49.6 5.4 0.00018 27.5 1.0 45 8-57 33-80 (188)
147 1wew_A DNA-binding family prot 49.5 3.3 0.00011 24.6 -0.1 49 6-55 15-72 (78)
148 3uk3_C Zinc finger protein 217 48.5 9.7 0.00033 19.8 1.8 40 7-57 4-43 (57)
149 2jvx_A NF-kappa-B essential mo 48.2 5.4 0.00019 19.1 0.6 12 8-19 4-15 (28)
150 2eps_A POZ-, at HOOK-, and zin 48.0 28 0.00095 17.9 3.8 39 8-57 13-52 (54)
151 2ku7_A MLL1 PHD3-CYP33 RRM chi 47.3 16 0.00055 23.1 3.0 32 24-55 7-44 (140)
152 2ysm_A Myeloid/lymphoid or mix 47.0 5.7 0.0002 25.0 0.7 49 4-53 4-55 (111)
153 1wys_A Riken cDNA 2310008M20 p 46.4 16 0.00054 21.7 2.6 32 1-32 8-42 (75)
154 1x6e_A Zinc finger protein 24; 45.7 15 0.00051 20.3 2.4 41 6-57 13-53 (72)
155 2jtn_A LIM domain-binding prot 45.5 12 0.0004 25.6 2.2 43 8-57 88-130 (182)
156 1x61_A Thyroid receptor intera 45.3 38 0.0013 18.8 4.2 32 8-39 34-66 (72)
157 2e6r_A Jumonji/ARID domain-con 44.6 1.2 4.2E-05 27.5 -2.7 50 5-55 14-66 (92)
158 2epr_A POZ-, at HOOK-, and zin 44.2 30 0.001 17.2 3.5 36 7-53 12-47 (48)
159 2epq_A POZ-, at HOOK-, and zin 44.1 28 0.00097 16.9 3.3 13 7-19 10-22 (45)
160 2a20_A Regulating synaptic mem 43.8 12 0.00042 21.2 1.7 17 4-20 6-23 (62)
161 2yt9_A Zinc finger-containing 43.1 22 0.00075 20.5 3.0 15 5-19 5-19 (95)
162 2ffw_A Midline-1; B-BOX, ring 43.0 19 0.00064 21.2 2.6 32 5-36 28-62 (78)
163 2cot_A Zinc finger protein 435 42.9 26 0.00091 19.4 3.3 41 6-57 17-57 (77)
164 1x5w_A Zinc finger protein 64, 42.6 23 0.00079 19.2 2.9 41 6-57 8-48 (70)
165 3vhs_A ATPase wrnip1; zinc fin 42.5 5.6 0.00019 18.6 0.1 14 5-18 4-17 (29)
166 4gzn_C ZFP-57, zinc finger pro 42.2 13 0.00046 20.5 1.7 41 6-57 3-43 (60)
167 2eoe_A Zinc finger protein 347 41.7 31 0.0011 16.7 3.6 13 7-19 12-24 (46)
168 6rxn_A Rubredoxin; electron tr 41.2 7.7 0.00026 20.8 0.5 11 4-14 27-37 (46)
169 2d8x_A Protein pinch; LIM doma 40.9 15 0.00051 20.6 1.9 40 6-58 4-43 (70)
170 2eml_A Zinc finger protein 28 40.7 33 0.0011 16.7 3.4 12 8-19 13-24 (46)
171 2eov_A Zinc finger protein 484 40.7 33 0.0011 16.6 3.8 13 7-19 12-24 (46)
172 2ee8_A Protein ODD-skipped-rel 40.5 42 0.0014 19.7 4.1 14 6-19 16-29 (106)
173 2em5_A ZFP-95, zinc finger pro 39.4 35 0.0012 16.6 3.4 12 8-19 13-24 (46)
174 2ct7_A Ring finger protein 31; 39.4 13 0.00046 22.2 1.5 28 10-37 28-61 (86)
175 2ytn_A Zinc finger protein 347 39.2 35 0.0012 16.6 4.0 13 7-19 12-24 (46)
176 2ep2_A Zinc finger protein 484 39.1 35 0.0012 16.6 3.8 12 8-19 13-24 (46)
177 2eq4_A Zinc finger protein 224 39.1 35 0.0012 16.5 4.4 13 7-19 12-24 (46)
178 2el4_A Zinc finger protein 268 38.8 35 0.0012 16.5 3.3 12 8-19 13-24 (46)
179 2ytd_A Zinc finger protein 473 38.7 36 0.0012 16.5 3.2 12 8-19 13-24 (46)
180 2eop_A Zinc finger protein 268 38.2 36 0.0012 16.5 4.2 12 8-19 13-24 (46)
181 2ysp_A Zinc finger protein 224 37.9 37 0.0013 16.5 3.3 12 8-19 13-24 (46)
182 2cup_A Skeletal muscle LIM-pro 37.7 6.1 0.00021 24.0 -0.2 43 8-57 34-77 (101)
183 3v43_A Histone acetyltransfera 37.6 6.4 0.00022 25.0 -0.2 45 9-54 63-111 (112)
184 2emm_A ZFP-95, zinc finger pro 37.6 37 0.0013 16.4 3.0 12 8-19 13-24 (46)
185 2epz_A Zinc finger protein 28 37.5 38 0.0013 16.4 4.0 12 8-19 13-24 (46)
186 2ytk_A Zinc finger protein 347 36.8 37 0.0013 16.5 2.9 12 8-19 13-24 (46)
187 2eoq_A Zinc finger protein 224 36.5 39 0.0013 16.4 4.4 12 8-19 13-24 (46)
188 2ytr_A Zinc finger protein 347 36.5 39 0.0013 16.3 4.0 12 8-19 13-24 (46)
189 2ene_A Zinc finger protein 347 36.5 39 0.0013 16.4 3.5 12 8-19 13-24 (46)
190 2emy_A Zinc finger protein 268 36.3 39 0.0013 16.4 3.0 12 8-19 13-24 (46)
191 1e8j_A Rubredoxin; iron-sulfur 36.1 14 0.00047 20.2 1.1 11 5-15 34-44 (52)
192 2em9_A Zinc finger protein 224 35.9 40 0.0014 16.3 3.0 11 8-18 13-23 (46)
193 2ema_A Zinc finger protein 347 35.6 38 0.0013 16.4 2.8 11 8-18 13-23 (46)
194 2dlq_A GLI-kruppel family memb 35.5 49 0.0017 19.8 3.9 15 5-19 5-19 (124)
195 1x62_A C-terminal LIM domain p 35.4 26 0.00089 20.1 2.4 39 6-57 14-52 (79)
196 2cur_A Skeletal muscle LIM-pro 35.2 22 0.00075 19.7 2.0 39 6-57 4-42 (69)
197 2eme_A Zinc finger protein 473 35.0 42 0.0014 16.2 3.4 12 8-19 13-24 (46)
198 2ely_A Zinc finger protein 224 34.8 43 0.0015 16.3 3.3 12 8-19 13-24 (46)
199 2emk_A Zinc finger protein 28 34.8 43 0.0015 16.3 3.7 13 7-19 12-24 (46)
200 2ytm_A Zinc finger protein 28 34.7 43 0.0015 16.3 3.1 13 7-19 12-24 (46)
201 2en1_A Zinc finger protein 224 34.6 42 0.0014 16.3 2.9 12 8-19 13-24 (46)
202 2em0_A Zinc finger protein 224 34.6 43 0.0015 16.2 3.4 12 8-19 13-24 (46)
203 2drp_A Protein (tramtrack DNA- 34.4 34 0.0012 18.2 2.7 40 7-57 10-51 (66)
204 3shb_A E3 ubiquitin-protein li 33.9 7 0.00024 23.3 -0.4 31 24-54 46-76 (77)
205 2en8_A Zinc finger protein 224 33.9 44 0.0015 16.1 3.6 12 8-19 13-24 (46)
206 3asl_A E3 ubiquitin-protein li 33.8 8.1 0.00028 22.4 -0.1 46 9-54 20-68 (70)
207 2em7_A Zinc finger protein 224 33.6 45 0.0015 16.1 3.0 11 8-18 13-23 (46)
208 2ytq_A Zinc finger protein 268 33.5 45 0.0015 16.2 4.3 12 8-19 13-24 (46)
209 2elz_A Zinc finger protein 224 33.5 45 0.0015 16.2 3.4 12 8-19 13-24 (46)
210 1wff_A Riken cDNA 2810002D23 p 33.4 35 0.0012 20.7 2.7 26 7-32 25-52 (85)
211 2eq0_A Zinc finger protein 347 32.6 47 0.0016 16.1 3.7 11 8-18 13-23 (46)
212 2d8z_A Four and A half LIM dom 32.6 36 0.0012 18.8 2.7 38 7-57 5-42 (70)
213 2jr6_A UPF0434 protein NMA0874 32.5 22 0.00074 20.6 1.6 13 6-18 7-19 (68)
214 2ep0_A Zinc finger protein 28 32.5 47 0.0016 16.0 3.4 12 8-19 13-24 (46)
215 2kn9_A Rubredoxin; metalloprot 32.4 17 0.00057 22.0 1.1 9 47-55 61-69 (81)
216 2emf_A Zinc finger protein 484 32.3 48 0.0016 16.1 3.3 11 8-18 13-23 (46)
217 2epw_A Zinc finger protein 268 31.7 48 0.0016 15.9 3.6 12 8-19 13-24 (46)
218 2en6_A Zinc finger protein 268 31.7 46 0.0016 16.1 2.8 12 8-19 13-24 (46)
219 2enc_A Zinc finger protein 224 31.7 49 0.0017 16.0 3.7 12 8-19 13-24 (46)
220 1x64_A Alpha-actinin-2 associa 31.4 38 0.0013 19.9 2.7 38 7-57 25-62 (89)
221 2el6_A Zinc finger protein 268 30.9 51 0.0017 15.9 3.4 11 8-18 13-23 (46)
222 4gne_A Histone-lysine N-methyl 30.9 16 0.00054 23.2 0.8 47 4-54 12-61 (107)
223 2e6s_A E3 ubiquitin-protein li 30.7 11 0.00036 22.4 0.0 46 9-54 28-76 (77)
224 1f2i_G Fusion of N-terminal 17 30.7 34 0.0012 18.6 2.3 13 45-57 48-60 (73)
225 2v3b_B Rubredoxin 2, rubredoxi 30.5 14 0.00047 20.5 0.5 10 5-14 34-43 (55)
226 1yk4_A Rubredoxin, RD; electro 30.2 15 0.0005 20.2 0.5 11 5-15 33-43 (52)
227 1wfh_A Zinc finger (AN1-like) 30.2 48 0.0016 19.0 2.8 28 5-32 13-41 (64)
228 1x4l_A Skeletal muscle LIM-pro 30.1 35 0.0012 19.0 2.3 39 6-57 4-46 (72)
229 2epx_A Zinc finger protein 28 30.0 53 0.0018 15.8 4.1 12 8-19 13-24 (47)
230 2em8_A Zinc finger protein 224 29.9 43 0.0015 16.3 2.4 12 8-19 13-24 (46)
231 2emp_A Zinc finger protein 347 29.9 41 0.0014 16.3 2.4 12 8-19 13-24 (46)
232 4rxn_A Rubredoxin; electron tr 29.8 15 0.00051 20.3 0.5 10 5-14 34-43 (54)
233 2kgg_A Histone demethylase jar 29.6 6.2 0.00021 21.4 -1.1 44 9-53 4-52 (52)
234 2uzg_A Ubiquitin carboxyl-term 29.6 15 0.00051 22.7 0.6 27 6-32 24-53 (97)
235 2emh_A Zinc finger protein 484 29.3 41 0.0014 16.3 2.3 12 8-19 13-24 (46)
236 2kpi_A Uncharacterized protein 29.0 32 0.0011 19.0 1.8 13 6-18 9-21 (56)
237 2cor_A Pinch protein; LIM doma 28.9 41 0.0014 19.3 2.5 37 8-57 16-52 (79)
238 2g45_A Ubiquitin carboxyl-term 28.8 21 0.00073 23.3 1.3 28 5-32 32-59 (129)
239 2js4_A UPF0434 protein BB2007; 28.7 25 0.00086 20.4 1.4 13 6-18 7-19 (70)
240 2dar_A PDZ and LIM domain prot 28.7 22 0.00074 21.1 1.2 37 8-57 26-62 (90)
241 1llm_C Chimera of ZIF23-GCN4; 28.5 27 0.00091 20.0 1.6 40 7-57 3-42 (88)
242 2eoo_A ZFP-95, zinc finger pro 28.3 46 0.0016 16.1 2.4 12 8-19 13-24 (46)
243 1dx8_A Rubredoxin; electron tr 28.2 16 0.00056 21.3 0.5 9 47-55 41-49 (70)
244 2ytt_A Zinc finger protein 473 27.9 37 0.0012 16.5 1.9 12 8-19 13-24 (46)
245 2ytj_A Zinc finger protein 484 27.8 58 0.002 15.7 3.8 12 8-19 13-24 (46)
246 1erd_A Pheromone ER-2; NMR {Eu 27.8 13 0.00045 18.5 0.1 14 23-36 10-23 (40)
247 2yso_A ZFP-95, zinc finger pro 27.7 58 0.002 15.6 3.0 12 8-19 13-24 (46)
248 2ytg_A ZFP-95, zinc finger pro 27.6 31 0.0011 16.8 1.6 12 8-19 13-24 (46)
249 1b8t_A Protein (CRP1); LIM dom 26.3 52 0.0018 22.4 3.0 43 8-57 143-186 (192)
250 3ask_A E3 ubiquitin-protein li 26.3 10 0.00035 27.4 -0.7 45 9-54 176-224 (226)
251 2emx_A Zinc finger protein 268 26.2 61 0.0021 15.4 3.1 12 8-19 11-22 (44)
252 1nyp_A Pinch protein; LIM doma 26.0 29 0.00099 19.0 1.4 37 8-57 6-42 (66)
253 1wyh_A SLIM 2, skeletal muscle 25.8 35 0.0012 18.9 1.8 37 8-57 6-44 (72)
254 1iml_A CRIP, cysteine rich int 25.7 47 0.0016 18.7 2.3 42 7-55 27-70 (76)
255 1wg2_A Zinc finger (AN1-like) 25.2 50 0.0017 18.9 2.2 28 5-32 13-41 (64)
256 2hf1_A Tetraacyldisaccharide-1 25.0 25 0.00084 20.4 0.9 12 7-18 8-19 (68)
257 1wee_A PHD finger family prote 24.4 6.1 0.00021 22.9 -1.9 46 8-55 17-66 (72)
258 1wig_A KIAA1808 protein; LIM d 24.4 55 0.0019 18.4 2.4 37 8-57 6-42 (73)
259 2csh_A Zinc finger protein 297 24.3 48 0.0016 19.6 2.3 11 46-56 65-75 (110)
260 2yu8_A Zinc finger protein 347 24.0 39 0.0013 16.4 1.6 12 8-19 13-24 (46)
261 2ct1_A Transcriptional repress 23.5 68 0.0023 17.6 2.7 41 6-57 14-56 (77)
262 2kmk_A Zinc finger protein GFI 23.3 31 0.0011 19.1 1.2 12 8-19 2-13 (82)
263 2jny_A Uncharacterized BCR; st 22.9 29 0.00098 20.0 0.9 13 6-18 9-21 (67)
264 1g47_A Pinch protein; LIM doma 22.8 55 0.0019 18.3 2.2 40 5-57 9-50 (77)
265 1l8d_A DNA double-strand break 22.6 24 0.00084 21.9 0.6 10 48-57 49-58 (112)
266 1x6a_A LIMK-2, LIM domain kina 22.5 36 0.0012 19.5 1.4 36 9-57 17-52 (81)
267 2ctd_A Zinc finger protein 512 22.3 84 0.0029 18.5 3.1 14 44-57 60-73 (96)
268 2cu8_A Cysteine-rich protein 2 22.2 53 0.0018 18.5 2.1 38 7-57 9-47 (76)
269 1x68_A FHL5 protein; four-and- 22.1 41 0.0014 19.0 1.5 37 8-57 6-46 (76)
270 2e72_A POGO transposable eleme 22.0 31 0.0011 18.6 0.9 15 44-58 10-24 (49)
271 1lko_A Rubrerythrin all-iron(I 21.8 29 0.001 24.0 1.0 24 22-56 158-181 (191)
272 1x63_A Skeletal muscle LIM-pro 21.2 53 0.0018 18.7 2.0 37 8-57 16-54 (82)
273 2yt5_A Metal-response element- 21.2 34 0.0012 19.0 1.0 53 3-55 2-61 (66)
274 2fiy_A Protein FDHE homolog; F 21.0 8.2 0.00028 29.2 -2.2 46 5-55 180-231 (309)
275 1a1h_A QGSR zinc finger peptid 20.9 49 0.0017 18.6 1.7 11 46-56 62-72 (90)
276 2cuq_A Four and A half LIM dom 20.3 1.1E+02 0.0038 17.1 3.3 10 26-35 61-70 (80)
277 1v6g_A Actin binding LIM prote 20.1 39 0.0013 19.4 1.2 36 9-57 17-52 (81)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.66 E-value=9.4e-17 Score=99.71 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=46.9
Q ss_pred CCCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 1 MEGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 1 ~~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++..++++.||||++.+.+|+.++|||+||..||.+|+..+. ..||+||+.+.
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~----~~CP~C~~~~~ 54 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGH----KTCPKSQETLL 54 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTC----CBCTTTCCBCS
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCc----CCCCCCcCCCC
Confidence 356788999999999999999999999999999999997532 48999999865
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.63 E-value=6.8e-16 Score=97.70 Aligned_cols=51 Identities=12% Similarity=0.049 Sum_probs=46.1
Q ss_pred CCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...++++.||||++.+.+||+++|||+||..||.+||.... +||+|++.+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~-----~cP~~~~~l~ 59 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-----TDPFNRQMLT 59 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCS-----BCTTTCCBCC
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCC-----CCCCCcCCCC
Confidence 45678899999999999999999999999999999998643 8999999865
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=97.28 Aligned_cols=51 Identities=20% Similarity=0.513 Sum_probs=45.0
Q ss_pred CCCCccccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
..++++.||||++.+.+|+.++ |||+||..||.+||.... ...||+||+.+
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---EHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT---TCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC---CCcCcCCCCcC
Confidence 4567899999999999999999 999999999999998642 35899999875
No 4
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.61 E-value=5.4e-16 Score=95.53 Aligned_cols=52 Identities=19% Similarity=0.521 Sum_probs=45.3
Q ss_pred CCCCCccccccccccccCceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
+..++++.|+||++.+.+|+.++ |||+||..||.+|++... ...||+||+.+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~~~CP~Cr~~~ 62 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---EHTCPTCHQND 62 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS---SSCCSSSCCSS
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC---CCcCCCCCCcC
Confidence 45567799999999999999999 999999999999998742 34899999964
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.5e-16 Score=94.23 Aligned_cols=52 Identities=25% Similarity=0.611 Sum_probs=45.1
Q ss_pred CCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+..+++..|+||++.+.+|+.++|||.||..|+.+|++.. ...||+||+.+.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS----SPKCTACQESIV 61 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS----SCCCTTTCCCCC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC----cCCCCCCCcCCC
Confidence 4567789999999999999999999999999999999633 248999999854
No 6
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9e-16 Score=93.96 Aligned_cols=52 Identities=27% Similarity=0.588 Sum_probs=45.8
Q ss_pred CCCCCccccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+..+++..|+||++.+.+|+.+ +|||.||..||.+|++... .||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~~ 62 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN-----RCPKCNIVVHQ 62 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCS-----SCTTTCCCCCS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCC-----cCCCcCcccCc
Confidence 4456778999999999999997 9999999999999998754 89999998764
No 7
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.59 E-value=6.7e-16 Score=100.58 Aligned_cols=50 Identities=12% Similarity=0.041 Sum_probs=45.0
Q ss_pred CCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..++++.||||++.+.+||.++|||+||..||.+||... .+||.|++++.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-----~~cP~~~~~l~ 74 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS-----PTDPFNRQTLT 74 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSC-----SBCSSSCCBCC
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcC-----CCCCCCCCCCC
Confidence 457789999999999999999999999999999999853 38999999865
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=99.57 Aligned_cols=49 Identities=22% Similarity=0.484 Sum_probs=44.0
Q ss_pred CCccccccccccccCcee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+++.|+||++.+.+|+. ++|||.||..||.+|+.... ..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~----~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR----AQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC----SBCTTTCCBCC
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc----CCCCCCCCcCC
Confidence 356899999999999999 99999999999999999863 38999999875
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=93.49 Aligned_cols=53 Identities=25% Similarity=0.667 Sum_probs=44.9
Q ss_pred CCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..+++..|+||++.+.+|+.++|||.||..|+.+|++.. .+...||+||+.+.
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS--CGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSS--CSCCCCSSSCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcC--CCCCCCCCCCCcCC
Confidence 456778999999999999999999999999999998632 23458999999854
No 10
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=89.27 Aligned_cols=48 Identities=27% Similarity=0.700 Sum_probs=41.4
Q ss_pred CCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
..+++..|+||++.+.+|+.++|||+||..||.+|++.. .+...||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETS--CGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHC--SSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcC--CCCCcCcCC
Confidence 456778999999999999999999999999999999863 123589998
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=94.65 Aligned_cols=48 Identities=25% Similarity=0.711 Sum_probs=43.5
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+++.|+||++.+.+|+.++|||.||..|+.+|+.... .||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP-----RCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCS-----BCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCC-----cCCCcCcccc
Confidence 45679999999999999999999999999999998754 8999999865
No 12
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.57 E-value=5.6e-16 Score=106.27 Aligned_cols=48 Identities=31% Similarity=0.693 Sum_probs=43.1
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+++.|+||++.+.+|+.++|||+||..||.+|+.... .||+||+++..
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI-----ECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCS-----BCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCC-----cCCCCCCcCCC
Confidence 4578999999999999999999999999999988754 89999998653
No 13
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.57 E-value=2.9e-15 Score=97.25 Aligned_cols=50 Identities=12% Similarity=-0.098 Sum_probs=45.2
Q ss_pred CCCCccccccccccccCceeecCC-CcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCS-HWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..++++.||||++++++||+++|| |+||..||.+||... ..||+|++++.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~-----~~cP~~~~~l~ 68 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-----QTDPFNRSPLT 68 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-----CBCTTTCSBCC
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC-----CCCCCCCCCCC
Confidence 457889999999999999999999 999999999999864 38999999865
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1e-15 Score=93.42 Aligned_cols=49 Identities=31% Similarity=0.623 Sum_probs=43.8
Q ss_pred CCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..++..|+||++.+.+|+.++|||.||..||.+|+.... .||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~ 60 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-----RCALCRQEIP 60 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSS-----BCSSSCCBCC
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCC-----cCcCcCchhC
Confidence 456689999999999999999999999999999887653 8999999876
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.56 E-value=6.7e-16 Score=95.83 Aligned_cols=56 Identities=20% Similarity=0.489 Sum_probs=46.7
Q ss_pred CCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCC--CCCCCCCCCCccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS--TLQACRCPLCRRRIT 57 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--~~~~~~CP~Cr~~~~ 57 (142)
+..+++..|+||++.+.+|+.++|||+||..|+.+|++... ..+...||+||+.+.
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 44567899999999999999999999999999999987631 122458999999876
No 16
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.55 E-value=8.5e-15 Score=96.52 Aligned_cols=50 Identities=28% Similarity=0.734 Sum_probs=43.9
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++..|+||++.+.+|+.++|||.||..|+.+|+.... +...||+||..+.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--GPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS--SSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC--CCCCCcCCCCcCC
Confidence 4578999999999999999999999999999998652 3358999999876
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.55 E-value=1.8e-15 Score=92.03 Aligned_cols=50 Identities=26% Similarity=0.783 Sum_probs=44.7
Q ss_pred CCCCccccccccccccCc-------eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.++++..|+||++.+.+| +.++|||.||..|+.+|++... .||+||+.+.
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 62 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKIN 62 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-----BCTTTCCBCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-----CCCCCCCccC
Confidence 456779999999999887 8899999999999999998864 8999999866
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.3e-15 Score=92.65 Aligned_cols=56 Identities=21% Similarity=0.539 Sum_probs=46.3
Q ss_pred CCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCC-CCCCCCCCCCccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS-TLQACRCPLCRRRIT 57 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-~~~~~~CP~Cr~~~~ 57 (142)
+...++..|+||++.+.+|+.++|||.||..|+.+|+..+. ..+...||.||+.+.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34567789999999999999999999999999999998720 012358999999877
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=5.5e-15 Score=92.57 Aligned_cols=55 Identities=29% Similarity=0.640 Sum_probs=46.4
Q ss_pred CCCCccccccccccccCceeecCCCcccHhHHHHHHHhCC-CCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGS-TLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-~~~~~~CP~Cr~~~~ 57 (142)
...+++.|+||++.+.+|+.++|||.||..|+.+|+.... ..+...||.||+.+.
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3456789999999999999999999999999999998842 122458999999876
No 20
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.54 E-value=3e-15 Score=100.72 Aligned_cols=50 Identities=22% Similarity=0.493 Sum_probs=43.5
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
++++.||||++.+.+|+.++|||+||..||.+|+.... ..||+||+.+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQV----FSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC----CBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCc----CCCCCCCccCCC
Confidence 34578999999999999999999999999999998432 489999998653
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.8e-15 Score=89.97 Aligned_cols=50 Identities=26% Similarity=0.783 Sum_probs=43.5
Q ss_pred CCCCccccccccccccCc-------eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...++..|+||++.+.+| +.++|||.||..||.+|+.... .||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-----SCTTTCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-----CCCCCCCccC
Confidence 345678999999999887 8899999999999999998854 8999998754
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.53 E-value=8.9e-15 Score=88.30 Aligned_cols=53 Identities=23% Similarity=0.563 Sum_probs=45.5
Q ss_pred CCccccccccccccCc-eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccccccC
Q 032386 5 PCGDVCSVCHGNFNVP-CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~~ 62 (142)
+++..|+||++.+.+| +.++|||.||..|+.+|++... .||.||+.+..+...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-----TCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC-----STTTTCCCCCCEECC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC-----cCcCCChhhHhhhhc
Confidence 5678999999999986 7789999999999999998764 899999998755443
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=92.15 Aligned_cols=53 Identities=23% Similarity=0.585 Sum_probs=45.5
Q ss_pred CCCCccccccccccccC----ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNV----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...++..|+||++.+.+ |+.++|||.||..|+.+|++... +...||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI--NGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS--SCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC--CCcCCCCCCCccc
Confidence 44667899999999998 99999999999999999998752 2358999999865
No 24
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.52 E-value=1.1e-14 Score=84.34 Aligned_cols=50 Identities=24% Similarity=0.623 Sum_probs=42.9
Q ss_pred CCCCccccccccccccC----ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNV----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+..++..|+||++.+.+ ++.++|||.||..|+.+|++... .||+||+.+.
T Consensus 1 g~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 54 (55)
T 2ecm_A 1 GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY-----RCPLCSGPSS 54 (55)
T ss_dssp CCSCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC-----CCTTSCCSSC
T ss_pred CCCCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC-----cCCCCCCcCC
Confidence 34677899999999865 77889999999999999999864 8999998753
No 25
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=93.92 Aligned_cols=48 Identities=29% Similarity=0.632 Sum_probs=42.6
Q ss_pred CccccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 6 CGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+++.|+||++.+.+|+.+ +|||+||..|+.+|+.... .||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT-----QCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-----BCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCC-----CCCCCCCcCCh
Confidence 457999999999999998 8999999999999998653 89999998653
No 26
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=87.07 Aligned_cols=53 Identities=23% Similarity=0.564 Sum_probs=43.9
Q ss_pred CCcccccccccccc---CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccccccC
Q 032386 5 PCGDVCSVCHGNFN---VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (142)
Q Consensus 5 ~~~~~CpIC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~~ 62 (142)
.++..|+||++.+. .++.++|||.||..|+.+|+.... .||+||+.+....+.
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-----KCPICRVDIEAQLPS 67 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-----BCTTTCSBSCSCCCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-----CCcCcCccccCcCCC
Confidence 45579999999874 457789999999999999998865 799999987765443
No 27
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=93.19 Aligned_cols=53 Identities=17% Similarity=0.484 Sum_probs=44.4
Q ss_pred CCCCccccccccccccCceeec-CCCcccHhHHHHHHHhC-CCCCCCCCCC--Cccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQAN-CSHWFCGNCIMLVWDHG-STLQACRCPL--CRRR 55 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~-~~~~~~~CP~--Cr~~ 55 (142)
.+++++.||||++.|.+||.++ |||+||..||.+||... ...+...||+ |+..
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4578899999999999999996 99999999999999874 1123468999 9854
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.51 E-value=7.3e-15 Score=96.58 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=44.2
Q ss_pred CCccccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
++++.|+||++.+.+|+.+ +|||+||..||.+|+..+. .||.||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-----~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSK-----YCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCS-----BCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCC-----cCcCCCccccc
Confidence 5678999999999999998 9999999999999998753 89999998764
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.4e-14 Score=84.73 Aligned_cols=49 Identities=33% Similarity=0.776 Sum_probs=41.2
Q ss_pred CCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
+...++..|+||++.+.+|+.++|||.||..||.+|+... .+...||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL--ERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS--CCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc--CCCCCCCCC
Confidence 4456778999999999999999999999999999997652 123589998
No 30
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.51 E-value=1.2e-15 Score=101.33 Aligned_cols=50 Identities=28% Similarity=0.680 Sum_probs=43.7
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
.+++.|+||++.+.+|+.++|||+||..||.+|+..+. ..||.||+.+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKAS----LCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTT----SBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCc----CCCCCCCcccCc
Confidence 45689999999999999999999999999999986532 489999998763
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.50 E-value=9.4e-15 Score=87.60 Aligned_cols=48 Identities=25% Similarity=0.716 Sum_probs=41.4
Q ss_pred Cccccccccc-cccCc----eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHG-NFNVP----CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~-~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++..||||++ .+.+| +.++|||+||..|+.+|+.++. ..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA----GNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS----SSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCC----CcCCCCCCccc
Confidence 5789999999 88888 4689999999999999987643 48999999865
No 32
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.50 E-value=7.3e-15 Score=87.42 Aligned_cols=47 Identities=26% Similarity=0.784 Sum_probs=42.0
Q ss_pred CccccccccccccCc-------eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++..|+||++.+.+| +.++|||.||..|+.+|++... .||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS-----BCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC-----CCCCCCccCC
Confidence 568999999999887 7899999999999999998854 8999999865
No 33
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.48 E-value=1.5e-14 Score=83.79 Aligned_cols=48 Identities=29% Similarity=0.615 Sum_probs=41.4
Q ss_pred CCCccccccccccccC---ceeec-CCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 4 PPCGDVCSVCHGNFNV---PCQAN-CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
.+++..|+||++.+.+ ++.++ |||.||..|+.+|++... +||+||+.+
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~-----~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-----TCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-----SCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC-----cCcCCCCEe
Confidence 4677899999999877 67776 999999999999987654 899999875
No 34
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.48 E-value=2e-14 Score=95.95 Aligned_cols=52 Identities=21% Similarity=0.497 Sum_probs=45.6
Q ss_pred CCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
..++++.|+||++.+.+|+.++|||+||..||.+|+..+. ..||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC----CCCCCCCCCcCH
Confidence 4567789999999999999999999999999999998754 289999998653
No 35
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.48 E-value=2.5e-14 Score=107.44 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=44.9
Q ss_pred CCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.++++.||||++.+.+||+++|||+||..||.+||..+. ..||+|+.+++
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~----~~cP~~~~~~~ 254 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG----HFNPVTRSPLT 254 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC----SSCTTTCCCCC
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC----CCCcCCCCCCc
Confidence 467899999999999999999999999999999998754 25999999865
No 36
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=5.4e-14 Score=86.23 Aligned_cols=52 Identities=25% Similarity=0.586 Sum_probs=43.7
Q ss_pred CCCccccccccccccCceee---cCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~ 60 (142)
..++..|+||++.+..+..+ +|||.||..||.+|++... .||+||+.+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-----~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-----VCPLCNMPVLQLA 66 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-----BCTTTCCBCSSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-----cCCCcCccccccc
Confidence 45678999999999876554 9999999999999998864 8999999877543
No 37
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.47 E-value=2.1e-14 Score=99.87 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=43.5
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+++.|+||++.+.+|+.++|||+||..||.+|+.... ..||+||..+..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQV----FSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC----CBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCC----CcCCCCCccCCC
Confidence 5679999999999999999999999999999998643 479999998653
No 38
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=4.6e-14 Score=86.88 Aligned_cols=48 Identities=25% Similarity=0.584 Sum_probs=41.9
Q ss_pred CCccccccccccccCc---eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVP---CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.++..|+||++.+..+ +.++|||.||..||.+|++... .||+||+.+.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-----~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-----TCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-----SCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-----cCcCcCCcCC
Confidence 4567999999999876 7789999999999999998864 8999998754
No 39
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=4.1e-14 Score=87.64 Aligned_cols=50 Identities=30% Similarity=0.725 Sum_probs=41.9
Q ss_pred CCCccccccccccccCc---eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 4 PPCGDVCSVCHGNFNVP---CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
..++..|+||++.+..+ +.++|||.||..||.+|++... .||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-----~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD-----SCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC-----SCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC-----cCcCcCCccCC
Confidence 34568999999998765 4569999999999999997654 89999998773
No 40
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.45 E-value=6.4e-14 Score=99.83 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=45.7
Q ss_pred CCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..++++.||||.+++.+||+++|||+||..||..||.... ..||+|+.++.
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~----~tcP~t~~~l~ 152 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG----HFDPVTRSPLT 152 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC----SBCTTTCCBCC
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC----CCCCCCcCCCC
Confidence 4578899999999999999999999999999999998743 26999999865
No 41
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.44 E-value=1e-14 Score=100.44 Aligned_cols=51 Identities=25% Similarity=0.633 Sum_probs=44.5
Q ss_pred CCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..++++.|+||++.+.+|++++|||+||..||.+|++.+. ..||+||..+.
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~----~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP----QNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSC----EECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCC----CCCCCCCCccc
Confidence 3467789999999999999999999999999999997643 48999999753
No 42
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.44 E-value=4.7e-14 Score=93.75 Aligned_cols=49 Identities=27% Similarity=0.616 Sum_probs=43.4
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+++.||||++.+.+|+.++|||+||..||.+|+.... ..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMG----SYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc----CcCCCCCCCCCH
Confidence 4579999999999999999999999999999998742 389999998663
No 43
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-14 Score=88.04 Aligned_cols=51 Identities=27% Similarity=0.565 Sum_probs=43.7
Q ss_pred CCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+...++..|+||++.+.+ +.++|||.||..|+.+|+... ..||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRH-----RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCC-----SSCHHHHHCTTC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCc-----CcCCCcCCcccC
Confidence 345667899999999999 999999999999999988754 389999998763
No 44
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.43 E-value=1.4e-13 Score=91.03 Aligned_cols=54 Identities=22% Similarity=0.518 Sum_probs=43.1
Q ss_pred CccccccccccccCce------------------eecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccccc
Q 032386 6 CGDVCSVCHGNFNVPC------------------QANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLL 59 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv------------------~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l 59 (142)
++..|+||++.+.++. .++|||.||..||.+|+..........||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4569999999997664 67899999999999999754322345899999987654
No 45
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.43 E-value=7.6e-14 Score=89.15 Aligned_cols=48 Identities=21% Similarity=0.650 Sum_probs=41.3
Q ss_pred CCccccccccccccC---ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNV---PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.++..|+||++.+.. ++.++|||.||..||.+|++... .||+||+.+.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-----~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-----TCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-----BCTTTCCBSS
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-----cCcCcCccCC
Confidence 456789999998876 77899999999999999997654 8999998754
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.41 E-value=7.1e-14 Score=98.28 Aligned_cols=48 Identities=27% Similarity=0.823 Sum_probs=42.3
Q ss_pred CccccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+++.|+||++.+.+|+.+ +|||+||..||.+|+..+. ..||+||..+.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN----KECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTC----CBCTTTCCBCC
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCc----CCCCCCCCcCC
Confidence 456999999999999998 8999999999999998632 48999999874
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.41 E-value=7.3e-14 Score=94.16 Aligned_cols=49 Identities=24% Similarity=0.744 Sum_probs=43.9
Q ss_pred CCCccccccccccccCc-------eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..+++.|+||++.+.+| +.++|||.||..||.+|++.+. +||+||+.+.
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 59 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKIN 59 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-----BCTTTCCBCT
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-----CCCCCCCcCc
Confidence 35678999999999988 8999999999999999998764 8999999877
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=1e-13 Score=92.38 Aligned_cols=46 Identities=28% Similarity=0.590 Sum_probs=41.3
Q ss_pred CCccccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+++.||||++.+.+|+.+ +|||+||..||.+|+. ..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCc
Confidence 4568999999999999999 9999999999999986 28999999864
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.40 E-value=4.8e-14 Score=82.28 Aligned_cols=46 Identities=22% Similarity=0.545 Sum_probs=40.0
Q ss_pred CCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..+++.|+||++.+.+|+.++|||+||..|+.+| ...||+||+.+.
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~--------~~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS--------GMQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS--------SSSCSSCCSSSS
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHccC--------CCCCCcCCcEee
Confidence 4567899999999999999999999999999771 238999999865
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.39 E-value=1.9e-13 Score=85.05 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=41.1
Q ss_pred CCCcccccccccccc--Cceeec--CCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 4 PPCGDVCSVCHGNFN--VPCQAN--CSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~--~pv~~~--CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
.+++.+||||++.+. ++..++ |||.||..|+.++|... ...||.||+.+..
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~----~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE----NGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS----CSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC----CCCCCCCCCccCC
Confidence 356789999999874 455555 99999999999998653 2589999998773
No 51
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.39 E-value=2e-13 Score=96.37 Aligned_cols=53 Identities=21% Similarity=0.485 Sum_probs=46.4
Q ss_pred CCCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+..++++.||||++.+.+|+.++|||+||..|+.+|+..+. ..||+||..+..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC----CCCCCCccCcch
Confidence 45577899999999999999999999999999999998753 389999988653
No 52
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.34 E-value=4.2e-13 Score=80.40 Aligned_cols=52 Identities=23% Similarity=0.622 Sum_probs=44.4
Q ss_pred CCCccccccccccccCceee--cCCCc-ccHhHHHHHHHhCCCCCCCCCCCCcccccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQA--NCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~--~CgH~-fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~ 60 (142)
.+++..|+||++...+++.+ +|||. ||.+|+.+|++.+. .||+||+.+....
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-----~CPiCR~~i~~~i 59 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK-----PCPVCRQPIQMIV 59 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTC-----CCTTTCCCCCEEE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCC-----cCCCcCcchhceE
Confidence 34567999999999999987 99999 89999999987654 8999999877543
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.32 E-value=6.6e-13 Score=79.27 Aligned_cols=52 Identities=25% Similarity=0.526 Sum_probs=44.3
Q ss_pred CCCccccccccccccCceee--cCCCc-ccHhHHHHHHHhCCCCCCCCCCCCcccccccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQA--NCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~--~CgH~-fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~ 60 (142)
.+.+..|+||++...+++.+ +|||. ||.+|+.++++.+. .||+||+++....
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-----~CPiCR~~i~~~i 58 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA-----SCPICKKEIQLVI 58 (63)
T ss_dssp GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTC-----BCTTTCCBCCEEE
T ss_pred CCcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCC-----cCCCcCchhhceE
Confidence 34567999999999999888 99998 99999999887653 8999999987543
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.1e-12 Score=81.97 Aligned_cols=48 Identities=27% Similarity=0.598 Sum_probs=39.8
Q ss_pred CCccccccccccccC--------------ceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNV--------------PCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~--------------pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.++..|+||++.+.+ ++.+ +|||.|+..||.+|+.... +||+||+++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-----~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-----RCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-----BCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-----CCCCcCCCcc
Confidence 456789999998866 4455 5999999999999988764 8999999854
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.31 E-value=3.5e-13 Score=82.89 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=40.5
Q ss_pred CccccccccccccCceeecCCCc-ccHhHHHHHHHhCCCCCCCCCCCCcccccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~ 60 (142)
++..|+||++.+.+|+.++|||. ||..|+.+| . .||+||+.+....
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~-----~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----D-----KCPMCYTVITFKQ 69 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----S-----BCTTTCCBCSEEE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----c-----cCCCcCcCccCcE
Confidence 45789999999999999999999 999999886 2 8999999877543
No 56
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.30 E-value=7.2e-13 Score=99.03 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=44.5
Q ss_pred CCCCccccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCC--Cccccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPL--CRRRIT 57 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~--Cr~~~~ 57 (142)
+...++.||||++.|.+||+. .|||+||..||.+||..+ +...||+ |++.+.
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~---~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY---TTRDCPQAACSQVVS 231 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC---SCEECSGGGCSCEEC
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC---CCCCCCcccccCcCc
Confidence 445678999999999999985 899999999999999863 2358999 999765
No 57
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=2.8e-12 Score=86.27 Aligned_cols=49 Identities=24% Similarity=0.744 Sum_probs=43.5
Q ss_pred CCCccccccccccccCc-------eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 4 PPCGDVCSVCHGNFNVP-------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p-------v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+++..|+||++.+.++ +.++|||.||..|+.+|++... +||+||+.+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-----~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-----TCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-----BCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-----CCCCCCCcCC
Confidence 35678999999999876 8899999999999999998865 8999999865
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.5e-12 Score=79.15 Aligned_cols=46 Identities=26% Similarity=0.598 Sum_probs=39.2
Q ss_pred CccccccccccccCceeecCCCc-ccHhHHHHHHHhCCCCCCCCCCCCcccccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLI 60 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~ 60 (142)
++..|+||++.+.+|+.++|||. ||..|+.+. ..||+||+.+....
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~---------~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------DKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC---------SBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC---------CCCccCCceecCcE
Confidence 35689999999999999999999 999999542 38999999877543
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.23 E-value=5.3e-12 Score=99.35 Aligned_cols=48 Identities=25% Similarity=0.571 Sum_probs=42.2
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+..|+||++.+.+|+.++|||.||..|+..|+.... ..||+||+.+..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~----~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG----QGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTC----SBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCC----CCCCCCCCccCC
Confidence 479999999999999999999999999999987422 389999998773
No 60
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=7.3e-12 Score=80.22 Aligned_cols=53 Identities=25% Similarity=0.584 Sum_probs=42.8
Q ss_pred CCCCccccccccccccCceee---cCCCcccHhHHHHHHHhC---CCCCCCCCCC--Cccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHG---STLQACRCPL--CRRR 55 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~---~~~~~~~CP~--Cr~~ 55 (142)
|..+.++|+||++.+..|..+ +|||.||..|+.+||..+ .......||. |+..
T Consensus 1 g~~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 1 GSSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456789999999999887664 699999999999999863 1123468999 9876
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.17 E-value=1.8e-11 Score=80.32 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=39.5
Q ss_pred CccccccccccccCc------------------eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVP------------------CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~p------------------v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++..|+||++.+.++ +.++|+|.|+..||.+|+.... +||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-----~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-----VCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-----BCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC-----cCcCCCCcce
Confidence 567899999998765 3478999999999999988754 8999999754
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.13 E-value=8.5e-12 Score=77.67 Aligned_cols=48 Identities=25% Similarity=0.556 Sum_probs=41.2
Q ss_pred CccccccccccccCceeecCCCc-ccHhHHHHHHHhCCCCCCCCCCCCcccccccccC
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~~ 62 (142)
++..|+||++...+++.++|||. ||..|+..++ .||+||+.+......
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~---------~CP~Cr~~i~~~~~i 65 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ---------SCPVCRSRVEHVQHV 65 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS---------BCTTTCCBCCEEEEC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC---------cCCCCCchhhCeEEE
Confidence 45789999999999999999999 9999997652 799999998854443
No 63
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.12 E-value=3.6e-11 Score=71.27 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=44.7
Q ss_pred ccccccccccccCceee-cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc--ccccCC
Q 032386 7 GDVCSVCHGNFNVPCQA-NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT--LLIPND 63 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~--~l~~~~ 63 (142)
.+.|||+.+.+.+||.+ ++||+|+.+||.+|++... .||+.++++. .+.|+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~-----~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-----NDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-----BCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC-----CCcCCcCCCChhhcEECc
Confidence 47899999999999999 8999999999999998754 6999999886 555543
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6.3e-11 Score=71.63 Aligned_cols=49 Identities=22% Similarity=0.558 Sum_probs=41.3
Q ss_pred CccccccccccccCceeecCCCc-ccHhHHHHHHHhCCCCCCCCCCCCcccccccccCC
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPND 63 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~~~ 63 (142)
++..|+||++...+++.+||||. ||..|+... ..||+||+.+.......
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF---------QQCPMCRQFVQESFALS 63 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC---------SSCTTTCCCCCCEECCC
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC---------CCCCCCCcchhceEEee
Confidence 45799999999999999999999 999999741 28999999988654443
No 65
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.97 E-value=6.5e-11 Score=78.86 Aligned_cols=47 Identities=28% Similarity=0.534 Sum_probs=1.0
Q ss_pred CccccccccccccCce------------------eecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPC------------------QANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv------------------~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
++..|+||++.+.++. .++|+|.|+..||.+|+.... .||+||+.+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-----~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-----VCPLDNREWE 111 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-----cCCCCCCeee
Confidence 4578999999987642 248999999999999998754 8999998743
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.94 E-value=1.4e-10 Score=90.32 Aligned_cols=45 Identities=27% Similarity=0.601 Sum_probs=40.1
Q ss_pred CccccccccccccCceeecCCCc-ccHhHHHHHHHhCCCCCCCCCCCCccccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHW-FCGNCIMLVWDHGSTLQACRCPLCRRRITLL 59 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l 59 (142)
++..|+||++.+.+|+.++|||. ||..|+..| . .||+||..+...
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~-----~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----R-----KCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----S-----BCTTTCCBCCEE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----C-----cCCCCCCCccCe
Confidence 46789999999999999999999 999999876 2 899999987754
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=67.77 Aligned_cols=52 Identities=23% Similarity=0.639 Sum_probs=42.4
Q ss_pred CCCcccccccccccc--CceeecCC-----CcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 4 PPCGDVCSVCHGNFN--VPCQANCS-----HWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+.++..|.||++.+. +++.++|+ |.|+..||.+|+..+. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD---TRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---CSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---CCCCCCCCCeeec
Confidence 456689999998763 67888996 9999999999998753 2489999998763
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=2.4e-08 Score=61.18 Aligned_cols=51 Identities=18% Similarity=0.455 Sum_probs=40.4
Q ss_pred CCccccccccccccCcee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
+.-..|.||.+.+..... ..|+|.|...||.+|++... ...||.||+....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~---~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA---EPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS---SCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC---CCCCCCCcCcCCC
Confidence 444799999999875544 37999999999999997652 2489999987654
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.42 E-value=1.5e-07 Score=60.23 Aligned_cols=46 Identities=26% Similarity=0.590 Sum_probs=37.2
Q ss_pred cccccccccc-CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 9 VCSVCHGNFN-VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 9 ~CpIC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
-|++|.-.+. ....+||+|.||.+|+..|..++. ..||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~----k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD----KMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC----CBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC----CCCcCcCCeeee
Confidence 4788877554 466789999999999999887654 389999999884
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.38 E-value=3.3e-07 Score=53.79 Aligned_cols=50 Identities=14% Similarity=0.300 Sum_probs=39.7
Q ss_pred CCccccccccccccCceeecCC--C---cccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCS--H---WFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~Cg--H---~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+++..|.||++...++..+||. | .|...|+.+|+..+. ...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR---NTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---CSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC---CCccCCCCCeee
Confidence 4567899999987777778855 4 899999999998642 358999998753
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.26 E-value=2.8e-07 Score=71.36 Aligned_cols=52 Identities=17% Similarity=0.383 Sum_probs=38.1
Q ss_pred CccccccccccccC----ce----eecCCCcccHhHHHHHHHhCCCC----C--CCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNV----PC----QANCSHWFCGNCIMLVWDHGSTL----Q--ACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~----pv----~~~CgH~fC~~Ci~~~~~~~~~~----~--~~~CP~Cr~~~~ 57 (142)
....|+||++.+.+ |. ..+|||.|...|+.+|++..+.+ + .-.||.||++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34589999998765 21 13699999999999999863211 0 126999999876
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.53 E-value=3.2e-05 Score=49.39 Aligned_cols=34 Identities=15% Similarity=0.509 Sum_probs=28.9
Q ss_pred Ccccccccccc-ccCcee--ecCCCcccHhHHHHHHH
Q 032386 6 CGDVCSVCHGN-FNVPCQ--ANCSHWFCGNCIMLVWD 39 (142)
Q Consensus 6 ~~~~CpIC~~~-~~~pv~--~~CgH~fC~~Ci~~~~~ 39 (142)
++..|+||.+. +.+|+. +.|+|+||..|+..++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 46899999975 778888 89999999999998544
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.04 E-value=0.00071 Score=49.91 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=38.8
Q ss_pred ccccccccccccCcee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 7 GDVCSVCHGNFNVPCQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
-..|.||.++...... .+|+|.|...|+..|++... ...||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~---~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA---EPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS---SCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC---CCCCCCCCCCCCC
Confidence 4689999998886554 34999999999999987632 3589999987443
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.96 E-value=0.00068 Score=58.69 Aligned_cols=51 Identities=14% Similarity=-0.032 Sum_probs=45.5
Q ss_pred CCCCCccccccccccccCceeecCC-CcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQANCS-HWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..+|+++.|||-.+++.+||.++-| ++|=+..|.+|+...+ +||.=|++++
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~-----tdP~Tr~~L~ 937 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-----TDPFNRMPLK 937 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC-----BCTTTCCBCC
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC-----CCCCCCCCCC
Confidence 3578899999999999999999998 6999999999997643 8999999876
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=95.88 E-value=0.0062 Score=37.24 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=34.9
Q ss_pred CccccccccccccCceeec----CCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 6 CGDVCSVCHGNFNVPCQAN----CSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~----CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
..+.|.+|.+.+.+-.... =.|.||..|-+.+++........-||.=
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 3479999999998765544 4699999999999886543444556643
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.32 E-value=0.082 Score=31.02 Aligned_cols=52 Identities=21% Similarity=0.358 Sum_probs=36.1
Q ss_pred CCCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 3 GPPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.|..+..|.||.+.-..-.--.|...|...|+..-+...+ .+...||.|...
T Consensus 8 ~~~~~~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~ 59 (66)
T 2lri_C 8 NLAPGARCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTCCCTTTSCCTTCEECSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTC
T ss_pred CCCCCCCcCCCCCCCeEEECCCCCCceecccCCCccCcCC-CCCEECccccCC
Confidence 3566678999987432111125999999999976665554 456899999754
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.06 E-value=0.25 Score=38.49 Aligned_cols=47 Identities=21% Similarity=0.559 Sum_probs=35.4
Q ss_pred cccccccccccCceee-cCCCcccHh--HHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQA-NCSHWFCGN--CIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~-~CgH~fC~~--Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.||+-...+..|+.- .|.|.-|.+ -+.+...+ .+...||+|.+.+.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~---~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ---IPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH---SCCCBCTTTCCBCC
T ss_pred ecCCCccccccccCcCCcCCCcceECHHHHHHHhhc---CCceeCCCCCcccC
Confidence 6899999999999996 499996654 34444444 34579999998764
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=90.57 E-value=0.3 Score=37.95 Aligned_cols=47 Identities=21% Similarity=0.639 Sum_probs=35.3
Q ss_pred cccccccccccCceee-cCCCcccH--hHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQA-NCSHWFCG--NCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~-~CgH~fC~--~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.||+-...+..|+.. .|.|.-|. .-+.+...+ .+...||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~---~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEK---KPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHH---SCCCBCTTTCSBCC
T ss_pred eeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhh---CCCeECCCCCcccC
Confidence 5799999999999996 59999555 444444444 34579999998875
No 79
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.45 E-value=0.063 Score=33.75 Aligned_cols=43 Identities=28% Similarity=0.838 Sum_probs=32.6
Q ss_pred cccccccccccCceeecCC-CcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCS-HWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.-|--|.-..+ -.+.|. |-.|..|+...+..+. .||.|..++.
T Consensus 29 ~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~Sd-----rCpIC~~pLP 72 (99)
T 2ko5_A 29 QFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSN-----RCPICKMPLP 72 (99)
T ss_dssp CCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSS-----EETTTTEECC
T ss_pred ccChhhccccC--CeeeecchhhHHHHHHHHHhhcc-----CCcccCCcCC
Confidence 35666665444 345665 9999999999887765 8999999987
No 80
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=88.06 E-value=0.11 Score=26.46 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=9.7
Q ss_pred CCccccccccccccCc
Q 032386 5 PCGDVCSVCHGNFNVP 20 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~p 20 (142)
.+++.||+|+..+..+
T Consensus 3 ~EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSA 18 (34)
T ss_dssp SEEEECTTTCCEESSH
T ss_pred CcccCCcHHHHHcCCH
Confidence 3456677776666554
No 81
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=86.05 E-value=0.39 Score=29.64 Aligned_cols=34 Identities=24% Similarity=0.562 Sum_probs=25.0
Q ss_pred CCCCccccccccccccCce----eecCCCcccHhHHHH
Q 032386 3 GPPCGDVCSVCHGNFNVPC----QANCSHWFCGNCIML 36 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~pv----~~~CgH~fC~~Ci~~ 36 (142)
++.+...|.+|...|..-. --.||++||..|...
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3455678999999876422 246999999999754
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=85.77 E-value=0.27 Score=29.21 Aligned_cols=52 Identities=19% Similarity=0.467 Sum_probs=33.3
Q ss_pred CCccccccccccccC-ceee--cCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNV-PCQA--NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~-pv~~--~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.++..|++|...-.. .++. .|..+|...|+..-....+ .+...||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~-~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPE-EMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCS-SSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCC-CCCEEChhccCchh
Confidence 344679999875433 2222 5889999999954322221 35678999987643
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.17 E-value=1.5 Score=26.94 Aligned_cols=57 Identities=23% Similarity=0.444 Sum_probs=37.2
Q ss_pred CCCCCccccccccccccCceeec---CCCcccHhHHHHH--HH---------hCCCCCCCCCCCCcccccccc
Q 032386 2 EGPPCGDVCSVCHGNFNVPCQAN---CSHWFCGNCIMLV--WD---------HGSTLQACRCPLCRRRITLLI 60 (142)
Q Consensus 2 ~~~~~~~~CpIC~~~~~~pv~~~---CgH~fC~~Ci~~~--~~---------~~~~~~~~~CP~Cr~~~~~l~ 60 (142)
|.++.|..|.||...-.. ...+ |+..|...|+.+. .+ .+......+||.| ..++.|.
T Consensus 10 e~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C-enL~lLL 80 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC-DNINLLL 80 (89)
T ss_dssp CCCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT-CCCCSSS
T ss_pred cCCCCCcccCcccccccc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc-chhhhhc
Confidence 566788999999854322 3333 8899999999884 11 1112345799999 4555443
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=83.55 E-value=1.9 Score=28.57 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=32.7
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHH-----HHhC-CCCCCCCCCCCcc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLV-----WDHG-STLQACRCPLCRR 54 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~-----~~~~-~~~~~~~CP~Cr~ 54 (142)
.+..|.+|-+--.-..--.|-..||.+|+..- +... ...+...|+.|+.
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 34569999875432223369999999999864 2221 1256789999964
No 85
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=83.06 E-value=0.66 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.674 Sum_probs=21.8
Q ss_pred ccccccccccccCcee----ecCCCcccHhHHH
Q 032386 7 GDVCSVCHGNFNVPCQ----ANCSHWFCGNCIM 35 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~----~~CgH~fC~~Ci~ 35 (142)
+..|.+|...|..-.. -.||..||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 4689999998764221 3699999999974
No 86
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=82.90 E-value=3.2 Score=27.88 Aligned_cols=48 Identities=23% Similarity=0.535 Sum_probs=32.4
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHH-----hC-CCCCCCCCCCCcc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWD-----HG-STLQACRCPLCRR 54 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~-----~~-~~~~~~~CP~Cr~ 54 (142)
+..|.+|.+--..-.--.|...||..|+..-+. .. ...+...||.|+.
T Consensus 63 ~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 467888887544322337999999999986542 10 1256789999974
No 87
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.13 E-value=0.59 Score=26.68 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=32.6
Q ss_pred CCccccccccccccCcee--ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 5 PCGDVCSVCHGNFNVPCQ--ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~--~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
..+..|.+|.+.- .+. -.|...|...|+..-+...+ .+...||.|...
T Consensus 9 ~~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~p~l~~~p-~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGG--EIILCDTCPRAYHMVCLDPDMEKAP-EGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCS--SEEECSSSSCEEEHHHHCTTCCSCC-CSSCCCTTGGGG
T ss_pred CCCCCCccCCCCC--cEEECCCCChhhhhhccCCCCCCCC-CCceECcccccc
Confidence 3457899998742 122 25888999999976444333 466899999753
No 88
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=80.71 E-value=1 Score=27.38 Aligned_cols=31 Identities=26% Similarity=0.598 Sum_probs=22.8
Q ss_pred CccccccccccccCce----eecCCCcccHhHHHH
Q 032386 6 CGDVCSVCHGNFNVPC----QANCSHWFCGNCIML 36 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv----~~~CgH~fC~~Ci~~ 36 (142)
+...|.+|...|..-. --.||+.||..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3468999999876422 136999999999754
No 89
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=80.49 E-value=0.98 Score=27.30 Aligned_cols=29 Identities=31% Similarity=0.808 Sum_probs=22.1
Q ss_pred cccccccccccCce----eecCCCcccHhHHHH
Q 032386 8 DVCSVCHGNFNVPC----QANCSHWFCGNCIML 36 (142)
Q Consensus 8 ~~CpIC~~~~~~pv----~~~CgH~fC~~Ci~~ 36 (142)
..|.+|...|..-. --.||..||..|...
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 58999999886322 136999999999854
No 90
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=79.93 E-value=1.2 Score=26.34 Aligned_cols=47 Identities=26% Similarity=0.530 Sum_probs=30.6
Q ss_pred CCccccccccccccCceee--c--CC-CcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 5 PCGDVCSVCHGNFNVPCQA--N--CS-HWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.+...| ||.+.-...++. + |. .+|...|+. +...+ .+...||.|+..
T Consensus 14 ~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg--l~~~p-~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTT--CSSCC-SSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCC--cCcCC-CCCEECCCCCcc
Confidence 344677 898854333332 3 66 699999996 34433 466899999764
No 91
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=79.45 E-value=0.041 Score=34.78 Aligned_cols=45 Identities=20% Similarity=0.461 Sum_probs=32.0
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccccccC
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLLIPN 62 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l~~~ 62 (142)
..||+|...+.- .=++.+|..|-..+...+ .||.|.+++..|..-
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~~a------~CPdC~q~LevLkAC 77 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEMKA------LCPDCHQPLQVLKAC 77 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEEEE------ECTTTCSBCEEEEET
T ss_pred ccCccCCCccee----cCCEEECccccchhhccc------cCcchhhHHHHHHHh
Confidence 689999987652 113455888887654443 799999998866544
No 92
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=78.73 E-value=0.89 Score=29.86 Aligned_cols=29 Identities=28% Similarity=0.738 Sum_probs=22.0
Q ss_pred cccccccccccCc----eeecCCCcccHhHHHH
Q 032386 8 DVCSVCHGNFNVP----CQANCSHWFCGNCIML 36 (142)
Q Consensus 8 ~~CpIC~~~~~~p----v~~~CgH~fC~~Ci~~ 36 (142)
..|.+|...|..- .--.||++||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 5799999987642 1236999999999754
No 93
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=78.64 E-value=0.14 Score=29.44 Aligned_cols=52 Identities=19% Similarity=0.671 Sum_probs=32.5
Q ss_pred CCCccccccccccccC-c--ee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 4 PPCGDVCSVCHGNFNV-P--CQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~-p--v~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.+++..|++|.....+ . +. -.|..||...|+.---......+...||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3456789999876532 1 22 258899999998432211111345789999754
No 94
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.22 E-value=1.3 Score=26.86 Aligned_cols=28 Identities=32% Similarity=0.793 Sum_probs=21.2
Q ss_pred cccccccccccCce----eecCCCcccHhHHH
Q 032386 8 DVCSVCHGNFNVPC----QANCSHWFCGNCIM 35 (142)
Q Consensus 8 ~~CpIC~~~~~~pv----~~~CgH~fC~~Ci~ 35 (142)
..|.+|...|..-. --.||.+||..|..
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 58999999875322 13699999999964
No 95
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=77.18 E-value=1.4 Score=36.97 Aligned_cols=53 Identities=26% Similarity=0.570 Sum_probs=39.5
Q ss_pred CCCccccccccccccCc----------eeecCCCcc--------------------cHhHHHHHHHhCCC---CCCCCCC
Q 032386 4 PPCGDVCSVCHGNFNVP----------CQANCSHWF--------------------CGNCIMLVWDHGST---LQACRCP 50 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p----------v~~~CgH~f--------------------C~~Ci~~~~~~~~~---~~~~~CP 50 (142)
|+|-..|+-|+..+.+| -.|+||..| |..|-.+|-.-..- -++..||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 67778999999877654 236788877 99999999664320 2356899
Q ss_pred CCcccc
Q 032386 51 LCRRRI 56 (142)
Q Consensus 51 ~Cr~~~ 56 (142)
.|.-.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 998776
No 96
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=77.14 E-value=0.99 Score=38.48 Aligned_cols=56 Identities=27% Similarity=0.547 Sum_probs=40.8
Q ss_pred CCCccccccccccccCc----------eeecCCCcc--------------------cHhHHHHHHHhCCC---CCCCCCC
Q 032386 4 PPCGDVCSVCHGNFNVP----------CQANCSHWF--------------------CGNCIMLVWDHGST---LQACRCP 50 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p----------v~~~CgH~f--------------------C~~Ci~~~~~~~~~---~~~~~CP 50 (142)
|+|-..|+-|+..+.+| -.|+||..| |..|-.+|-.-..- -++..||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 67778999999877654 236788877 99999998653320 2345899
Q ss_pred CCccccccc
Q 032386 51 LCRRRITLL 59 (142)
Q Consensus 51 ~Cr~~~~~l 59 (142)
.|.-.+...
T Consensus 183 ~CGP~l~l~ 191 (772)
T 4g9i_A 183 VCGPSYRLY 191 (772)
T ss_dssp TTSCCEEEE
T ss_pred cCCceEEEE
Confidence 998776543
No 97
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.60 E-value=0.9 Score=32.55 Aligned_cols=31 Identities=35% Similarity=0.829 Sum_probs=22.7
Q ss_pred CccccccccccccCc----eeecCCCcccHhHHHH
Q 032386 6 CGDVCSVCHGNFNVP----CQANCSHWFCGNCIML 36 (142)
Q Consensus 6 ~~~~CpIC~~~~~~p----v~~~CgH~fC~~Ci~~ 36 (142)
++..|.+|...|..- ..-.||+.||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 357999999887632 1236999999998754
No 98
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=76.55 E-value=1 Score=29.51 Aligned_cols=42 Identities=29% Similarity=0.645 Sum_probs=26.9
Q ss_pred cccccccccccCc----eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 8 DVCSVCHGNFNVP----CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 8 ~~CpIC~~~~~~p----v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
..|..|...|..- .--+||..||..|....... ...|-.|..
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~-----vRVC~~C~~ 65 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG-----PRLCLLCQR 65 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC---------CCEEHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC-----ceECHHHHH
Confidence 5799999987642 22469999999997654322 125666654
No 99
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.46 E-value=0.53 Score=32.78 Aligned_cols=51 Identities=24% Similarity=0.505 Sum_probs=33.5
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
+.+..|.+|.+-=..-..-.|...|+..|+..-+...+ .+...||.|+..-
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p-~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFP-SGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCSS
T ss_pred CCCCccccCCCCCeeeecCCCCcccCccccCCCCCCCC-CCCEECccccCcc
Confidence 45677999986533212235888899999765444433 4568999998653
No 100
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.44 E-value=1.3 Score=27.50 Aligned_cols=46 Identities=26% Similarity=0.548 Sum_probs=29.8
Q ss_pred CccccccccccccCceee--c--CC-CcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 6 CGDVCSVCHGNFNVPCQA--N--CS-HWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
+...| ||.+.-...++. + |. .+|...|+. +...+ .+...||.|+..
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVg--l~~~p-~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTT--CSSCC-CSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCC--cCcCC-CCCEECcCccCc
Confidence 34567 998854332221 3 66 699999996 33333 466899999764
No 101
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.66 E-value=1.3 Score=27.33 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=21.8
Q ss_pred cccccccccccCc----eeecCCCcccHhHHHH
Q 032386 8 DVCSVCHGNFNVP----CQANCSHWFCGNCIML 36 (142)
Q Consensus 8 ~~CpIC~~~~~~p----v~~~CgH~fC~~Ci~~ 36 (142)
..|.+|...|..- .--.||++||..|...
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 5799999877632 2246999999999754
No 102
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=74.76 E-value=0.64 Score=26.53 Aligned_cols=49 Identities=18% Similarity=0.406 Sum_probs=31.0
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.+..|.+|.+.-..-.--.|...|...|+..-+...+ .+...||.|...
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p-~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIP-NGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCC-SSCCCCTTTTTT
T ss_pred CCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCC-CCccCChhhcCc
Confidence 3467999986322111125888888888865344433 456789999764
No 103
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.33 E-value=1.5 Score=31.68 Aligned_cols=31 Identities=29% Similarity=0.689 Sum_probs=23.0
Q ss_pred CccccccccccccCc----eeecCCCcccHhHHHH
Q 032386 6 CGDVCSVCHGNFNVP----CQANCSHWFCGNCIML 36 (142)
Q Consensus 6 ~~~~CpIC~~~~~~p----v~~~CgH~fC~~Ci~~ 36 (142)
++..|.+|...|..- ..-.||+.||..|-..
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 456899999877632 2246999999999754
No 104
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=73.01 E-value=0.57 Score=33.31 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=32.7
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
+.+..|.+|.+.-..-..-.|..+|+..|+..-+...+ .+...||.|+..
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~ 54 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFP-SGDWICTFCRDI 54 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCC-CCCEEeCceeCc
Confidence 34567999986432111125888999999865444433 456899999865
No 105
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=72.50 E-value=1.7 Score=37.02 Aligned_cols=54 Identities=26% Similarity=0.513 Sum_probs=38.7
Q ss_pred CCCccccccccccccCc----------eeecCCCcc--------------------cHhHHHHHHHhCCC---CCCCCCC
Q 032386 4 PPCGDVCSVCHGNFNVP----------CQANCSHWF--------------------CGNCIMLVWDHGST---LQACRCP 50 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p----------v~~~CgH~f--------------------C~~Ci~~~~~~~~~---~~~~~CP 50 (142)
|+|-..|+-|+..+.+| -.|+||..| |..|-.+|-.-..- -++..||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 57778999999877654 236788665 99999998653210 2345899
Q ss_pred CCccccc
Q 032386 51 LCRRRIT 57 (142)
Q Consensus 51 ~Cr~~~~ 57 (142)
.|.-.+.
T Consensus 188 ~CGP~l~ 194 (761)
T 3vth_A 188 DCGPSLS 194 (761)
T ss_dssp TTSCCEE
T ss_pred ccCCeeE
Confidence 9987664
No 106
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.33 E-value=8.8 Score=23.69 Aligned_cols=47 Identities=23% Similarity=0.663 Sum_probs=33.8
Q ss_pred ccccccccccccC----cee---ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNV----PCQ---ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~----pv~---~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...|.||-+..-. -+. -.|+-.-|..|++--.+..+ ..||.|+....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~----q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGT----QNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSC----SSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccC----ccccccCCccc
Confidence 3689999987531 112 24888999999976555544 58999998865
No 107
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=69.92 E-value=0.71 Score=26.23 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=29.1
Q ss_pred CCCccccccccccccCceee--c--CC-CcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 4 PPCGDVCSVCHGNFNVPCQA--N--CS-HWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
|.+...| +|.+.-...+.. + |. .+|...|+. +...+ .+...||.|+.
T Consensus 6 ~~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg--l~~~p-~~~w~Cp~C~~ 57 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKP-KGKWFCPRCVQ 57 (59)
T ss_dssp --CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCC--cccCC-CCCEECcCccC
Confidence 3445667 998854333322 4 66 699999996 34433 35678998864
No 108
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=68.37 E-value=5.8 Score=23.79 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=25.1
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+...|++|-..|... .-+....+......+..|+.|.+.+.
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeC
Confidence 4446777777766652 33344444333344578999988755
No 109
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.00 E-value=0.31 Score=27.31 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=29.8
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
..+..|.+|.+.-..-.--.|...|...|+..-+...+ .+...||.|..
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~H~~Cl~ppl~~~p-~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEECSSSSSSCCCSCC-CSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcceECccCCCCcCCCC-CCceEChhhhC
Confidence 34578999987422111125888888888865333333 34567887754
No 110
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=67.50 E-value=2.9 Score=28.64 Aligned_cols=47 Identities=28% Similarity=0.713 Sum_probs=31.2
Q ss_pred cccccccccccCcee--ecCCCcccHhHHHHHHHhCC-----CCCCCCCCCCcc
Q 032386 8 DVCSVCHGNFNVPCQ--ANCSHWFCGNCIMLVWDHGS-----TLQACRCPLCRR 54 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~--~~CgH~fC~~Ci~~~~~~~~-----~~~~~~CP~Cr~ 54 (142)
..|.||-+--..-.- .+|...||..||...+..+. ..++..|-+|.-
T Consensus 80 ~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 80 SYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred ceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 578888764321111 25889999999987654421 256679999974
No 111
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=67.33 E-value=2.7 Score=32.88 Aligned_cols=49 Identities=20% Similarity=0.566 Sum_probs=32.7
Q ss_pred ccccccccccccCceee--cCCCcccHhHHHHHHHhCC-----CCCCCCCCCCccc
Q 032386 7 GDVCSVCHGNFNVPCQA--NCSHWFCGNCIMLVWDHGS-----TLQACRCPLCRRR 55 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~--~CgH~fC~~Ci~~~~~~~~-----~~~~~~CP~Cr~~ 55 (142)
+..|.+|-+--.--..- +|...||..||...+..+. ..++..|-+|.-.
T Consensus 93 ~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 93 QSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp BCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 35788887744322222 7999999999988763221 1456799999854
No 112
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=66.52 E-value=0.91 Score=25.81 Aligned_cols=45 Identities=27% Similarity=0.558 Sum_probs=28.5
Q ss_pred CccccccccccccCceee--c--CC-CcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 6 CGDVCSVCHGNFNVPCQA--N--CS-HWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
+...| ||.+.-...+.. + |. .+|...|+. +...+ .+...||.|+.
T Consensus 9 e~~~C-~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg--l~~~p-~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKP-RGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCEE-ECCCcCCCCEEEeCCCCCCCceEehhcCC--CCcCC-CCCEECcCccC
Confidence 34566 898854333322 3 65 689999996 34433 35678998864
No 113
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=65.98 E-value=0.44 Score=27.63 Aligned_cols=51 Identities=22% Similarity=0.441 Sum_probs=32.0
Q ss_pred CCCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 4 PPCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
+..+..|.||.+.-..-.--.|...|...|+..-+...+ .+...||.|...
T Consensus 5 ~~~~~~C~vC~~~g~ll~CD~C~~~fH~~Cl~ppl~~~P-~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIP-SGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCCSSCEECSSCCCEECTTTSSSCCSSCC-SSCCCCHHHHHT
T ss_pred CCCCCCCccCCCCCCEEEcCCCChhhcccccCCCcCcCC-CCCeECccccCc
Confidence 456678999987422111125888888888864333333 356789999753
No 114
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=65.83 E-value=2.3 Score=22.98 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=28.8
Q ss_pred ccccccccccC-cee--ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 9 VCSVCHGNFNV-PCQ--ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 9 ~CpIC~~~~~~-pv~--~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
.|.||.+.-.. .+. -.|...|...|+..-+...+ .+...||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P-~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVP-DGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCC-SSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCC-CCcEECcCccc
Confidence 47888764322 122 25888999999965344433 45678999975
No 115
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=64.44 E-value=2.2 Score=29.88 Aligned_cols=49 Identities=22% Similarity=0.584 Sum_probs=30.3
Q ss_pred ccccccccccccCce----ee---cCCCcccHhHHHHH------HHhCCCCCCCCCCCCccc
Q 032386 7 GDVCSVCHGNFNVPC----QA---NCSHWFCGNCIMLV------WDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv----~~---~CgH~fC~~Ci~~~------~~~~~~~~~~~CP~Cr~~ 55 (142)
+..||||.....+.- .+ .|..||...|+.-- +..-+......||.|+..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 467999988654331 22 48899999998321 111000114699999875
No 116
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=64.22 E-value=4 Score=26.00 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=17.4
Q ss_pred CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 19 VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 19 ~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.+...+||+.|+ .....+..||.|+..
T Consensus 67 p~~C~~CG~~F~----------~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVFK----------AEINIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBCC----------CCSSCCSSCSSSCCC
T ss_pred CcChhhCcCeec----------ccCCCCCCCcCCCCC
Confidence 445567999992 111334589999864
No 117
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=64.07 E-value=4.2 Score=26.04 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=32.1
Q ss_pred cccccccccccC---ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNV---PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|..|...+.+ .....=|..||..|..+.+..+. .|-.|.+.|.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~-----~C~~C~~~I~ 80 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-----AGGSGGHMGS 80 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCC-----SSSCSSCCSC
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCC-----ccccCCCCcC
Confidence 578888887752 33445677899999988654322 7999998876
No 118
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=63.81 E-value=4.4 Score=23.58 Aligned_cols=34 Identities=21% Similarity=0.543 Sum_probs=25.6
Q ss_pred CCccccccccccccCceeecC-CCcccHhHHHHHHH
Q 032386 5 PCGDVCSVCHGNFNVPCQANC-SHWFCGNCIMLVWD 39 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~C-gH~fC~~Ci~~~~~ 39 (142)
++..-|.||.+.... .-..| |-.||..|..+...
T Consensus 6 ee~pWC~ICneDAtl-rC~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 6 SGLPWCCICNEDATL-RCAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CCCSSCTTTCSCCCE-EETTTTSEEECSSHHHHHTT
T ss_pred cCCCeeEEeCCCCeE-EecCCCCceehHHHHHHHcc
Confidence 445679999998552 34678 78999999988653
No 119
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=63.18 E-value=1.5 Score=30.71 Aligned_cols=48 Identities=19% Similarity=0.450 Sum_probs=31.2
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
+..|.+|.+--..-..-.|...|+..|+..-+...+ .+...||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p-~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVP-GEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCC-CTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCC-CCCCCCcCccCC
Confidence 467899986533222235888888888865444333 456789999865
No 120
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=62.56 E-value=1.2 Score=25.50 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=28.8
Q ss_pred CCccccccccccccCceee--c--CC-CcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 5 PCGDVCSVCHGNFNVPCQA--N--CS-HWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~--~--Cg-H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
.+...| +|.+.-...++. + |. .+|...|+. +...+ .+...||.|+.
T Consensus 9 ~e~~yC-~C~~~~~g~MI~CD~c~C~~~WfH~~Cvg--l~~~p-~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKP-KGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGT--CSSCC-SSCCCCHHHHT
T ss_pred CCCcEE-ECCCCCCCCeeeeeCCCCCcccEecccCC--cCcCC-CCCEECcCccc
Confidence 344566 998854332221 3 55 899999996 33333 45678999865
No 121
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=61.77 E-value=0.63 Score=26.35 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=29.3
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.+..|.+|.+.-..-.--.|...|...|+..-+...+ .+...||.|...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p-~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIP-KGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEECGGGSSSCCSSCC-CSCCCCHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCEECCcCCCCcCCCC-CCceEChhccCh
Confidence 4567888887421111125778888888864333333 355678888654
No 122
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=61.13 E-value=4.6 Score=25.77 Aligned_cols=43 Identities=16% Similarity=0.266 Sum_probs=31.3
Q ss_pred cccccccccccC-ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNV-PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|..|...+.. +....=|..||..|..+.. + ..|..|.+.+.
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~-----~~C~~C~~~I~ 74 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--A-----VVCQGCHNAID 74 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--C-----CBCTTTCSBCC
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcCc--C-----ccCcccCCcCC
Confidence 678888887764 3334567889999986632 2 27999999876
No 123
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=60.71 E-value=1.2 Score=30.54 Aligned_cols=51 Identities=18% Similarity=0.593 Sum_probs=31.3
Q ss_pred CCccccccccccccC-c--ee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 5 PCGDVCSVCHGNFNV-P--CQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~-p--v~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
.++..| +|...-.+ . +. -.|..||+..|+.---......+...||.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 445678 99876431 1 11 2589999999994322221124567999998753
No 124
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=59.61 E-value=4.2 Score=25.66 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=12.3
Q ss_pred cccHhHHHHHHHhC
Q 032386 28 WFCGNCIMLVWDHG 41 (142)
Q Consensus 28 ~fC~~Ci~~~~~~~ 41 (142)
.||..|+.+|...+
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999998874
No 125
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=59.38 E-value=4.3 Score=25.58 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=12.2
Q ss_pred cccHhHHHHHHHhC
Q 032386 28 WFCGNCIMLVWDHG 41 (142)
Q Consensus 28 ~fC~~Ci~~~~~~~ 41 (142)
.||..|+.+|...+
T Consensus 41 GFCRNCLskWy~~a 54 (104)
T 3fyb_A 41 DFCRNCLAKWLMEA 54 (104)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999998864
No 126
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=58.95 E-value=0.68 Score=27.90 Aligned_cols=16 Identities=25% Similarity=0.708 Sum_probs=13.7
Q ss_pred cCCCcccHhHHHHHHH
Q 032386 24 NCSHWFCGNCIMLVWD 39 (142)
Q Consensus 24 ~CgH~fC~~Ci~~~~~ 39 (142)
.|||.||..|-..|..
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6899999999988754
No 127
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.47 E-value=3.4 Score=27.42 Aligned_cols=50 Identities=14% Similarity=0.424 Sum_probs=30.5
Q ss_pred CCccccccccccccC--c---eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 5 PCGDVCSVCHGNFNV--P---CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~--p---v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.++..|.+|...+.. . +-..|.|.+|..|-...- .++......|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~-~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETS-NNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECC-CSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccC-CCCCccceechhhHHH
Confidence 456789999998732 1 234699999998874321 1111123467777654
No 128
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=57.75 E-value=13 Score=20.66 Aligned_cols=42 Identities=14% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+..+.|++|...|... .-+....+......+..|+.|.+.+.
T Consensus 15 ~~~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 15 DKPYKCDRCQASFRYK-----------GNLASHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CCSBCCTTSSCCBSCH-----------HHHHHHHHHHCCCCSEECTTTCCEES
T ss_pred CCCeECCCCCceeCCH-----------HHHHHHHHHcCCCCCEECCCCCchhC
Confidence 3447888887777653 22222222222234468999987644
No 129
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=56.48 E-value=2.5 Score=26.05 Aligned_cols=50 Identities=18% Similarity=0.428 Sum_probs=32.5
Q ss_pred CCccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
..+..|.+|.+.-..-.--.|.-.|...|+..-+..-+ .+...||.|...
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P-~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVP-GEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCC-SSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCc-CCCcCCccccCC
Confidence 34568999997532111125887888888866444434 456799999754
No 130
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=56.11 E-value=13 Score=24.95 Aligned_cols=44 Identities=20% Similarity=0.490 Sum_probs=30.1
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
=+.|..|...+.......=|..||..|..+.... .|..|.+.+.
T Consensus 33 CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~-------~C~~C~~~I~ 76 (169)
T 2rgt_A 33 CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGT-------KCAACQLGIP 76 (169)
T ss_dssp TSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSC-------BCTTTCCBCC
T ss_pred cCccCCCCCcCCCCCcccCCeeeecccccccccc-------cccccccccC
Confidence 3678888877765333445778999999775432 6778877664
No 131
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=56.11 E-value=7 Score=22.16 Aligned_cols=39 Identities=33% Similarity=0.789 Sum_probs=25.9
Q ss_pred ccccccccccCce---eecCCCcccHhHHHHHHHhCCCCCCCCCCCC
Q 032386 9 VCSVCHGNFNVPC---QANCSHWFCGNCIMLVWDHGSTLQACRCPLC 52 (142)
Q Consensus 9 ~CpIC~~~~~~pv---~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~C 52 (142)
.|--|+..+.+.. -..|++.||.+|=. +.+.. .-.||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~--fiHe~---Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDV--FVHDS---LHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHH--TTTTT---SCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhH--HHHhh---ccCCcCC
Confidence 4888888876543 24699999999963 22321 2378877
No 132
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=55.25 E-value=0.25 Score=30.16 Aligned_cols=42 Identities=26% Similarity=0.565 Sum_probs=26.7
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITLL 59 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~l 59 (142)
..||.|...+..- =++.+|..|-..+-..+ .||.|.+++..+
T Consensus 3 ~~CP~C~~~l~~~----~~~~~C~~C~~~~~~~a------fCPeCgq~Le~l 44 (81)
T 2jrp_A 3 ITCPVCHHALERN----GDTAHCETCAKDFSLQA------LCPDCRQPLQVL 44 (81)
T ss_dssp CCCSSSCSCCEEC----SSEEECTTTCCEEEEEE------ECSSSCSCCCEE
T ss_pred CCCCCCCCccccC----CCceECccccccCCCcc------cCcchhhHHHHH
Confidence 6899999866421 11445777765543332 799998887754
No 133
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=53.33 E-value=5.8 Score=26.92 Aligned_cols=47 Identities=19% Similarity=0.436 Sum_probs=31.7
Q ss_pred CCccccccccccccC-----ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 5 PCGDVCSVCHGNFNV-----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~-----pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.++..|.+|...|.. .+-..|.|.+|..|-. |.. ......|-+|++.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~---~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHP---EEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCS---SSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccC---CCCcEeeHHHHHH
Confidence 356899999997642 2234699999999983 221 1234678888765
No 134
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.28 E-value=12 Score=22.13 Aligned_cols=48 Identities=23% Similarity=0.694 Sum_probs=29.9
Q ss_pred ccccccccccc--Cce-e-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 8 DVCSVCHGNFN--VPC-Q-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 8 ~~CpIC~~~~~--~pv-~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
..| ||..... ..+ . -.|..||...|+.---......+...||.|+...
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 455 8987653 222 2 2599999999995322222123567999998753
No 135
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=51.94 E-value=2.8 Score=24.39 Aligned_cols=47 Identities=19% Similarity=0.455 Sum_probs=29.6
Q ss_pred CCccccccccccccCceee---cCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 5 PCGDVCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
.+...| ||.........+ .|..||...|+.-- .....+...||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~--~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIR--KSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCC--TTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcC--cccCCCcEECCCCCC
Confidence 455677 898755432222 48899999999532 212235678888865
No 136
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=51.53 E-value=7.1 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.428 Sum_probs=20.7
Q ss_pred ccccccccccccCceeecCCCcccHh
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGN 32 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~ 32 (142)
+..|..|...-..-+-+.|||.+|.+
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr 49 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGR 49 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECT
T ss_pred CCcCccccCCCCeeeeeecCccccCC
Confidence 45799998776666778999999953
No 137
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=51.40 E-value=9 Score=21.94 Aligned_cols=31 Identities=23% Similarity=0.598 Sum_probs=20.1
Q ss_pred CCCccccccccccccCc--e-e-e-cCCCcccHhHH
Q 032386 4 PPCGDVCSVCHGNFNVP--C-Q-A-NCSHWFCGNCI 34 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~p--v-~-~-~CgH~fC~~Ci 34 (142)
.+....|++|.....+- . . - .|.-+|...|+
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 34557899999875432 1 1 2 68899999998
No 138
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=51.28 E-value=8 Score=24.00 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=28.2
Q ss_pred cccccccccccCceee---cCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 8 DVCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
..| ||...-.....+ .|..+|...|+..-... ..+...||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~--~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH--IPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS--CCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC--CCCCEECCCCcC
Confidence 567 787654433333 58899999998542222 234579999974
No 139
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=50.64 E-value=18 Score=18.67 Aligned_cols=39 Identities=13% Similarity=0.367 Sum_probs=21.5
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|++|...|... .-+....+......+..|+.|...+.
T Consensus 2 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKP-----------SMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSH-----------HHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCH-----------HHHHHHHHhcCCCCCccCCCCCchhc
Confidence 4577776666542 22233333333234568999988754
No 140
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.51 E-value=1.4 Score=25.04 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=22.3
Q ss_pred ccccccccccccCc-----ee-ec--CCCcccHhHHHHHHHh
Q 032386 7 GDVCSVCHGNFNVP-----CQ-AN--CSHWFCGNCIMLVWDH 40 (142)
Q Consensus 7 ~~~CpIC~~~~~~p-----v~-~~--CgH~fC~~Ci~~~~~~ 40 (142)
...||-|.-.+... ++ .. |++.||..|...|-.+
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 46799988877531 22 23 7888888887775444
No 141
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=50.20 E-value=12 Score=23.89 Aligned_cols=47 Identities=15% Similarity=0.336 Sum_probs=33.1
Q ss_pred CccccccccccccC---ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNV---PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+=+.|..|...+.. +....=|..||..|..+..... ..|..|.+.+.
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~-----~~C~~C~~~I~ 77 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD-----GLCASCDKRIR 77 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC-----EECTTTCCEEC
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc-----cChhhcCCccC
Confidence 33788888887752 4445567889999998765432 16999988875
No 142
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=50.17 E-value=3.2 Score=25.67 Aligned_cols=47 Identities=21% Similarity=0.435 Sum_probs=29.1
Q ss_pred CCccccccccccccCceee--cCC---CcccHhHHHHHHHhCCCCCCCCCCC-Cccc
Q 032386 5 PCGDVCSVCHGNFNVPCQA--NCS---HWFCGNCIMLVWDHGSTLQACRCPL-CRRR 55 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~--~Cg---H~fC~~Ci~~~~~~~~~~~~~~CP~-Cr~~ 55 (142)
.+...| ||...-...++. +|. .+|...|+. +...+ .+...||. |+..
T Consensus 24 ~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVg--l~~~p-~~~W~Cp~cC~~~ 76 (90)
T 2jmi_A 24 QEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAP-KGKWYCSKDCKEI 76 (90)
T ss_dssp CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSS--CSSCT-TSCCCSSHHHHHH
T ss_pred CCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCC--CCcCC-CCCccCChhhcch
Confidence 344567 998743333332 344 699999995 33333 35678999 9753
No 143
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=50.08 E-value=3.4 Score=32.14 Aligned_cols=32 Identities=22% Similarity=0.532 Sum_probs=0.0
Q ss_pred ccccccccccccCc----eeecCCCcccHhHHHHHH
Q 032386 7 GDVCSVCHGNFNVP----CQANCSHWFCGNCIMLVW 38 (142)
Q Consensus 7 ~~~CpIC~~~~~~p----v~~~CgH~fC~~Ci~~~~ 38 (142)
...|.+|...|..- ..-.||+.||..|.....
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 35799999877532 224699999999996543
No 144
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=49.97 E-value=21 Score=20.61 Aligned_cols=17 Identities=29% Similarity=0.603 Sum_probs=12.0
Q ss_pred CCCCccccccccccccC
Q 032386 3 GPPCGDVCSVCHGNFNV 19 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~~ 19 (142)
+.+..+.|++|...|..
T Consensus 4 ~~~~~~~C~~C~~~f~~ 20 (96)
T 2dmd_A 4 GSSGPHKCEVCGKCFSR 20 (96)
T ss_dssp CCCCCCCBTTTTBCCCC
T ss_pred CCCcCeECCCCCCccCC
Confidence 34455789999887754
No 145
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=49.67 E-value=18 Score=18.92 Aligned_cols=39 Identities=26% Similarity=0.516 Sum_probs=21.7
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|++|...|... .-+..-.+......+..|+.|.+.+.
T Consensus 3 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQ-----------EHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCH-----------HHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred CcCCCCccccCCH-----------HHHHHHHHHhCCCCCccCCCCCCccC
Confidence 5677777666542 22233333322233568999988754
No 146
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=49.59 E-value=5.4 Score=27.53 Aligned_cols=45 Identities=18% Similarity=0.476 Sum_probs=29.2
Q ss_pred cccccccccccC---ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNV---PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|..|...+.. .....=|..||..|..+...... .|..|.+.+.
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~-----~C~~C~~~I~ 80 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSG-----ACSACGQSIP 80 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCE-----ECTTTCCEEC
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccCC-----ccccCCCccc
Confidence 677777776653 44445567889998877543211 4888877764
No 147
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.55 E-value=3.3 Score=24.63 Aligned_cols=49 Identities=20% Similarity=0.478 Sum_probs=29.6
Q ss_pred CccccccccccccCc-ee--e--cCCCcccHhHHHHHHHhC----CCCCCCCCCCCccc
Q 032386 6 CGDVCSVCHGNFNVP-CQ--A--NCSHWFCGNCIMLVWDHG----STLQACRCPLCRRR 55 (142)
Q Consensus 6 ~~~~CpIC~~~~~~p-v~--~--~CgH~fC~~Ci~~~~~~~----~~~~~~~CP~Cr~~ 55 (142)
+...| ||....... ++ - .|..||...|+.---..+ .......||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 34677 898863332 22 1 588999999994311111 11346789999764
No 148
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=48.50 E-value=9.7 Score=19.79 Aligned_cols=40 Identities=15% Similarity=0.358 Sum_probs=21.4
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+.|++|...|... .-+....+......+..|+.|.+.+.
T Consensus 4 ~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 4 SRECSYCGKFFRSN-----------YYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp -CBCTTTCCBCSCH-----------HHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred CccCCCCcchhCCh-----------HHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 46788887777653 12222222211123468999987644
No 149
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=48.21 E-value=5.4 Score=19.09 Aligned_cols=12 Identities=17% Similarity=0.251 Sum_probs=5.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
..||+|...+-+
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 445555544433
No 150
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=47.98 E-value=28 Score=17.94 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=22.2
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHH-hCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWD-HGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~-~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|++|-..|.. ..-+....+ ......+..|+.|.+.+.
T Consensus 13 ~~C~~C~k~f~~-----------~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 13 YICQSCGKGFSR-----------PDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp EECSSSCCEESS-----------HHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred eECCCCCcccCC-----------HHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 577777666654 233334433 222234578999987653
No 151
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=47.33 E-value=16 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.569 Sum_probs=21.4
Q ss_pred cCCCcccHhHH------HHHHHhCCCCCCCCCCCCccc
Q 032386 24 NCSHWFCGNCI------MLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 24 ~CgH~fC~~Ci------~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.|++||+..|. .+.+.+.+......||.|...
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 48999999996 223344333445799999754
No 152
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=47.00 E-value=5.7 Score=25.02 Aligned_cols=49 Identities=20% Similarity=0.558 Sum_probs=30.4
Q ss_pred CCCccccccccccccC-c-ee-ecCCCcccHhHHHHHHHhCCCCCCCCCCCCc
Q 032386 4 PPCGDVCSVCHGNFNV-P-CQ-ANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~-p-v~-~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr 53 (142)
...+..|.+|.+.-.. . +. ..|+..|...|+.......+ .+...||.|+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~-~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLK-RAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTT-STTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccccc-ccCccCCcCC
Confidence 3567889999876432 1 22 46999999999865432211 2345677664
No 153
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=46.37 E-value=16 Score=21.70 Aligned_cols=32 Identities=31% Similarity=0.616 Sum_probs=24.5
Q ss_pred CCCCCCcccccc--ccccccCceeec-CCCcccHh
Q 032386 1 MEGPPCGDVCSV--CHGNFNVPCQAN-CSHWFCGN 32 (142)
Q Consensus 1 ~~~~~~~~~CpI--C~~~~~~pv~~~-CgH~fC~~ 32 (142)
|+-|.-...|.. |...-..|..=. |+..||.+
T Consensus 8 m~~~~~g~~Cs~~~C~~~dflpf~C~~C~~~FC~~ 42 (75)
T 1wys_A 8 MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCCCCCCCCSCTTTCCCSCCCEECTTTCCEECST
T ss_pred ccccccCCCcCcccCCCccceeeECcccCcCcCcc
Confidence 666777789988 998755577655 99999974
No 154
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=45.70 E-value=15 Score=20.30 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=22.3
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..+.|++|...|... .-+..-.+......+..|+.|.+.+.
T Consensus 13 k~~~C~~C~k~f~~~-----------~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRS-----------SILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSH-----------HHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccCCH-----------HHHHHHHHhcCCCCCeECCCCCcccC
Confidence 346788777766542 22222222222234568999987644
No 155
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=45.53 E-value=12 Score=25.58 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=25.1
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|..|...+.......=|..||..|..+.+ + ..|..|.+.+.
T Consensus 88 F~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f--~-----~kC~~C~~~I~ 130 (182)
T 2jtn_A 88 LKCSDCHVPLAERCFSRGESVYCKDDFFKRF--G-----TKCAACQLGIP 130 (182)
T ss_dssp TSCTTTCCCCSSCCEEETTEEECHHHHHHTT--S-----CCCTTTCCCCC
T ss_pred CccCCCCCccCCCceeECCEeeecCcccccc--c-----cccccCCCccC
Confidence 4555665555432222335667888875532 2 27888888764
No 156
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.31 E-value=38 Score=18.83 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=15.6
Q ss_pred cccccccccccCc-eeecCCCcccHhHHHHHHH
Q 032386 8 DVCSVCHGNFNVP-CQANCSHWFCGNCIMLVWD 39 (142)
Q Consensus 8 ~~CpIC~~~~~~p-v~~~CgH~fC~~Ci~~~~~ 39 (142)
+.|..|...+... ....=+..||..|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 4555555554322 2223345666666655543
No 157
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.61 E-value=1.2 Score=27.54 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=29.7
Q ss_pred CCccccccccccccC-ceee--cCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 5 PCGDVCSVCHGNFNV-PCQA--NCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~-pv~~--~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.++..|.||...-.. .+.. .|...|...|+..-+...+ .+...||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P-~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIP-RGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCC-SSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCC-CCCcCCccCcCc
Confidence 456689999875321 1221 4777777777753333333 345678888654
No 158
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=44.24 E-value=30 Score=17.20 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=18.5
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr 53 (142)
.+.|++|...|... .-+...++......+..|+.|.
T Consensus 12 ~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~k~~~C~~C~ 47 (48)
T 2epr_A 12 QVACEICGKIFRDV-----------YHLNRHKLSHSGEKPYSSGPSS 47 (48)
T ss_dssp SEEETTTTEEESSH-----------HHHHHHGGGSCSCCCCCSCCCC
T ss_pred CeeCCCCCcccCCH-----------HHHHHHHHhcCCCCCccCCCCC
Confidence 36777776666542 2222333322223346788885
No 159
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=44.06 E-value=28 Score=16.90 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=7.6
Q ss_pred ccccccccccccC
Q 032386 7 GDVCSVCHGNFNV 19 (142)
Q Consensus 7 ~~~CpIC~~~~~~ 19 (142)
.+.|++|-..|..
T Consensus 10 ~~~C~~C~k~f~~ 22 (45)
T 2epq_A 10 PYSCPVCGLRFKR 22 (45)
T ss_dssp SSEETTTTEECSC
T ss_pred CCcCCCCCcccCC
Confidence 3567666665543
No 160
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=43.82 E-value=12 Score=21.21 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=12.3
Q ss_pred CCCcccccccccc-ccCc
Q 032386 4 PPCGDVCSVCHGN-FNVP 20 (142)
Q Consensus 4 ~~~~~~CpIC~~~-~~~p 20 (142)
..+...|.||... |.+.
T Consensus 6 ~~d~~~C~iC~KTKFADG 23 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADG 23 (62)
T ss_dssp SSCCCCCSSSSCSCCCSS
T ss_pred cCCcchhhhhccceeccC
Confidence 3566899999984 5553
No 161
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=43.09 E-value=22 Score=20.51 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=10.9
Q ss_pred CCccccccccccccC
Q 032386 5 PCGDVCSVCHGNFNV 19 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~ 19 (142)
+..+.|++|...|..
T Consensus 5 ~~~~~C~~C~~~f~~ 19 (95)
T 2yt9_A 5 SSGVACEICGKIFRD 19 (95)
T ss_dssp CSCEECSSSCCEESS
T ss_pred CCCeECCCCCCccCC
Confidence 445789999887754
No 162
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=42.97 E-value=19 Score=21.20 Aligned_cols=32 Identities=16% Similarity=0.503 Sum_probs=23.5
Q ss_pred CCccccccccccc-cCce--eecCCCcccHhHHHH
Q 032386 5 PCGDVCSVCHGNF-NVPC--QANCSHWFCGNCIML 36 (142)
Q Consensus 5 ~~~~~CpIC~~~~-~~pv--~~~CgH~fC~~Ci~~ 36 (142)
+.+..|..|.+.- ..++ .+.|.-+||..|+..
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 3467899998754 3333 367999999999975
No 163
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.90 E-value=26 Score=19.41 Aligned_cols=41 Identities=12% Similarity=0.267 Sum_probs=22.9
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..+.|++|...|... .-+...++......+..|+.|.+.+.
T Consensus 17 ~~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 17 RRYKCDECGKSFSHS-----------SDLSKHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp CSSBCSSSCCBCSCH-----------HHHHHHHTTTCCSCSEECSSSCCEES
T ss_pred CCEECCCCCcccCCH-----------HHHHHHHHHcCCCcCeeCCCCCCccC
Confidence 346788887766642 22223233222233468999987654
No 164
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.60 E-value=23 Score=19.25 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=23.0
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..+.|++|...|... .-+....+......+..|+.|.+.+.
T Consensus 8 ~~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 8 HPEKCSECSYSCSSK-----------AALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp CSEECSSSSCEESSH-----------HHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred CCeECCCCCcccCCH-----------HHHHHHHHHcCCCCCEeCCCCCCccC
Confidence 346788877766642 22223333322234568999987644
No 165
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=42.54 E-value=5.6 Score=18.61 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=8.0
Q ss_pred CCcccccccccccc
Q 032386 5 PCGDVCSVCHGNFN 18 (142)
Q Consensus 5 ~~~~~CpIC~~~~~ 18 (142)
+-...||+|+..+.
T Consensus 4 ef~vqcpvcqq~mp 17 (29)
T 3vhs_A 4 EFQVQCPVCQQMMP 17 (29)
T ss_dssp -CEEECTTTCCEEE
T ss_pred ceeeeChHHHHhCc
Confidence 33457777776543
No 166
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=42.18 E-value=13 Score=20.48 Aligned_cols=41 Identities=12% Similarity=0.269 Sum_probs=23.8
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.-+.|.+|-..|... .-+....+......+..|+.|.+.+.
T Consensus 3 Kpy~C~~C~k~F~~~-----------~~L~~H~~~Ht~ekp~~C~~C~k~F~ 43 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDA-----------SGLSRHRRAHLGYRPRSCPECGKCFR 43 (60)
T ss_dssp CCEECTTTCCEESSH-----------HHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred CCccCCCCCCEeCCH-----------HHHHHHHHHhCCCcCeECCCCCCCcC
Confidence 346788777777653 22333333222234568999998755
No 167
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.68 E-value=31 Score=16.72 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=7.7
Q ss_pred ccccccccccccC
Q 032386 7 GDVCSVCHGNFNV 19 (142)
Q Consensus 7 ~~~CpIC~~~~~~ 19 (142)
.+.|++|...|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2eoe_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SSEETTTTEECSS
T ss_pred CeECCCcChhhCC
Confidence 3566666665554
No 168
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=41.16 E-value=7.7 Score=20.81 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=6.0
Q ss_pred CCCcccccccc
Q 032386 4 PPCGDVCSVCH 14 (142)
Q Consensus 4 ~~~~~~CpIC~ 14 (142)
.+++..||+|-
T Consensus 27 lP~dw~CP~Cg 37 (46)
T 6rxn_A 27 LPDDWCCPVCG 37 (46)
T ss_dssp SCTTCBCTTTC
T ss_pred CCCCCcCcCCC
Confidence 34455666664
No 169
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.95 E-value=15 Score=20.59 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=24.1
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRITL 58 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~~ 58 (142)
....|.-|.+.+...+...-+..|..+|. .|-.|++++..
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~~ 43 (70)
T 2d8x_A 4 GSSGCHQCGEFIIGRVIKAMNNSWHPECF-------------RCDLCQEVLAD 43 (70)
T ss_dssp CSSBCSSSCCBCCSCCEEETTEEECTTTS-------------BCSSSCCBCSS
T ss_pred CCCcCccCCCEecceEEEECcccccccCC-------------EeCCCCCcCCC
Confidence 34578888887665444444444444443 67777776553
No 170
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.72 E-value=33 Score=16.68 Aligned_cols=12 Identities=42% Similarity=0.750 Sum_probs=6.6
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eml_A 13 YECSVCGKAFSH 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCCcCCccCC
Confidence 556666555543
No 171
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.71 E-value=33 Score=16.65 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=7.6
Q ss_pred ccccccccccccC
Q 032386 7 GDVCSVCHGNFNV 19 (142)
Q Consensus 7 ~~~CpIC~~~~~~ 19 (142)
.+.|++|...|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eov_A 12 PYKCSDCGKSFTW 24 (46)
T ss_dssp SCBCSSSCCBCSS
T ss_pred CccCCccChhhCC
Confidence 3566666665554
No 172
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=40.49 E-value=42 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=10.1
Q ss_pred CccccccccccccC
Q 032386 6 CGDVCSVCHGNFNV 19 (142)
Q Consensus 6 ~~~~CpIC~~~~~~ 19 (142)
..+.|++|...|..
T Consensus 16 ~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 16 KEFICKFCGRHFTK 29 (106)
T ss_dssp CCCBCSSSCCBCSS
T ss_pred cCeECCCCCCccCC
Confidence 34788888877754
No 173
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.43 E-value=35 Score=16.62 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2em5_A 13 HQCHECGRGFTL 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECCcCCCccCC
Confidence 556665555543
No 174
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=39.37 E-value=13 Score=22.23 Aligned_cols=28 Identities=25% Similarity=0.610 Sum_probs=17.8
Q ss_pred ccccccccc-----Cceeec-CCCcccHhHHHHH
Q 032386 10 CSVCHGNFN-----VPCQAN-CSHWFCGNCIMLV 37 (142)
Q Consensus 10 CpIC~~~~~-----~pv~~~-CgH~fC~~Ci~~~ 37 (142)
||-|...+. .++.=+ |++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 886766432 123433 8888888888775
No 175
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.19 E-value=35 Score=16.57 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=7.1
Q ss_pred ccccccccccccC
Q 032386 7 GDVCSVCHGNFNV 19 (142)
Q Consensus 7 ~~~CpIC~~~~~~ 19 (142)
.+.|++|...|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2ytn_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCeeCC
Confidence 3566666555543
No 176
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.14 E-value=35 Score=16.56 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ep2_A 13 YECSICGKSFTK 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred cCCCCCCcccCC
Confidence 566666555543
No 177
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.11 E-value=35 Score=16.53 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=7.4
Q ss_pred ccccccccccccC
Q 032386 7 GDVCSVCHGNFNV 19 (142)
Q Consensus 7 ~~~CpIC~~~~~~ 19 (142)
.+.|++|...|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eq4_A 12 LYNCKECGKSFSR 24 (46)
T ss_dssp CCCBTTTTBCCSC
T ss_pred CeECCCCCCccCc
Confidence 3566666655554
No 178
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=38.80 E-value=35 Score=16.50 Aligned_cols=12 Identities=33% Similarity=0.719 Sum_probs=6.2
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2el4_A 13 YGCSQCAKTFSL 24 (46)
T ss_dssp EECSSSSCEESS
T ss_pred eECCCCCchhCC
Confidence 456655554443
No 179
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.73 E-value=36 Score=16.53 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytd_A 13 YKCSECGKAFHR 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCeeCC
Confidence 556665555443
No 180
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.20 E-value=36 Score=16.46 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eop_A 13 HECRECGKSFSF 24 (46)
T ss_dssp CBCTTTCCBCSS
T ss_pred eeCCCCCchhCC
Confidence 566666555543
No 181
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.89 E-value=37 Score=16.47 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ysp_A 13 YKCEKCGKGYNS 24 (46)
T ss_dssp EEETTTTEEESC
T ss_pred eECCCCCCccCC
Confidence 566666555543
No 182
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=37.73 E-value=6.1 Score=24.05 Aligned_cols=43 Identities=19% Similarity=0.391 Sum_probs=27.4
Q ss_pred cccccccccccCc-eeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVP-CQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|..|...+... ....=|..||..|..+. .+ ..|..|.+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~-----~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTRE--DS-----PKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CC-----CBCSSSCCBCC
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhh--cC-----CccccCCCccc
Confidence 5677777766543 23345677888887442 12 38999988765
No 183
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=37.62 E-value=6.4 Score=24.96 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=26.5
Q ss_pred ccccccccccC--cee--ecCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 9 VCSVCHGNFNV--PCQ--ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 9 ~CpIC~~~~~~--pv~--~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
.|.+|.+.-.+ .+. -.|...|...|+..-+...+ .+...||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P-~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMP-KGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCC-SSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCC-CCCeECCCCCC
Confidence 46667653222 122 14888888888855444433 34578998874
No 184
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.58 E-value=37 Score=16.41 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=6.8
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2emm_A 13 HKCNECGKSFIQ 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCCCChhhCC
Confidence 566666555543
No 185
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.54 E-value=38 Score=16.44 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=6.6
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2epz_A 13 FDCIDCGKAFSD 24 (46)
T ss_dssp BCCTTTCCCBSS
T ss_pred eECCCCCceeCC
Confidence 556665555543
No 186
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.78 E-value=37 Score=16.46 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytk_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred EeCCcCCCccCC
Confidence 566666555543
No 187
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.53 E-value=39 Score=16.36 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=6.9
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eoq_A 13 FKCDICGKSFCG 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred cCCCcCCchhCC
Confidence 566666555543
No 188
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.51 E-value=39 Score=16.33 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytr_A 13 YKCNECGKAFSQ 24 (46)
T ss_dssp TCCTTTCCCCSS
T ss_pred cCCCCCCCccCC
Confidence 556665555543
No 189
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.49 E-value=39 Score=16.36 Aligned_cols=12 Identities=25% Similarity=0.503 Sum_probs=6.4
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ene_A 13 YKCNECGKVFRH 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCchhCC
Confidence 556665555443
No 190
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.28 E-value=39 Score=16.36 Aligned_cols=12 Identities=25% Similarity=0.537 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2emy_A 13 YECHECGKAFSR 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred cCCCCCCcccCc
Confidence 556665555443
No 191
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=36.07 E-value=14 Score=20.24 Aligned_cols=11 Identities=36% Similarity=0.767 Sum_probs=6.4
Q ss_pred CCccccccccc
Q 032386 5 PCGDVCSVCHG 15 (142)
Q Consensus 5 ~~~~~CpIC~~ 15 (142)
+++..||+|-.
T Consensus 34 P~dw~CP~Cg~ 44 (52)
T 1e8j_A 34 PDDWACPVCGA 44 (52)
T ss_dssp CTTCCCSSSCC
T ss_pred CCCCcCCCCCC
Confidence 45556666654
No 192
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=35.86 E-value=40 Score=16.28 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=5.8
Q ss_pred ccccccccccc
Q 032386 8 DVCSVCHGNFN 18 (142)
Q Consensus 8 ~~CpIC~~~~~ 18 (142)
+.|++|...|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em9_A 13 YNCKECGKSFR 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCccccccC
Confidence 45555555444
No 193
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=35.61 E-value=38 Score=16.43 Aligned_cols=11 Identities=27% Similarity=0.627 Sum_probs=5.6
Q ss_pred ccccccccccc
Q 032386 8 DVCSVCHGNFN 18 (142)
Q Consensus 8 ~~CpIC~~~~~ 18 (142)
+.|++|...|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ema_A 13 YKCNECGKVFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred cCCCCCcchhC
Confidence 45555554444
No 194
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=35.49 E-value=49 Score=19.83 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=10.9
Q ss_pred CCccccccccccccC
Q 032386 5 PCGDVCSVCHGNFNV 19 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~ 19 (142)
...+.|++|...|..
T Consensus 5 ~~~~~C~~C~~~f~~ 19 (124)
T 2dlq_A 5 SSGVECPTCHKKFLS 19 (124)
T ss_dssp CSSCCCTTTCCCCSS
T ss_pred CCCCCCCCCCCcCCC
Confidence 445789999887754
No 195
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.41 E-value=26 Score=20.14 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=26.2
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
....|.-|.+.+...+...-+..|...|. .|-.|++.+.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY-------------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT-------------SCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC-------------eeCCCCCCCC
Confidence 34689999987766555555655555554 6788887765
No 196
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.15 E-value=22 Score=19.75 Aligned_cols=39 Identities=13% Similarity=0.413 Sum_probs=22.6
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
....|.-|.+.+.......-+..|...|. .|..|++++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~ 42 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQDQPWHADCF-------------VCVTCSKKLA 42 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEETTEEECTTTT-------------BCTTTCCBCT
T ss_pred CcCCCcccCCEeCcceEEECccccccCcC-------------EECCCCCCCC
Confidence 34578888876654444334444444443 6777777654
No 197
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.04 E-value=42 Score=16.21 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=6.4
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eme_A 13 YVCDYCGKAFGL 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCChhhCC
Confidence 556665555443
No 198
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=34.81 E-value=43 Score=16.26 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ely_A 13 FKCVECGKGFSR 24 (46)
T ss_dssp BCCSSSCCCBSS
T ss_pred cccCccCcccCC
Confidence 566666555543
No 199
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=34.75 E-value=43 Score=16.26 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=7.6
Q ss_pred ccccccccccccC
Q 032386 7 GDVCSVCHGNFNV 19 (142)
Q Consensus 7 ~~~CpIC~~~~~~ 19 (142)
.+.|++|...|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emk_A 12 PYECKECGKAFSQ 24 (46)
T ss_dssp SCBCSSSCCBCSC
T ss_pred ceECCCCCchhCC
Confidence 3566666665554
No 200
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.74 E-value=43 Score=16.29 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=7.6
Q ss_pred ccccccccccccC
Q 032386 7 GDVCSVCHGNFNV 19 (142)
Q Consensus 7 ~~~CpIC~~~~~~ 19 (142)
.+.|++|...|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2ytm_A 12 PYKCMECGKAFGD 24 (46)
T ss_dssp SSSBTTTTBCCSS
T ss_pred CcCCCCCCchhCC
Confidence 3566666665554
No 201
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.57 E-value=42 Score=16.26 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2en1_A 13 FKCEECGKRFTQ 24 (46)
T ss_dssp EEETTTTEEESS
T ss_pred eeCCCCCcccCC
Confidence 566666555543
No 202
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=34.56 E-value=43 Score=16.21 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=6.3
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2em0_A 13 WKCRECDMCFSQ 24 (46)
T ss_dssp CCCSSSCCCCSS
T ss_pred eECCCCCcccCC
Confidence 456655555443
No 203
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=34.39 E-value=34 Score=18.16 Aligned_cols=40 Identities=18% Similarity=0.426 Sum_probs=22.4
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHh-C-CCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDH-G-STLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~-~~~~~~~CP~Cr~~~~ 57 (142)
.+.|++|...|... .-+..-.+. . ....+..|+.|.+.+.
T Consensus 10 ~~~C~~C~k~f~~~-----------~~l~~H~~~~H~~~~~~~~C~~C~k~f~ 51 (66)
T 2drp_A 10 TYRCKVCSRVYTHI-----------SNFCRHYVTSHKRNVKVYPCPFCFKEFT 51 (66)
T ss_dssp EEECTTTCCEESSH-----------HHHHHHHHHHSSSSCCCEECTTTCCEES
T ss_pred ceECCCCcchhCCH-----------HHHHHHHHHHcCCCCcCeECCCCCCccC
Confidence 35777777666542 223333332 2 2234568999988744
No 204
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=33.93 E-value=7 Score=23.27 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=20.5
Q ss_pred cCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 24 NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 24 ~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
.|...|...|+..-+...+......||.|+.
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 4878888888875555544322278999974
No 205
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.87 E-value=44 Score=16.12 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2en8_A 13 HTCDECGKNFCY 24 (46)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCcCcccCC
Confidence 556665555443
No 206
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=33.80 E-value=8.1 Score=22.44 Aligned_cols=46 Identities=24% Similarity=0.488 Sum_probs=27.7
Q ss_pred ccccccccccCceee---cCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 9 VCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
.|.+|...-.....+ .|...|...|+..-+...+..+...||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 345666432222222 4888999999875445444222678999975
No 207
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.61 E-value=45 Score=16.13 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=5.8
Q ss_pred ccccccccccc
Q 032386 8 DVCSVCHGNFN 18 (142)
Q Consensus 8 ~~CpIC~~~~~ 18 (142)
+.|++|...|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em7_A 13 YKCEECGKGFI 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCccchhC
Confidence 45555555444
No 208
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.47 E-value=45 Score=16.16 Aligned_cols=12 Identities=33% Similarity=0.592 Sum_probs=6.8
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytq_A 13 YGCSECGKAFSS 24 (46)
T ss_dssp CBCSSSCCBCSC
T ss_pred cCCCccChhhCC
Confidence 566666555543
No 209
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.47 E-value=45 Score=16.16 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=6.6
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2elz_A 13 YKCEDCGKGYNR 24 (46)
T ss_dssp CBCSSSCCBCSS
T ss_pred eeCcccCchhCC
Confidence 556666555543
No 210
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=33.44 E-value=35 Score=20.70 Aligned_cols=26 Identities=19% Similarity=0.600 Sum_probs=19.9
Q ss_pred ccccccccccccC--ceeecCCCcccHh
Q 032386 7 GDVCSVCHGNFNV--PCQANCSHWFCGN 32 (142)
Q Consensus 7 ~~~CpIC~~~~~~--pv~~~CgH~fC~~ 32 (142)
...|..|...... +..=.||..||..
T Consensus 25 ~~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred CccchhhCCeecccCCeEcCCCCEeccc
Confidence 3689999985543 6666799999984
No 211
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.65 E-value=47 Score=16.06 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=5.8
Q ss_pred ccccccccccc
Q 032386 8 DVCSVCHGNFN 18 (142)
Q Consensus 8 ~~CpIC~~~~~ 18 (142)
+.|++|...|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2eq0_A 13 YKCHECGKVFR 23 (46)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCchhC
Confidence 45655555444
No 212
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.57 E-value=36 Score=18.79 Aligned_cols=38 Identities=16% Similarity=0.476 Sum_probs=23.6
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...|.-|...+.......-+..|...|. .|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKECF-------------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTTS-------------BCSSSCCBCT
T ss_pred CCCCcccCCeeccceEEECccccCCCCC-------------ccCCCCCcCC
Confidence 3578888887665544445555555443 6777877654
No 213
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=32.53 E-value=22 Score=20.59 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=10.2
Q ss_pred Ccccccccccccc
Q 032386 6 CGDVCSVCHGNFN 18 (142)
Q Consensus 6 ~~~~CpIC~~~~~ 18 (142)
+-+.||+|.+.+.
T Consensus 7 ~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 7 DILVCPVTKGRLE 19 (68)
T ss_dssp CCCBCSSSCCBCE
T ss_pred hheECCCCCCcCe
Confidence 4479999998765
No 214
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.53 E-value=47 Score=16.05 Aligned_cols=12 Identities=42% Similarity=0.955 Sum_probs=6.3
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ep0_A 13 YKCDVCHKSFRY 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eeCcccCcccCC
Confidence 456655554443
No 215
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=32.36 E-value=17 Score=21.96 Aligned_cols=9 Identities=33% Similarity=0.859 Sum_probs=4.9
Q ss_pred CCCCCCccc
Q 032386 47 CRCPLCRRR 55 (142)
Q Consensus 47 ~~CP~Cr~~ 55 (142)
..||.|...
T Consensus 61 W~CPvCga~ 69 (81)
T 2kn9_A 61 WSCPDCGAA 69 (81)
T ss_dssp CCCTTTCCC
T ss_pred CcCCCCCCC
Confidence 356666554
No 216
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.26 E-value=48 Score=16.06 Aligned_cols=11 Identities=27% Similarity=0.634 Sum_probs=5.6
Q ss_pred ccccccccccc
Q 032386 8 DVCSVCHGNFN 18 (142)
Q Consensus 8 ~~CpIC~~~~~ 18 (142)
+.|++|...|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2emf_A 13 FECTECGKAFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCchhC
Confidence 45555554444
No 217
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.74 E-value=48 Score=15.95 Aligned_cols=12 Identities=25% Similarity=0.487 Sum_probs=6.4
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2epw_A 13 CKCTECGKAFCW 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eeCCCCCCccCC
Confidence 556665554443
No 218
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.69 E-value=46 Score=16.08 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=7.0
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2en6_A 13 YGCNECGKTFSQ 24 (46)
T ss_dssp EEETTTTEEESS
T ss_pred eECCCCCcccCc
Confidence 566666655544
No 219
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.67 E-value=49 Score=15.98 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=6.8
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2enc_A 13 FKCEECGKGFYT 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred cCCCCCCCcCCC
Confidence 566666555543
No 220
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.42 E-value=38 Score=19.89 Aligned_cols=38 Identities=13% Similarity=0.364 Sum_probs=24.9
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...|.-|.+.+...+...-+..|...|. .|-.|++.+.
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~ 62 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECF-------------VCADCNLNLK 62 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTC-------------CCSSSCCCTT
T ss_pred CCCcccCCCEecccEEEECCceECccCC-------------EecCCCCCCC
Confidence 3578889887776554445555555543 6788887754
No 221
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=30.89 E-value=51 Score=15.95 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=5.8
Q ss_pred ccccccccccc
Q 032386 8 DVCSVCHGNFN 18 (142)
Q Consensus 8 ~~CpIC~~~~~ 18 (142)
+.|++|...|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2el6_A 13 YKCSQCEKSFS 23 (46)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 45655555444
No 222
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=30.85 E-value=16 Score=23.19 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=27.8
Q ss_pred CCCccccccccccccCcee-e--cCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 4 PPCGDVCSVCHGNFNVPCQ-A--NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 4 ~~~~~~CpIC~~~~~~pv~-~--~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
++.+..|.+|.+.-. -+. - .|-.+|...|+. +...+ .+...||.|.-
T Consensus 12 ~~~~~~C~~C~~~G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P-~g~W~Cp~c~C 61 (107)
T 4gne_A 12 QMHEDYCFQCGDGGE-LVMCDKKDCPKAYHLLCLN--LTQPP-YGKWECPWHQC 61 (107)
T ss_dssp CSSCSSCTTTCCCSE-EEECCSTTCCCEECTGGGT--CSSCC-SSCCCCGGGBC
T ss_pred CCCCCCCCcCCCCCc-EeEECCCCCCcccccccCc--CCcCC-CCCEECCCCCC
Confidence 345678999985321 111 1 377788888885 44433 45567886653
No 223
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.67 E-value=11 Score=22.42 Aligned_cols=46 Identities=24% Similarity=0.508 Sum_probs=27.9
Q ss_pred ccccccccccCceee---cCCCcccHhHHHHHHHhCCCCCCCCCCCCcc
Q 032386 9 VCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQACRCPLCRR 54 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~ 54 (142)
.|.+|...-.....+ .|...|...|+..-+...+......||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 677787532222222 5888888888865444444222678999864
No 224
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=30.66 E-value=34 Score=18.60 Aligned_cols=13 Identities=23% Similarity=0.851 Sum_probs=9.5
Q ss_pred CCCCCCCCccccc
Q 032386 45 QACRCPLCRRRIT 57 (142)
Q Consensus 45 ~~~~CP~Cr~~~~ 57 (142)
.+..|+.|.+.+.
T Consensus 48 ~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 48 KPFQCRICMRNFS 60 (73)
T ss_dssp CCEECTTTCCEES
T ss_pred CCeECCCCCchhC
Confidence 3468999988754
No 225
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=30.46 E-value=14 Score=20.50 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=4.6
Q ss_pred CCcccccccc
Q 032386 5 PCGDVCSVCH 14 (142)
Q Consensus 5 ~~~~~CpIC~ 14 (142)
+++..||+|-
T Consensus 34 P~dw~CP~Cg 43 (55)
T 2v3b_B 34 PADWVCPDCG 43 (55)
T ss_dssp CTTCCCTTTC
T ss_pred CCCCcCCCCC
Confidence 3444455544
No 226
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=30.25 E-value=15 Score=20.15 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=5.8
Q ss_pred CCccccccccc
Q 032386 5 PCGDVCSVCHG 15 (142)
Q Consensus 5 ~~~~~CpIC~~ 15 (142)
+++..||+|-.
T Consensus 33 P~dw~CP~Cg~ 43 (52)
T 1yk4_A 33 PDDWVCPLCGA 43 (52)
T ss_dssp CTTCBCTTTCC
T ss_pred CCCCcCCCCCC
Confidence 44555665543
No 227
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.17 E-value=48 Score=19.00 Aligned_cols=28 Identities=25% Similarity=0.687 Sum_probs=20.1
Q ss_pred CCccccccccccccC-ceeecCCCcccHh
Q 032386 5 PCGDVCSVCHGNFNV-PCQANCSHWFCGN 32 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~-pv~~~CgH~fC~~ 32 (142)
.....|..|...+.. +..=.||..||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred CcCCcChhhCCccCccCEEeecCCEeccc
Confidence 345789999986554 3444699999984
No 228
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.11 E-value=35 Score=19.02 Aligned_cols=39 Identities=13% Similarity=0.365 Sum_probs=24.0
Q ss_pred CccccccccccccC----ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNV----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
....|.-|.+.+.. .+...-+..|..+|. .|-.|++++.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF-------------~C~~C~~~L~ 46 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCF-------------NCKKCSLSLV 46 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTC-------------BCSSSCCBCT
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccC-------------EeccCCCcCC
Confidence 34578888887663 444444555555443 6777877654
No 229
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.00 E-value=53 Score=15.84 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~F~~ 24 (47)
T 2epx_A 13 YECIECGKAFIQ 24 (47)
T ss_dssp BCCSSSCCCBSS
T ss_pred EECCccCchhCC
Confidence 556665555543
No 230
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.93 E-value=43 Score=16.25 Aligned_cols=12 Identities=17% Similarity=0.484 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|-..|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2em8_A 13 YKCVECGKGYKR 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECcccCchhCC
Confidence 566666555543
No 231
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.91 E-value=41 Score=16.28 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2emp_A 13 YMCNECGKAFSV 24 (46)
T ss_dssp EECSSSCCEESC
T ss_pred eECCCCCchhCC
Confidence 566666555543
No 232
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=29.81 E-value=15 Score=20.35 Aligned_cols=10 Identities=40% Similarity=0.883 Sum_probs=4.4
Q ss_pred CCcccccccc
Q 032386 5 PCGDVCSVCH 14 (142)
Q Consensus 5 ~~~~~CpIC~ 14 (142)
+++..||+|-
T Consensus 34 P~dw~CP~Cg 43 (54)
T 4rxn_A 34 PDDWVCPLCG 43 (54)
T ss_dssp CTTCBCTTTC
T ss_pred CCCCcCcCCC
Confidence 3344455443
No 233
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=29.64 E-value=6.2 Score=21.40 Aligned_cols=44 Identities=16% Similarity=0.409 Sum_probs=24.7
Q ss_pred ccccccccccCc--ee--e-cCCCcccHhHHHHHHHhCCCCCCCCCCCCc
Q 032386 9 VCSVCHGNFNVP--CQ--A-NCSHWFCGNCIMLVWDHGSTLQACRCPLCR 53 (142)
Q Consensus 9 ~CpIC~~~~~~p--v~--~-~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr 53 (142)
.|.+|.....+. .+ - .|..+|...|+.---.... .+...||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAE-NEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHH-HSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccC-CCCEECCCCC
Confidence 577887755422 22 2 4888999999843221110 1346899885
No 234
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=29.60 E-value=15 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=18.9
Q ss_pred CccccccccccccC-ceeec--CCCcccHh
Q 032386 6 CGDVCSVCHGNFNV-PCQAN--CSHWFCGN 32 (142)
Q Consensus 6 ~~~~CpIC~~~~~~-pv~~~--CgH~fC~~ 32 (142)
....|..|...-.+ =+-+. |||.+|++
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCC
Confidence 35679999854333 45677 99999954
No 235
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.31 E-value=41 Score=16.29 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2emh_A 13 YICTVCGKAFTD 24 (46)
T ss_dssp EECTTTCCEESS
T ss_pred cCCCCCCchhCC
Confidence 556665555543
No 236
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=29.00 E-value=32 Score=19.01 Aligned_cols=13 Identities=23% Similarity=0.529 Sum_probs=9.4
Q ss_pred Ccccccccccccc
Q 032386 6 CGDVCSVCHGNFN 18 (142)
Q Consensus 6 ~~~~CpIC~~~~~ 18 (142)
+-+.||+|.+.+.
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 3468899988654
No 237
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.90 E-value=41 Score=19.33 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=23.1
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|.-|...+.......-+..|...|. .|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF-------------~C~~C~~~L~ 52 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDHF-------------NCANCGKELT 52 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTTS-------------BCSSSCCBCC
T ss_pred CCCccCCCEecceEEEECcceeCCCCC-------------EeCCCCCccC
Confidence 578888887665444444544444443 6788887765
No 238
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=28.85 E-value=21 Score=23.34 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=19.7
Q ss_pred CCccccccccccccCceeecCCCcccHh
Q 032386 5 PCGDVCSVCHGNFNVPCQANCSHWFCGN 32 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~~CgH~fC~~ 32 (142)
++...|..|...-..=+-+.|||.-|..
T Consensus 32 ~~~~~C~~C~~~~~LwlCL~CG~vgCgr 59 (129)
T 2g45_A 32 PCGWKCSKCDMRENLWLNLTDGSILCGR 59 (129)
T ss_dssp CCBCCCSSSSCCSSEEEETTTCCEEECC
T ss_pred CCCCcCccccCcCceEEeccCCccccCc
Confidence 4556799888764444567899998854
No 239
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=28.74 E-value=25 Score=20.44 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=10.1
Q ss_pred Ccccccccccccc
Q 032386 6 CGDVCSVCHGNFN 18 (142)
Q Consensus 6 ~~~~CpIC~~~~~ 18 (142)
+-+.||+|.+.+.
T Consensus 7 ~iL~CP~ck~~L~ 19 (70)
T 2js4_A 7 DILVCPVCKGRLE 19 (70)
T ss_dssp CCCBCTTTCCBEE
T ss_pred hheECCCCCCcCE
Confidence 4479999999665
No 240
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.66 E-value=22 Score=21.10 Aligned_cols=37 Identities=14% Similarity=0.428 Sum_probs=24.2
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|.-|...+...+...-+..|...|+ .|-.|++.+.
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~CF-------------~C~~C~~~L~ 62 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEEF-------------NCAHCKNTMA 62 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTTC-------------BCSSSCCBCS
T ss_pred CCCccCCCEecceEEEECCccccccCC-------------ccCCCCCCCC
Confidence 468888887765555545555555444 6778887765
No 241
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=28.53 E-value=27 Score=20.01 Aligned_cols=40 Identities=18% Similarity=0.444 Sum_probs=21.9
Q ss_pred ccccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.+.|++|...|... .-+....+......+..|+.|.+.+.
T Consensus 3 ~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C~k~f~ 42 (88)
T 1llm_C 3 PFQCRICMRNFSRS-----------DHLTTHIRTHTGEKPFACDICGRKFA 42 (88)
T ss_dssp CEECTTTCCEESCH-----------HHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred CCcCCCCCCccCCH-----------HHHHHHHHHcCCCCCccCCCCCCccC
Confidence 36788887776653 22222222211123468999988754
No 242
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.31 E-value=46 Score=16.13 Aligned_cols=12 Identities=33% Similarity=0.628 Sum_probs=6.6
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~F~~ 24 (46)
T 2eoo_A 13 YGCNECGKNFGR 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred EEccccCcccCC
Confidence 556666555543
No 243
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=28.22 E-value=16 Score=21.29 Aligned_cols=9 Identities=44% Similarity=1.128 Sum_probs=5.2
Q ss_pred CCCCCCccc
Q 032386 47 CRCPLCRRR 55 (142)
Q Consensus 47 ~~CP~Cr~~ 55 (142)
..||.|...
T Consensus 41 w~CP~Cga~ 49 (70)
T 1dx8_A 41 FMCPACRSP 49 (70)
T ss_dssp CBCTTTCCB
T ss_pred CcCCCCCCC
Confidence 356666654
No 244
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.90 E-value=37 Score=16.54 Aligned_cols=12 Identities=33% Similarity=0.611 Sum_probs=6.7
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytt_A 13 YQCSECGKSFSG 24 (46)
T ss_dssp TCCSSSCCCCSS
T ss_pred eeCCCCCcccCC
Confidence 556666555543
No 245
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.81 E-value=58 Score=15.65 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=6.4
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytj_A 13 YICAECGKAFTI 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCChhhCC
Confidence 556665555443
No 246
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=27.81 E-value=13 Score=18.51 Aligned_cols=14 Identities=43% Similarity=0.942 Sum_probs=10.7
Q ss_pred ecCCCcccHhHHHH
Q 032386 23 ANCSHWFCGNCIML 36 (142)
Q Consensus 23 ~~CgH~fC~~Ci~~ 36 (142)
.+|.|..|..|--.
T Consensus 10 ascehtmcgycqgp 23 (40)
T 1erd_A 10 ASCEHTMCGYCQGP 23 (40)
T ss_dssp HHTCGGGGGGSCHH
T ss_pred HhccccccccccCC
Confidence 47999999887544
No 247
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.74 E-value=58 Score=15.65 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2yso_A 13 HQCRECGEIFFQ 24 (46)
T ss_dssp EECTTTCCEESS
T ss_pred EEccccChhhCC
Confidence 556665555543
No 248
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.56 E-value=31 Score=16.77 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=6.4
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2ytg_A 13 FKCGECGKSYNQ 24 (46)
T ss_dssp EECTTTCCEESS
T ss_pred eECCCCCcccCC
Confidence 456655555443
No 249
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=26.34 E-value=52 Score=22.42 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=25.3
Q ss_pred cccccccccccC-ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNV-PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~-pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
+.|..|...+.. .....=|..||..|..+.+. + .|..|.+...
T Consensus 143 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~--~-----kc~~C~~~~g 186 (192)
T 1b8t_A 143 FRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG--P-----KGFGFGQGAG 186 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC--C-----CCCCCCCCCC
T ss_pred CCccccCCCCCCCcccccCCEEeCHHHHHHhcC--C-----cCCCCCCccc
Confidence 456666665542 22333566788888866442 2 6778876533
No 250
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=26.29 E-value=10 Score=27.45 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=25.2
Q ss_pred ccccccccccCceee---cCCCcccHhHHHHHHHhCCCCC-CCCCCCCcc
Q 032386 9 VCSVCHGNFNVPCQA---NCSHWFCGNCIMLVWDHGSTLQ-ACRCPLCRR 54 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~---~CgH~fC~~Ci~~~~~~~~~~~-~~~CP~Cr~ 54 (142)
.|.+|...-.....+ .|...|...|+..-+...+ .+ ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP-~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVP-SEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCC-SSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCC-CCCCCCCcCCcC
Confidence 477776532211122 5888888888875454444 34 678999965
No 251
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.16 E-value=61 Score=15.37 Aligned_cols=12 Identities=33% Similarity=0.647 Sum_probs=6.5
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 11 ~~C~~C~k~f~~ 22 (44)
T 2emx_A 11 FGCSCCEKAFSS 22 (44)
T ss_dssp EECSSSSCEESS
T ss_pred ccCCCCCcccCC
Confidence 556665555443
No 252
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.03 E-value=29 Score=19.02 Aligned_cols=37 Identities=11% Similarity=0.346 Sum_probs=22.9
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|+-|...+...+...-+..|...|. .|..|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~ 42 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHF-------------VCAKCEKPFL 42 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTC-------------BCTTTCCBCS
T ss_pred CCCcccCCEecceEEEECccccccCcC-------------EECCCCCCCC
Confidence 468888886665544444555544443 6777877654
No 253
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.83 E-value=35 Score=18.93 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=23.2
Q ss_pred ccccccccccc--CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFN--VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|.-|...+. ..+...-+..|...|. .|-.|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~ 44 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCF-------------LCSGCEQPLG 44 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTC-------------BCTTTCCBTT
T ss_pred CCCccCCCccccCccEEEECccccCcccC-------------eECCCCCcCC
Confidence 47888888776 3444445555555443 6777777654
No 254
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=25.72 E-value=47 Score=18.70 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=27.8
Q ss_pred ccccccccccccC-ceeecCCCcccH-hHHHHHHHhCCCCCCCCCCCCccc
Q 032386 7 GDVCSVCHGNFNV-PCQANCSHWFCG-NCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 7 ~~~CpIC~~~~~~-pv~~~CgH~fC~-~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
=+.|..|...+.. +....=|..||. .|..+.+ ++ .|..|...
T Consensus 27 CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~-----~C~~C~~~ 70 (76)
T 1iml_A 27 CLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GP-----KGFGRGGA 70 (76)
T ss_dssp TCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SC-----CCSSCCCS
T ss_pred CCCccccCccCCCCceECcCCeEeeCHHHHHHHh--Cc-----cCCCcCCc
Confidence 3678888887765 334445678999 6986643 22 68888654
No 255
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.17 E-value=50 Score=18.92 Aligned_cols=28 Identities=25% Similarity=0.657 Sum_probs=19.8
Q ss_pred CCccccccccccccC-ceeecCCCcccHh
Q 032386 5 PCGDVCSVCHGNFNV-PCQANCSHWFCGN 32 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~-pv~~~CgH~fC~~ 32 (142)
.....|..|...+.. +..=.||..||..
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEeecCCEeccc
Confidence 345689999986544 3344799999984
No 256
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.04 E-value=25 Score=20.36 Aligned_cols=12 Identities=33% Similarity=0.728 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 032386 7 GDVCSVCHGNFN 18 (142)
Q Consensus 7 ~~~CpIC~~~~~ 18 (142)
-+.||+|.+.+.
T Consensus 8 iL~CP~ck~~L~ 19 (68)
T 2hf1_A 8 ILVCPLCKGPLV 19 (68)
T ss_dssp ECBCTTTCCBCE
T ss_pred heECCCCCCcCe
Confidence 368999998765
No 257
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.45 E-value=6.1 Score=22.94 Aligned_cols=46 Identities=17% Similarity=0.310 Sum_probs=28.2
Q ss_pred cccccccccccC--cee--ecCCCcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 8 DVCSVCHGNFNV--PCQ--ANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 8 ~~CpIC~~~~~~--pv~--~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
..| ||...-.+ .++ -.|..||...|+.--- .........||.|+..
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~-~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINN-ADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCT-TSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCc-cccCCCcEECCCccCC
Confidence 568 79876433 222 2588899999984321 1112455789999764
No 258
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.36 E-value=55 Score=18.41 Aligned_cols=37 Identities=14% Similarity=0.380 Sum_probs=20.8
Q ss_pred cccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|+-|...+...+...-+..|..+|. .|-.|++++.
T Consensus 6 ~~C~~C~~~I~~~~v~a~~~~wH~~CF-------------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAGEKHYHPSCA-------------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSCCBCCSSCCBCTTTS-------------CCSSSCCCCC
T ss_pred CCcccCCCEecCeeEEeCCCCCCCCcC-------------EeCCCCCCCC
Confidence 467777776665444444444444443 5666666643
No 259
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.31 E-value=48 Score=19.63 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=7.0
Q ss_pred CCCCCCCcccc
Q 032386 46 ACRCPLCRRRI 56 (142)
Q Consensus 46 ~~~CP~Cr~~~ 56 (142)
+..|+.|.+.+
T Consensus 65 ~~~C~~C~~~f 75 (110)
T 2csh_A 65 PYECNICAKRF 75 (110)
T ss_dssp CEECSSSCCEE
T ss_pred CeeCCCCcchh
Confidence 45677777653
No 260
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.04 E-value=39 Score=16.39 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=6.6
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2yu8_A 13 YKCNECGKVFTQ 24 (46)
T ss_dssp EECSSSCCEESS
T ss_pred eECCcCCchhCC
Confidence 556666555543
No 261
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.50 E-value=68 Score=17.56 Aligned_cols=41 Identities=20% Similarity=0.462 Sum_probs=22.5
Q ss_pred CccccccccccccCceeecCCCcccHhHHHHHHH-hCCC-CCCCCCCCCccccc
Q 032386 6 CGDVCSVCHGNFNVPCQANCSHWFCGNCIMLVWD-HGST-LQACRCPLCRRRIT 57 (142)
Q Consensus 6 ~~~~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~-~~~~-~~~~~CP~Cr~~~~ 57 (142)
..+.|++|...|... .-+..-.. .... ..+..|+.|.+.+.
T Consensus 14 k~~~C~~C~k~f~~~-----------~~L~~H~~~~h~~~~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 14 KPYECYICHARFTQS-----------GTMKMHILQKHTENVAKFHCPHCDTVIA 56 (77)
T ss_dssp CSEECTTTCCEESCH-----------HHHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred CCeECCCcCchhCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCccC
Confidence 346788777766542 22333332 2221 23568999987644
No 262
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=23.30 E-value=31 Score=19.05 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=7.2
Q ss_pred cccccccccccC
Q 032386 8 DVCSVCHGNFNV 19 (142)
Q Consensus 8 ~~CpIC~~~~~~ 19 (142)
+.|++|...|..
T Consensus 2 ~~C~~C~~~f~~ 13 (82)
T 2kmk_A 2 FDCKICGKSFKR 13 (82)
T ss_dssp EECSSSCCEESS
T ss_pred ccCCCCcccccC
Confidence 457777666543
No 263
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=22.89 E-value=29 Score=20.03 Aligned_cols=13 Identities=15% Similarity=0.140 Sum_probs=10.2
Q ss_pred Ccccccccccccc
Q 032386 6 CGDVCSVCHGNFN 18 (142)
Q Consensus 6 ~~~~CpIC~~~~~ 18 (142)
+-+.||+|.+.+.
T Consensus 9 eiL~CP~ck~~L~ 21 (67)
T 2jny_A 9 EVLACPKDKGPLR 21 (67)
T ss_dssp CCCBCTTTCCBCE
T ss_pred HHhCCCCCCCcCe
Confidence 4479999999765
No 264
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.79 E-value=55 Score=18.34 Aligned_cols=40 Identities=18% Similarity=0.537 Sum_probs=23.3
Q ss_pred CCcccccccccccc--CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 5 PCGDVCSVCHGNFN--VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 5 ~~~~~CpIC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.....|+-|.+.+. +.+...-|..|...|. .|-.|++++.
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~ 50 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCF-------------VCAQCFQQFP 50 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTC-------------CCTTTCCCCG
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccC-------------eECCCCCCCC
Confidence 34468888888764 3333334444444433 6777777655
No 265
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.58 E-value=24 Score=21.90 Aligned_cols=10 Identities=50% Similarity=1.481 Sum_probs=8.2
Q ss_pred CCCCCccccc
Q 032386 48 RCPLCRRRIT 57 (142)
Q Consensus 48 ~CP~Cr~~~~ 57 (142)
.||+|...+.
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 7999988754
No 266
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.53 E-value=36 Score=19.50 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=18.6
Q ss_pred ccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.|..|.+.+...+...-+..|..+|. .|..|++++.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPECF-------------ACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTSC-------------BCTTTCCBCC
T ss_pred cCccCCCCcCceEEEECCceeccccC-------------CccCCCCccC
Confidence 56666665554333333333333332 6777777653
No 267
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.30 E-value=84 Score=18.54 Aligned_cols=14 Identities=14% Similarity=0.577 Sum_probs=9.7
Q ss_pred CCCCCCCCCccccc
Q 032386 44 LQACRCPLCRRRIT 57 (142)
Q Consensus 44 ~~~~~CP~Cr~~~~ 57 (142)
..+..|+.|.+.+.
T Consensus 60 ~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 60 QEMFTCHHCGKQLR 73 (96)
T ss_dssp CCCCCCSSSCCCCS
T ss_pred CCCeECCCCCCeeC
Confidence 34568999987643
No 268
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.24 E-value=53 Score=18.47 Aligned_cols=38 Identities=16% Similarity=0.476 Sum_probs=23.0
Q ss_pred cccccccccccc-CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 7 GDVCSVCHGNFN-VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 7 ~~~CpIC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
...|..|.+.+. ......-+..|...|. .|..|++++.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF-------------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL-------------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC-------------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC-------------CCCCCCCccC
Confidence 357888888766 3333334444444443 6778877755
No 269
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.08 E-value=41 Score=19.05 Aligned_cols=37 Identities=14% Similarity=0.372 Sum_probs=22.6
Q ss_pred cccccccccccC----ceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFNV----PCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|..|...+.. .+...-+..|..+|. .|-.|++++.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF-------------~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF-------------NCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC-------------BCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC-------------ChhhCCCcCC
Confidence 468888887664 444444555555544 6777777654
No 270
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.01 E-value=31 Score=18.64 Aligned_cols=15 Identities=20% Similarity=0.467 Sum_probs=11.2
Q ss_pred CCCCCCCCCcccccc
Q 032386 44 LQACRCPLCRRRITL 58 (142)
Q Consensus 44 ~~~~~CP~Cr~~~~~ 58 (142)
++...||.|...+..
T Consensus 10 ~~~~~CPrCn~~f~~ 24 (49)
T 2e72_A 10 GGRKICPRCNAQFRV 24 (49)
T ss_dssp SSCCCCTTTCCCCSS
T ss_pred CCceeCCcccccccc
Confidence 356789999987653
No 271
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.77 E-value=29 Score=24.01 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=15.8
Q ss_pred eecCCCcccHhHHHHHHHhCCCCCCCCCCCCcccc
Q 032386 22 QANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRI 56 (142)
Q Consensus 22 ~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~ 56 (142)
...|||++=+. ..+ -.||.|..+-
T Consensus 158 C~~CG~~~~g~-------~~p----~~CP~C~~~k 181 (191)
T 1lko_A 158 CRNCGYVHEGT-------GAP----ELCPACAHPK 181 (191)
T ss_dssp ETTTCCEEEEE-------ECC----SBCTTTCCBG
T ss_pred ECCCCCEeeCC-------CCC----CCCCCCcCCH
Confidence 35799987543 222 3899998763
No 272
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.23 E-value=53 Score=18.72 Aligned_cols=37 Identities=16% Similarity=0.387 Sum_probs=21.1
Q ss_pred ccccccccccc--CceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 8 DVCSVCHGNFN--VPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 8 ~~CpIC~~~~~--~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
..|..|...+. +.+...=+..|..+|. .|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-------------~C~~C~~~L~ 54 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCF-------------TCSNCKQVIG 54 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTC-------------CCSSSCCCCT
T ss_pred CcCccCCcccccCceEEEECccccccccC-------------chhhCCCccC
Confidence 36777777665 3333334444444443 6777777654
No 273
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=21.18 E-value=34 Score=19.04 Aligned_cols=53 Identities=15% Similarity=0.380 Sum_probs=32.1
Q ss_pred CCCCcccccccccccc---Cceee--cCCCcccHhHHHHHHHhC--CCCCCCCCCCCccc
Q 032386 3 GPPCGDVCSVCHGNFN---VPCQA--NCSHWFCGNCIMLVWDHG--STLQACRCPLCRRR 55 (142)
Q Consensus 3 ~~~~~~~CpIC~~~~~---~pv~~--~CgH~fC~~Ci~~~~~~~--~~~~~~~CP~Cr~~ 55 (142)
.+.++..|.+|.+... ..+.. .|...|...|+..-+... ...+...|+.|...
T Consensus 2 ~~~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 2 SSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3566789999997532 22222 588888888876422110 01345688888754
No 274
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.97 E-value=8.2 Score=29.19 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCccccccccccccCceee----cCC--CcccHhHHHHHHHhCCCCCCCCCCCCccc
Q 032386 5 PCGDVCSVCHGNFNVPCQA----NCS--HWFCGNCIMLVWDHGSTLQACRCPLCRRR 55 (142)
Q Consensus 5 ~~~~~CpIC~~~~~~pv~~----~Cg--H~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~ 55 (142)
.....||+|-......+.. .=| +-+|.-|-.+| ... ...||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W-~~~----R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEW-HYV----RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEE-ECC----TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEE-eec----CcCCcCCCCC
Confidence 4457999999876554443 123 56788888786 332 2489999875
No 275
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=20.86 E-value=49 Score=18.58 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=6.7
Q ss_pred CCCCCCCcccc
Q 032386 46 ACRCPLCRRRI 56 (142)
Q Consensus 46 ~~~CP~Cr~~~ 56 (142)
+..|+.|...+
T Consensus 62 ~~~C~~C~~~f 72 (90)
T 1a1h_A 62 PFACDICGRKF 72 (90)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCCCCchh
Confidence 34677776653
No 276
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.34 E-value=1.1e+02 Score=17.13 Aligned_cols=10 Identities=20% Similarity=0.587 Sum_probs=4.4
Q ss_pred CCcccHhHHH
Q 032386 26 SHWFCGNCIM 35 (142)
Q Consensus 26 gH~fC~~Ci~ 35 (142)
+..||..|..
T Consensus 61 ~~~yC~~cy~ 70 (80)
T 2cuq_A 61 EDPYCVACFG 70 (80)
T ss_dssp SSEEEHHHHH
T ss_pred CEEECHHHHH
Confidence 3444444443
No 277
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.11 E-value=39 Score=19.35 Aligned_cols=36 Identities=17% Similarity=0.460 Sum_probs=19.1
Q ss_pred ccccccccccCceeecCCCcccHhHHHHHHHhCCCCCCCCCCCCccccc
Q 032386 9 VCSVCHGNFNVPCQANCSHWFCGNCIMLVWDHGSTLQACRCPLCRRRIT 57 (142)
Q Consensus 9 ~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~~~CP~Cr~~~~ 57 (142)
.|.-|...+...+...-+..|...|. .|-.|++++.
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~CF-------------~C~~C~~~L~ 52 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDCF-------------VCAVCRLPFP 52 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTTS-------------SCSSSCCCCC
T ss_pred cCccccCEeccceEEECCceeCccCC-------------ccccCCCCCC
Confidence 66777765554333334444443333 6667776654
Done!