Query 032387
Match_columns 142
No_of_seqs 139 out of 228
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 22:01:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032387.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032387hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7ba_ c.37.1.8 (A:) RhoE (RN 46.4 21 0.0015 23.7 5.6 45 9-53 74-118 (179)
2 d1e19a_ c.73.1.1 (A:) Carbamat 45.8 6.3 0.00046 29.4 2.9 44 89-136 1-49 (313)
3 d1mh1a_ c.37.1.8 (A:) Rac {Hum 45.7 21 0.0015 23.6 5.4 45 10-54 78-122 (183)
4 d2bcgg2 c.3.1.3 (G:400-446) Gu 40.9 5.2 0.00038 24.0 1.3 24 113-136 21-44 (47)
5 d1z2aa1 c.37.1.8 (A:8-171) Rab 37.2 31 0.0023 22.2 5.2 41 10-51 76-116 (164)
6 d2atxa1 c.37.1.8 (A:9-193) Rho 33.5 42 0.003 22.1 5.5 44 11-54 83-126 (185)
7 d1t0hb_ c.37.1.1 (B:) Guanylat 33.2 14 0.001 28.1 3.1 59 19-77 28-97 (219)
8 d1wjwa_ d.129.2.1 (A:) Phospho 32.9 15 0.0011 24.7 2.8 41 91-131 58-99 (112)
9 d1kmqa_ c.37.1.8 (A:) RhoA {Hu 30.2 53 0.0038 21.2 5.4 45 10-54 75-119 (177)
10 d2bmea1 c.37.1.8 (A:6-179) Rab 29.6 54 0.004 21.0 5.4 44 10-53 79-122 (174)
11 d2ngra_ c.37.1.8 (A:) CDC42 {H 25.5 69 0.005 21.0 5.4 45 10-54 76-120 (191)
12 d2f9la1 c.37.1.8 (A:8-182) Rab 23.8 79 0.0057 20.3 5.4 44 9-53 77-121 (175)
13 d1z0fa1 c.37.1.8 (A:8-173) Rab 22.6 88 0.0064 19.8 5.4 43 10-52 78-120 (166)
14 d2cx4a1 c.47.1.10 (A:4-163) Ba 21.9 49 0.0036 21.1 3.9 42 7-49 29-70 (160)
15 d1e0sa_ c.37.1.8 (A:) ADP-ribo 21.0 99 0.0072 19.7 5.6 46 8-53 79-125 (173)
No 1
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=46.43 E-value=21 Score=23.75 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=37.8
Q ss_pred eeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 032387 9 RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 53 (142)
Q Consensus 9 kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 53 (142)
--++++..-+....+|+.+..++...++..-++-++++|+...=+
T Consensus 74 ~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl 118 (179)
T d1m7ba_ 74 SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 118 (179)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGG
T ss_pred hhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccc
Confidence 357777778888999999999999999988889999999986544
No 2
>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=45.85 E-value=6.3 Score=29.45 Aligned_cols=44 Identities=23% Similarity=0.404 Sum_probs=26.6
Q ss_pred eeeEEEeeCCcEEEEEEeCccccccchhhhhHHHHH---HHHh--hCCcEEEE
Q 032387 89 GKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAV---YRKL--SGKDVVFD 136 (142)
Q Consensus 89 GKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~V---YkkL--TgKdv~Fe 136 (142)
||||.++++|| +..|+..+-.+++-++.+..+ ...| .|.++.+-
T Consensus 1 ~KrIVIKiGgs----~l~~~~~~~~~~~~~~~l~~~~~~Ia~L~~~G~~vVlV 49 (313)
T d1e19a_ 1 GKRVVIALGGN----ALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVIT 49 (313)
T ss_dssp CCEEEEECCGG----GTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEeChH----hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 89999999998 345555555666433333333 3333 56676653
No 3
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.70 E-value=21 Score=23.60 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=36.4
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 54 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 54 (142)
-++++.+=.....+|+.+..++..+++..-++..+++|+...=++
T Consensus 78 ~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~ 122 (183)
T d1mh1a_ 78 DVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122 (183)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH
T ss_pred ceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccch
Confidence 466666667888999999988999999888888999998865443
No 4
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.89 E-value=5.2 Score=23.99 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=20.7
Q ss_pred cchhhhhHHHHHHHHhhCCcEEEE
Q 032387 113 NTEYKLDTFAAVYRKLSGKDVVFD 136 (142)
Q Consensus 113 ~ve~Kl~tfs~VYkkLTgKdv~Fe 136 (142)
..|.-.+-.-.+|+++||++..|+
T Consensus 21 HFEtt~~Dv~diY~ritG~~ldl~ 44 (47)
T d2bcgg2 21 HFESMTDDVKDIYFRVTGHPLVLK 44 (47)
T ss_dssp BSHHHHHHHHHHHHHHHSSCCCCC
T ss_pred hhHHHHHHHHHHHHHhhCCcccee
Confidence 477888888999999999998775
No 5
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.25 E-value=31 Score=22.16 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=32.1
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeee
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRR 51 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRr 51 (142)
.++++.+-+....+|+.++ .++.++.+..++.++++||...
T Consensus 76 ~~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~iilVgnK~ 116 (164)
T d1z2aa1 76 QACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKI 116 (164)
T ss_dssp CEEEEEEETTCHHHHHTHH-HHHHHHHHHHCSCCEEEEEECG
T ss_pred ceEEEEEeccchhhhhhcc-cccccccccCCCceEEEeeccC
Confidence 4566667778889999876 5678888888899999998743
No 6
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.46 E-value=42 Score=22.13 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=34.8
Q ss_pred EEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 032387 11 AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 54 (142)
Q Consensus 11 aivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 54 (142)
|+++.+=+....+|..+..+...+++...++..+++|+...=|+
T Consensus 83 ~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~ 126 (185)
T d2atxa1 83 VFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 126 (185)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred eeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccc
Confidence 55555556778899999889999999888888899998866554
No 7
>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=33.17 E-value=14 Score=28.10 Aligned_cols=59 Identities=27% Similarity=0.492 Sum_probs=31.9
Q ss_pred hhHHHH---HHHHHHHHHHHHhhcCCCeEEE-------EeeeeecCCCCCCCcccccCCc-chhHHHHhh
Q 032387 19 RLRKAY---RKIHTKLVRELEKKFSGKDVIL-------IATRRILRPPKKGSAVQRPRSR-TLTSVHEAM 77 (142)
Q Consensus 19 ~~lk~f---~kiq~rLv~ELEKKfsg~~Vv~-------iaqRrIl~kp~~~~~qkrPRSR-TLTaVhdai 77 (142)
|.||.| .-.|..|...|-+.|.|+-.+- .|+|..+..|.+...--|..+| .+..|+..|
T Consensus 28 PsLkGyevTDMMqkALfD~Lk~rF~grI~itrv~aDIslakrs~~~n~~k~~~~~rs~~r~~~~eVq~eI 97 (219)
T d1t0hb_ 28 PSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEI 97 (219)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHTTTSEEEEEECSCGGGCC----------CCCCCCSSSSCHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHhcCCceEEEEEecchhHhhhccccCchhhhhhhcccccchHHHHHHHH
Confidence 677777 4568999999999998865543 3899998888765533344443 255565443
No 8
>d1wjwa_ d.129.2.1 (A:) Phosphoacetylglucosamine mutase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.90 E-value=15 Score=24.73 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=36.5
Q ss_pred eEEEeeCCc-EEEEEEeCccccccchhhhhHHHHHHHHhhCC
Q 032387 91 RIRYRLDGS-KIMKVFLDPKERNNTEYKLDTFAAVYRKLSGK 131 (142)
Q Consensus 91 Rir~~~DGs-kl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgK 131 (142)
|+.+|..|+ .+++|+....+++.++.=.+.+..+.+++.|-
T Consensus 58 rvlIRpSGTEp~iRi~vEa~~~~~~~~i~~~i~~lv~~~~~g 99 (112)
T d1wjwa_ 58 RAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLAGG 99 (112)
T ss_dssp EEEEECSSSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEeCCCCceEEEEEecCCHHHHHHHHHHHHHHHHHHhCC
Confidence 899999997 79999999999998988888899888888874
No 9
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.21 E-value=53 Score=21.23 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=35.2
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 54 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 54 (142)
.++++.+=+....+|..+..+....+++..++-++++++...=++
T Consensus 75 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~ 119 (177)
T d1kmqa_ 75 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 119 (177)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGT
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeeccccc
Confidence 466666667788999998888888888887788999998765443
No 10
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.58 E-value=54 Score=21.02 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=33.7
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeec
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL 53 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl 53 (142)
.|+++.+-.....+|..++..+........++.+++++|.--=+
T Consensus 79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~ 122 (174)
T d2bmea1 79 AGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122 (174)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGG
T ss_pred CEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccc
Confidence 46666666778899999888888877767778899888875543
No 11
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.46 E-value=69 Score=21.01 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=34.7
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecC
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILR 54 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~ 54 (142)
-++++.+-+....+|+.+..++...++..-.+-++++++...=|+
T Consensus 76 ~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~ 120 (191)
T d2ngra_ 76 DVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120 (191)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGG
T ss_pred ceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 466666677888999999888888888776788888888765443
No 12
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.84 E-value=79 Score=20.31 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=31.3
Q ss_pred eeEEEEEecchhHHHHHHHHHHHHHHHHhhc-CCCeEEEEeeeeec
Q 032387 9 RKAVVIHIPYRLRKAYRKIHTKLVRELEKKF-SGKDVILIATRRIL 53 (142)
Q Consensus 9 kkaivifVP~~~lk~f~kiq~rLv~ELEKKf-sg~~Vv~iaqRrIl 53 (142)
..|+|+.+-.....+|..++..+ .++.+.. ++-+++++|...=+
T Consensus 77 ~~~~i~v~d~~~~~S~~~~~~~~-~~i~~~~~~~~piilvgnK~Dl 121 (175)
T d2f9la1 77 AVGALLVYDIAKHLTYENVERWL-KELRDHADSNIVIMLVGNKSDL 121 (175)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHH-HHHHHHSCTTCEEEEEEECTTC
T ss_pred cCeEEEEEECCCcccchhHHHHH-HHHHHhcCCCCcEEEEEeeecc
Confidence 44777777888899999988654 6665555 45688888875433
No 13
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.64 E-value=88 Score=19.80 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=29.5
Q ss_pred eEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeee
Q 032387 10 KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRI 52 (142)
Q Consensus 10 kaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrI 52 (142)
-++++.+-+....+|+.++.++-.....+..+..+++++...=
T Consensus 78 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~D 120 (166)
T d1z0fa1 78 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120 (166)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred cEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEccccc
Confidence 3677777778889999888776554445555667777776443
No 14
>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}
Probab=21.85 E-value=49 Score=21.14 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=26.2
Q ss_pred CCeeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEee
Q 032387 7 GNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIAT 49 (142)
Q Consensus 7 ~~kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaq 49 (142)
.||..++.|+|-..-..+.+ |..-+.++-..|.+..+.+++-
T Consensus 29 ~gk~vvl~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~~vv~i 70 (160)
T d2cx4a1 29 RGRPAVLIFFPAAFSPVCTK-ELCTFRDKMAQLEKANAEVLAI 70 (160)
T ss_dssp TSSCEEEEECSCTTCHHHHH-HHHHHHHTCTTTSTTCCEEEEE
T ss_pred CCCEEEEEecccccCCchhh-hhhhhhcccccccccccccccc
Confidence 36778889987655555554 5555566666776665544443
No 15
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}
Probab=21.01 E-value=99 Score=19.67 Aligned_cols=46 Identities=11% Similarity=0.240 Sum_probs=36.1
Q ss_pred CeeEEEEEecchhHHHHHHHHHHHHHHHHh-hcCCCeEEEEeeeeec
Q 032387 8 NRKAVVIHIPYRLRKAYRKIHTKLVRELEK-KFSGKDVILIATRRIL 53 (142)
Q Consensus 8 ~kkaivifVP~~~lk~f~kiq~rLv~ELEK-Kfsg~~Vv~iaqRrIl 53 (142)
+..++++.+......+|..++..|-..++. ..++..+++++...=+
T Consensus 79 ~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl 125 (173)
T d1e0sa_ 79 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDL 125 (173)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred ccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccc
Confidence 345788888888888999999999888875 4678899999874433
Done!