Query 032387
Match_columns 142
No_of_seqs 139 out of 228
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:00:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_H RP30, RP40, 40S ribosom 100.0 3.8E-81 1.3E-85 501.4 15.0 141 1-141 47-189 (190)
2 2xzm_3 RPS7E, 40S ribosomal pr 100.0 1E-69 3.4E-74 437.3 12.3 140 1-141 46-190 (197)
3 2cxc_A NUSA; transcription ter 84.8 2.4 8.1E-05 32.0 6.2 101 11-134 37-137 (144)
4 3bwd_D RAC-like GTP-binding pr 48.8 40 0.0014 22.8 5.4 42 10-51 81-122 (182)
5 3reg_A RHO-like small GTPase; 47.6 44 0.0015 23.2 5.6 45 10-54 96-140 (194)
6 4gzl_A RAS-related C3 botulinu 47.2 40 0.0014 24.1 5.4 43 9-51 102-144 (204)
7 1mh1_A RAC1; GTP-binding, GTPa 46.0 47 0.0016 22.4 5.4 43 9-51 77-119 (186)
8 2atx_A Small GTP binding prote 45.6 46 0.0016 23.1 5.4 44 10-53 91-134 (194)
9 2q3h_A RAS homolog gene family 44.4 49 0.0017 23.1 5.5 44 10-53 93-136 (201)
10 2j0v_A RAC-like GTP-binding pr 38.7 66 0.0023 22.7 5.4 44 10-53 82-125 (212)
11 1qp6_A Protein (alpha2D); de n 38.5 7.2 0.00025 23.1 0.2 8 32-39 3-10 (35)
12 2j1l_A RHO-related GTP-binding 38.1 79 0.0027 22.6 5.8 45 9-53 106-150 (214)
13 2fv8_A H6, RHO-related GTP-bin 38.0 69 0.0023 22.7 5.5 42 10-51 98-139 (207)
14 1m7b_A RND3/RHOE small GTP-bin 37.7 78 0.0027 21.8 5.6 46 9-54 79-124 (184)
15 2gco_A H9, RHO-related GTP-bin 37.6 70 0.0024 22.5 5.4 44 10-53 98-141 (201)
16 1gwn_A RHO-related GTP-binding 33.3 93 0.0032 22.4 5.6 44 10-53 101-144 (205)
17 1wjw_A Phosphoacetylglucosamin 32.4 35 0.0012 23.9 3.0 40 91-130 58-98 (112)
18 3q3j_B RHO-related GTP-binding 30.8 95 0.0033 22.3 5.3 45 10-54 100-144 (214)
19 2wkq_A NPH1-1, RAS-related C3 25.4 1.3E+02 0.0046 22.5 5.5 44 10-53 228-271 (332)
20 1fjr_A Methuselah ectodomain; 21.8 42 0.0014 26.3 2.0 23 78-100 26-49 (195)
21 3drn_A Peroxiredoxin, bacterio 20.2 1.3E+02 0.0043 20.5 4.0 40 8-48 28-68 (161)
No 1
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H
Probab=100.00 E-value=3.8e-81 Score=501.36 Aligned_cols=141 Identities=52% Similarity=0.884 Sum_probs=136.9
Q ss_pred CeeeecCCeeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCC--cccccCCcchhHHHHhhh
Q 032387 1 MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS--AVQRPRSRTLTSVHEAML 78 (142)
Q Consensus 1 kei~v~~~kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~~--~qkrPRSRTLTaVhdaiL 78 (142)
||||||||+||||||||+|||++|||||+||++||||||||+||+|||||||||||++++ +|+|||||||||||||||
T Consensus 47 kEiev~~~kKAivIfVP~p~lk~f~KIq~rLvrELEKKfsgkhVvfiAqRrIlpkp~r~~~~kqkRPRSRTLTaVhdaiL 126 (190)
T 3u5c_H 47 REIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKIL 126 (190)
T ss_dssp EEEECTTSCEEEEEEECSSSHHHHHHHTHHHHHHHHHTTCSEEEEEEECCCCCCCCCSSSCCCSCCCGGGSHHHHHHHHH
T ss_pred EEEEecCCcEEEEEEecHHHHHHHHHHHHHHHHHHHhccCCCEEEEEecceEcCCCccCCcccccCCCCCchhHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999887 499999999999999999
Q ss_pred hcccccceeeeeeEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEEEECCCCC
Q 032387 79 EDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE 141 (142)
Q Consensus 79 eDLv~PseIvGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~ 141 (142)
||||||+|||||||||++|||+++|||||++||||+|||+|||++|||+||||||+||||+.+
T Consensus 127 eDLv~P~eIVGKRir~rlDGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgkdv~FeFp~~~ 189 (190)
T 3u5c_H 127 EDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPSET 189 (190)
T ss_dssp HHHSCSSCEEEEEEEECSSSCEEEEEEECSSSTHHHHTTHHHHHHHHHHHHSCEEEEECCC--
T ss_pred hhcccchheeeeEEEEecCCCEEEEEEECHHHhcccchhhHHHHHHHHHhhCCcEEEEecCcc
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 2
>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3
Probab=100.00 E-value=1e-69 Score=437.34 Aligned_cols=140 Identities=36% Similarity=0.588 Sum_probs=135.0
Q ss_pred Ceeeec-CC---eeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCC-cccccCCcchhHHHH
Q 032387 1 MQIDVP-GN---RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS-AVQRPRSRTLTSVHE 75 (142)
Q Consensus 1 kei~v~-~~---kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~~-~qkrPRSRTLTaVhd 75 (142)
|||||| || +||||||||+||+++|||||.||++|||||| |+||+|||||||||+|+++. +|+||||||||||||
T Consensus 46 Keiev~~~~~k~kkaivIfVP~~~lk~f~kiq~rLvrELEKKf-g~~Vv~ia~RrIl~kp~~~~~~q~rprsrTltaV~~ 124 (197)
T 2xzm_3 46 KEFQINKTNKKAKSAVLIYVHFQSYRVLLSAARKLIIELEKKL-KQIVFFTAQRKIESKWVKEHKSQQRPRSRCLTYVYD 124 (197)
T ss_dssp EEEEEECTTCCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTT-SSEEEEEECCCCCCSSCCCCTTCCCCGGGSHHHHHH
T ss_pred EEEEecCCCCccceEEEEEEccchhhHHHHHHHHHHHHHHHHh-CCcEEEEecccccCCCcccCccccCCCccchhhhHH
Confidence 689997 67 7799999999999999999999999999999 89999999999999997754 899999999999999
Q ss_pred hhhhcccccceeeeeeEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEEEECCCCC
Q 032387 76 AMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE 141 (142)
Q Consensus 76 aiLeDLv~PseIvGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~ 141 (142)
|||||||||+|||||||||++|||+++||+||++||+++|||+|+|++||++|||+||+||||+.+
T Consensus 125 aiLeDLv~PaeIvGkRir~~~DGs~~~KV~Ld~~d~~~ve~Kletf~~VykkLTGkdV~feFp~~~ 190 (197)
T 2xzm_3 125 ALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVTTREVTFEFKEDK 190 (197)
T ss_dssp HHHHHHSTTSCCSEEEEEECSSSCEECCEEEESTTHHHHHHHHHHHHHHHHHHSCCBCCEEEECCC
T ss_pred HHHHHhccchheeeeEEEEecCCCEEEEEEeCHHHhcccccchHHHHHHHHHHhCCCEEEEEcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999865
No 3
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=84.79 E-value=2.4 Score=31.98 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=71.5
Q ss_pred EEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccccCCcchhHHHHhhhhcccccceeeee
Q 032387 11 AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGK 90 (142)
Q Consensus 11 aivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~~~qkrPRSRTLTaVhdaiLeDLv~PseIvGK 90 (142)
.+++.|+=-.+-+.--.....++.+++.+ |..+=+|-. |- =-...+..+++|+++.+-
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~el-gekIdIV~~-----------------s~----d~~~fI~naLsPA~V~~V 94 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREAL-GKNIEVVEY-----------------SS----DLERIVKNLFPGVKIESI 94 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHH-SSEEEEEEC-----------------CS----SHHHHHHHHSTTSCEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHh-CCeeEEEEc-----------------CC----CHHHHHHHhcCCceEEEE
Confidence 45566655556555545566777777777 888877631 11 134456788999999999
Q ss_pred eEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEE
Q 032387 91 RIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVV 134 (142)
Q Consensus 91 Rir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~ 134 (142)
.+-.. ||++.+.|.+++.|....--|-..-...-.+|||....
T Consensus 95 ~i~~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~id 137 (144)
T 2cxc_A 95 NVRER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG 137 (144)
T ss_dssp EEEEE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred EEeec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeC
Confidence 87666 89999999999888776666666666677788876543
No 4
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=48.82 E-value=40 Score=22.80 Aligned_cols=42 Identities=17% Similarity=0.392 Sum_probs=33.1
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 51 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRr 51 (142)
.++++.+-.....+|..+...+..+++...++.++++++...
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 122 (182)
T 3bwd_D 81 DVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122 (182)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEech
Confidence 466666667778889888777888998887788999998744
No 5
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=47.59 E-value=44 Score=23.24 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=36.4
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 54 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 54 (142)
.++++.+-.....+|..+...+..+++...++..+++++...=++
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 466777777788999998888899999888889999998865444
No 6
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=47.16 E-value=40 Score=24.06 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=35.5
Q ss_pred eeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 032387 9 RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 51 (142)
Q Consensus 9 kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRr 51 (142)
-.++++.+-.....+|..+...+..++++..++..+++++...
T Consensus 102 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 144 (204)
T 4gzl_A 102 TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 144 (204)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEech
Confidence 3567777777888999998888899999988899999998754
No 7
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=46.00 E-value=47 Score=22.43 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=33.1
Q ss_pred eeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 032387 9 RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 51 (142)
Q Consensus 9 kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRr 51 (142)
-.++++.+-.....+|..+...+..++....++.++++++...
T Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 119 (186)
T 1mh1_A 77 TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKL 119 (186)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECH
T ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcc
Confidence 3466666667777888888777888888877788999998754
No 8
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=45.58 E-value=46 Score=23.07 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=33.6
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 53 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 53 (142)
.++++.+-.....+|..+...++.+++...++.++++++...=+
T Consensus 91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 134 (194)
T 2atx_A 91 DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 45666666677788888877788889887778899999886433
No 9
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=44.44 E-value=49 Score=23.06 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=34.7
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 53 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 53 (142)
.++++.+-.....+|..+...++.++....++.++++++...=+
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 136 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDL 136 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGG
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhh
Confidence 46777777777889988877788889888788999999885543
No 10
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=38.71 E-value=66 Score=22.66 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=33.8
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 53 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 53 (142)
.++++.+-.....+|..+...++.+++...++.++++++...=+
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 125 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHh
Confidence 46666666677788888877788899888778899999875443
No 11
>1qp6_A Protein (alpha2D); de novo design, protein design, protein folding, bisecting U motif, four-helix bundle, helix-turn-helix, de novo protein; NMR {Synthetic} SCOP: k.16.1.1
Probab=38.47 E-value=7.2 Score=23.14 Aligned_cols=8 Identities=88% Similarity=1.182 Sum_probs=6.8
Q ss_pred HHHHHhhc
Q 032387 32 VRELEKKF 39 (142)
Q Consensus 32 v~ELEKKf 39 (142)
|.||||||
T Consensus 3 veelekkf 10 (35)
T 1qp6_A 3 VEELEKKF 10 (35)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
Confidence 57899999
No 12
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=38.08 E-value=79 Score=22.64 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=34.5
Q ss_pred eeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 032387 9 RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 53 (142)
Q Consensus 9 kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 53 (142)
-.++++.+-.....+|..+...+..++....++..+++++...=+
T Consensus 106 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 150 (214)
T 2j1l_A 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150 (214)
T ss_dssp EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGG
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 346666666777888998887888899887788899999875433
No 13
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=37.97 E-value=69 Score=22.69 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=32.5
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 51 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRr 51 (142)
.++++.+-.....+|..+...+..+++...++..+++++...
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~ 139 (207)
T 2fv8_A 98 DVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKK 139 (207)
T ss_dssp CEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEch
Confidence 456666666777888888777788888877788999998754
No 14
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=37.70 E-value=78 Score=21.79 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=34.1
Q ss_pred eeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 032387 9 RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 54 (142)
Q Consensus 9 kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 54 (142)
-.++++.+-.....+|..+...+..++....++.++++++...=++
T Consensus 79 ~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 79 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 3466666777777888887666778887777788999998865443
No 15
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=37.59 E-value=70 Score=22.53 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=33.5
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 53 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 53 (142)
.++++.+-.....+|..+...+..+++...++..+++++...=+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 141 (201)
T 2gco_A 98 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHh
Confidence 45666666677788888877788888887778899999885544
No 16
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=33.33 E-value=93 Score=22.36 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=33.5
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 53 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 53 (142)
.++++.+-.....+|..+...+..+++....+..+++++...=+
T Consensus 101 d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 144 (205)
T 1gwn_A 101 DAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144 (205)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhh
Confidence 46666667777888988866777888877778899999885544
No 17
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=32.38 E-value=35 Score=23.87 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=34.3
Q ss_pred eEEEeeCCc-EEEEEEeCccccccchhhhhHHHHHHHHhhC
Q 032387 91 RIRYRLDGS-KIMKVFLDPKERNNTEYKLDTFAAVYRKLSG 130 (142)
Q Consensus 91 Rir~~~DGs-kl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTg 130 (142)
++.+|.+|+ .+++|+....++..++..++.+....+.+.+
T Consensus 58 wvlvRpSGTEP~irvy~Ea~~~~~~~~~~~~~~~~i~~~~~ 98 (112)
T 1wjw_A 58 RAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLAG 98 (112)
T ss_dssp EEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeCCCccEEEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 889999997 7999999988888888888888888877654
No 18
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=30.84 E-value=95 Score=22.33 Aligned_cols=45 Identities=20% Similarity=0.206 Sum_probs=34.8
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 54 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 54 (142)
.++|+.+-.....+|..+...+..++....++..+++++...=++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 467777777778889886667788888888889999998865443
No 19
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=25.44 E-value=1.3e+02 Score=22.49 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=34.1
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 53 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 53 (142)
.++++.+-.....+|..+...+..++.....+..+++++...=+
T Consensus 228 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 228 DVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhc
Confidence 46666677777888988877788888887778899999875433
No 20
>1fjr_A Methuselah ectodomain; GPCR, G protein-coupled receptor, signaling PROT; HET: NAG; 2.30A {Drosophila melanogaster} SCOP: b.102.1.1 PDB: 2pzx_A
Probab=21.76 E-value=42 Score=26.25 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=18.2
Q ss_pred hhcccccceeeee-eEEEeeCCcE
Q 032387 78 LEDVVLPAEIVGK-RIRYRLDGSK 100 (142)
Q Consensus 78 LeDLv~PseIvGK-Rir~~~DGsk 100 (142)
-|++++|++.+|. --++.-||++
T Consensus 26 y~gi~iP~~l~~~Ydy~~~~dg~r 49 (195)
T 1fjr_A 26 FEGLLVPAILTGEYDFRILPDDSK 49 (195)
T ss_dssp ETTEEECGGGEEEEEEEECTTSCE
T ss_pred ECCEEEChHHeEEEeEEEcCCCcE
Confidence 4689999999998 5566668864
No 21
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=20.18 E-value=1.3e+02 Score=20.53 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=25.2
Q ss_pred Cee-EEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEe
Q 032387 8 NRK-AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIA 48 (142)
Q Consensus 8 ~kk-aivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~ia 48 (142)
|+. .+|.|.|...-..++. +..-+.+|.++|.++.+.||+
T Consensus 28 gk~~vvl~F~~a~~C~~C~~-~~~~l~~~~~~~~~~~v~vv~ 68 (161)
T 3drn_A 28 GKHNIVLYFYPKDDTPGSTR-EASAFRDNWDLLKDYDVVVIG 68 (161)
T ss_dssp TTSEEEEEECSCTTCHHHHH-HHHHHHHTHHHHHTTCEEEEE
T ss_pred CCCCEEEEEEcCCCCCchHH-HHHHHHHHHHHHHHcCCEEEE
Confidence 566 7778886665555554 444456677777666565554
Done!